Citrus Sinensis ID: 021681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.634 | 0.466 | 0.693 | 1e-78 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.634 | 0.466 | 0.693 | 1e-78 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.634 | 0.466 | 0.693 | 1e-78 | |
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.634 | 0.465 | 0.693 | 1e-78 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.634 | 0.466 | 0.693 | 2e-78 | |
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.679 | 0.502 | 0.661 | 1e-77 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.533 | 0.540 | 0.355 | 3e-19 | |
| P29782 | 328 | dTDP-glucose 4,6-dehydrat | yes | no | 0.550 | 0.518 | 0.335 | 1e-16 | |
| Q9ZAE8 | 320 | dTDP-glucose 4,6-dehydrat | yes | no | 0.550 | 0.531 | 0.336 | 1e-16 | |
| Q6MWV3 | 314 | UDP-glucose 4-epimerase O | yes | no | 0.556 | 0.547 | 0.313 | 4e-16 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQV 309
M ++DGRVVSNF+ Q
Sbjct: 266 MHMNDGRVVSNFILQA 281
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQV 309
M ++DGRVVSNF+ Q
Sbjct: 266 MHMNDGRVVSNFILQA 281
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Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQV 309
M ++DGRVVSNF+ Q
Sbjct: 266 MHMNDGRVVSNFILQA 281
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 87 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 146
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 147 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 206
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 207 YGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 266
Query: 294 MCLDDGRVVSNFVAQV 309
M ++DGRVVSNF+ Q
Sbjct: 267 MHMNDGRVVSNFILQA 282
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Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPR
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 265
Query: 294 MCLDDGRVVSNFVAQV 309
M ++DGRVVSNF+ Q
Sbjct: 266 MHMNDGRVVSNFILQA 281
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 162/210 (77%)
Query: 100 SFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH 159
SF K V + R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H
Sbjct: 70 SFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH 129
Query: 160 HFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK 219
+ FELI HDVVEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAK
Sbjct: 130 WIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK 189
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
RVGA+ LL STSEVYGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GV
Sbjct: 190 RVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV 249
Query: 280 EVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309
EVR+ARIFNT+G RM ++DGRVVSNF+ Q
Sbjct: 250 EVRVARIFNTFGSRMHMNDGRVVSNFILQA 279
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Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 18/183 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSH+VDKLI+ +VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKFLLTST 230
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYG+P P E + PI S Y K E Y+R G+E I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 291 GPR 293
G R
Sbjct: 172 GER 174
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 15/185 (8%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE----VIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV 173
++VTG AGF+GS V L+ G V +D + G DNL +PR+ R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST EVYG LEH W P+ S Y K + + L + +H G++VR+ R N
Sbjct: 125 STDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 289 TYGPR 293
YGPR
Sbjct: 180 NYGPR 184
|
Involved in the biosynthesis of the streptose moiety of streptomycin. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Streptomyces griseus (taxid: 1911) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 23/193 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD--------EVIVIDNF-FTGRKDNLVHHFRNPRFE 167
++I+VTGGAGF+GSH V LI GD +V V+D + G NL +PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDVVEPILLEVDQIYH--LACPASPVHYKYNPVKT---IKTNVMGTLNMLGLAKR-- 220
+R D+ + L+E H +A A+ H + V + + +N++GT +L A R
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHH 119
Query: 221 VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE 280
+G +FL ST EVYG W +P+ S Y K ++ L + YH+ G++
Sbjct: 120 IG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMD 173
Query: 281 VRIARIFNTYGPR 293
V + R N YGPR
Sbjct: 174 VVVTRCSNNYGPR 186
|
Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +DNF TGR NL H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 ILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G + ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +YG P E+P ET P S Y GK E + G++ N
Sbjct: 121 SGGSIYGTPPEYPTPETA-----PTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPAN 175
Query: 289 TYGPR 293
YGPR
Sbjct: 176 VYGPR 180
|
Mycobacterium tuberculosis (taxid: 1773) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| 209420680 | 436 | UDP-glucuronic acid decarboxylase 1 [Gos | 0.993 | 0.704 | 0.826 | 1e-144 | |
| 225439840 | 437 | PREDICTED: UDP-glucuronic acid decarboxy | 0.996 | 0.704 | 0.819 | 1e-144 | |
| 449439990 | 438 | PREDICTED: UDP-glucuronic acid decarboxy | 0.970 | 0.684 | 0.808 | 1e-143 | |
| 356548166 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.970 | 0.702 | 0.822 | 1e-143 | |
| 356537387 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.970 | 0.702 | 0.818 | 1e-142 | |
| 356537389 | 444 | PREDICTED: UDP-glucuronic acid decarboxy | 0.970 | 0.675 | 0.818 | 1e-142 | |
| 297816652 | 434 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.987 | 0.702 | 0.822 | 1e-141 | |
| 60932236 | 435 | UDP-glucuronic acid decarboxylase 1 [Pop | 0.990 | 0.703 | 0.813 | 1e-139 | |
| 145339456 | 433 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.977 | 0.697 | 0.812 | 1e-139 | |
| 145361853 | 435 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.977 | 0.694 | 0.812 | 1e-139 |
| >gi|209420680|gb|ACI46983.1| UDP-glucuronic acid decarboxylase 1 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/312 (82%), Positives = 270/312 (86%), Gaps = 5/312 (1%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE L Q PY K+ KHPRSLPRSINYLFKEQRLLFI +GILIGST
Sbjct: 3 QLHKQSSINHRRDEEILIPQTPPYSPKSLKHPRSLPRSINYLFKEQRLLFIFIGILIGST 62
Query: 62 FFILQPILSRLGPPQELHPF--HALTAN--QQRQSFQFHRTSSFGAKTGRVPVGIGRRRL 117
FFILQP LSRLGP E HP + + N Q F + K GRVPVGIGRRR+
Sbjct: 63 FFILQPTLSRLGP-TETHPSVPKSFSNNVVSHTQEFSVSNQNPIHGKMGRVPVGIGRRRM 121
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+N+VH F NPRFELIRHDVVEPI
Sbjct: 122 RIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENVVHLFGNPRFELIRHDVVEPI 181
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDP
Sbjct: 182 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDP 241
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
L+HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG GVEVRIARIFNTYGPRMCLD
Sbjct: 242 LQHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGDGVEVRIARIFNTYGPRMCLD 301
Query: 298 DGRVVSNFVAQV 309
DGRVVSNFVAQ
Sbjct: 302 DGRVVSNFVAQA 313
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439840|ref|XP_002277802.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/311 (81%), Positives = 269/311 (86%), Gaps = 3/311 (0%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE + Q+ PY KT KHPRSLPRSINYLFKEQRLLFILVGILIGST
Sbjct: 3 QLHKQSSVNHRRDEEIPTSQSPPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGST 62
Query: 62 FFILQPILSRLGPPQELH--PFHALTANQQRQSFQFHRTSSFGA-KTGRVPVGIGRRRLR 118
FFI+QP LSRLGP + P R S GA K GR+PVGIGRRRLR
Sbjct: 63 FFIVQPSLSRLGPAETRSTIPRSVTIGVTSRDQISIPYPQSNGAGKVGRIPVGIGRRRLR 122
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+N++HHF NPRFELIRHDVVEPIL
Sbjct: 123 IVVTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENVMHHFGNPRFELIRHDVVEPIL 182
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPL
Sbjct: 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPL 242
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
EHPQKETYWGNVNPIG RSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRMC+DD
Sbjct: 243 EHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYGPRMCIDD 302
Query: 299 GRVVSNFVAQV 309
GRVVSNFVAQ
Sbjct: 303 GRVVSNFVAQA 313
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439990|ref|XP_004137768.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449517780|ref|XP_004165922.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/318 (80%), Positives = 269/318 (84%), Gaps = 18/318 (5%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE SPY K KHPRSLPRSINYLF+EQRLLF+ VGILIGST
Sbjct: 6 QLHKQSSINHRRDEEVPPVPTSPYSPKALKHPRSLPRSINYLFREQRLLFVFVGILIGST 65
Query: 62 FFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTS----------SFGAKTGRVPVG 111
FFILQP LSR+GP + + R+SF TS FG GRVPVG
Sbjct: 66 FFILQPSLSRIGPSE--------AGSAIRRSFATGLTSRDQVSGSGIYGFGKTGGRVPVG 117
Query: 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH 171
IGRRRLRIVVTGGAGFVGSHLVDKLI+RGD+VIVIDNFFTGRKDNLVHH NPRFELIRH
Sbjct: 118 IGRRRLRIVVTGGAGFVGSHLVDKLIERGDDVIVIDNFFTGRKDNLVHHLGNPRFELIRH 177
Query: 172 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTS
Sbjct: 178 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTS 237
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYG
Sbjct: 238 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYG 297
Query: 292 PRMCLDDGRVVSNFVAQV 309
PRMCLDDGRVVSNFVAQ
Sbjct: 298 PRMCLDDGRVVSNFVAQA 315
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548166|ref|XP_003542474.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/309 (82%), Positives = 270/309 (87%), Gaps = 9/309 (2%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S + SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSETSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSRLGPP+ +H F T R + G +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRLGPPEPVHTFLPRTG--------LARFAGPGPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 300
PQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCLDDGR
Sbjct: 235 PQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 294
Query: 301 VVSNFVAQV 309
VVSNFVAQ
Sbjct: 295 VVSNFVAQA 303
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537387|ref|XP_003537209.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/309 (81%), Positives = 269/309 (87%), Gaps = 9/309 (2%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S ++SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSR+GPP+ H F T R S +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRMGPPEPAHTFLPRTG--------LARFSGTRPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 300
PQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCLDDGR
Sbjct: 235 PQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 294
Query: 301 VVSNFVAQV 309
VVSNFVAQ
Sbjct: 295 VVSNFVAQA 303
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537389|ref|XP_003537210.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/309 (81%), Positives = 269/309 (87%), Gaps = 9/309 (2%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S ++SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSR+GPP+ H F T R S +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRMGPPEPAHTFLPRTG--------LARFSGTRPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 300
PQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCLDDGR
Sbjct: 235 PQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 294
Query: 301 VVSNFVAQV 309
VVSNFVAQ
Sbjct: 295 VVSNFVAQA 303
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816652|ref|XP_002876209.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis lyrata subsp. lyrata] gi|297322047|gb|EFH52468.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/310 (82%), Positives = 270/310 (87%), Gaps = 5/310 (1%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRT--SSFGAKTGRVPVGIGRRRLR 118
TFFILQP LSRLG + + S +T S G +TGRVPVGIGR+RLR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVSDSPPSMKTFNSGGGGRTGRVPVGIGRKRLR 120
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPIL
Sbjct: 121 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVVEPIL 180
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVD IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 181 LEVDHIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 240
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
EHPQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCLDD
Sbjct: 241 EHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDD 300
Query: 299 GRVVSNFVAQ 308
GRVVSNFVAQ
Sbjct: 301 GRVVSNFVAQ 310
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|60932236|gb|AAX37334.1| UDP-glucuronic acid decarboxylase 1 [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/311 (81%), Positives = 266/311 (85%), Gaps = 5/311 (1%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQ+S+ RRDEE + Q+ Y K KHPRSLPRSINYLFKEQRLLFILVGILIGST
Sbjct: 4 QLHKQTSVNHRRDEEIPTSQS--YSPKMLKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
Query: 62 FFILQPILSRLGPPQ-ELHPFHALTANQQRQSFQFHRTSSFGAKT--GRVPVGIGRRRLR 118
FFI QP LSRL P H + + + Q + F +T GRVP GIGR+ LR
Sbjct: 62 FFIFQPTLSRLNPSDPTTHSSLSSSIYHRNQDSSSGSSGFFSKRTFPGRVPAGIGRKSLR 121
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPIL
Sbjct: 122 IVVTGGAGFVGSHLVDKLISRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL 181
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 182 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 241
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRMCLDD
Sbjct: 242 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGADVEVRIARIFNTYGPRMCLDD 301
Query: 299 GRVVSNFVAQV 309
GRVVSNFVAQV
Sbjct: 302 GRVVSNFVAQV 312
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145339456|ref|NP_190920.3| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] gi|14595662|gb|AAK70880.1|AF387787_1 UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] gi|6729503|emb|CAB67659.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana] gi|332645580|gb|AEE79101.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/314 (81%), Positives = 272/314 (86%), Gaps = 12/314 (3%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELH------PFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGR 114
TFFILQP LSRLG + + + R +F + G +TGRVPVGIGR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVTDSPPSRSTFN---SGGGGGRTGRVPVGIGR 117
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
+RLRIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVV
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVV 177
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVY
Sbjct: 178 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVY 237
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRM
Sbjct: 238 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRM 297
Query: 295 CLDDGRVVSNFVAQ 308
CLDDGRVVSNFVAQ
Sbjct: 298 CLDDGRVVSNFVAQ 311
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145361853|ref|NP_850694.2| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] gi|17473549|gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana] gi|28058970|gb|AAO29973.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana] gi|332645579|gb|AEE79100.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/314 (81%), Positives = 272/314 (86%), Gaps = 12/314 (3%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELH------PFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGR 114
TFFILQP LSRLG + + + R +F + G +TGRVPVGIGR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVTDSPPSRSTFN---SGGGGGRTGRVPVGIGR 117
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
+RLRIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVV
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVV 177
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVY
Sbjct: 178 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVY 237
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRM
Sbjct: 238 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRM 297
Query: 295 CLDDGRVVSNFVAQ 308
CLDDGRVVSNFVAQ
Sbjct: 298 CLDDGRVVSNFVAQ 311
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.974 | 0.676 | 0.624 | 4.7e-96 | |
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.595 | 0.539 | 0.794 | 3e-78 | |
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.595 | 0.536 | 0.789 | 1e-77 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.595 | 0.515 | 0.778 | 2.7e-77 | |
| TIGR_CMR|GSU_1815 | 311 | GSU_1815 "NAD-dependent epimer | 0.595 | 0.591 | 0.728 | 1.1e-71 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.595 | 0.437 | 0.706 | 8e-69 | |
| UNIPROTKB|F1PU61 | 414 | UXS1 "Uncharacterized protein" | 0.595 | 0.444 | 0.706 | 8e-69 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.595 | 0.506 | 0.706 | 8e-69 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.595 | 0.438 | 0.706 | 8e-69 | |
| MGI|MGI:1915133 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.595 | 0.438 | 0.706 | 8e-69 |
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 193/309 (62%), Positives = 224/309 (72%)
Query: 7 SSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQ 66
S + RR ET Y K K ++ R + Y+ +EQRL+F+LVGI I + F +
Sbjct: 3 SELINRR-HETDQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTIF 61
Query: 67 PILSRLGPPQE------LHPFHA-LTANQQRQSFQFHRTSSFGAKXXXXXXXXXXXXXXX 119
P ++ P + + P + + A Q ++ + GA
Sbjct: 62 PRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIGATGGKIPLGLKRKGLRV 121
Query: 120 XXXXXAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL 179
AGFVGSHLVD+L+ RGD VIV+DNFFTGRK+N++HHF NP FE+IRHDVVEPILL
Sbjct: 122 VVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVVEPILL 181
Query: 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE 239
EVDQIYHLACPASPVHYK+NPVKTIKTNV+GTLNMLGLAKRVGA+FLLTSTSEVYGDPL+
Sbjct: 182 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 241
Query: 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDG 299
HPQ ETYWGNVNPIG RSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRMC+DDG
Sbjct: 242 HPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDG 301
Query: 300 RVVSNFVAQ 308
RVVSNFVAQ
Sbjct: 302 RVVSNFVAQ 310
|
|
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 147/185 (79%), Positives = 163/185 (88%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL++ +EVIV DN+FTG KDNL +PRFELIRHDV EP+L+EVDQ
Sbjct: 37 AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQ 96
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 97 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP 156
Query: 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVS 303
E+YWGNVNPIG RSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM +DDGRVVS
Sbjct: 157 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVS 216
Query: 304 NFVAQ 308
NF+AQ
Sbjct: 217 NFIAQ 221
|
|
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 146/185 (78%), Positives = 162/185 (87%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL+ + +EVIV DN+FTG KDNL +PRFELIRHDV EP+ +EVDQ
Sbjct: 39 AGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQ 98
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 99 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQT 158
Query: 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVS 303
E+YWGNVNPIG RSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM +DDGRVVS
Sbjct: 159 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVS 218
Query: 304 NFVAQ 308
NF+AQ
Sbjct: 219 NFIAQ 223
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 144/185 (77%), Positives = 163/185 (88%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL++ +EV+V DN+FTG K+NL +PRFELIRHDV EP+L+EVD+
Sbjct: 53 AGFIGSHLVDKLMENEKNEVVVADNYFTGSKENLKKWIGHPRFELIRHDVTEPLLIEVDR 112
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 113 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP 172
Query: 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVS 303
E+YWGNVNPIG RSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM +DDGRVVS
Sbjct: 173 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVS 232
Query: 304 NFVAQ 308
NF+AQ
Sbjct: 233 NFIAQ 237
|
|
| TIGR_CMR|GSU_1815 GSU_1815 "NAD-dependent epimerase/dehydratase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 134/184 (72%), Positives = 156/184 (84%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGF+GSHL ++L+++G +V+ +DNFFTG K N+ RFE+IRHD++EPILLEVD+I
Sbjct: 9 AGFIGSHLCERLLEQGHDVLCLDNFFTGSKRNIDRLMDFHRFEVIRHDIIEPILLEVDRI 68
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
Y+LACPASPVHY+YNPVKTIKT+VMGT+NMLGLAKRV A+ L STSEVYGDP HPQ E
Sbjct: 69 YNLACPASPVHYQYNPVKTIKTSVMGTINMLGLAKRVRARILQASTSEVYGDPTIHPQPE 128
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
+YWGNVNPIG RSCYDEGKR AETL MDYHR GV++RIARIFNTYGPRM DGRVVSN
Sbjct: 129 SYWGNVNPIGIRSCYDEGKRVAETLLMDYHRQNGVDIRIARIFNTYGPRMAEHDGRVVSN 188
Query: 305 FVAQ 308
FV Q
Sbjct: 189 FVVQ 192
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 130/184 (70%), Positives = 150/184 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 98 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 157
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 158 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNE 217
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 218 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 277
Query: 305 FVAQ 308
F+ Q
Sbjct: 278 FILQ 281
|
|
| UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 130/184 (70%), Positives = 150/184 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 91 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 150
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 151 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 210
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 211 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 270
Query: 305 FVAQ 308
F+ Q
Sbjct: 271 FILQ 274
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 130/184 (70%), Positives = 150/184 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 40 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 99
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 100 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 159
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 160 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 219
Query: 305 FVAQ 308
F+ Q
Sbjct: 220 FILQ 223
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 130/184 (70%), Positives = 150/184 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 97 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 156
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 157 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 216
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 217 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 276
Query: 305 FVAQ 308
F+ Q
Sbjct: 277 FILQ 280
|
|
| MGI|MGI:1915133 Uxs1 "UDP-glucuronate decarboxylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 130/184 (70%), Positives = 150/184 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 97 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 156
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 157 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 216
Query: 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSN 304
YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++DGRVVSN
Sbjct: 217 DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSN 276
Query: 305 FVAQ 308
F+ Q
Sbjct: 277 FILQ 280
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.5__1722__AT3G53520.1 | annotation not avaliable (434 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 309 | |||
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 0.0 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-161 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 1e-138 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-47 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 6e-47 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-41 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 3e-38 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 1e-37 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 6e-37 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 4e-32 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 9e-29 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 1e-27 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 5e-25 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 7e-24 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 2e-22 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-22 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 3e-21 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-20 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 3e-20 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 4e-20 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 4e-20 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 5e-19 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 1e-17 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 2e-16 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 7e-14 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 7e-14 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 3e-13 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 5e-13 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 7e-13 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 1e-12 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 3e-12 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 3e-12 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 1e-11 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-11 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-11 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 3e-11 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 3e-11 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 7e-11 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 9e-11 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 1e-10 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-10 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-10 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-10 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 6e-10 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-09 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 7e-09 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 7e-09 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-08 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 7e-08 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 9e-08 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 9e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-07 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-07 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 1e-07 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-07 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 3e-07 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-07 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 3e-07 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 4e-07 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 6e-07 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 1e-06 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 2e-06 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 5e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 6e-06 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 9e-06 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 1e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 1e-05 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 2e-05 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 3e-05 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 3e-05 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 6e-05 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 8e-05 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 2e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 3e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 4e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 4e-04 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 5e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 5e-04 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 6e-04 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 8e-04 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 0.001 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.002 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.003 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 548 bits (1412), Expect = 0.0
Identities = 260/311 (83%), Positives = 271/311 (87%), Gaps = 3/311 (0%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQ S+ RRDEE + Q+SPY KT KHPRSLPRSINYLFKEQRLLFILVGILIGST
Sbjct: 3 QLHKQMSVNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGST 62
Query: 62 FFILQPILSRLGP--PQELHPFH-ALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLR 118
FFILQP LSRLGP L ++ S +S G +TGRVPVGIGR+RLR
Sbjct: 63 FFILQPSLSRLGPAESTSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLR 122
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPIL
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL 182
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 242
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
EHPQKETYWGNVNPIGERSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCLDD
Sbjct: 243 EHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDD 302
Query: 299 GRVVSNFVAQV 309
GRVVSNFVAQ
Sbjct: 303 GRVVSNFVAQT 313
|
Length = 436 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 456 bits (1174), Expect = e-161
Identities = 207/310 (66%), Positives = 240/310 (77%), Gaps = 9/310 (2%)
Query: 7 SSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFIL- 65
S + RR EET ++ Y K K + R I Y+ +EQRL+F+LVGI I + F +
Sbjct: 3 SELINRRHEETQPTADA-YYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIF 61
Query: 66 ----QPILSRLGPPQE--LHPFHALT-ANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLR 118
QP + P + P + A Q ++ + G G++P+G+ R+ LR
Sbjct: 62 PSSSQPSPYSVDPLSGYGIRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLR 121
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
+VVTGGAGFVGSHLVD+L+ RGD VIV+DNFFTGRK+N++HHF NP FELIRHDVVEPIL
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL 181
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYK+NPVKTIKTNV+GTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 182 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL 241
Query: 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD 298
+HPQ ETYWGNVNPIG RSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRMC+DD
Sbjct: 242 QHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDD 301
Query: 299 GRVVSNFVAQ 308
GRVVSNFVAQ
Sbjct: 302 GRVVSNFVAQ 311
|
Length = 442 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 391 bits (1008), Expect = e-138
Identities = 145/191 (75%), Positives = 164/191 (85%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAGF+GSHL D+L++ G EVI +DNFFTGRK N+ H +P FE IRHDV EP+
Sbjct: 2 RILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTEPL 61
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
LEVDQIYHLACPASPVHY+YNP+KT+KTNV+GTLNMLGLAKRVGA+ LL STSEVYGDP
Sbjct: 62 YLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYGDP 121
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
HPQ E+YWGNVNPIG RSCYDEGKR AETL M YHR GV+VRIARIFNTYGPRM +
Sbjct: 122 EVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMHPN 181
Query: 298 DGRVVSNFVAQ 308
DGRVVSNF+ Q
Sbjct: 182 DGRVVSNFIVQ 192
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-47
Identities = 78/199 (39%), Positives = 110/199 (55%), Gaps = 15/199 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTGGAGF+GSHLV++L++RG EVIV+DN TG+K+NL P + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEV--KPNVKFIEGDIRDDE 58
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
VE VD ++H A AS +P+K + NV+GTLN+L A++ G K F+ S+S
Sbjct: 59 LVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
VYGDP P+ E + NP+ S Y K E + R G+ R FN YG
Sbjct: 119 SVYGDPPYLPKDEDH--PPNPL---SPYAVSKYAGELYCQVFARLYGLPTVSLRYFNVYG 173
Query: 292 PRMCLDDGR--VVSNFVAQ 308
PR + G V+ F+ +
Sbjct: 174 PRQDPNGGYAAVIPIFIER 192
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 6e-47
Identities = 72/197 (36%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI+VTGGAGF+GSHLV++L+ G +V +D G L +L D+V+ +
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDEL 60
Query: 178 LLEV-DQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTST-SEV 233
V D + HLA +S +P + + NV GTLN+L A+ G +F+ S+ S V
Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP P E P + Y K AE L Y R G+ V I R FN YGP
Sbjct: 121 YGDPPPLPIDEDL----GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPG 176
Query: 294 MCLD-DGRVVSNFVAQV 309
D VVS F+ Q+
Sbjct: 177 DKPDLSSGVVSAFIRQL 193
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-41
Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 38/192 (19%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSHLV +L++RG EV+VID
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYGDP 237
D + HLA NP + +TNV+GTLN+L A++ G +F+ S++ VYG P
Sbjct: 32 ---DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGSP 88
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
P++E P+ S Y K AE L Y G+ V I R+ N YGP
Sbjct: 89 EGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPR 143
Query: 298 DGRVVSNFVAQV 309
VV++F+ +
Sbjct: 144 LDGVVNDFIRRA 155
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-38
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 14/184 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP- 176
RI+VTGGAGF+GSHLVD+L++ G+EV+V+DN +GR++N+ F N F ++ D+++
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60
Query: 177 ---ILLEVDQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
+ D ++HLA A+P V +P ++ NV+ T N+L + G K + S+
Sbjct: 61 DKVAKKDGDTVFHLA--ANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASS 118
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
S VYG+ P E Y PI S Y K AE L Y G + I R N
Sbjct: 119 STVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIV 173
Query: 291 GPRM 294
GPR
Sbjct: 174 GPRS 177
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-37
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
++VTG GF+GSHL ++L+ G EV +D + + L+ + + RF I DV
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
VE ++ + D ++HLA + + P+ ++TNV GTLN+L A + K + TSTS
Sbjct: 61 EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTSTS 120
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
EVYG + P E + + RS Y K+ A+ L Y R G+ V I R FNTYG
Sbjct: 121 EVYGTAQDVPIDEDH-PLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRPFNTYG 179
Query: 292 PRMC 295
PR
Sbjct: 180 PRQS 183
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-37
Identities = 67/203 (33%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGG GF+GSHLV +L+ G EVI R+ R D+ +P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVI---VLGRRRRSES---LNTGRIRFHEGDLTDPDA 54
Query: 179 LE-------VDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA-KFLL 227
LE D + HL A+ + P I+ NV+GTL +L A+R G +F+
Sbjct: 55 LERLLAEVQPDAVIHL---AAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVF 111
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
S+SEVYGD + P E P+G S Y K AE L Y R G+ I R+F
Sbjct: 112 ASSSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLF 166
Query: 288 NTYGPR-MCLDDGRVVSNFVAQV 309
N YGP V+ + ++
Sbjct: 167 NVYGPGNPDPFVTHVIPALIRRI 189
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-32
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVHHFRNPRFELIRHDV 173
R ++TG G GS+L + L+++G EV I +F T R D+L + R L D+
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYIN--KDRITLHYGDL 58
Query: 174 VEPI-LLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAK 224
+ L D+IYHLA + +P T + N +GTLN+L + + A+
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F S+SE YG E PQ ET P RS Y K A+ +T +Y G+
Sbjct: 119 FYQASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAVNG 173
Query: 285 RIFNTYGPRMCLDDGRVVSNFVAQV 309
R+FN GPR + V QV
Sbjct: 174 RLFNHEGPRR--GETFVTRKITRQV 196
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 9e-29
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEV--IVIDNFFT--GRKDNLVHHFRNPRFELIRHDVV 174
++VTG GF+GSHLV+ L+ +G EV V+ N F G D ++ + E++ D+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKD-KIEVVTGDIR 59
Query: 175 EPILLE-----VDQIYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLL 227
+P + D ++HLA A P Y P + TNV GTLN+L A+ +G K +
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSYI-APDSYVDTNVTGTLNVLQAARDLGVEKVVH 118
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
TSTSEVYG P E + P+ +S Y K A+ L + ++R V I R F
Sbjct: 119 TSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVTIIRPF 173
Query: 288 NTYGPR 293
NTYGPR
Sbjct: 174 NTYGPR 179
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-27
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+I+VTGGAGF+GS+ V L+++ ++I +D + G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDIC 61
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFL 226
+ L+ ++D + H A + +P I+TNV+GT +L A++ G +F+
Sbjct: 62 DAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGVKRFV 121
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYGD L + T + P S Y K A+ L YHR G+ V I R
Sbjct: 122 HISTDEVYGD-LLDDGEFTETSPLAP---TSPYSASKAAADLLVRAYHRTYGLPVVITRC 177
Query: 287 FNTYGPR 293
N YGP
Sbjct: 178 SNNYGPY 184
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-25
Identities = 57/194 (29%), Positives = 77/194 (39%), Gaps = 16/194 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
R +VTG GF+GSHL ++L G V D +L +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 177 ILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
VD ++HLA + Y + N + N + NML A+ G + FL S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
Query: 235 GDPLEHPQKETYWGNVNPIGE--------RSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
P Q ET V + E + Y K E L Y+ G+E RI R
Sbjct: 121 --PEFK-QLET---TVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRF 174
Query: 287 FNTYGPRMCLDDGR 300
N YGPR D GR
Sbjct: 175 HNIYGPRGTWDGGR 188
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 7e-24
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+I+VTGGAGF+GS+ V ++++ D V+ +D + G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDIC 61
Query: 175 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKF 225
+ L++ D + H A + P I+TNV+GT +L A++ +F
Sbjct: 62 DRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRF 121
Query: 226 LLTSTSEVYGD-PLEHPQ-KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRI 283
ST EVYGD L+ ET NP S Y K ++ L Y R G+ I
Sbjct: 122 HHISTDEVYGDLGLDDDAFTET--TPYNP---SSPYSASKAASDLLVRAYVRTYGLPATI 176
Query: 284 ARIFNTYGPR 293
R N YGP
Sbjct: 177 TRCSNNYGPY 186
|
Length = 340 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-22
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN------PRFELIRH 171
+I+VTG AGF+G H+ +L++RGDEV+ IDN D + R F+ ++
Sbjct: 2 KILVTGAAGFIGFHVAKRLLERGDEVVGIDN-LNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 172 DVVEPILL-------EVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG- 222
D+ + L E D + HLA A V Y NP + +N++G LN+L L + G
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAG-VRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119
Query: 223 AKFLLTSTSEVYGDPLEHPQKETYWGNVN-PIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
+ S+S VYG + P E V+ PI S Y K+ E + Y G+
Sbjct: 120 KHLVYASSSSVYGLNTKMPFSED--DRVDHPI---SLYAATKKANELMAHTYSHLYGIPT 174
Query: 282 RIARIFNTYGP 292
R F YGP
Sbjct: 175 TGLRFFTVYGP 185
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-22
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVHHFRNPRFELIRHDV 173
R+++TGGAGF+GS+L + +G EVI DN G L + + + D+
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHGDI 61
Query: 174 -----VEPILLEVDQIYHLACPASPVHYKY--NPVKTIKTNVMGTLNMLGLAKRVG--AK 224
+E + ++D I H A A P +P +TN +GTLN+L A++ A
Sbjct: 62 RNRNDLEDLFEDIDLIIHTA--AQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNAP 119
Query: 225 FLLTSTSEVYGD-PLEHPQKE--TYW----GNVNP--IGE-------RSCYDEGKRTAET 268
F+ TST++VYGD P P +E T + +P I E S Y K A+
Sbjct: 120 FIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQ 179
Query: 269 LTMDYHRGAGVEVRIARIFNTYGPR-MCLDDGRVVSNFVA 307
+Y R G++ + R GPR +D V+ F+
Sbjct: 180 YVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLK 219
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I+VTGGAG++GSH V +L++ G EV+++DN G ++ L R + D+ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60
Query: 178 LL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
LL ++D + H A + P+K + NV+GTLN+L ++ G K F+ +S
Sbjct: 61 LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120
Query: 230 TSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHR-GAGVEVRIARIFN 288
++ VYG+P P E P+G + Y K +E + D + I R FN
Sbjct: 121 SAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 289 TYG 291
G
Sbjct: 176 VAG 178
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-20
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
RI+VTGGAGF+GS+ V +++ EVIV+D + G +NL NPR+ ++ D+
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 174 ----VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKF 225
V + E D + H A + P I+TNV+GT +L ++ +F
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
ST EVYGD LE K + P+ S Y K ++ L YHR G+ I R
Sbjct: 121 HHISTDEVYGD-LE---KGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 286 IFNTYGP 292
N YGP
Sbjct: 177 CSNNYGP 183
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-20
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 35/192 (18%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+++++TGGAG +GSHL++ L++RG +V+VIDNF TGR+++L H P ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRREHLPDH---PNLTVVEGSIADK 57
Query: 177 ILLEVDQIYHLACPASPVH----YKYNP---VKTIKTNVMGTLNMLGLAKRVGAK-FLLT 228
L VD+++ P + VH YK +P + TNV+G N++ AK+ G K +
Sbjct: 58 AL--VDKLFGDFKPDAVVHTAAAYK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYF 114
Query: 229 STSEVYGDP-------LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
T+ YG L+HP P G S Y K E Y +GV+
Sbjct: 115 QTALCYGLKPMQQPIRLDHP--------RAPPG--SSYAISKTAGE----YYLELSGVDF 160
Query: 282 RIARIFNTYGPR 293
R+ N GPR
Sbjct: 161 VTFRLANVTGPR 172
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 4e-20
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 26/185 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+++VTGGAG++GSH V +L++ G +V+V+DN G ++ + R E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHRE-ALPRIEKIRIEFYEGDIRDRA 59
Query: 178 LLE-------VDQIYHLACPASPVHYKY------NPVKTIKTNVMGTLNMLGLAKRVGAK 224
L+ +D + H A K P+K NV+GTLN+L + G K
Sbjct: 60 ALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK 113
Query: 225 -FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRI 283
F+ +S++ VYG+P P E P+ + Y K E + D + G+ I
Sbjct: 114 NFVFSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYVI 168
Query: 284 ARIFN 288
R FN
Sbjct: 169 LRYFN 173
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 4e-20
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+++VTGGAG++GSH V +L+ G EV+V+DN G K L +F+ D+++
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIAL----LKLQFKFYEGDLLDRA 57
Query: 178 LLEVDQIYHLACPASPVH---YKY------NPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
LL ++ + VH NP+K NV+GTLN++ + G K F+
Sbjct: 58 LL--TAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIF 115
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+ST+ VYG+P P ET P+ + Y K +E + D + +V I R F
Sbjct: 116 SSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYF 170
Query: 288 NTYG 291
N G
Sbjct: 171 NVAG 174
|
Length = 329 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 5e-19
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI------RH 171
R+++ GG GF+GSHLVD L++ G +V V D R + + I R
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFD-----RSIPP-YELPLGGVDYIKGDYENRA 54
Query: 172 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK--FLLTS 229
D+ L+ +D + HLA +P NP+ I+TNV T+ +L G +S
Sbjct: 55 DLES-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113
Query: 230 TSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
VYG P + P E+ PI S Y K E Y G++ + RI N
Sbjct: 114 GGTVYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 290 YGPR 293
YGP
Sbjct: 169 YGPG 172
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 22/192 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID---NFFTGRKDNLVH--HFRNPRFELIRHD 172
++TG G GS+L + L+++G EV I + F + +L H +PR L D
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 173 VVEP-----ILLEV--DQIYHLACPAS-PVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-- 222
+ + IL EV D+IY+LA + V ++ P T + +GTL +L + +G
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGEK 122
Query: 223 -AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
+F STSE+YG E PQKET P RS Y K A +T++Y G+
Sbjct: 123 KTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLFA 177
Query: 282 RIARIFNTYGPR 293
+FN P
Sbjct: 178 CNGILFNHESPL 189
|
Length = 345 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-16
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLV----HHF--RNPRFELIR 170
I+VTGGAGF+GS+LV L +RG +++V+DN G K NLV + ++ + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 171 HDVVEPILLEVDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+++ I+H AC + + + N T +L +F+ S
Sbjct: 62 KGDENF---KIEAIFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 230 TSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD---YHRGAGVEVRIA-- 284
++ VYG+ ++ N+ P+ + Y K L D G V ++
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPL---NVYGYSK-----LLFDQWARRHGKEVLSQVVGL 167
Query: 285 RIFNTYGPR 293
R FN YGPR
Sbjct: 168 RYFNVYGPR 176
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-14
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-------EL 168
+LRI +TG GF+ SH+ +L G +I D K N H F +L
Sbjct: 21 KLRICITGAGGFIASHIARRLKAEGHYIIASD-----WKKN--EHMSEDMFCHEFHLVDL 73
Query: 169 IRHDVVEPILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FL 226
+ + VD +++LA + + + N + N M + NML A+ G K F
Sbjct: 74 RVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF 133
Query: 227 LTSTSEVYGDPLEHPQKETYWG----NVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
S++ +Y E Q ET + P + Y K E L Y + G+E R
Sbjct: 134 YASSACIYP---EFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECR 190
Query: 283 IARIFNTYGPRMCLDDGR 300
I R N YGP GR
Sbjct: 191 IGRFHNIYGPFGTWKGGR 208
|
Length = 370 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-14
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTG GF+GS+LV L+ +G V R + E++ D+ +
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA-----LVRSGSDAVLLDGLPVEVVEGDLTDAAS 55
Query: 179 L-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L D+++HLA S + +TNV GT N+L A G + + TS+
Sbjct: 56 LAAAMKGCDRVFHLAAFTSLWAKDRK--ELYRTNVEGTRNVLDAALEAGVRRVVHTSSIA 113
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267
G P + ET N + Y K AE
Sbjct: 114 ALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAE 146
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-13
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTGGAGF+GS+LV L +RG +++V+DN G H F N +I + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDG------HKFLNLADLVIADYIDKED 54
Query: 178 LLE---------VDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
L+ ++ I+H AC + + ++ N + +L G F+
Sbjct: 55 FLDRLEKGAFGKIEAIFHQGACSDTTET---DGEYMMENNYQYSKRLLDWCAEKGIPFIY 111
Query: 228 TSTSEVYGDPLEHPQKET--YWGNVNPIGE-RSCYDE-GKRTAETLTMDYHRGAGVEVRI 283
S++ YGD E +E +N G + +D+ +R + G+
Sbjct: 112 ASSAATYGDG-EAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSAQV-VGL---- 165
Query: 284 ARIFNTYGPR 293
R FN YGPR
Sbjct: 166 -RYFNVYGPR 174
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 5e-13
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I++TGGAGF+GS LV +I+ D V+V+D + G +L ++ RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA---------- 218
L D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
K+ +F ST EVYGD H + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGP 292
+ I N YGP
Sbjct: 180 LPTLITNCSNNYGP 193
|
Length = 355 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-13
Identities = 57/213 (26%), Positives = 84/213 (39%), Gaps = 53/213 (24%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDN-----FFTGRKDNLVHHFRNPRFELIRH 171
I+VTGGAG +GS LV +++ G ++IV D R+ F + + I
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELR--SRFPHDKLRFIIG 61
Query: 172 DVVEPILL-------EVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLA 218
DV + L D ++H A K NP + IKTNV+GT N++ A
Sbjct: 62 DVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDAA 115
Query: 219 KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA 277
G KF+ ST + VNP+ + KR AE L + + +
Sbjct: 116 IENGVEKFVCISTDKA----------------VNPV---NVMGATKRVAEKLLLAKNEYS 156
Query: 278 G-VEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309
+ R N G R G V+ F Q+
Sbjct: 157 SSTKFSTVRFGNVLGSR-----GSVLPLFKKQI 184
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI-------VIDNFF-TGRKDNLVHHFRNPRFELI 169
R++VTG GF GS L L + G +VI N F DN + R I
Sbjct: 6 RVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRGD----I 61
Query: 170 R-HDVVEPILLEV--DQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVG-A 223
R + + + E + ++HLA A P V Y +PV+T +TNVMGT+N+L + G
Sbjct: 62 RDLNALREAIREYEPEIVFHLA--AQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSV 119
Query: 224 K-FLLTSTSEVYGDPLEHPQKETYWGNV--NPIGERSCYDEGKRTAETLTMDYHR----- 275
K + ++ + Y + KE WG +P+G Y K AE + Y
Sbjct: 120 KAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYRNSFFNP 173
Query: 276 ----GAGVEVRIARIFNTYG 291
G+ + AR N G
Sbjct: 174 ENYGKHGIAIASARAGNVIG 193
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 119 IVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
I++TG AGF+ SH+ ++LI +++V+D + NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 176 PILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
L+ +D I H A + N + K N+ GT +L K G +F+
Sbjct: 69 ADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYGDPLEHPQKETYWGNV--------NPIGERSCYDEGKRTAETLTMDYHRGAG 278
ST EVYG+ E + GN NP Y K AE L M Y R G
Sbjct: 129 HVSTDEVYGETDE----DADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYG 178
Query: 279 VEVRIARIFNTYGP 292
+ V R N YGP
Sbjct: 179 LPVITTRGNNVYGP 192
|
Length = 668 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 20/165 (12%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+VTGG GF+G H+V L+ G+ EV V D F+ + + I DV
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITY--IEGDVTDKQ 58
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ L D + H A V K +K NV GT N+L + G + L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 232 EV-----YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271
EV YG P+ + + T + + Y E K AE L +
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVL 158
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
++I+VTGGAGF+GS +V +I + D V+ +D + G ++L + R+ D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 175 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA--------- 218
+ L+ D + HLA + P I+TN++GT +L A
Sbjct: 61 DRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDE 120
Query: 219 -KRVGAKFLLTSTSEVYGDPLEHP------QKETYWGNVNPIGERSCYDEGKRTAETLTM 271
K+ +F ST EVYGD L HP ++ + S Y K +++ L
Sbjct: 121 DKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGP 292
+ R G+ + N YGP
Sbjct: 180 AWLRTYGLPTIVTNCSNNYGP 200
|
Length = 352 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLV---HHFRNPRFELIRHDV 173
+TG G GS+L + L+++G EV + +F T R +++ H+ R +L D+
Sbjct: 5 ITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDL 64
Query: 174 VEPILL-------EVDQIYHLACPASPVHYKYN-PVKTIKTNVMGTLNML------GLAK 219
+ L + +IY+LA S V + P T + +GTL +L GL K
Sbjct: 65 TDSSNLRRIIDEIKPTEIYNLAA-QSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIK 123
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
V KF STSE+YG E PQ ET P RS Y K A +T++Y G+
Sbjct: 124 SV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWITVNYREAYGL 176
Query: 280 EVRIARIFNTYGPR 293
+FN PR
Sbjct: 177 FAVNGILFNHESPR 190
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-11
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 45/194 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP- 176
+++VTG GF+G LVDKL+ RG+EV + V + N ++ ++ +
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRI-----------AVRNAENAEPSVVLAELPDID 49
Query: 177 ----ILLEVDQIYHLACPASPVHYKYNPVKT-----IKTNVMGTLNMLGLAKRVGAK-FL 226
+ L VD + HL A+ VH + K N T + A R G K F+
Sbjct: 50 SFTDLFLGVDAVVHL---AARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFV 106
Query: 227 LTSTSEVYG-----DPLEH---PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
S+ +V G P + P + +G K AE ++ G
Sbjct: 107 FLSSVKVNGEGTVGAPFDETDPPAPQDAYG------------RSKLEAERALLELGASDG 154
Query: 279 VEVRIARIFNTYGP 292
+EV I R YGP
Sbjct: 155 MEVVILRPPMVYGP 168
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR----KDNLVH----HFRNPRFELI 169
++VTG GF+ SH+V++L+ G +V T R L N R E +
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVR-----GTVRSLSKSAKLKALLKAAGYNDRLEFV 55
Query: 170 RHDVVEPI---------LLEVDQIYHLACPASPVHYKYNPVKT--IKTNVMGTLNMLGLA 218
+V+ + L VD + H+ ASP + + I V GTLN+L A
Sbjct: 56 ---IVDDLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAA 109
Query: 219 KRVGA--KFLLTSTSEVYGDPLEHPQKETY----WGNVN 251
K G+ + +LTS+ GDP + + W ++
Sbjct: 110 KAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 49/197 (24%), Positives = 72/197 (36%), Gaps = 39/197 (19%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIV----------------IDNFFTGRKDNLVHHFRNP 164
+TG GF+G L++KL+ EV + + +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKAL--E 58
Query: 165 RFELIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
R + D+ EP + EVD I H A A+ V++ TNV+GT
Sbjct: 59 RIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--AT-VNFVEPYSDLRATNVLGTRE 115
Query: 214 MLGLAKRVGAK-FLLTSTS----EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268
+L LAK++ F ST+ E G E P K G + Y + K AE
Sbjct: 116 VLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWLAEQ 175
Query: 269 LTMDYHRGAGVEVRIAR 285
L + G+ V I R
Sbjct: 176 LVREAAG--GLPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 21/189 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVV 174
+R++VTGG+G++GSH +L+ G +V+++DN ++ L + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 175 EPILLEVDQIYHLACPASPVHYK---------YNPVKTIKTNVMGTLNMLGLAKRVGAK- 224
LL +I H + +H+ P++ NV GTL ++ + K
Sbjct: 61 NEALL--TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRGA-GVEVR 282
+ +S++ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 119 LIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 283 IARIFNTYG 291
+ R FN G
Sbjct: 174 LLRYFNPVG 182
|
Length = 338 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 9e-11
Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
R ++TG AGF+GS L+++L+ VI +DNF TG + NL V + RF I+
Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQG 76
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKF 225
D+ + VD + H A S +P+ T N+ G LNML A+ + F
Sbjct: 77 DIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSF 136
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
++S YGD + P+ E G P+ S Y K E + R R
Sbjct: 137 TYAASSSTYGDHPDLPKIEERIG--RPL---SPYAVTKYVNELYADVFARSYEFNAIGLR 191
Query: 286 IFNTYGPR 293
FN +G R
Sbjct: 192 YFNVFGRR 199
|
Length = 348 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 29/205 (14%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP---RFEL----I 169
L I + G GF+GSHL +KL+ ++ + + + +L+ P R + I
Sbjct: 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74
Query: 170 RHDV-VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
+HD +E ++ D +LA +P Y P+ TI +N + L ++ + +
Sbjct: 75 KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134
Query: 229 STSEVYGD------PLEHP--QKETYW---GNVNPI------GERSCYDEGKRTAETLTM 271
ST EVYG P +HP Q ++ + +P +R Y K+ E L
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLI- 193
Query: 272 DYHRGA--GVEVRIARIFNTYGPRM 294
Y GA G+E I R FN GPRM
Sbjct: 194 -YAEGAENGLEFTIVRPFNWIGPRM 217
|
Length = 386 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 43/200 (21%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-------------FTGRK-DNLVHHFRN 163
I+VTGGAG++GSH V +L+ G +V+VIDN G DNLV H
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH--- 63
Query: 164 PRFELIRHDVVEPILLE--VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNM 214
+ +L + +E + D + H A A P+ Y N N++GT+N+
Sbjct: 64 -KVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINL 115
Query: 215 LGLAKRVGAKFLLTSTS-EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY 273
L + + G K L+ S+S VYG P E P E + P+ + Y K E + D
Sbjct: 116 LEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICRDI 170
Query: 274 HRGAGVEVRIA--RIFNTYG 291
H + E +I R FN G
Sbjct: 171 HA-SDPEWKIILLRYFNPVG 189
|
Length = 352 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVID---NFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ VTGG GF+G HLV +L++ G +V+V+ + + R ++ D+ +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60
Query: 176 PIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
P L +VD + H A AS ++ +TN+ GT ++L LA R+ +
Sbjct: 61 PNLGLSAAASRELAGKVDHVIHCA--AS-YDFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117
Query: 225 -FLLTSTSEVYG--------DPLEHPQK 243
F ST+ V G L Q
Sbjct: 118 RFHYVSTAYVAGNREGNIRETELNPGQN 145
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFEL----IRH- 171
++VTGG+GF G LV +L++R G V D G + +++P E I
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA---LSAWQHPNIEFLKGDITDR 57
Query: 172 DVVEPILLEVDQIYHLACPASPVHYK--YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLT 228
+ VE L D ++H A + Y V NV GT N+L +R G KF+ T
Sbjct: 58 NDVEQALSGADCVFHTAAIVPLAGPRDLYWEV-----NVGGTQNVLDACQRCGVQKFVYT 112
Query: 229 STSEVY--GDPLEHPQKETYWGNVNPIGERS--CYDEGKRTAETLTMDYHRGAGVEVRIA 284
S+S V G + + + P Y E K AE + ++ + +
Sbjct: 113 SSSSVIFGGQNIHNGDETL------PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCAL 166
Query: 285 RIFNTYGPR 293
R +GP
Sbjct: 167 RPAGIFGPG 175
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 68/237 (28%)
Query: 106 GRVPVGIGRRRL-------RIVVTGGAGFVGSHLVDKLIDRGDEVIV-----------ID 147
GR PV + + ++VTGG G +GS L +++ + I+ ID
Sbjct: 233 GRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292
Query: 148 NFFTGRKDNLVHHFRNPRFEL--IR-HDVVEPIL--LEVDQIYHLACPASPVHYK----- 197
+ L RF + +R D VE + +VD ++H A K
Sbjct: 293 MELREKFPEL-----KLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA------LKHVPLV 341
Query: 198 -YNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255
YNP + IKTNV+GT N+ A + G KF+L ST + VNP
Sbjct: 342 EYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA----------------VNPT-- 383
Query: 256 RSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309
+ KR AE L +R G G + R N G R G V+ F Q+
Sbjct: 384 -NVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQI 434
|
Length = 588 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF------FTGRKDNLVHHFRNPRFELI 169
++++TG +GFVG L ++L+ + +I+ID R + P
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQIAGDLAVPA---- 57
Query: 170 RHDVVEPILLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++E + D ++HLA S + + + NV GT N+L ++ G +F+
Sbjct: 58 ---LIEALANGRPDVVFHLAAIVSG-GAEADFDLGYRVNVDGTRNLLEALRKNGPKPRFV 113
Query: 227 LTSTSEVYGDPLEHP-QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
TS+ VYG PL +P T ++P S Y K E L DY R V+ R R
Sbjct: 114 FTSSLAVYGLPLPNPVTDHT---ALDPA---SSYGAQKAMCELLLNDYSRRGFVDGRTLR 167
Query: 286 IFNTYGPRMCLDDGR 300
+ P +C+ GR
Sbjct: 168 L-----PTVCVRPGR 177
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-09
Identities = 56/200 (28%), Positives = 78/200 (39%), Gaps = 41/200 (20%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVH--HFRNPRFELIRH--- 171
+TG G GS+L + L+ +G EV I NF T R D++ H R +L H
Sbjct: 11 ITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL--HYGD 68
Query: 172 -----------DVVEPILLEVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNML---- 215
D ++P D++Y+LA S V + P T G L +L
Sbjct: 69 LSDASSLRRWLDDIKP-----DEVYNLAA-QSHVAVSFEMPDYTADVVATGALRLLEAVR 122
Query: 216 --GLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY 273
G K+ +SE+YG PQ ET P RS Y K A T++Y
Sbjct: 123 LHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFHPRSPYAVAKVAAHWYTVNY 176
Query: 274 HRGAGVEVRIARIFNTYGPR 293
G+ +FN PR
Sbjct: 177 REAYGLFACNGILFNHESPR 196
|
Length = 340 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-09
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 33/203 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV---------------IDNFFTGRKDNLVHHFR 162
+++TG GF+G++L+ +L+ R + + + + NL
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 163 NPRFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGT 211
R +++ D+ +P L EVD I H A+ V++ Y + NV+GT
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPANVLGT 117
Query: 212 LNMLGLA-KRVGAKFLLTSTSEVYGDPLEHPQKETYWGN--VNPIGERSCYDEGKRTAET 268
+L LA ST V+ + + + + G + Y + K AE
Sbjct: 118 KELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWVAEK 177
Query: 269 LTMDYHRGAGVEVRIARIFNTYG 291
L + G+ V I R N +G
Sbjct: 178 LLREAAN-RGLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--------VIDNF-FTGRKDNLVHHFRNPR-FE 167
+++VTG GF GS L L++ G EV + F + HF + R
Sbjct: 6 KVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA 65
Query: 168 LIRHDV--VEPILLEVDQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA 223
+R + +P + ++HLA A P V Y +P++T +TNVMGT+N+L + +G+
Sbjct: 66 KLRKAIAEFKP-----EIVFHLA--AQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGS 118
Query: 224 K--FLLTSTSEVYGDPLEHPQKETYWG--NVNPIGERSCYDEGKRTAETLTMDY 273
+ ++ + Y + E WG +P+G Y K AE + Y
Sbjct: 119 VKAVVNVTSDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASY 166
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 55/179 (30%), Positives = 72/179 (40%), Gaps = 25/179 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFEL------- 168
RI++TGG G +GS L L R D VI D RK H + FE
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASDI----RKPP-AHVVLSGPFEYLDVLDFK 55
Query: 169 -IRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
+ VV ++ I HLA S V K NP N+ G N+L LA+ + +
Sbjct: 56 SLEEIVVN---HKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIFV 111
Query: 228 TSTSEVYGDPLEHPQKETYWGNV-NPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
ST +G P+ T + P R+ Y K AE L YH GV+ R R
Sbjct: 112 PSTIGAFGP--TTPRNNTPDDTIQRP---RTIYGVSKVAAELLGEYYHHKFGVDFRSLR 165
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-08
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I+VTG G VGS +V L RG E +V F K+ +L + V
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV----FRTSKE----------LDLTDQEAVRAF 46
Query: 178 LLEV--DQIYHLA--------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFL 226
+ D + HLA P + + N++ N++ A R G K +
Sbjct: 47 FEKEKPDYVIHLAAKVGGIVANMTYPADFLRD-------NLLINDNVIHAAHRFGVKKLV 99
Query: 227 LTSTSEVYGDPLEHPQKETY 246
+S +Y D P E+
Sbjct: 100 FLGSSCIYPDLAPQPIDESD 119
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 39/203 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR------------------------GDEVIVIDNFFTGR 153
+++TG GF+G++L+ +L+DR D D R
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61
Query: 154 KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
+ + P L E + VD I H A+ V++ + + NV+GT
Sbjct: 62 VEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTAE 117
Query: 214 MLGLAKRVGAKFL-LTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272
+L LA K L S+ V + + + L
Sbjct: 118 VLRLAATGKPKPLHYVSSISVGETEYYSNFTVDF----------DEISPTRNVGQGLAGG 167
Query: 273 YHRGAGVEVRIARIFNTYGPRMC 295
Y R V ++ R G +
Sbjct: 168 YGRSKWVAEKLVREAGDRGLPVT 190
|
Length = 382 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 121 VTGGAGFVGSHLVDKLIDRG----------DEVIVIDNFFTGRKDNLVHHFRNPRFELIR 170
VTG +GFV SH+V++L++RG +V ++ D +L
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVN--HLLDLDAKPGRLELAVADLTD 60
Query: 171 HDVVEPILLEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
+ ++ ++H+ A+PV + K P + IK + GTLN L A + +F+
Sbjct: 61 EQSFDEVIKGCAGVFHV---ATPVSFSSKD-PNEVIKPAIGGTLNALKAAAAAKSVKRFV 116
Query: 227 LTST 230
LTS+
Sbjct: 117 LTSS 120
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 26/131 (19%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI---DNF--FTGRKDNLVHHFRNP--RFEL--I 169
++VTGG G +GS L +++ + I++ D F + R++ L + +P RF + +
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQE-LRQEYNDPKLRFFIGDV 59
Query: 170 R-HDVVEPIL--LEVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAKR 220
R + +E + VD ++H A K YNP++ IKTNV+GT N+ A
Sbjct: 60 RDRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIE 113
Query: 221 VGAK-FLLTST 230
G + F+L ST
Sbjct: 114 NGVEKFVLIST 124
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFR-----NPRFELIRHDV 173
VTG +GF+GS LV +L+ RG V V D + V H R +L + D+
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRDP----GDEKKVAHLLELEGAKERLKLFKADL 58
Query: 174 VEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++ + D ++H+A P + + I+ V GTLN+L + + + +
Sbjct: 59 LDYGSFDAAIDGCDGVFHVASPVDF-DSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVV 117
Query: 227 LT-STSEVYGDPLEHPQK---ETYWGNVN 251
T S + V +P K E+ W +++
Sbjct: 118 FTSSVAAVVWNPNRGEGKVVDESCWSDLD 146
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDV-- 173
+VTGG GF+G H++ L++R + E+ V+D F + I D+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 174 VEPILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TS 229
+ + V + H A V N + + NV GT +L + K L+ TS
Sbjct: 63 LSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVYTS 121
Query: 230 TSEV-----YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271
+ EV G P+ + ++T + + + Y K AE + +
Sbjct: 122 SIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIVL 164
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ P +RR R+++ G GF+G+HL ++L+ + EV +D + +
Sbjct: 301 GARLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD-----IGSDAISR 355
Query: 161 FR-NPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
F +PRF + D+ +E + + D + L A+P+ Y NP++ + + L
Sbjct: 356 FLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK 415
Query: 214 MLGLAKRVGAKFLLTSTSEVYG 235
++ + + + STSEVYG
Sbjct: 416 IIRYCVKYNKRIIFPSTSEVYG 437
|
Length = 660 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I++ G GF+G L +L+++G EV ++ R + ++ D+ +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLV-----RNTKRLSKEDQEPVAVVEGDLRDLDS 55
Query: 179 L-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L VD + HLA +P + + +V GT N+L AK G K F+ S+
Sbjct: 56 LSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISSLG 109
Query: 233 VYGDPLEHPQKE 244
YGD E +
Sbjct: 110 AYGDLHEETEPS 121
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 36/183 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++I++TG G +G+ L + + EVI D ++ D V
Sbjct: 1 MKILITGANGQLGTELR-RALPGEFEVIATDR---------------AELDITDPDAVLE 44
Query: 177 ILLEV--DQIYHLA------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
++ E D + + A S P N G N+ A VGA+ +
Sbjct: 45 VIRETRPDVVINAAAYTAVDKAES------EPELAFAVNATGAENLARAAAEVGARLVHI 98
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST V+ P KET NP+ Y K E + +R + ++
Sbjct: 99 STDYVFDGEKGGPYKET--DTPNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYG 152
Query: 289 TYG 291
YG
Sbjct: 153 EYG 155
|
Length = 281 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
++++ G GF+G HL ++++ D EV +D + D L +PR D+
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57
Query: 174 ----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+E + + D I L A+P Y P++ + + L ++ A + G + S
Sbjct: 58 NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117
Query: 230 TSEVYG-------DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
TSEVYG DP P +G +N R Y K+ + + Y G+
Sbjct: 118 TSEVYGMCPDEEFDPEASP---LVYGPINK--PRWIYACSKQLMDRVIWAYGMEEGLNFT 172
Query: 283 IARIFNTYGPRMCLDD--------GRVVSNFVAQV 309
+ R FN GP LD RVV+ F+ +
Sbjct: 173 LFRPFNWIGPG--LDSIYTPKEGSSRVVTQFLGHI 205
|
Length = 347 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 46/197 (23%), Positives = 66/197 (33%), Gaps = 59/197 (29%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL----VHHFRNPR------FE 167
+I++ GG F+G LV++L+ G +V V F GR V H R E
Sbjct: 2 KILIIGGTRFIGKALVEELLAAGHDVTV---FNRGRTKPDLPEGVEHIVGDRNDRDALEE 58
Query: 168 LIRH---DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
L+ DVV VD +P L K +
Sbjct: 59 LLGGEDFDVV------VDT-----IAYTPRQ---------------VERALDAFKGRVKQ 92
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC--------YDEGKRTAETLTMDYHRG 276
++ S++ VY P E+ P+ E Y GKR AE + ++
Sbjct: 93 YIFISSASVYLKPGR-VITES-----TPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAAF 146
Query: 277 AGVEVRIARIFNTYGPR 293
VR I YGP
Sbjct: 147 PYTIVRPPYI---YGPG 160
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 43/180 (23%), Positives = 64/180 (35%), Gaps = 29/180 (16%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VE 175
V G +G +G + +L RG +V ++ +G K P E++ D V
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSR--SGSKLA-----WLPGVEIVAADAMDASSVI 56
Query: 176 PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
D IYH A PA + P + NV+ A+ GAK +L +YG
Sbjct: 57 AAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVYMYG 108
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGK-RTA-ETLTMDYHRGAGVEVRIARIFNTYGPR 293
P E P + G+ R E + H + I R + YGP
Sbjct: 109 PQAGSPITEDT--PFQPTTRK-----GRIRAEMEERLLAAHAKGDIRALIVRAPDFYGPG 161
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--- 173
+V GG+GF+G HLV++L+ RG+ V V D T D + R + D+
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELD----PSSSGRVQFHTGDLTDP 56
Query: 174 --VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLT 228
+E E + ++H ASP H N K NV GT N++ ++ G K + T
Sbjct: 57 QDLEKAFNEKGPNVVFHT---ASPDH-GSNDDLYYKVNVQGTRNVIEACRKCGVKKLVYT 112
Query: 229 STSEV 233
S++ V
Sbjct: 113 SSASV 117
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 119 IVVTGGAGFVGSHLVDKL--IDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
I+VTG AG +G L +L R V +D R+ P+ E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDR----RRPPGSP----PKVEYVRLDIRDP 52
Query: 177 ------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFL-LTS 229
E D + HLA P + + + NV GT N+L G + +TS
Sbjct: 53 AAADVFREREADAVVHLAFILDPPR---DGAERHRINVDGTQNVLDACAAAGVPRVVVTS 109
Query: 230 TSEVYG 235
+ VYG
Sbjct: 110 SVAVYG 115
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++++VTG GFVGS +V L+++G+EV V+ R + + E++ D+ +P
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLV-----RPTSDRRNLEGLDVEIVEGDLRDP 55
Query: 177 ILLE-----VDQIYHLACPASPVHYKY---NPVKTIKTNVMGTLNMLGLAKRVGAK 224
L ++H+A Y+ +P + NV GT N+L A G +
Sbjct: 56 ASLRKAVAGCRALFHVA-----ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE 106
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-06
Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 53/185 (28%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
++VTGG+G +G + L RG +V+V+ R+D +VH I D
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----RRDVVVH------NAAILDDG---- 45
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK-----RVGAKFLLTSTSE 232
+D + I+ NV+GT +L A+ + +F+L S+
Sbjct: 46 -RLIDLT------------GSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNT 289
G Y K + L + G G+
Sbjct: 93 GLFG---------APGLGG-------YAASKAALDGLAQQWASEGWGNGLPATAVACGTW 136
Query: 290 YGPRM 294
G M
Sbjct: 137 AGSGM 141
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 30/151 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----------HFRNPRF 166
+++++ GG G+ G L RG EV ++DN R D + H R +
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 167 --------ELIRHDVVEPILL-------EVDQIYHLAC-PASPVHYK--YNPVKTIKTNV 208
E D + L E D + H A ++P + T NV
Sbjct: 61 KELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNV 120
Query: 209 MGTLNMLGLAKRVG--AKFLLTSTSEVYGDP 237
+GTLN+L K + T YG P
Sbjct: 121 IGTLNLLFAIKEFDPDCHLVKLGTMGEYGTP 151
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR 162
+I+VTG GFVG +V +L+ RG EV R
Sbjct: 2 KILVTGATGFVGGAVVRELLARGHEVRAA-----VRNPEAAAALA 41
|
Length = 275 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 39/182 (21%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPR--FELIRH-- 171
+I++TG G +G LV L +RG EVI TGR + +P E IR
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEVI-----GTGRSRASLFKLDLTDPDAVEEAIRDYK 55
Query: 172 -DVVEPI----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFL 226
DV+ I VD+ +P + NV+ N+ AK VGA+ +
Sbjct: 56 PDVI--INCAAYTRVDKCES------------DPELAYRVNVLAPENLARAAKEVGARLI 101
Query: 227 LTSTSEVY-GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
ST V+ G + P KE NP+ Y + K E ++ + + +R +
Sbjct: 102 HISTDYVFDGK--KGPYKEE--DAPNPLN---VYGKSKLLGEVAVLNANPRYLI-LRTSW 153
Query: 286 IF 287
++
Sbjct: 154 LY 155
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLV 158
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV 43
|
Length = 308 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE--P 176
+++TGG G G+ ++ + +D + I I + ++D++ + N + + DV +
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRKKYNNSKLKFYIGDVRDYRS 66
Query: 177 ILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML--GLAKRVGAKFLLTSTS 231
IL VD IYH A +++P++ +KTNV+GT N+L +A V L++
Sbjct: 67 ILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTDK 126
Query: 232 EVY 234
VY
Sbjct: 127 AVY 129
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 33/194 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TG G +G LV +L G V+ + +L + +E +
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVA---------------LTRSQLDLTDPEALERL 45
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
L + D + + A + +P K N + N+ A R GA+ + ST V+
Sbjct: 46 LRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFD 105
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ P +E NP+ Y + K E A + VR + ++ G R
Sbjct: 106 GEGKRPYRED--DATNPLN---VYGQSKLAGEQAVRAAGPNALI-VRTSWLYGGGGGR-- 157
Query: 296 LDDGRVVSNFVAQV 309
NFV +
Sbjct: 158 --------NFVRTM 163
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 44/177 (24%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++I++TG GF+G +L+ +L ++ D+ I FF R+ + EL +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDDDI----FFYDRE--------SDESEL------DD 42
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK--FLLTSTSEVY 234
L D I+HLA P + NV T +L R G K LL+S+ +
Sbjct: 43 FLQGADFIFHLAGVNRPKD----EAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQAA 98
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
D NP Y + K AE L +Y R G V I R+ N +G
Sbjct: 99 LD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFG 135
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI------------DNFFTGRKDNLVHHF--RNP 164
+++TG GF+G++L+++L+ R + VI + + + H
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLARE 61
Query: 165 RFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
R E++ D+ EP L VD I H + V++ Y + NV+GT
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENVDTIVH---NGALVNWVYPYSELRGANVLGTRE 118
Query: 214 MLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272
+L LA AK ST V E P G Y + K AE L
Sbjct: 119 VLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELLV-- 176
Query: 273 YHRGA---GVEVRIAR 285
R A G+ V I R
Sbjct: 177 --REASDRGLPVTIVR 190
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 38/192 (19%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTG G +G L L +RG EV+ R + +L + V ++
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVA-----LDRPE----------LDLTDPEAVAALV 45
Query: 179 LEV--DQIYHLACPA-SPVH-YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
E D + + A A + V + P N +G N+ GA + ST V+
Sbjct: 46 REARPDVVVNAA--AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVF 103
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
P +E P+ Y K E + + + +R A ++ YG
Sbjct: 104 DGAKGGPYRED--DPTGPLNV---YGRTKLAGEQAVLAANPRHLI-LRTAWVYGEYGN-- 155
Query: 295 CLDDGRVVSNFV 306
NFV
Sbjct: 156 ---------NFV 158
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
+IV+TGG GF+G L +L G EV+V+
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVVL 29
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVI 144
+++ VTG GF+GS +V +L+ G EV+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAAGHEVV 28
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
I++TGG GF+G L +L RG EV ++
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL 28
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-- 176
++VTG G+VG LV +L+ G +V + + L + R ++R D+ +P
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRAL----VRSPEKLADRPWSERVTVVRGDLEDPES 56
Query: 177 ---ILLEVDQIYHL 187
L +D Y+L
Sbjct: 57 LRAALEGIDTAYYL 70
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 29/139 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV---IDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
R VTGG GF+G LV +L+DR E V + R + L ++ R + D+
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLT 61
Query: 175 EPIL----------LEVDQIYHLA------CPASPVHYKYNPVKTIKTNVMGTLNMLGLA 218
EP L ++D + HLA NV GT N++ LA
Sbjct: 62 EPGLGLSEADIAELGDIDHVVHLAAIYDLTADEE---------AQRAANVDGTRNVVELA 112
Query: 219 KRVGAK-FLLTSTSEVYGD 236
+R+ A F S+ V GD
Sbjct: 113 ERLQAATFHHVSSIAVAGD 131
|
Length = 657 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI------DNFFTGRK-------DNLVHHFR-- 162
+++TG GF+G L++KL+ ++ I + + + D L R
Sbjct: 2 SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL 61
Query: 163 NPRFE----LIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTN 207
NP FE I D+ EP ++ EV+ I H A A+ V + + + N
Sbjct: 62 NPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--AT-VTFDERLDEALSIN 118
Query: 208 VMGTLNMLGLAKRV--GAKFLLTSTSEVYGD 236
V+GTL +L LAKR F+ ST+ V GD
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
I++TGG G +G L +L G +V ++
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTIL 28
|
Length = 297 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV 145
+ V G GF+G ++V++L RG +VIV
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIV 29
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.002
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVE 175
+ VTG +G++ S +V L+ RG V T RK L R +L + D++E
Sbjct: 8 VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLE 67
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKT--IKTNVMGTLNMLGLAKRVGA--KFL 226
E D ++H ASPV + +T I + GT+N+L K + + +
Sbjct: 68 ESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVI 124
Query: 227 LTSTSE--VYGDPLEHPQ---KETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVE 280
LTS++ ++ P ET++ + + E ++ Y K AE ++ + G++
Sbjct: 125 LTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNGID 184
Query: 281 VRIARIFNTYGP 292
+ + GP
Sbjct: 185 MVVLNPGFICGP 196
|
Length = 322 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEP 176
+++V G G VG H+V +L+DRG +V + R+P E + E
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL--------------VRDPSQAEKLEAAGAEV 46
Query: 177 ILLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
++ ++ LA + +T + G +N++ AK+ G K F+L
Sbjct: 47 VVGDLTDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVL 106
Query: 228 TST 230
S+
Sbjct: 107 VSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.97 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.97 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.95 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.95 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.95 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.95 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.95 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.95 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.95 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.95 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.94 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.94 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.94 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.94 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.94 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.94 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.94 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.93 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.93 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.93 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.93 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.93 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.93 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.93 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.93 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.93 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.92 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.92 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.92 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.92 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.92 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.91 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.91 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.91 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.91 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.91 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.91 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.91 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.91 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.91 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.9 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.9 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.9 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.89 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.87 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.87 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.85 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.84 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.84 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.83 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.82 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.82 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.82 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.82 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.81 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.81 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.81 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.81 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.8 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.8 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.8 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.8 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.8 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.8 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.8 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.8 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.8 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.8 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.8 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.8 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.8 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.8 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.8 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.79 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.79 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.79 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.79 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.79 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.79 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.78 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.78 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.78 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.78 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.78 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.78 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.78 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.78 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.78 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.78 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.78 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.78 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.78 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.78 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.77 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.77 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.77 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.77 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.77 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.77 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.77 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.77 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.77 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.76 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.76 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.76 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.76 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.76 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.75 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.75 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.75 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.75 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.75 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.75 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.75 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.74 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.74 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.74 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.74 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.74 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.74 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.73 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.73 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.73 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.73 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.72 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.72 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.72 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.72 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.72 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.72 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.72 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.72 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.71 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.71 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.71 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.7 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.7 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.69 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.69 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.68 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.68 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.68 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.68 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.68 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.67 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.66 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.65 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.65 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.64 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.64 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.63 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.63 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.63 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.62 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.62 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.61 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.6 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.59 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.56 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.56 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.55 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.55 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.55 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.53 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.51 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.48 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.45 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.4 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.39 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.38 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.38 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.35 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.33 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.33 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.3 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.28 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.26 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.25 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.25 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.23 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.18 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.15 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.13 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.12 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.01 | |
| PLN00106 | 323 | malate dehydrogenase | 98.87 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 98.82 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.8 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.72 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.7 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.59 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.54 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.51 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.49 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.34 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.3 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.22 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.17 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.1 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.08 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 98.06 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 97.98 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.95 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.9 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.9 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.89 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.84 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.82 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.8 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.77 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.75 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.7 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.68 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.68 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.66 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.64 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.64 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.63 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.6 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.6 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.59 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.59 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.58 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.53 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.47 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.46 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.45 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.39 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.34 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.31 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.3 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.3 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.29 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.29 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.29 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.26 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.25 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.22 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.21 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.2 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.17 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.13 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.12 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.12 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.08 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.08 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.08 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.04 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.03 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.03 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.03 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.02 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.01 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.01 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.97 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.97 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.96 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.91 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.91 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.84 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.81 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 96.79 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.77 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.67 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.67 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.66 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.66 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.64 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.64 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.64 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.61 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.61 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.61 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.6 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.59 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.56 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.52 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.47 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.46 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.41 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.39 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.33 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.27 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.27 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.27 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.25 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.23 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.21 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.21 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.2 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.19 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.18 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.16 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.12 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.05 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.0 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.97 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.96 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.95 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.91 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.87 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.86 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.85 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.81 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.79 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.77 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.66 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.66 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.58 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.57 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.55 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.44 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.43 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.39 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.35 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 95.35 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.34 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 95.34 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.32 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.29 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.28 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.27 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.26 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.23 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.17 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.15 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.15 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.12 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.09 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.08 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.07 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.03 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.02 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.0 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.0 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.97 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.96 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.93 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.88 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.81 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.77 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.76 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 94.73 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.71 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.66 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 94.59 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.58 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.57 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 94.49 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 94.46 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.39 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.39 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 94.37 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.34 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.34 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.27 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.25 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.2 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.2 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.13 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.12 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.08 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 94.04 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.0 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.99 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.99 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.97 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.97 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 93.96 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.95 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 93.89 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.88 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.76 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 93.74 | |
| PLN02928 | 347 | oxidoreductase family protein | 93.73 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 93.73 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.67 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 93.66 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.65 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.63 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.54 | |
| PLN02494 | 477 | adenosylhomocysteinase | 93.54 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 93.52 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 93.52 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.48 |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=419.20 Aligned_cols=307 Identities=84% Similarity=1.292 Sum_probs=252.0
Q ss_pred ccccCCCcccccccccccCCCCCCCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHHHHhhccccccCCCCCCCCcc
Q 021681 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPILSRLGPPQELHPF 81 (309)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (309)
||||||+++|||+++++.+.++.|+||+.++++|++||++|+++|||++|+|+|++|+++||++.|+.+++++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T PLN02166 3 QLHKQMSVNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTSLI 82 (436)
T ss_pred chhhcCCccccCCCCCCccccCCCCCCCCCCCccccchHHHHHHhhhHHHHHHHHHHHHHHHhhCCccccCCcccccccc
Confidence 99999999999999999888999999977667999999999999999999999999999999999998887776544432
Q ss_pred cccc-hhhh--hhhhhhccccCCCCCCCCCCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc
Q 021681 82 HALT-ANQQ--RQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV 158 (309)
Q Consensus 82 ~~~~-~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~ 158 (309)
..-. .... ................+++|.+...+.|+||||||+||||++|+++|+++|++|+++++..........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~ 162 (436)
T PLN02166 83 TRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLV 162 (436)
T ss_pred ccccccccccCccchhhccccccccccCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhh
Confidence 2200 0000 001111111112345688999999999999999999999999999999999999999986443333332
Q ss_pred cccCCCceEEEeccccccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCC
Q 021681 159 HHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238 (309)
Q Consensus 159 ~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~ 238 (309)
.......++++..|+.+..+.++|+|||+|+.........++...+++|+.||.+|+++|++.++++|++||..||+...
T Consensus 163 ~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~ 242 (436)
T PLN02166 163 HLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 242 (436)
T ss_pred hhccCCceEEEECccccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCC
Confidence 22334578899999999988999999999987655555567888999999999999999999988999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
..+.+|+.|...++..+.+.|+.+|..+|++++.+++..+++++++||++||||+++...+.+++.|+.+
T Consensus 243 ~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~ 312 (436)
T PLN02166 243 EHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 312 (436)
T ss_pred CCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHH
Confidence 7788888776667777888999999999999999988889999999999999999765567788888764
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=385.11 Aligned_cols=301 Identities=69% Similarity=1.124 Sum_probs=241.3
Q ss_pred CCCcccccccccccCCCCCCCCCCCCCCCCCCccccccccchhHHHHHHHHHHHHHHHhhccccccCCCCCCCCccccc-
Q 021681 6 QSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPILSRLGPPQELHPFHAL- 84 (309)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (309)
.|+|+||++++++ +.+++|+|||.|||+|++||+||+++|||++|+|+|++|+++||++.|+++.+++. ...++...
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (442)
T PLN02206 2 ASELINRRHEETQ-PTADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIFPSSSQPSPY-SVDPLSGYG 79 (442)
T ss_pred CccccccCCCCCC-CCCCCCCCCCCCCcccCccHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcCCCCcc-ccccccccc
Confidence 4899999998776 66999999999999999999999999999999999999999999998887554442 11111110
Q ss_pred --chhhhhhhhhhcc------ccCCCCCCCCCCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc
Q 021681 85 --TANQQRQSFQFHR------TSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN 156 (309)
Q Consensus 85 --~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~ 156 (309)
..+-...+..... ...+....+++|.+...++|+||||||+||||++|+++|+++|++|+++++......+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~ 159 (442)
T PLN02206 80 IRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKEN 159 (442)
T ss_pred ccccccccccccceecccccccccccccCCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhh
Confidence 0000000000000 11122446789999999999999999999999999999999999999998764433333
Q ss_pred cccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 157 LVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 157 ~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
....+...+++++.+|+.++.+.++|+|||+|+...+.....++...+++|+.|+.+|+++|++.++++|++||..+|+.
T Consensus 160 ~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 160 VMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred hhhhccCCceEEEECCccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 32333456789999999999999999999999876555555678889999999999999999999889999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
....+.+|+.|...++..+.+.|+.+|.++|.++..+.+.++++++++||++||||+++...+.+++.|+.+
T Consensus 240 ~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~ 311 (442)
T PLN02206 240 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ 311 (442)
T ss_pred CCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHH
Confidence 777788888776667777788999999999999999988889999999999999998765567788887764
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=270.04 Aligned_cols=195 Identities=79% Similarity=1.290 Sum_probs=188.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
.+++|+||||+||||++|+++|..+|+.|+++|....+.+.++...+....++++.+|+..+.+.++|.|||+|++..+.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapasp~ 105 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPASPP 105 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCCCc
Confidence 45799999999999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a 274 (309)
++..++.+++.+|+.||.+++.+|++.++||++.||+.|||++..+|..|++|+.++|.++.++|+..|+++|.++..|+
T Consensus 106 ~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~ 185 (350)
T KOG1429|consen 106 HYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYH 185 (350)
T ss_pred ccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHhC
Q 021681 275 RGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309 (309)
Q Consensus 275 ~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~~ 309 (309)
++.|+.+.|.|++|.|||++++++++++++|+.|+
T Consensus 186 k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~ 220 (350)
T KOG1429|consen 186 KQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQA 220 (350)
T ss_pred cccCcEEEEEeeecccCCccccCCChhhHHHHHHH
Confidence 99999999999999999999999999999999874
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=237.55 Aligned_cols=192 Identities=29% Similarity=0.352 Sum_probs=153.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc------cCCCceEEEecccccc-----ccCC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH------FRNPRFELIRHDVVEP-----ILLE 180 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~------~~~~~v~~~~~Dl~~~-----~~~~ 180 (309)
+..++|+||||||+||||++|+++|+++|++|+++++............ ....++.++.+|+.+. .+++
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 3457789999999999999999999999999999998644322111110 0113577888999875 3578
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
+|+|||+|+.........++...+++|+.||.+|+++|++.++ ++||+||.++||...+.+..|+ .+..|.+.|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y 165 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPY 165 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChh
Confidence 9999999987555445556778899999999999999999987 8999999999997666666665 455677899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHHh
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQ 308 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~~ 308 (309)
+.+|.++|.+++.++..++++++++||++||||++..+. +.+++.++.+
T Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~ 216 (348)
T PRK15181 166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILS 216 (348)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHH
Confidence 999999999999988888999999999999999875332 3577877764
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=220.48 Aligned_cols=169 Identities=35% Similarity=0.596 Sum_probs=152.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc-------CCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~-------~~~D~Vih~A~ 189 (309)
|+||||||+||||++.+.+|++.|++|+++|+......+.+... ...++.+|+.|..+ .++|.|||+||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 58999999999999999999999999999999887776655432 16788999988732 35999999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
......+-.++.+.++.|+.||.+|+++|++.++ +|||-||+++||.+..-|+.|+ .+..|.++||.||++.|+
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sKlm~E~ 151 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSKLMSEE 151 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHHHHHHH
Confidence 8888888889999999999999999999999998 7999999999999999999999 788899999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+++.++..++++++++|-+|+.|...
T Consensus 152 iL~d~~~a~~~~~v~LRYFN~aGA~~ 177 (329)
T COG1087 152 ILRDAAKANPFKVVILRYFNVAGACP 177 (329)
T ss_pred HHHHHHHhCCCcEEEEEecccccCCC
Confidence 99999999999999999999999753
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=220.16 Aligned_cols=185 Identities=30% Similarity=0.497 Sum_probs=161.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCC-CcccccccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
|++|||||.||||+..++.++++.. +|+++|...- +..+.+......+++.++++|+.|. .+. .+|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999999999865 4788886533 3445556666778999999999876 334 5999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCC--CCCCCCCCCCCCCCCCCHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEH--PQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~--~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
+|+-.+..++-.++...+++|+.||.+|++++++... ||+++||..|||.-... ...|+ +|.+|.++|++|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9999998888899999999999999999999999974 99999999999985543 56676 899999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
|++++.+++++.+.+|+++++.|++|-|||.+ ....+||.+|.+
T Consensus 156 KAasD~lVray~~TYglp~~ItrcSNNYGPyq--fpEKlIP~~I~n 199 (340)
T COG1088 156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQ--FPEKLIPLMIIN 199 (340)
T ss_pred hhhHHHHHHHHHHHcCCceEEecCCCCcCCCc--CchhhhHHHHHH
Confidence 99999999999999999999999999999999 678999998865
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=232.62 Aligned_cols=192 Identities=29% Similarity=0.395 Sum_probs=162.7
Q ss_pred hhccccCCCCCCCCCCCccC-------CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCc---ccccccccC
Q 021681 94 QFHRTSSFGAKTGRVPVGIG-------RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR---KDNLVHHFR 162 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~p~~~~-------~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~---~~~~~~~~~ 162 (309)
...++..++|+++|.|+..+ ..||+||||||+|.||+++++++++.+. ++++++++..+. ..++.+.+.
T Consensus 221 ~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~ 300 (588)
T COG1086 221 GQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP 300 (588)
T ss_pred cccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC
Confidence 33677888999999998765 4899999999999999999999999987 677777764432 222333344
Q ss_pred CCceEEEecccccc-----ccCC--CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccc
Q 021681 163 NPRFELIRHDVVEP-----ILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (309)
Q Consensus 163 ~~~v~~~~~Dl~~~-----~~~~--~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy 234 (309)
..++..+-+|+.|. ++.+ +|+|||+||..+.+-++.++.+.+++||.||.|++++|.++++ ++|++||+.+
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA- 379 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA- 379 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc-
Confidence 56777888888776 4555 9999999999999999999999999999999999999999998 8999999864
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCCCCCCCcHHHHHHHhC
Q 021681 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309 (309)
Q Consensus 235 ~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~~ 309 (309)
.+|.|.||.||+.+|.++.+++++. +.+++++|+|||.| +.|+++|.|.+||
T Consensus 380 ------------------V~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlG-----SrGSViPlFk~QI 434 (588)
T COG1086 380 ------------------VNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLG-----SRGSVIPLFKKQI 434 (588)
T ss_pred ------------------cCCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceec-----CCCCCHHHHHHHH
Confidence 3456899999999999999987743 39999999999999 6799999999985
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=217.70 Aligned_cols=178 Identities=22% Similarity=0.340 Sum_probs=140.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc-ccccc-CCCceEEEecccccc-----ccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHF-RNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~-~~~~~-~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.++|+||||||+||||++|+++|+++|++|++++|........ ..... ....++++.+|+.+. .+.++|+|||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 3578999999999999999999999999999998864422111 11111 123577888898765 4678999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc-ccccCCCC---CCCCCCCCCCCC-CCCCCCHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDPLE---HPQKETYWGNVN-PIGERSCYD 260 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~-~vy~~~~~---~~~~E~~~~~~~-~~~~~~~Y~ 260 (309)
+|+.. ..++...+++|+.|+.+++++|++.++ +||++||. .+|+.... .+++|+.|...+ +..+.+.|+
T Consensus 88 ~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 88 TASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred ecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHH
Confidence 99853 245778899999999999999999887 89999995 68875432 357888764432 345678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
.+|.++|.+++.++.+++++++++||++||||++..
T Consensus 163 ~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~ 198 (342)
T PLN02214 163 YGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQP 198 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 999999999999988889999999999999998643
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=218.35 Aligned_cols=189 Identities=24% Similarity=0.374 Sum_probs=146.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccc-cc-----ccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EP-----ILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-~~-----~~~~~D~Vih~A 188 (309)
+|+||||||+||||++|+++|+++ |++|++++|.... .........++++.+|+. +. .++++|+|||+|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 468999999999999999999987 6899999874321 111222346888889986 32 456899999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC-CCC-CCCCCHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNP-IGERSCYDEGKRTA 266 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~-~~~-~~~~~~Y~~sK~~~ 266 (309)
+...+.....++...+++|+.++.+++++|++.+.++|++||..+||.....+.+|+..+. ..+ ..|.+.|+.+|.++
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM 156 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence 8765555566778889999999999999999988899999999999876555666653211 011 24567899999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCCCC------CCCcHHHHHHHh
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCL------DDGRVVSNFVAQ 308 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~------~~~~~i~~~i~~ 308 (309)
|++++.++..++++++++||+++|||++.. ...++++.++.+
T Consensus 157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~ 204 (347)
T PRK11908 157 DRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 204 (347)
T ss_pred HHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHH
Confidence 999999988889999999999999998532 124567666643
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=220.13 Aligned_cols=182 Identities=27% Similarity=0.387 Sum_probs=136.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----ccCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
.+.|+||||||+||||++|+++|+++ |++|+++++............ .....++++.+|+.+. .+.++|+||
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 45579999999999999999999998 589999987543221111000 0123688899999775 456799999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC-----------CCC--
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-----------VNP-- 252 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~-----------~~~-- 252 (309)
|+|+......+..++...+..|+.++.+++++|++.+.+||++||..+||.......+|+.... ..+
T Consensus 92 HlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~ 171 (386)
T PLN02427 92 NLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCI 171 (386)
T ss_pred EcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccccc
Confidence 9998655444445566677899999999999998887799999999999875433333321100 000
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 253 ----IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 253 ----~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
..+.+.|+.+|.++|++++.+++.++++++++||++||||++.
T Consensus 172 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~ 218 (386)
T PLN02427 172 FGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 218 (386)
T ss_pred cCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCC
Confidence 1234679999999999999988888999999999999999863
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-27 Score=233.92 Aligned_cols=200 Identities=25% Similarity=0.430 Sum_probs=156.6
Q ss_pred CCCCCCccCCCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc------c
Q 021681 105 TGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------I 177 (309)
Q Consensus 105 ~~~~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~ 177 (309)
.++-|.-...++|+||||||+||||++|+++|+++ |++|++++|....... ......++++.+|+++. .
T Consensus 304 ~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~gDl~d~~~~l~~~ 379 (660)
T PRK08125 304 LNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FLGHPRFHFVEGDISIHSEWIEYH 379 (660)
T ss_pred ecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hcCCCceEEEeccccCcHHHHHHH
Confidence 44455555568899999999999999999999986 7999999986432211 11234688888999753 3
Q ss_pred cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC-CCCC-CC
Q 021681 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNPI-GE 255 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~-~~~~-~~ 255 (309)
+.++|+|||+||...+..+..++...+++|+.++.+++++|++.+.++||+||..+||.....+++|+.+.. ..+. .+
T Consensus 380 l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p 459 (660)
T PRK08125 380 IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQ 459 (660)
T ss_pred hcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCC
Confidence 568999999999766555556777889999999999999999988899999999999976666778874321 1122 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC------CCCcHHHHHHHh
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL------DDGRVVSNFVAQ 308 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~------~~~~~i~~~i~~ 308 (309)
.+.|+.||.++|++++.+++.++++++++||++||||++.. ...++++.++.+
T Consensus 460 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~ 518 (660)
T PRK08125 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 518 (660)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHH
Confidence 56899999999999999988889999999999999998632 124677777664
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=210.34 Aligned_cols=181 Identities=22% Similarity=0.305 Sum_probs=145.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc--cccccc-CCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHF-RNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~--~~~~~~-~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.+++|+||||+||||++|+++||++||.|++..|+....+. .+.+.- ...+..++.+|++++ ++.+||.|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 67899999999999999999999999999999998766332 232221 234578888888776 7789999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccC-----CCCCCCCCCCCCCCCCC-CCCCH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGD-----PLEHPQKETYWGNVNPI-GERSC 258 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~-----~~~~~~~E~~~~~~~~~-~~~~~ 258 (309)
.|.+....... ...+.++.++.||.|++++|++.. + |+|++||.++... ..+..++|+.|.+.+.. .....
T Consensus 85 ~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~ 163 (327)
T KOG1502|consen 85 TASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW 163 (327)
T ss_pred eCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHH
Confidence 99754433322 355899999999999999999998 4 8999999655432 34568899988654332 12268
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
|..+|..+|..+++++.+.+++.+++.|+.|+||....
T Consensus 164 Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~ 201 (327)
T KOG1502|consen 164 YALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQP 201 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccc
Confidence 99999999999999999999999999999999998654
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=213.66 Aligned_cols=162 Identities=22% Similarity=0.197 Sum_probs=132.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~ 189 (309)
|+||||||+||||++|+++|+++| +|+++++... .+.+|+++. .+. ++|+|||||+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence 589999999999999999999999 7888876421 123455554 344 5899999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.......+.++...+++|+.|+.+|+++|++.++++|++||..||+.....+++|+ ++..|.+.|+.+|.++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK~~~E~~ 138 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETKLAGEKA 138 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 87665566677888899999999999999999999999999999998777788888 6778889999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
++.++ .+.+++|+++||||++ ..+++.|+++
T Consensus 139 ~~~~~----~~~~ilR~~~vyGp~~----~~~~~~~~~~ 169 (299)
T PRK09987 139 LQEHC----AKHLIFRTSWVYAGKG----NNFAKTMLRL 169 (299)
T ss_pred HHHhC----CCEEEEecceecCCCC----CCHHHHHHHH
Confidence 88754 4679999999999974 3456666653
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=219.29 Aligned_cols=183 Identities=25% Similarity=0.269 Sum_probs=136.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc------cc----------cc--ccCCCceEEEeccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD------NL----------VH--HFRNPRFELIRHDV 173 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~------~~----------~~--~~~~~~v~~~~~Dl 173 (309)
...++|+||||||+||||++|+++|+++|++|+++++....... .. .. ......++++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 34678899999999999999999999999999999865332110 00 00 00123578899999
Q ss_pred ccc-----ccC--CCCEEEEcccCCCCCCCcCC---hhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCC
Q 021681 174 VEP-----ILL--EVDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 174 ~~~-----~~~--~~D~Vih~A~~~~~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~ 241 (309)
.+. .+. ++|+|||+|+.........+ +...+++|+.|+.+++++|++.++ +||++||..+||... .+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~ 201 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-ID 201 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CC
Confidence 876 233 58999999975433222222 345678999999999999999875 799999999998643 23
Q ss_pred CCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 242 QKETYWG---------NVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 242 ~~E~~~~---------~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.+|...+ ...+..|.+.|+.+|.++|.+++.++..+|++++++||++||||++.
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~ 264 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD 264 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCc
Confidence 3332110 01255677899999999999999999889999999999999999864
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=209.09 Aligned_cols=170 Identities=32% Similarity=0.445 Sum_probs=130.3
Q ss_pred EEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCCC
Q 021681 120 VVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPAS 192 (309)
Q Consensus 120 lITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~~ 192 (309)
|||||+||||++|+++|+++| ++|.++++........ ........+++.+|++++ +++++|+|||+|++..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~--~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK--DLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch--hhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 699999999999999999999 6899888754433211 111223334888999875 7889999999998644
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCC-CCCCC---CCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQ---KETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~-~~~~~---~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
... ....+..+++|+.||.||+++|++.++ |+||+||..|++.. ...++ +|+.+ .+..+.+.|+.||+.+|
T Consensus 79 ~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~AE 154 (280)
T PF01073_consen 79 PWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALAE 154 (280)
T ss_pred ccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHHH
Confidence 333 456778999999999999999999998 89999999988762 22222 34422 23346678999999999
Q ss_pred HHHHHHHH---h--cCCcEEEEEeCceeCCCCC
Q 021681 268 TLTMDYHR---G--AGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 268 ~~v~~~a~---~--~gi~~~ivRp~~V~Gp~~~ 295 (309)
++++++.. + ..+.+++|||..||||++.
T Consensus 155 ~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~ 187 (280)
T PF01073_consen 155 KAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ 187 (280)
T ss_pred HHHHhhcccccccccceeEEEEeccEEeCcccc
Confidence 99999764 2 2499999999999999863
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=213.16 Aligned_cols=189 Identities=23% Similarity=0.329 Sum_probs=145.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
.++|+||||||+||||++++++|+++|++|++++|.................+..+.+|+.+. .++ ++|+|||
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 467899999999999999999999999999999876543221111110123566788888775 233 4799999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCC-CCCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
+||.........++...+++|+.|+.+++++|++.+ + ++|++||..+|+... ..+.+|+ .+..|.+.|+.+|
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~sK 156 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSSK 156 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhHH
Confidence 998644434445778899999999999999998876 4 899999999998643 2345665 4566778999999
Q ss_pred HHHHHHHHHHHHhc-------CCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 264 RTAETLTMDYHRGA-------GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 264 ~~~E~~v~~~a~~~-------gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
.+.|.+++.++..+ +++++++||++||||++. ..+++++.|+++
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~-~~~~~~~~~~~~ 207 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDW-AEDRLIPDVIRA 207 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcc-hhhhhhHHHHHH
Confidence 99999999887654 899999999999999753 235778887764
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-27 Score=210.07 Aligned_cols=167 Identities=28% Similarity=0.402 Sum_probs=125.1
Q ss_pred EEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc---cccccccCCCce----EEEecccccc-----ccC--CCCE
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK---DNLVHHFRNPRF----ELIRHDVVEP-----ILL--EVDQ 183 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~---~~~~~~~~~~~v----~~~~~Dl~~~-----~~~--~~D~ 183 (309)
||||||+|.||++|+++|++.+. .+++++++....- ..+........+ ..+-+|+.|. .+. ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 79999999999999999999986 7899987644322 112211233333 3457788776 455 7999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
|||.|+..+.+..+.++.+++++|+.||.|++++|.++++ ++|++||+.+. +|.+.||.|
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv-------------------~PtnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV-------------------NPTNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS-------------------S--SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC-------------------CCCcHHHHH
Confidence 9999999999999999999999999999999999999998 89999998754 356899999
Q ss_pred HHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCCCCCCCcHHHHHHHhC
Q 021681 263 KRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309 (309)
Q Consensus 263 K~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~~ 309 (309)
|+.+|.++..++... +.+++++|+|||+| +.|+++|.|.+|+
T Consensus 142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlg-----S~GSVip~F~~Qi 186 (293)
T PF02719_consen 142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLG-----SRGSVIPLFKKQI 186 (293)
T ss_dssp HHHHHHHHHHHCCTSSSS--EEEEEEE-EETT-----GTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEEecceec-----CCCcHHHHHHHHH
Confidence 999999999987665 68999999999999 6799999999885
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=208.47 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=136.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc--cccccCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~--~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.++|+||||||+||||++|+++|+++|++|+++.++....... .........++++.+|+.++ .++++|+|||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999999998887764322110 01111113577888998775 3568999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCC----CCCCCCCCCCCCC----CCCCCC
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDP----LEHPQKETYWGNV----NPIGER 256 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~----~~~~~~E~~~~~~----~~~~~~ 256 (309)
+|+... ..........+++|+.|+.++++++.+.+ + ++|++||..+|+.. ...+.+|+.|... .+..|.
T Consensus 87 ~A~~~~-~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 87 VATPVN-FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred eCCCCc-cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 998532 11122234567999999999999998864 4 89999999999853 2345667655321 223466
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+.|+.||.++|.+++.+++.++++++++||++||||++.
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~ 204 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLT 204 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCcc
Confidence 789999999999999999888999999999999999864
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=211.15 Aligned_cols=182 Identities=22% Similarity=0.241 Sum_probs=135.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
.++|+||||||+||||++++++|+++|++|+++++.................+.++.+|+.+. .+.++|+|||+|
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 356799999999999999999999999999998875432221111111234678889998775 456799999999
Q ss_pred cCCCCCC--CcCCh-----hHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCC-----CCCCCCCCCCCC---
Q 021681 189 CPASPVH--YKYNP-----VKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLE-----HPQKETYWGNVN--- 251 (309)
Q Consensus 189 ~~~~~~~--~~~~~-----~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~-----~~~~E~~~~~~~--- 251 (309)
+...... ...++ ..++++|+.|+.+++++|.+.+ + +||++||.++|+.... .+++|+.+...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~ 167 (353)
T PLN02896 88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVW 167 (353)
T ss_pred ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhh
Confidence 8654322 12233 2456677899999999998875 4 8999999999985321 346676332211
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 252 -PIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 252 -~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+..+.+.|+.||.++|++++.+++.++++++++||++||||++.
T Consensus 168 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~ 212 (353)
T PLN02896 168 NTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLT 212 (353)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcC
Confidence 12244689999999999999999889999999999999999864
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=209.40 Aligned_cols=185 Identities=29% Similarity=0.458 Sum_probs=139.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEE-EecCCCCcc-cccccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~-i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
+|+||||||+||||++|+++|+++|++|++ +++...... ...........+.++.+|+.+. .+. ++|+|||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999987554 444321110 1111111223577788898875 333 4899999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc---------CC-cEEEEeccccccCCC--CCCCCCCCCCCCCCCC
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---------GA-KFLLTSTSEVYGDPL--EHPQKETYWGNVNPIG 254 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~-r~v~iSS~~vy~~~~--~~~~~E~~~~~~~~~~ 254 (309)
|||........+++...+++|+.|+.+++++|.+. ++ ++|++||.++|+... ..+++|+ .+..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~~ 155 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPYA 155 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCCC
Confidence 99865443334567889999999999999999863 33 899999999998542 3456776 5666
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
|.+.|+.||.++|.+++.++++.+++++++||++||||++. ...+++.++.
T Consensus 156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~--~~~~~~~~~~ 206 (355)
T PRK10217 156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHF--PEKLIPLMIL 206 (355)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC--cccHHHHHHH
Confidence 77899999999999999998889999999999999999863 3456666654
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=209.12 Aligned_cols=173 Identities=30% Similarity=0.387 Sum_probs=138.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc------CCCceEEEecccccc-----ccC--CCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF------RNPRFELIRHDVVEP-----ILL--EVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~------~~~~v~~~~~Dl~~~-----~~~--~~D 182 (309)
|+||||||+||||++|+++|+++|++|++++|...... +...... ....+.++.+|+++. .+. ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999998653211 1111110 123578889999876 233 479
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC----cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
+|||+|+.........++...+++|+.||.+++++|.+.+. ++|++||..+||.....+.+|+ .+..|.+.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 155 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRSP 155 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCCh
Confidence 99999987544333445667788999999999999998763 7999999999997666667777 56778899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|+.||.++|.+++.++++++++++..|+.++|||+.
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~ 191 (343)
T TIGR01472 156 YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRR 191 (343)
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCC
Confidence 999999999999999888899999999999999975
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=204.21 Aligned_cols=182 Identities=21% Similarity=0.272 Sum_probs=137.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc--ccc-cCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHH-FRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~--~~~-~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.+|+||||||+||||++|+++|+++|++|++++++........ ... -...+++++.+|+++. .++++|+|||
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 4689999999999999999999999999998877644321110 000 0124678888999876 4567999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccccCC-----CCCCCCCCCCCCCCC-CCCCCH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDP-----LEHPQKETYWGNVNP-IGERSC 258 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy~~~-----~~~~~~E~~~~~~~~-~~~~~~ 258 (309)
|||.........++...+++|+.|+.+++++|.+. +. +||++||..+|+.. ...+++|+.+..... ..+.+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 163 (325)
T PLN02989 84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW 163 (325)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence 99864332233456788999999999999999885 34 89999998877543 234567774432111 123468
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
|+.+|.++|.+++.++++++++++++||++||||++..
T Consensus 164 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~ 201 (325)
T PLN02989 164 YVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQP 201 (325)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCC
Confidence 99999999999999988889999999999999998754
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=197.42 Aligned_cols=181 Identities=34% Similarity=0.541 Sum_probs=147.2
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEcccCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLACPA 191 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~~~ 191 (309)
||||||+||||++|+++|+++|+.|+.+.+........... ..+.++..|+.+. .+. ++|.|||+|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence 79999999999999999999999999887754433211111 1678888888765 233 469999999854
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
.......+....++.|+.++.+++++|.+.++ ++|++||..+|+.....+++|+ .+..+.+.|+.+|...|+++
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccc
Confidence 31122256788899999999999999999998 9999999999999877788888 55677889999999999999
Q ss_pred HHHHHhcCCcEEEEEeCceeCCC-CCCCCCcHHHHHHHh
Q 021681 271 MDYHRGAGVEVRIARIFNTYGPR-MCLDDGRVVSNFVAQ 308 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp~-~~~~~~~~i~~~i~~ 308 (309)
+.+..+++++++++||++||||+ .......+++.++.+
T Consensus 152 ~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~ 190 (236)
T PF01370_consen 152 RDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQ 190 (236)
T ss_dssp HHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHH
Confidence 99998889999999999999998 222457888888765
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=209.26 Aligned_cols=185 Identities=26% Similarity=0.382 Sum_probs=139.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
++|+||||||+||||++|++.|+++|++|++++|........ .....+++.+|+.+. .+.++|+|||+|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 568999999999999999999999999999999753211110 011245677788764 3568999999998
Q ss_pred CCCCCCC-cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCC----CCCCCCCCCCCCCCCCCHHHHHH
Q 021681 190 PASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH----PQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 190 ~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~----~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
....... ..++...+..|+.++.+|+++|++.++ +||++||..+|+..... +..|+. ..+..|.+.|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~---~~p~~p~s~Yg~sK 171 (370)
T PLN02695 95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESD---AWPAEPQDAYGLEK 171 (370)
T ss_pred ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCccc---CCCCCCCCHHHHHH
Confidence 5433222 234455678999999999999999887 89999999999865321 244431 02566778999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHH
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVA 307 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~ 307 (309)
.++|++++.++..++++++++||+++|||+..+.. ..+++.|++
T Consensus 172 ~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~ 217 (370)
T PLN02695 172 LATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCR 217 (370)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHH
Confidence 99999999998888999999999999999865433 234555554
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=221.87 Aligned_cols=189 Identities=29% Similarity=0.446 Sum_probs=145.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCC-cccccccccCCCceEEEeccccccc-----c--CCCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVD 182 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~~-----~--~~~D 182 (309)
++++|+||||||+||||++|+++|+++ +++|+++++.... ....+........++++.+|+.+.. + .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 467789999999999999999999998 5789988864211 1111111112346888899998752 2 5799
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCC---CCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHP---QKETYWGNVNPIGERS 257 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~---~~E~~~~~~~~~~~~~ 257 (309)
+|||+|+.........++...+++|+.||.+++++|++.+ + +||++||..+||.....+ ..|+ .+..|.+
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~ 157 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTN 157 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCC
Confidence 9999998654443344567788999999999999999987 4 899999999998764432 2344 4556778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
.|+.+|.++|.+++.++..++++++++||++||||++. ...+++.|+.+
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~--~~~~i~~~~~~ 206 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQF--PEKLIPKFILL 206 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCC--cccHHHHHHHH
Confidence 99999999999999998888999999999999999863 34677776653
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=205.37 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=134.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC----CCceEEEecccccc-----ccCCCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
..|+||||||+||||++|+++|+++|++|++++|....... ...... ...+.++.+|+.+. .+.++|+||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKK-VKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHH-HHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 45799999999999999999999999999998876432211 111100 12577888888765 456799999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCC-CCC-CCCCCCCCCC----CCCCCC
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPL-EHP-QKETYWGNVN----PIGERS 257 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~-~~~-~~E~~~~~~~----~~~~~~ 257 (309)
|+|+.... .........+++|+.|+.+++++|.+.+ + +||++||..+|+... ..+ ++|+.|...+ +..+.+
T Consensus 83 H~A~~~~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 83 HVATPMDF-ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EeCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 99985321 1122334788999999999999999876 4 899999987776432 223 4676553211 123446
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.||.++|.+++.+++++|++++++||++||||++.
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 199 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFIS 199 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCC
Confidence 89999999999999999889999999999999999864
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=201.11 Aligned_cols=180 Identities=23% Similarity=0.351 Sum_probs=135.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc--ccccc-cCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHH-FRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~--~~~~~-~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.+|+||||||+||||++++++|+++|++|+++.|+...... ..... -....++++.+|++++ .++++|+|||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 46899999999999999999999999999988876443211 11100 0124678888999776 4567999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccc--cCC---CCCCCCCCCCCCCC-CCCCCCH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVY--GDP---LEHPQKETYWGNVN-PIGERSC 258 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy--~~~---~~~~~~E~~~~~~~-~~~~~~~ 258 (309)
+|+.... ...+.....+++|+.|+.+++++|++. ++ |||++||.++| +.. .+.+++|+.|.... +..+.+.
T Consensus 84 ~A~~~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 162 (322)
T PLN02986 84 TASPVFF-TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW 162 (322)
T ss_pred eCCCcCC-CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence 9986322 122233457899999999999999886 55 89999998764 332 23457777664221 1124578
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
|+.+|.++|.+++.+.++++++++++||++||||++.
T Consensus 163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~ 199 (322)
T PLN02986 163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQ 199 (322)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCC
Confidence 9999999999999998888999999999999999864
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=199.90 Aligned_cols=180 Identities=36% Similarity=0.520 Sum_probs=137.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCC-CEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEV-DQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~-D~Vih~A~~ 190 (309)
|+||||||+||||++|+++|++.|++|+++++......... ..++.+.+|+++. ....+ |.|||+|+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 35999999999999999999999999999998655443322 2445555555553 44556 999999986
Q ss_pred CCCCCCcC-ChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 191 ASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 191 ~~~~~~~~-~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
........ ++...+++|+.|+.+++++|++.++ ++|+.||..+|+.. ...+.+|+. .+..|.+.|+.+|..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~E 150 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAAE 150 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHHH
Confidence 55444333 3566899999999999999999776 89998887877765 333667763 35555568999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCCCCCC-CcHHHHHH
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCLDD-GRVVSNFV 306 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~-~~~i~~~i 306 (309)
++++.+...++++++++||++||||+..... +.++..++
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~ 190 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFI 190 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHH
Confidence 9999998878999999999999999875432 23554433
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=201.74 Aligned_cols=175 Identities=29% Similarity=0.336 Sum_probs=139.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-ccccccc-----cCCCceEEEecccccc-----ccC--C
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHH-----FRNPRFELIRHDVVEP-----ILL--E 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~-----~~~~~v~~~~~Dl~~~-----~~~--~ 180 (309)
.++|+||||||+||||++|+++|+++|++|+++++..... ...+... .....+.++.+|+.+. .+. +
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 4568999999999999999999999999999998754321 1111111 0123578888999875 233 4
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC------cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA------KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~------r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
+|+|||||+.........++...+++|+.|+.+++++|++.+. ++|++||..+||.... +++|+ .+..
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~ 157 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH 157 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence 7999999987544434456677889999999999999988764 7999999999997654 67777 5677
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|.+.|+.||.++|.+++.++.+++++++..|+.++|||+.
T Consensus 158 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~ 197 (340)
T PLN02653 158 PRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRR 197 (340)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCC
Confidence 8899999999999999999988899999999999999975
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=199.86 Aligned_cols=179 Identities=22% Similarity=0.325 Sum_probs=132.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc--ccccc-cCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHH-FRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~--~~~~~-~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
++|+||||||+||||++|+++|+++|++|++++|+...... .+... ....+++++.+|+.++ +++++|+|||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 46799999999999999999999999999998876432111 11000 0124678888998775 4678999999
Q ss_pred cccCCCCCCCcCCh-hHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccc--cccCC---CCCCCCCCCCCCCC-CCCCCC
Q 021681 187 LACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSE--VYGDP---LEHPQKETYWGNVN-PIGERS 257 (309)
Q Consensus 187 ~A~~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~--vy~~~---~~~~~~E~~~~~~~-~~~~~~ 257 (309)
+|+.... ...++ ...+++|+.|+.+++++|.+. ++ +||++||.+ +|+.. ...+++|+.+.... .....+
T Consensus 83 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~ 160 (322)
T PLN02662 83 TASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL 160 (322)
T ss_pred eCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence 9986421 22233 478899999999999999887 66 899999976 36532 22356676322111 011235
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.+|..+|++++.++++++++++++||+++|||++.
T Consensus 161 ~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~ 198 (322)
T PLN02662 161 WYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQ 198 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCC
Confidence 89999999999999998888999999999999999864
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=202.85 Aligned_cols=184 Identities=28% Similarity=0.460 Sum_probs=137.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCC-CcccccccccCCCceEEEecccccc-----ccC--CCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~ 187 (309)
|+||||||+||||++|+++|+++|++ |+++++... ..............+.++.+|+++. .+. ++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 58999999999999999999999975 555554321 1111111111124567788899875 233 48999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc---------CC-cEEEEeccccccCCCC----------CCCCCCCC
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---------GA-KFLLTSTSEVYGDPLE----------HPQKETYW 247 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~-r~v~iSS~~vy~~~~~----------~~~~E~~~ 247 (309)
||.........++...+++|+.|+.+++++|.+. ++ ++|++||..+|+.... .++.|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~-- 158 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET-- 158 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence 9865433334456788999999999999999874 33 8999999999986321 124455
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+..|.+.|+.+|.++|.+++.+++.++++++++|+++||||+.. ..++++.++.
T Consensus 159 ---~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~--~~~~~~~~~~ 213 (352)
T PRK10084 159 ---TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVIL 213 (352)
T ss_pred ---CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcC--ccchHHHHHH
Confidence 566778899999999999999998889999999999999999852 3456666654
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=199.54 Aligned_cols=167 Identities=23% Similarity=0.352 Sum_probs=124.5
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEe---c-ccccccc-----CCCCEEEEccc
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---H-DVVEPIL-----LEVDQIYHLAC 189 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~---~-Dl~~~~~-----~~~D~Vih~A~ 189 (309)
||||||+||||++|+++|+++|++++++.+....... .... ..+++.+ . ++....+ .++|+|||+||
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL---VDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-HHhh---hhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 7999999999999999999999976666543221110 0000 0111111 0 1112222 36999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
..... ..+....++.|+.++.+|+++|++.++++|++||..+|+.....+.+|+ .+..|.+.|+.+|.++|++
T Consensus 78 ~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 150 (308)
T PRK11150 78 CSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSKFLFDEY 150 (308)
T ss_pred ecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHHHHHHHH
Confidence 54332 2344567899999999999999999889999999999997655566676 4566778999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
++.++...+++++++||++||||+...
T Consensus 151 ~~~~~~~~~~~~~~lR~~~vyG~~~~~ 177 (308)
T PRK11150 151 VRQILPEANSQICGFRYFNVYGPREGH 177 (308)
T ss_pred HHHHHHHcCCCEEEEeeeeecCCCCCC
Confidence 999988889999999999999998643
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=191.44 Aligned_cols=184 Identities=27% Similarity=0.459 Sum_probs=156.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCC-cccccccccCCCceEEEecccccccc-------CCCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~~~-------~~~D~Vih 186 (309)
++++||||.||||+..+..+...- +..+.++...-. ....+......+++.++..|+.++.. .++|.|+|
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 799999999999999999999873 366666643222 23333444456889999999987722 46999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCC-CCCCCCCCCCCCCCHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQK-ETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~-E~~~~~~~~~~~~~~Y~~sK 263 (309)
.|+..+......++......|+.+|..|++.++..|. +||++||..|||++.+...+ |. +.++|.++|+++|
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAasK 161 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAASK 161 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHHH
Confidence 9998877777778888899999999999999999974 79999999999999887766 66 7889999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+++|+++++|.+.++++++++|.++||||++ ..-.++|.||+
T Consensus 162 aAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q--~~~klipkFi~ 203 (331)
T KOG0747|consen 162 AAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQ--YPEKLIPKFIK 203 (331)
T ss_pred HHHHHHHHHHhhccCCcEEEEeccCccCCCc--ChHHHhHHHHH
Confidence 9999999999999999999999999999999 56889999987
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=196.26 Aligned_cols=184 Identities=33% Similarity=0.536 Sum_probs=141.2
Q ss_pred eEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCC-cccccccccCCCceEEEecccccc-----ccCC--CCEEEEc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYHL 187 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih~ 187 (309)
+||||||||+||++++++|++.| ++|+++++.... ..+..........++++.+|+.++ ++.+ +|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 58999999999999999999987 689888764221 111111111224577888898775 3444 8999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC--CcEEEEeccccccCCCCC-CCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEH-PQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~r~v~iSS~~vy~~~~~~-~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
|+.........++...+++|+.++.+++++|.+.+ .++|++||..+|+..... +..|. .+..+.+.|+.+|.
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 155 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKA 155 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCchHHHHH
Confidence 98654333445677889999999999999998863 489999999999865433 56666 45667789999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
.+|.+++.++.+.+++++++||+.+|||+.. .+.+++.++.+
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~--~~~~~~~~~~~ 197 (317)
T TIGR01181 156 ASDHLVRAYHRTYGLPALITRCSNNYGPYQF--PEKLIPLMITN 197 (317)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCC--cccHHHHHHHH
Confidence 9999999998888999999999999999763 34667666553
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=197.53 Aligned_cols=169 Identities=24% Similarity=0.354 Sum_probs=131.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
++|+||||||+||||++++++|+++| ++|++++|...... .+........+.++.+|+.+. .+.++|+|||+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~-~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW-EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH-HHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 57899999999999999999999986 68988887543211 111112224678889999876 45679999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
||.........++...+++|+.|+.+++++|.+.++ +||++||... ..|.+.|+.+|+++
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~-------------------~~p~~~Y~~sK~~~ 142 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA-------------------ANPINLYGATKLAS 142 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCCCCHHHHHHHHH
Confidence 987544334556778999999999999999999886 8999999642 23347899999999
Q ss_pred HHHHHHHHH---hcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 267 ETLTMDYHR---GAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 267 E~~v~~~a~---~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
|.+++.++. ..|++++++|||+||||+. .+++.|+++
T Consensus 143 E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-----~~i~~~~~~ 182 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSRG-----SVVPFFKSL 182 (324)
T ss_pred HHHHHHHHhhccccCcEEEEEeecceeCCCC-----CcHHHHHHH
Confidence 999987543 4689999999999999863 466666643
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=198.09 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=136.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-------CCCceEEEecccccc-----ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-------RNPRFELIRHDVVEP-----ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-------~~~~v~~~~~Dl~~~-----~~~ 179 (309)
...++|+||||||+||||++++++|+++|++|+++.++..... .+.... ....+.++.+|+++. .+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~-~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKE-KLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 3457889999999999999999999999999998776532211 111100 012467888899876 466
Q ss_pred CCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecc--ccccCC--CC--CCCCCCCCCCC-
Q 021681 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTS--EVYGDP--LE--HPQKETYWGNV- 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~--~vy~~~--~~--~~~~E~~~~~~- 250 (309)
++|.|||+|+...............++|+.++.+++++|++. ++ |+|++||. .+|+.. .. ..++|+.|...
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 799999999875443322222345678999999999999986 56 89999996 577642 22 34677755432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.+..+.+.|+.+|.++|.+++.++..+|++++++||++||||++.
T Consensus 208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~ 252 (367)
T PLN02686 208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFF 252 (367)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCC
Confidence 234566789999999999999998888999999999999999853
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=195.78 Aligned_cols=176 Identities=27% Similarity=0.420 Sum_probs=139.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc---cccccc--CCCceEEEeccccccc-----cC--CC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD---NLVHHF--RNPRFELIRHDVVEPI-----LL--EV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~---~~~~~~--~~~~v~~~~~Dl~~~~-----~~--~~ 181 (309)
+++|+|+||||+||||++|+++|+++|++|+++++....... ...... ....+.++.+|+.++. +. ++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999865322211 111110 1235678888987762 22 68
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHH
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (309)
|+|||+|+.........++...+++|+.++.+++++|++.++ ++|++||..+|+.....+++|+ .+..+.+.|+
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y~ 157 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPYG 157 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHHH
Confidence 999999986433333456788899999999999999998886 8999999999987666778887 5777788999
Q ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEEeCceeCCCC
Q 021681 261 EGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~-~gi~~~ivRp~~V~Gp~~ 294 (309)
.+|.++|++++.++.. .+++++++|++++|||+.
T Consensus 158 ~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~ 192 (352)
T PLN02240 158 RTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHP 192 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCc
Confidence 9999999999988654 579999999999999853
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=190.11 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=127.1
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCC--CCEEEEcccCCCCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE--VDQIYHLACPASPVH 195 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~--~D~Vih~A~~~~~~~ 195 (309)
+||||||+||||++++++|+++|++|++++|. ..++.+.+.....+.+ +|+|||+|+......
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 65 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDG 65 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------ccCCCCHHHHHHHHHhCCCCEEEECCccccccc
Confidence 48999999999999999999999999998863 1122222223333443 699999998654333
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 021681 196 YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHR 275 (309)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~ 275 (309)
...++...+++|+.++.+++++|++.+.++|++||..+|+.....+++|+ .+..+.+.|+.+|..+|.+++.+
T Consensus 66 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~-----~~~~~~~~Y~~~K~~~E~~~~~~-- 138 (287)
T TIGR01214 66 AESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYRED-----DATNPLNVYGQSKLAGEQAIRAA-- 138 (287)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCC-----CCCCCcchhhHHHHHHHHHHHHh--
Confidence 33456778999999999999999988889999999999987666778887 45567789999999999998764
Q ss_pred hcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 276 GAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 276 ~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+.+++++||++||||+.. ..++..+++
T Consensus 139 --~~~~~ilR~~~v~G~~~~---~~~~~~~~~ 165 (287)
T TIGR01214 139 --GPNALIVRTSWLYGGGGG---RNFVRTMLR 165 (287)
T ss_pred --CCCeEEEEeeecccCCCC---CCHHHHHHH
Confidence 679999999999999742 334444443
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=187.88 Aligned_cols=171 Identities=29% Similarity=0.477 Sum_probs=149.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc----ccCCCceEEEecccccccc-------CCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRFELIRHDVVEPIL-------LEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~----~~~~~~v~~~~~Dl~~~~~-------~~~D~V 184 (309)
+++||||||+||||++.+.+|+++|+.|+++|+..+...+.+.. ..+...+.+.+.|+.|..+ .++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 46899999999999999999999999999999887665433321 1124688999999988732 349999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC-CCCHHHHH
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG-ERSCYDEG 262 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~-~~~~Y~~s 262 (309)
+|+|+........+++......|+.||.+|++.+++.++ .+|+.||+.+||.+..-|+.|+ .+.. |.++|+.+
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~-----~~t~~p~~pyg~t 156 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE-----DPTDQPTNPYGKT 156 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc-----CCCCCCCCcchhh
Confidence 999998877777778888899999999999999999998 7999999999999999999998 4555 88999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
|..+|.++..+....++.++.+|.++++|
T Consensus 157 K~~iE~i~~d~~~~~~~~~~~LRyfn~~g 185 (343)
T KOG1371|consen 157 KKAIEEIIHDYNKAYGWKVTGLRYFNVIG 185 (343)
T ss_pred hHHHHHHHHhhhccccceEEEEEeccccC
Confidence 99999999999888889999999999999
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=189.67 Aligned_cols=179 Identities=18% Similarity=0.177 Sum_probs=132.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc--ccccccc-CCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHF-RNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~-~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.+|+||||||+||||++++++|+++|++|++++|+..... ..+.... ...++.++.+|+++. .+.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4578999999999999999999999999999987532111 1111110 123577888898775 5678999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccccC--C---CCCCCCCCCCCCCCC-CCCCCH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGD--P---LEHPQKETYWGNVNP-IGERSC 258 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy~~--~---~~~~~~E~~~~~~~~-~~~~~~ 258 (309)
.++.... ...++...+++|+.|+.+++++|.+. ++ |+|++||..++.. . ...+++|+.|..... ..+...
T Consensus 85 ~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 162 (297)
T PLN02583 85 CFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW 162 (297)
T ss_pred eCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccH
Confidence 8753221 12346788999999999999999886 44 8999999866431 1 233677776632211 112247
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
|+.||..+|++++.+++..+++++++||++||||+..
T Consensus 163 Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~ 199 (297)
T PLN02583 163 HALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLT 199 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCC
Confidence 9999999999999998888999999999999999753
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=192.10 Aligned_cols=177 Identities=27% Similarity=0.375 Sum_probs=137.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccc-cccCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLV-HHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~-~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
++.+++||||+||+|++|+++|++++ .+|+++|........... ..+....+..+.+|+.+. ++.++ .|+|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 45689999999999999999999998 689988875542111111 111367888899999776 56678 8888
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCC-CCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH-PQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~-~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
||+...+.....+.+..+++||.||.+++++|++.++ ++||+||..|+...... -.+|+ ++ .|....+.|+.||+
T Consensus 82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~-~p--~p~~~~d~Y~~sKa 158 (361)
T KOG1430|consen 82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDES-LP--YPLKHIDPYGESKA 158 (361)
T ss_pred eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCC-CC--CccccccccchHHH
Confidence 8875444445556889999999999999999999998 89999999988765542 23343 21 23444578999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.+|.++.+.+...++..+++||..||||++.
T Consensus 159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~ 189 (361)
T KOG1430|consen 159 LAEKLVLEANGSDDLYTCALRPPGIYGPGDK 189 (361)
T ss_pred HHHHHHHHhcCCCCeeEEEEccccccCCCCc
Confidence 9999999987666799999999999999864
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=191.89 Aligned_cols=172 Identities=26% Similarity=0.494 Sum_probs=134.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc--cccCCCceEEEecccccc-----ccC--CCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~--~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~ 187 (309)
|+|+||||+||||++|+++|+++|++|+++++.......... .......+.++.+|+.+. .+. ++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 589999999999999999999999999998765333221111 111223466778888765 232 58999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI-GERSCYDEGKRT 265 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~-~~~~~Y~~sK~~ 265 (309)
|+..........+...+++|+.++.+++++|++.++ ++|++||..+|+.....+++|+ .+. .|.+.|+.+|.+
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~-----~~~~~p~~~Y~~sK~~ 155 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVES-----FPTGTPQSPYGKSKLM 155 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccc-----cCCCCCCChhHHHHHH
Confidence 986543333345667899999999999999999887 8999999999987666677787 343 567899999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 266 AETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 266 ~E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
+|++++.+++.. +++++++|++++|||.
T Consensus 156 ~E~~~~~~~~~~~~~~~~ilR~~~v~g~~ 184 (338)
T PRK10675 156 VEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence 999999987654 8999999999999984
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=191.84 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=128.2
Q ss_pred EEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEcccCCC
Q 021681 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLACPAS 192 (309)
Q Consensus 120 lITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~~~~ 192 (309)
|||||+||||++|+++|++.|++|+++.+.. .+|+.+. .+. ++|+|||||+...
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~-------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~ 61 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK-------------------ELDLTRQADVEAFFAKEKPTYVILAAAKVG 61 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccc-------------------cCCCCCHHHHHHHHhccCCCEEEEeeeeec
Confidence 6999999999999999999999887664311 2344333 333 5899999998643
Q ss_pred CC-CCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHH
Q 021681 193 PV-HYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS-CYDEGKRTAETL 269 (309)
Q Consensus 193 ~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~E~~ 269 (309)
.. ....++...+++|+.++.+|+++|++.++ ++|++||..||+.....+++|+.+.. .+..|.+ .|+.+|.++|++
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~e~~ 140 (306)
T PLN02725 62 GIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAKIAGIKM 140 (306)
T ss_pred ccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHHHHHHHH
Confidence 22 22345667889999999999999999987 89999999999977777888875432 1334444 599999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHH
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFV 306 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i 306 (309)
++.+.+..+++++++||++||||+.... .+.+++.++
T Consensus 141 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i 179 (306)
T PLN02725 141 CQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALI 179 (306)
T ss_pred HHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHH
Confidence 9999888899999999999999986432 234455444
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=185.57 Aligned_cols=162 Identities=23% Similarity=0.286 Sum_probs=137.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC--CCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~--~~D~Vih~A~~~~~~ 194 (309)
|+|||||++|.+|.+|++.|. .+++|+.+++. .+|+.+.|-..+.+. .+|+|||+|++....
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~---------------~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA---------------ELDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc---------------cccccChHHHHHHHHhhCCCEEEECccccccc
Confidence 459999999999999999998 66799988752 245555554444444 589999999999888
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a 274 (309)
..+.+++..+.+|..|+.+++++|.+.|.++||+||..||.+....++.|+ ++.+|.+.||.||++.|..++.+.
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sKl~GE~~v~~~~ 139 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSKLAGEEAVRAAG 139 (281)
T ss_pred cccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999888899999 788889999999999999998753
Q ss_pred HhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 275 RGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 275 ~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
-+..++|.++|||.. ++.++-.|++
T Consensus 140 ----~~~~I~Rtswv~g~~----g~nFv~tml~ 164 (281)
T COG1091 140 ----PRHLILRTSWVYGEY----GNNFVKTMLR 164 (281)
T ss_pred ----CCEEEEEeeeeecCC----CCCHHHHHHH
Confidence 567999999999973 2445545443
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=201.87 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=134.8
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccc--cc-cc-----c--------------CC
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDN--LV-HH-----F--------------RN 163 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~--~~-~~-----~--------------~~ 163 (309)
++...+++|+|||||||||||++|+++|++.+. +|+++.|........ +. +. + ..
T Consensus 4 ~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~ 83 (491)
T PLN02996 4 SCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLIS 83 (491)
T ss_pred cHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhh
Confidence 345678999999999999999999999998754 678888864422111 10 00 0 11
Q ss_pred CceEEEecccccc------------ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEe
Q 021681 164 PRFELIRHDVVEP------------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTS 229 (309)
Q Consensus 164 ~~v~~~~~Dl~~~------------~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iS 229 (309)
.++.++.+|+.++ ++.++|+|||+||... +..++...+++|+.||.+|+++|++. +. ++|++|
T Consensus 84 ~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vS 160 (491)
T PLN02996 84 EKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN---FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVS 160 (491)
T ss_pred cCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC---CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 5788999999732 3457999999997543 44678889999999999999999986 44 799999
Q ss_pred ccccccCCCCCCCCCCCCCCCC-----------------------------------------------CCCCCCHHHHH
Q 021681 230 TSEVYGDPLEHPQKETYWGNVN-----------------------------------------------PIGERSCYDEG 262 (309)
Q Consensus 230 S~~vy~~~~~~~~~E~~~~~~~-----------------------------------------------~~~~~~~Y~~s 262 (309)
|..|||.... .+.|..++... .....+.|+.|
T Consensus 161 T~~vyG~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~T 239 (491)
T PLN02996 161 TAYVCGEKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFT 239 (491)
T ss_pred eeEEecCCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhh
Confidence 9999986432 23333222100 12234789999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
|+++|+++..++ .+++++++||++||||++.+
T Consensus 240 K~~aE~lv~~~~--~~lpv~i~RP~~V~G~~~~p 271 (491)
T PLN02996 240 KAMGEMLLGNFK--ENLPLVIIRPTMITSTYKEP 271 (491)
T ss_pred HHHHHHHHHHhc--CCCCEEEECCCEeccCCcCC
Confidence 999999998875 38999999999999998754
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=192.28 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=119.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc--CCCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~--~~~D~Vih~A~~~~~~ 194 (309)
|+||||||+|+||++|.+.|.++|++|+.+.+. .+++.+.+.....+ ..+|+||||||...+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 699999999999999999999999999998653 11111112222222 2599999999987666
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a 274 (309)
.++.++...+++|+.++.+|+++|.+.+.++||+||..||++....++.|+ ++..|.+.||.+|+.+|+.++...
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~YG~~K~~~E~~v~~~~ 140 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVYGRSKLEGEQAVRAAC 140 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHHHHHHHHHHHHHHHH-
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHHHHHHHHHHHHHHHhc
Confidence 777889999999999999999999999999999999999998878888888 677888999999999999998743
Q ss_pred HhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 275 RGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 275 ~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
-+..|+|++.+||+. ...++..+++
T Consensus 141 ----~~~~IlR~~~~~g~~----~~~~~~~~~~ 165 (286)
T PF04321_consen 141 ----PNALILRTSWVYGPS----GRNFLRWLLR 165 (286)
T ss_dssp ----SSEEEEEE-SEESSS----SSSHHHHHHH
T ss_pred ----CCEEEEecceecccC----CCchhhhHHH
Confidence 378999999999983 2455555554
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-24 Score=187.82 Aligned_cols=168 Identities=29% Similarity=0.349 Sum_probs=106.7
Q ss_pred EEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCc--ccccccc---------c---CCCceEEEecccccccc------
Q 021681 121 VTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGR--KDNLVHH---------F---RNPRFELIRHDVVEPIL------ 178 (309)
Q Consensus 121 ITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~--~~~~~~~---------~---~~~~v~~~~~Dl~~~~~------ 178 (309)
|||||||+|++|+++|++++. +|+|+.|..... .+.+... . ...++.++.+|+.++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987 899999975331 1111111 1 25799999999988743
Q ss_pred -----CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCC-----C
Q 021681 179 -----LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETY-----W 247 (309)
Q Consensus 179 -----~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~-----~ 247 (309)
.++|+|||||| ...+..++....++||.||.+++++|.+.+. +|+|+||..+.+.... ...|.. .
T Consensus 81 ~~~L~~~v~~IiH~Aa---~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAA---SVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--S---S-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH--
T ss_pred hhccccccceeeecch---hhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccccc
Confidence 46999999995 4555667777889999999999999986554 8999999555444332 221110 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
.........+.|..||+.+|++++.++++.|++++|+|||.|+|.
T Consensus 157 ~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~ 201 (249)
T PF07993_consen 157 DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD 201 (249)
T ss_dssp EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S
T ss_pred cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc
Confidence 011223344789999999999999998888999999999999993
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=184.05 Aligned_cols=172 Identities=33% Similarity=0.571 Sum_probs=135.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c--CCCCEEEEcccC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIYHLACP 190 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~--~~~D~Vih~A~~ 190 (309)
+||||||+|+||+.++++|+++|++|+++++.................+..+.+|+.++. + .++|+||||||.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 589999999999999999999999998887643322222211111125667788887662 2 269999999987
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
........++...++.|+.++.+++++|.+.+. ++|++||..+|+.....+.+|+ ++..+.+.|+.+|..+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y~~sK~~~e~~ 155 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPYGRSKLMSERI 155 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCchHHHHHHHHHH
Confidence 544434445667889999999999999999886 8999999999987666677777 5666778999999999999
Q ss_pred HHHHHHh-cCCcEEEEEeCceeCCCC
Q 021681 270 TMDYHRG-AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 270 v~~~a~~-~gi~~~ivRp~~V~Gp~~ 294 (309)
++.++.+ .+++++++||+++|||..
T Consensus 156 ~~~~~~~~~~~~~~ilR~~~v~g~~~ 181 (328)
T TIGR01179 156 LRDLSKADPGLSYVILRYFNVAGADP 181 (328)
T ss_pred HHHHHHhccCCCEEEEecCcccCCCC
Confidence 9998877 799999999999999964
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=186.23 Aligned_cols=169 Identities=27% Similarity=0.399 Sum_probs=134.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+|+||||+||||+++++.|+++|++|++++|....... +....++++.+|+.+. .+.++|+|||+|+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN-----LEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc-----cccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 479999999999999999999999999999986432211 1223577788888764 466899999999743
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
. ....++...+++|+.++.++++++.+.++ ++|++||..+|+. ....+.+|+... .+....+.|+.+|.++|++
T Consensus 76 ~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~~ 151 (328)
T TIGR03466 76 R--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQA 151 (328)
T ss_pred c--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHHH
Confidence 2 23346778899999999999999999886 8999999999985 344566776221 1222346899999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
++.++.+.+++++++||+++|||+.
T Consensus 152 ~~~~~~~~~~~~~ilR~~~~~G~~~ 176 (328)
T TIGR03466 152 ALEMAAEKGLPVVIVNPSTPIGPRD 176 (328)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCCC
Confidence 9999888899999999999999975
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=183.89 Aligned_cols=187 Identities=25% Similarity=0.266 Sum_probs=137.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc--ccc---------ccccCCCceEEEeccccccc-------
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DNL---------VHHFRNPRFELIRHDVVEPI------- 177 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~--~~~---------~~~~~~~~v~~~~~Dl~~~~------- 177 (309)
++||+||||||+|.+|+++|+.+-. +|+|++|-..... ..+ .......+++++.+|+.++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999998865 9999998543111 111 12234578999999998763
Q ss_pred ----cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCc-EEEEeccccccCCCCCCCCCC----CCC
Q 021681 178 ----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKET----YWG 248 (309)
Q Consensus 178 ----~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r-~v~iSS~~vy~~~~~~~~~E~----~~~ 248 (309)
...+|.|||||+ .+++-..+.+....||.||..++++|...+.| +.|+||.+|+........+++ ...
T Consensus 81 ~~~La~~vD~I~H~gA---~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAA---LVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecch---hhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 345999999995 44555677888899999999999999887765 999999999865433222221 111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC--CCCCCcHHHHHHH
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM--CLDDGRVVSNFVA 307 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~--~~~~~~~i~~~i~ 307 (309)
........++|+.||+++|.++++.... |++++|+|||.|.|+.. ..+..-++.+|++
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~ 217 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVL 217 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHH
Confidence 1122345688999999999999997755 99999999999999865 2233344445543
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=181.75 Aligned_cols=176 Identities=24% Similarity=0.364 Sum_probs=126.7
Q ss_pred EEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEecccccc-----c----cCCCCEEEEcc
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I----LLEVDQIYHLA 188 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~----~~~~D~Vih~A 188 (309)
||||||+||||++++++|+++|+ +|+++++..... ..... .. ..+..|+.++ . +.++|+|||||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~~~~---~~-~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A 74 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KFLNL---AD-LVIADYIDKEDFLDRLEKGAFGKIEAIFHQG 74 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hhhhh---hh-eeeeccCcchhHHHHHHhhccCCCCEEEECc
Confidence 69999999999999999999997 788887643211 11111 01 1233344332 2 24799999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
+... ....++...+++|+.++.+++++|.+.++++|++||..+|+.... +..|+. .+..|.+.|+.+|..+|.
T Consensus 75 ~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~~~e~~----~~~~p~~~Y~~sK~~~e~ 147 (314)
T TIGR02197 75 ACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEA-GFREGR----ELERPLNVYGYSKFLFDQ 147 (314)
T ss_pred cccC--ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCC-Cccccc----CcCCCCCHHHHHHHHHHH
Confidence 8643 223467788999999999999999998889999999999987543 444542 223567899999999999
Q ss_pred HHHHHHH--hcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHH
Q 021681 269 LTMDYHR--GAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVA 307 (309)
Q Consensus 269 ~v~~~a~--~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~ 307 (309)
+++++.. ..+++++++||++||||+..... ..++..++.
T Consensus 148 ~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~ 190 (314)
T TIGR02197 148 YVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFN 190 (314)
T ss_pred HHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHH
Confidence 9987543 23689999999999999864322 244544443
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=176.59 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
..|+||||||+||||++|+++|+++|++|+....... ..+.+..|+.+ .++|+|||+||.....
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~-------------~~~~v~~~l~~---~~~D~ViH~Aa~~~~~ 71 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLE-------------NRASLEADIDA---VKPTHVFNAAGVTGRP 71 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccC-------------CHHHHHHHHHh---cCCCEEEECCcccCCC
Confidence 3478999999999999999999999999875421100 00011122221 2689999999976533
Q ss_pred C---CcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCC------CCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 195 H---YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE------HPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 195 ~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~------~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
. +..++...+++|+.|+.+|+++|++.+++++++||.++|+.... .++.|++ .+..+.+.|+.+|++
T Consensus 72 ~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~~ 147 (298)
T PLN02778 72 NVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKAM 147 (298)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHHH
Confidence 2 44578889999999999999999999988888999889875332 2355552 233345789999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+|.++..++ +..++|++.++|++
T Consensus 148 ~E~~~~~y~-----~~~~lr~~~~~~~~ 170 (298)
T PLN02778 148 VEELLKNYE-----NVCTLRVRMPISSD 170 (298)
T ss_pred HHHHHHHhh-----ccEEeeecccCCcc
Confidence 999998875 35678888778764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=177.41 Aligned_cols=172 Identities=26% Similarity=0.327 Sum_probs=127.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcc--cccccc-----c-----CCCceEEEecccccc-------
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRK--DNLVHH-----F-----RNPRFELIRHDVVEP------- 176 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~--~~~~~~-----~-----~~~~v~~~~~Dl~~~------- 176 (309)
+|||||||||||++|+++|+++| ++|+++.|...... +.+... . ...++.++.+|+.++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 67999998654211 011000 0 014788889998654
Q ss_pred ----ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 177 ----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 177 ----~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
...++|+|||||+... ....+...+++|+.|+.+++++|.+.+. +++++||.++|+.....+..|+......
T Consensus 81 ~~~~~~~~~d~vih~a~~~~---~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN---WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec---cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 2356999999997543 2345667788999999999999999887 5999999999976443333333211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
...+.+.|+.+|+++|.+++.+.. .|++++++|||.+||+.
T Consensus 158 ~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~ 198 (367)
T TIGR01746 158 PPGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNS 198 (367)
T ss_pred ccccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecC
Confidence 223456899999999999988754 48999999999999973
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=188.84 Aligned_cols=169 Identities=29% Similarity=0.355 Sum_probs=127.3
Q ss_pred CeEEEEcCCchhHHHHHHHHH--HCCCeEEEEecCCCCcc-cccccccCCCceEEEeccccccc----------cCCCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLI--DRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPI----------LLEVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll--~~g~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~~----------~~~~D~ 183 (309)
|+|||||||||||++|+++|+ +.|++|++++|...... ..........+++++.+|+.++. +.++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 589999999999999999999 57899999998532111 11111112246888889988741 267999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
||||||... ........+++|+.|+.+++++|++.++ ++|++||..+|+... ...+|+.+. .+..+.+.|+.+
T Consensus 81 Vih~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~-~~~~e~~~~--~~~~~~~~Y~~s 154 (657)
T PRK07201 81 VVHLAAIYD---LTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYE-GVFREDDFD--EGQGLPTPYHRT 154 (657)
T ss_pred EEECceeec---CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCcc-Cccccccch--hhcCCCCchHHH
Confidence 999998543 2345567789999999999999999876 899999999998643 234454332 122334679999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|..+|+++++ ..+++++++||++||||..
T Consensus 155 K~~~E~~~~~---~~g~~~~ilRp~~v~G~~~ 183 (657)
T PRK07201 155 KFEAEKLVRE---ECGLPWRVYRPAVVVGDSR 183 (657)
T ss_pred HHHHHHHHHH---cCCCcEEEEcCCeeeecCC
Confidence 9999999875 3589999999999999864
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=181.43 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=131.5
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcc--cccc-cc-------------------cCCC
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRK--DNLV-HH-------------------FRNP 164 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~--~~~~-~~-------------------~~~~ 164 (309)
+...+++|+|||||||||||++|+++|++.+. +|+++.|...... +.+. +. +...
T Consensus 113 I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~ 192 (605)
T PLN02503 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLS 192 (605)
T ss_pred hhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccc
Confidence 55678999999999999999999999998765 6788887543221 1110 00 0134
Q ss_pred ceEEEeccccccc-----------cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEecc
Q 021681 165 RFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTS 231 (309)
Q Consensus 165 ~v~~~~~Dl~~~~-----------~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~ 231 (309)
++..+.+|++++. ..++|+|||+|+.. .+..++...+++|+.|+.+++++|++.+ . ++|++||.
T Consensus 193 Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v---~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTa 269 (605)
T PLN02503 193 KLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANT---TFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTA 269 (605)
T ss_pred cEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccc---ccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCc
Confidence 6888999998762 25699999999753 3556788899999999999999998875 3 79999999
Q ss_pred ccccCCCCCCCCCCCCCCC--------------------C----------------------------------CCCCCC
Q 021681 232 EVYGDPLEHPQKETYWGNV--------------------N----------------------------------PIGERS 257 (309)
Q Consensus 232 ~vy~~~~~~~~~E~~~~~~--------------------~----------------------------------~~~~~~ 257 (309)
.|||... +.+.|..++.. + ..+-.+
T Consensus 270 yVyG~~~-G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pN 348 (605)
T PLN02503 270 YVNGQRQ-GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQD 348 (605)
T ss_pred eeecCCC-CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCC
Confidence 9998753 35555544310 0 011238
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
.|..||+.+|+++.... .+++++|+||+.|.+
T Consensus 349 tYt~TK~lAE~lV~~~~--~~LPv~IvRPsiV~s 380 (605)
T PLN02503 349 TYVFTKAMGEMVINSMR--GDIPVVIIRPSVIES 380 (605)
T ss_pred hHHHHHHHHHHHHHHhc--CCCCEEEEcCCEecc
Confidence 89999999999999754 479999999999933
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=165.06 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=117.5
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCC-C-
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH-Y- 196 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~-~- 196 (309)
||||||+||||++++++|+++|++|++++|+.......... .+..+..+.....+.++|+|||+|+...... .
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~~ 75 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWE-----GYKPWAPLAESEALEGADAVINLAGEPIADKRWT 75 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccce-----eeecccccchhhhcCCCCEEEECCCCCcccccCC
Confidence 69999999999999999999999999999875543221111 1111112333446678999999998543211 1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCC-c--EEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGA-K--FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY 273 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r--~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (309)
.......+++|+.++.+++++|++.++ + +++.||..+|+.....++.|+ .+..+.+.|+..+...|..+..+
T Consensus 76 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~-----~~~~~~~~~~~~~~~~e~~~~~~ 150 (292)
T TIGR01777 76 EERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEE-----DSPAGDDFLAELCRDWEEAAQAA 150 (292)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcc-----cCCCCCChHHHHHHHHHHHhhhc
Confidence 123456788999999999999999885 3 555566678987666677777 33344456777777777776543
Q ss_pred HHhcCCcEEEEEeCceeCCCC
Q 021681 274 HRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 274 a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+.+++++++||+++|||+.
T Consensus 151 -~~~~~~~~ilR~~~v~G~~~ 170 (292)
T TIGR01777 151 -EDLGTRVVLLRTGIVLGPKG 170 (292)
T ss_pred -hhcCCceEEEeeeeEECCCc
Confidence 34689999999999999963
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=162.95 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=121.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~ 183 (309)
.|++|||||+|+||++++++|+++|++|++++|+...... +.... ...+.++.+|+++.. +.++|+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDD-LKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4689999999999999999999999999999886432211 11111 236778889997762 245899
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||||||........ +++...+++|+.|+.++++++ ++.+. ++|++||..... +..
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 143 (276)
T PRK06482 80 VVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------------AYP 143 (276)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------CCC
Confidence 99999975433322 235678899999999999997 44444 899999975431 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCce---eCCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT---YGPRM 294 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V---~Gp~~ 294 (309)
+.+.|+.+|++.|.+++.++.+ +|++++++|||.+ ||++.
T Consensus 144 ~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~ 189 (276)
T PRK06482 144 GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGL 189 (276)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccc
Confidence 3478999999999999998876 5999999999988 66653
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=159.45 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=124.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------c
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~ 178 (309)
...+++|+++||||+|+||++++++|+++|++|+++++......+.. ... ...+.++.+|+++.. +
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~-~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVA-KAL-GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HHc-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45578899999999999999999999999999999987543222111 111 235678889988751 2
Q ss_pred CCCCEEEEcccCCCCCC------CcCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH------YKYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|++|||||...... ..+++...+++|+.++.++++++.+ .+.++|++||...+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~------------ 150 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS------------ 150 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC------------
Confidence 35899999998753221 1224678899999999999999864 2348999999765421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
....+.|+.+|++.+.+++.++.+. ++++++++||.+.++.
T Consensus 151 ----~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~ 193 (255)
T PRK05717 151 ----EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARD 193 (255)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCc
Confidence 1123579999999999999998875 5999999999999874
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=180.12 Aligned_cols=189 Identities=18% Similarity=0.172 Sum_probs=139.5
Q ss_pred CCCCCCCCcccccchhhhhhhhhhccccCCCCCCCCCCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 72 LGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.-++.+.|.++||..|+.+ +.++|....+++|++|||||+|+||++++++|+++|++|++++++..
T Consensus 384 ~~~~~~~f~~eyw~~e~~k--------------l~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~ 449 (676)
T TIGR02632 384 SLPEQEAFDIEYWPLEEAK--------------LRRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLE 449 (676)
T ss_pred cCchhhccchhhhhhhHHh--------------hccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4467889999999999655 33455555678899999999999999999999999999999998643
Q ss_pred Cccccccc---ccCCCceEEEecccccc------------ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHH
Q 021681 152 GRKDNLVH---HFRNPRFELIRHDVVEP------------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTL 212 (309)
Q Consensus 152 ~~~~~~~~---~~~~~~v~~~~~Dl~~~------------~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~ 212 (309)
........ ......+..+.+|++++ .+.++|+||||||........ +++...+++|+.+..
T Consensus 450 ~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~ 529 (676)
T TIGR02632 450 AAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYF 529 (676)
T ss_pred HHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 32211111 11223566788999876 124699999999975433222 246778999999988
Q ss_pred HHHHHHH----HcC--CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEE
Q 021681 213 NMLGLAK----RVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRI 283 (309)
Q Consensus 213 ~ll~~a~----~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~i 283 (309)
.+++.+. +.+ .++|++||...+. +......|+.+|++.+.+++.++.+ .|++++.
T Consensus 530 ~l~~~al~~m~~~~~~g~IV~iSS~~a~~----------------~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~ 593 (676)
T TIGR02632 530 LVAREAFRQMREQGLGGNIVFIASKNAVY----------------AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNT 593 (676)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeChhhcC----------------CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 8776543 333 4799999965431 1223468999999999999999876 4799999
Q ss_pred EEeCcee
Q 021681 284 ARIFNTY 290 (309)
Q Consensus 284 vRp~~V~ 290 (309)
++||.|+
T Consensus 594 V~Pg~V~ 600 (676)
T TIGR02632 594 VNPDAVL 600 (676)
T ss_pred EECCcee
Confidence 9999987
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=163.55 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=126.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc-----c-------CC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI-----L-------LE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~-----~-------~~ 180 (309)
.++|+++||||+|+||.+++++|+++|++|++++|+.....+...+. .....+.++.+|+.+.. + ..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999988644322211111 12246778888987751 1 24
Q ss_pred CCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHH----cC---CcEEEEeccccccCCCCC----CCCC
Q 021681 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEVYGDPLEH----PQKE 244 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~r~v~iSS~~vy~~~~~~----~~~E 244 (309)
+|+||||||+..... ..++++..+++|+.|+.++++++.+ .+ .|+|++||...+...... +..+
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~ 163 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA 163 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence 999999999643321 2235678899999999999888754 22 389999997665321110 0000
Q ss_pred C--C-------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCcEEEEEeCceeCCCC
Q 021681 245 T--Y-------------WGNVNPIGERSCYDEGKRTAETLTMDYHRGA----GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~--~-------------~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~----gi~~~ivRp~~V~Gp~~ 294 (309)
+ . +....+..+...|+.||++.+.+++.+++++ |++++.++||+|++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~ 232 (322)
T PRK07453 164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPL 232 (322)
T ss_pred chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcc
Confidence 0 0 0011234567889999999999988888764 79999999999987543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=160.22 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=125.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC--CCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+++||||+|+||++++++|+++|++|++++|+....++ ....+. ..++..+.+|++++. +.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDE-VAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999986533221 111111 245778889987651 24
Q ss_pred CCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|+||||||...... ..+++...+++|+.++..+++++.+. +.++|++||...+
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~---------------- 145 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLR---------------- 145 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhc----------------
Confidence 6899999998643311 12356788999999999999998652 3489999997654
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.+|.+.+.+++.++.+ .++++++++||.++||..
T Consensus 146 ~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~ 192 (258)
T PRK07890 146 HSQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPL 192 (258)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHH
Confidence 23334568999999999999999865 489999999999999853
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=157.51 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=121.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEeccccccc------------cC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~~------------~~ 179 (309)
++++||||||+|+||++++++|+++|++|++++|......+.....+ ....+.++.+|+++.. +.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999999999875432222111111 1234677888987752 23
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
.+|+||||||......+ .+++...+++|+.|+.++++++.+. +..++.+++.... .
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 148 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE----------------R 148 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc----------------C
Confidence 58999999986433222 1246778999999999999998642 2356665553211 3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~~ 294 (309)
+..+.+.|+.+|+++|.+++.++.+. +++++++|||.++||..
T Consensus 149 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~ 193 (249)
T PRK09135 149 PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPED 193 (249)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccc
Confidence 55566889999999999999998764 69999999999999974
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=159.93 Aligned_cols=161 Identities=14% Similarity=0.043 Sum_probs=121.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
.+|+|+||||+|+||++++++|+++|++|++++|+...... +... ...++..+.+|+.++. +..+|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD-FEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH-HHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999999999986433211 1111 1235677888887661 23589
Q ss_pred EEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||........+ .+...+++|+.|+.++++++.+ .+ .++|++||...+. +.
T Consensus 81 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~----------------~~ 144 (277)
T PRK06180 81 VLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI----------------TM 144 (277)
T ss_pred EEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC----------------CC
Confidence 9999999754332222 3567799999999999998643 33 3899999976552 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+...|+.+|++.|.+++.++.+ .|+++++++||.+.++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 187 (277)
T PRK06180 145 PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW 187 (277)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence 24468999999999999998866 48999999999998764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=161.79 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=125.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc--CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|++|||||+|+||++++++|+++|++|++.++...... +.....+ ....+..+.+|+.+. .+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999988776432211 1111111 123567788898775 13
Q ss_pred CCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.++|+||||||...... ..+++...+++|+.|+.++++++.+. +.++|++||...|..
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 198 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP-------------- 198 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC--------------
Confidence 46999999998643221 22357889999999999999998753 348999999887732
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
......|+.+|.+.+.+++.++.+ .|+++++++||.|.+|..
T Consensus 199 --~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~ 243 (300)
T PRK06128 199 --SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQ 243 (300)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCc
Confidence 223356999999999999999876 489999999999999854
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=157.95 Aligned_cols=164 Identities=17% Similarity=0.017 Sum_probs=120.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|++|||||+|+||++++++|+++|++|++++|+.....+...... ....+.++.+|+.+.. ...
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999886533222111110 1235677889987752 235
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHH----HHHHHHHH-HHcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMG----TLNMLGLA-KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~g----t~~ll~~a-~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+||||||....... .+++...+++|+.+ +..+++++ ++.+. ++|++||...+.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~--------------- 149 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE--------------- 149 (262)
T ss_pred CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC---------------
Confidence 8999999987543222 22456778899999 55566666 55544 899999965442
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|++.+.+++.++.+ .+++++++|||.+++|.
T Consensus 150 -~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~ 194 (262)
T PRK13394 150 -ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPL 194 (262)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchh
Confidence 1223467999999999999998876 48999999999999985
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=155.93 Aligned_cols=164 Identities=17% Similarity=0.068 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++|+++||||+|+||++|+++|+++|++|++++|+.....+..........+..+.+|+.++. +..+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999999999999999999999999999998864432221111112345788899998761 2469
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||........ +++...+++|+.++.++++.+. +.+. +++++||...+. .
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------------~ 146 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------------G 146 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc----------------C
Confidence 9999999965432222 2356678999999988777653 4444 899999975432 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+. |+++++++||.+++|.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~ 190 (252)
T PRK06138 147 GRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPY 190 (252)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcc
Confidence 1233679999999999999998765 8999999999999885
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=155.22 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=123.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+||||||+|+||++|+++|+++|++|+++.+......+...... ....+.++.+|+.++. +.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 346799999999999999999999999998887765432222221111 1345778888987652 24
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|.|||+||....... .+.+...+++|+.++.++++.+. +.+. ++|++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~-------------- 149 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG-------------- 149 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC--------------
Confidence 68999999996443332 22457789999999999999873 4444 8999999876632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
......|+.+|++.+.+++.++.+ .+++++++|||.++|+..
T Consensus 150 --~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~ 194 (249)
T PRK12825 150 --WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMK 194 (249)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcc
Confidence 223467999999999999988765 589999999999999864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=156.04 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC--CCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++|+||||||+|+||++++++|+++|++|++++|+.....+.. ..+. ..++..+.+|+.++ .+.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA-ESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999988644322111 1111 23577788898775 124
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|+||||||......+. +.++.++++|+.++.++++++.+. + .++|++||...+
T Consensus 87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------------- 150 (255)
T PRK07523 87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA---------------- 150 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc----------------
Confidence 589999999875433322 245778899999999999988653 3 389999997543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +|+++++++||.+.++.
T Consensus 151 ~~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~ 196 (255)
T PRK07523 151 LARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPL 196 (255)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCch
Confidence 12234568999999999999999864 58999999999999985
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=155.23 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=120.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.....+... .. ...+..+.+|+.+. .+..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA-EL-GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-Hh-CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999999875432221111 11 23566777887654 12468
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH---cCCcEEEEecc-ccccCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR---VGAKFLLTSTS-EVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~---~~~r~v~iSS~-~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|+||||||........ +++...+++|+.++.++++++.+ .+.++|++||. ..|+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~----------------- 144 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM----------------- 144 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-----------------
Confidence 9999999865432222 35678899999999999999975 23478888774 44432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...+.|+.+|++.|.+++.++.+. |+++++++||.+++|.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~ 187 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPL 187 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHH
Confidence 123689999999999999887654 8999999999999984
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=156.68 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=119.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~ 183 (309)
+|+|+||||+|+||.+++++|+++|++|++++++.....+.....-...++..+.+|++++. ...+|+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 47999999999999999999999999999999864332211111111126778899998751 234899
Q ss_pred EEEcccCCCCCCCc-----CChhHHHHHHHHHHHHHHHH----HHHcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK-----YNPVKTIKTNVMGTLNMLGL----AKRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 184 Vih~A~~~~~~~~~-----~~~~~~~~~Nv~gt~~ll~~----a~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|||||........ +++...+++|+.|+.++++. +++.+ .++|++||...+. +.
T Consensus 82 lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~----------------~~ 145 (257)
T PRK07024 82 VIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR----------------GL 145 (257)
T ss_pred EEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------------CC
Confidence 99999865432211 24678899999999998874 34444 3899999965441 12
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ +|+++++++||.+.+|.
T Consensus 146 ~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 188 (257)
T PRK07024 146 PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM 188 (257)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence 22357999999999999888744 58999999999998874
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=156.47 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=123.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|+++||||+|+||.+++++|+++|++|++++++......... .. ...+..+.+|++++ .+..+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL-EI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-Hh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999999999999886543222111 11 23577888898765 12469
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc------CCcEEEEeccc-cccCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSE-VYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~------~~r~v~iSS~~-vy~~~~~~~~~E~~~~~~ 250 (309)
|++|||||....... .+++...+++|+.++.++++++.+. +.++|++||.. .++
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 146 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG--------------- 146 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC---------------
Confidence 999999986533222 2356778999999999999998643 24799999964 332
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|.+.+.+++.++.+ .|++++.++||.+++|.
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~ 190 (257)
T PRK07067 147 --EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPM 190 (257)
T ss_pred --CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchh
Confidence 123467999999999999998875 58999999999999984
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=154.20 Aligned_cols=166 Identities=19% Similarity=0.085 Sum_probs=124.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|+|+||||+|+||.+++++|+++|++|++++|+............ ....+.++.+|+.++. +..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999999999999987432222111111 1235778889987751 236
Q ss_pred CCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|.||||||...... ..+++...+++|+.++.++++++. +.+. ++|++||...+..
T Consensus 84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~--------------- 148 (251)
T PRK12826 84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV--------------- 148 (251)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc---------------
Confidence 999999998654422 223457789999999999999874 3333 7999999876511
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|.+++.+++.++.+ .+++++++|||+++||..
T Consensus 149 ~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~ 194 (251)
T PRK12826 149 GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMA 194 (251)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchh
Confidence 2223467999999999999998765 489999999999999965
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=156.75 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
++|+||||||+|+||++++++|+++|++|++++|+...... ..... ...+.++.+|++++ .+..+|
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLAD-LAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 35789999999999999999999999999999986433221 11111 23466778888765 124689
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||....... .+++...+++|+.++.++++.+ ++.+. ++|++||...+.. .
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~----------------~ 143 (275)
T PRK08263 80 IVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA----------------F 143 (275)
T ss_pred EEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC----------------C
Confidence 99999997543322 2356788999999998888876 34444 8999999876632 2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
...+.|+.+|++.+.+++.++.+ .|++++++|||.+.++..
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~ 187 (275)
T PRK08263 144 PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWA 187 (275)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCcc
Confidence 23467999999999999998765 589999999999887643
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=153.39 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=124.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---ccc--CCCceEEEeccccccc-----------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHF--RNPRFELIRHDVVEPI----------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~--~~~~v~~~~~Dl~~~~----------- 177 (309)
.++|+++||||+|+||++++++|+++|++|+++++......+... ..+ ....+.++.+|+.+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998765333222211 111 1246778889987761
Q ss_pred -cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH-----HcCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK-----RVGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~-----~~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..++|.||||||......+. +++...+++|+.++.++++++. +.+. ++|++||...+..
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 153 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG---------- 153 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC----------
Confidence 24689999999875532222 2456789999999999999987 3343 7999999766532
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|.+.+.+++.++.+ .++++++++||.+.+|..
T Consensus 154 ------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~ 198 (249)
T PRK12827 154 ------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMA 198 (249)
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcc
Confidence 223467999999999999998765 389999999999999853
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=153.61 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=122.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++++|||||+|+||++++++|+++|++|++++++.....+...... ...++.++.+|+.+.. +.++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999876433221111110 1245778889987651 2368
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||........ ..+...+++|+.++.++++++. +.+. ++|++||...+...
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~--------------- 146 (250)
T TIGR03206 82 DVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS--------------- 146 (250)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC---------------
Confidence 9999999864332222 2346779999999999988875 3443 89999998776421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+++.++.+. ++++++++||.+++|.
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~ 189 (250)
T TIGR03206 147 -SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTAL 189 (250)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchh
Confidence 223579999999999999988764 8999999999999884
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=158.04 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=122.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
..++|+++||||+|+||++++++|+++|++|+++++......+...+.-...++..+.+|+.++. +.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999999998764322211111111246778889998761 236
Q ss_pred CCEEEEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEecccc-ccCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEV-YGDPLEHPQKETYWG 248 (309)
Q Consensus 181 ~D~Vih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~v-y~~~~~~~~~E~~~~ 248 (309)
+|+||||||..... .. .+++...+++|+.|+.++++++.+. + .+++++||... ++.
T Consensus 95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------ 162 (280)
T PLN02253 95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG------------ 162 (280)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC------------
Confidence 99999999864321 11 2356788999999999999887542 2 37899988653 321
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.|.+++.++.+. |++++.++||.+.++.
T Consensus 163 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~ 205 (280)
T PLN02253 163 -----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTAL 205 (280)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence 112469999999999999998764 8999999999998763
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=153.74 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=121.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++++|++|||||+|+||++++++|+++|++|++++|+.... ..+..+.+|+.++ .+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999998753221 2567788888776 1246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||........ +++...+++|+.|+.++++++.+ .+ .++|++||...+.
T Consensus 73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 136 (258)
T PRK06398 73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA---------------- 136 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------------
Confidence 99999999974332222 24677899999999999888754 23 4899999987652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+. +++++.++||.+-.|
T Consensus 137 ~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~ 179 (258)
T PRK06398 137 VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTP 179 (258)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccch
Confidence 23345789999999999999998774 499999999998765
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.25 Aligned_cols=164 Identities=18% Similarity=0.121 Sum_probs=122.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++++.....+...+.. ...++..+.+|++++ .+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999876433222111111 123567788998775 1245
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||......+. +++...+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 84 id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~--------------- 148 (275)
T PRK05876 84 VDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV--------------- 148 (275)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc---------------
Confidence 89999999975433322 2456788999999999999874 333 4799999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+.+.++.+ .|+++++++||.+.++.
T Consensus 149 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 193 (275)
T PRK05876 149 -PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNL 193 (275)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccccc
Confidence 3334578999999977777777655 48999999999998874
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=150.06 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=125.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|.++||||+++||.++++.|++.|++|++..|..+..++...+. ....+.....|++|. .+.++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~-~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI-GAGAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh-ccCceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 35689999999999999999999999999999998655444333222 225677888899887 23569
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||....... .++|+.++++|+.|..++.++.. +.+ ..+|.+||.+.. .+
T Consensus 83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~----------------~~ 146 (246)
T COG4221 83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR----------------YP 146 (246)
T ss_pred cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc----------------cc
Confidence 999999997544322 23789999999999999988864 333 389999997632 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
....+.|+.||++..++...+.++. +++++.+-||.|-..
T Consensus 147 y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~ 189 (246)
T COG4221 147 YPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETT 189 (246)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecce
Confidence 3444789999999999998887664 899999999999553
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=153.28 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=121.9
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------c
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~ 178 (309)
....++|++|||||+|+||++++++|+++|++|++++|+.... ....+.++.+|+.++. +
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3346789999999999999999999999999999999864321 1235677888887752 3
Q ss_pred CCCCEEEEcccCCCCC------CCcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV------HYKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|+||||||..... ...+++...+++|+.++.++++++. +.+. ++|++||...+..
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~----------- 144 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP----------- 144 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-----------
Confidence 4689999999853211 1223567889999999988877653 3343 7999999765421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.+|.+.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 145 ----~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~ 189 (260)
T PRK06523 145 ----LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEA 189 (260)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcc
Confidence 1113467999999999999999866 38999999999999874
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=159.49 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=124.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
..++|+|+||||+|+||.+++++|+++|++|++++|+.....+...+. ..+.++.+|+.+.. +.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999998644322211111 23677888987761 246
Q ss_pred CCEEEEcccCCCCCC--CcCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|+||||||...... ..+.++..+++|+.|+..+++.+ ++.+ .++|++||...+.... ..++..+ ..+.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~--~~~~~~~--~~~~ 175 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPI--RWDDPHF--TRGY 175 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCC--CccccCc--cCCC
Confidence 999999999654322 22357888999999987777654 3444 4899999975432111 0111100 1233
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+...|+.||.+.+.+++.++.+ .|+++++++||.|.+|..
T Consensus 176 ~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~ 219 (315)
T PRK06196 176 DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ 219 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence 45578999999999999988765 489999999999999853
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=153.85 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=120.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
+++|+||||+|+||++++++|+++|++|++++|+...... ...+.++.+|+.++ .+..+|+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~ 76 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------IPGVELLELDVTDDASVQAAVDEVIARAGRIDV 76 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence 5689999999999999999999999999999986433221 23567788898776 1245899
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||||||........ +++...+++|+.|+.++++++ ++.+. ++|++||...+. +..
T Consensus 77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 140 (270)
T PRK06179 77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL----------------PAP 140 (270)
T ss_pred EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC----------------CCC
Confidence 99999975433222 246788999999999999885 44454 899999976552 122
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 141 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 141 YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 2367999999999999988765 59999999999998874
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=154.79 Aligned_cols=163 Identities=14% Similarity=0.057 Sum_probs=121.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.|+++||||+|+||++++++|+++|++|+++++............+ ...++.++.+|++++. +..+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999999875432211111111 1246788899998751 2468
Q ss_pred CEEEEcccCCCCCC------CcCChhHHHHHHHHHHHHHHHHHHHc-----C-----C-cEEEEeccccccCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH------YKYNPVKTIKTNVMGTLNMLGLAKRV-----G-----A-KFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 182 D~Vih~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~-----~-----~-r~v~iSS~~vy~~~~~~~~~E 244 (309)
|+||||||...... ..+.+...+++|+.++.++++++.+. + . ++|++||...+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 152 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM--------- 152 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc---------
Confidence 99999998643211 12346778999999999999887542 1 2 599999976542
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+.+.|+.+|++.|.+++.++.+ +|+++++++||.+.++..
T Consensus 153 -------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~ 198 (256)
T PRK12745 153 -------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMT 198 (256)
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccc
Confidence 2223467999999999999999865 589999999999998754
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=155.14 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=118.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.. .. .....+ ....+..+.+|+.+. .+.
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999988632 11 111111 123566778888775 124
Q ss_pred CCCEEEEcccCCCC-CC----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||.... .. ...++...+++|+.++..+++.+. +.+. ++|++||...++.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------- 150 (260)
T PRK12823 84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------- 150 (260)
T ss_pred CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-------------
Confidence 69999999985321 11 123467788999999887766554 4443 8999999876531
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|++.+.+++.++.+. |++++.++||+|++|.
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 192 (260)
T PRK12823 151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPP 192 (260)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcc
Confidence 12469999999999999998775 8999999999999973
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=158.30 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-cccccccc--CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++||||+|+||++++++|+++|++|+++++..... .+.+.+.. ....+..+.+|+.++ .+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999877543211 11111111 123566788898775 23
Q ss_pred CCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|++|||||...... ..+++...+++|+.|+.++++++.+. +.++|++||...+..
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~-------------- 192 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP-------------- 192 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC--------------
Confidence 46899999998632111 12357888999999999999998653 358999999877632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
......|+.+|++.+.+++.++.+ .|+++++++||.|++|..
T Consensus 193 --~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~ 237 (294)
T PRK07985 193 --SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQ 237 (294)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccc
Confidence 222357999999999999999877 589999999999999853
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-19 Score=176.11 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=117.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc--CCCCEEEEcccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACPA 191 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~--~~~D~Vih~A~~~ 191 (309)
...|+||||||+||||++|++.|.++|++|...... +.+.+.....+ .++|+|||||+..
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~------------------l~d~~~v~~~i~~~~pd~Vih~Aa~~ 439 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGR------------------LEDRSSLLADIRNVKPTHVFNAAGVT 439 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEeeccc------------------cccHHHHHHHHHhhCCCEEEECCccc
Confidence 355799999999999999999999999888421100 01111111222 2689999999976
Q ss_pred CCC---CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCC------CCCCCCCCCCCCCCCC-CCCHHHH
Q 021681 192 SPV---HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL------EHPQKETYWGNVNPIG-ERSCYDE 261 (309)
Q Consensus 192 ~~~---~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~------~~~~~E~~~~~~~~~~-~~~~Y~~ 261 (309)
... ..+.++...+++|+.|+.+|+++|++.+++++++||..+|+... ..++.|++ +.. +.+.|+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~-----~~~~~~~~Yg~ 514 (668)
T PLN02260 440 GRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED-----KPNFTGSFYSK 514 (668)
T ss_pred CCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC-----CCCCCCChhhH
Confidence 432 23457888999999999999999999999999999999987421 23666663 333 3489999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
||+++|++++.+. ++.++|+.++||.+.. ....++..+++
T Consensus 515 sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~-~~~nfv~~~~~ 554 (668)
T PLN02260 515 TKAMVEELLREYD-----NVCTLRVRMPISSDLS-NPRNFITKISR 554 (668)
T ss_pred HHHHHHHHHHhhh-----hheEEEEEEecccCCC-CccHHHHHHhc
Confidence 9999999998864 3567788888864321 12345555443
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=174.61 Aligned_cols=190 Identities=17% Similarity=0.116 Sum_probs=140.1
Q ss_pred CCCCCCcccccchhhhhhhhhhccccCCCCCCCCCCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc
Q 021681 74 PPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (309)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~ 153 (309)
+....+++++|..++.+ ..+.|......+|+||||||+|+||+++++.|+++|++|++++++....
T Consensus 394 ~~~~~f~i~~~~~e~a~--------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 394 SEQEAFDIEYWSLEQAK--------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred Chhhhcceeeehhhhhh--------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 45678889999988654 2223333346789999999999999999999999999999999865432
Q ss_pred ccccccccCCCceEEEeccccccc------------cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHH
Q 021681 154 KDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGL 217 (309)
Q Consensus 154 ~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~ 217 (309)
............+..+.+|++++. +.++|+||||||........ +.+...+++|+.|+.+++++
T Consensus 460 ~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 539 (681)
T PRK08324 460 EAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVARE 539 (681)
T ss_pred HHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 221111111136778888887751 24699999999975443322 34677899999999999887
Q ss_pred HH----HcC--CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCc
Q 021681 218 AK----RVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFN 288 (309)
Q Consensus 218 a~----~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~ 288 (309)
+. +.+ .+||++||...+. +......|+.+|.+.+.+++.++.+. |+++++++|+.
T Consensus 540 ~~~~l~~~~~~g~iV~vsS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~ 603 (681)
T PRK08324 540 AVRIMKAQGLGGSIVFIASKNAVN----------------PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDA 603 (681)
T ss_pred HHHHHHhcCCCcEEEEECCccccC----------------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCce
Confidence 64 333 4899999976542 22234689999999999999998764 69999999999
Q ss_pred ee-CCC
Q 021681 289 TY-GPR 293 (309)
Q Consensus 289 V~-Gp~ 293 (309)
|| +++
T Consensus 604 v~~~t~ 609 (681)
T PRK08324 604 VVRGSG 609 (681)
T ss_pred eecCCc
Confidence 98 654
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=153.11 Aligned_cols=175 Identities=30% Similarity=0.364 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc-----ccccCCCceEEEecccccc-------ccCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-----VHHFRNPRFELIRHDVVEP-------ILLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~-----~~~~~~~~v~~~~~Dl~~~-------~~~~~D 182 (309)
++|++||||-||+-|++|++.|++.|++|..+.|......... .....+.++.+..+|++|. ...++|
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 3689999999999999999999999999999998644332221 1233456788999999997 224699
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
-|+|+|+..+...+.+.+..+.+++-.||.+|+++.+-.+ +||...||+..||...+.|.+|+ +|+.|.++|
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSPY 155 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 155 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCHH
Confidence 9999999988888888899999999999999999998764 48999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+.+|..+-.+...|.+.+|+-.+.-..+|--+|..
T Consensus 156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~R 190 (345)
T COG1089 156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLR 190 (345)
T ss_pred HHHHHHHHheeeehHhhcCceeecceeecCCCCCC
Confidence 99999999999999888999999888888888864
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=152.71 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=123.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccccCCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++|+|+||||+|+||.+++++|+++|++|++++|...... +.... ....+..+.+|+++. ...+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA--LGRRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 57889999999999999999999999999999987532111 11111 123577888998766 1246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||........ +++...+++|+.++.++++++.+ .+ .++|++||...|..
T Consensus 81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------- 146 (248)
T TIGR01832 81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG-------------- 146 (248)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC--------------
Confidence 99999999875433222 25677899999999999998753 33 38999999877632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+. |+++++++||.|..+.
T Consensus 147 --~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 190 (248)
T TIGR01832 147 --GIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNN 190 (248)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcc
Confidence 1123579999999999999998874 8999999999998874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=160.19 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=112.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+|+|||||||||++++++|+++|++|++++|+..... ......++++.+|+.++ ++.++|+|||+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~-----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS-----FLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh-----hHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 58999999999999999999999999999998643211 11123578888998775 578899999997531
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
..+.....++|+.++.+++++|++.++ |+|++||..+.. . +...|..+|..+|.++
T Consensus 76 -----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~---------------~---~~~~~~~~K~~~e~~l 132 (317)
T CHL00194 76 -----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ---------------Y---PYIPLMKLKSDIEQKL 132 (317)
T ss_pred -----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc---------------c---CCChHHHHHHHHHHHH
Confidence 123445677999999999999999997 899999864321 0 1245889999999876
Q ss_pred HHHHHhcCCcEEEEEeCceeCC
Q 021681 271 MDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
+ +.+++++++||+.+|+.
T Consensus 133 ~----~~~l~~tilRp~~~~~~ 150 (317)
T CHL00194 133 K----KSGIPYTIFRLAGFFQG 150 (317)
T ss_pred H----HcCCCeEEEeecHHhhh
Confidence 5 46899999999988864
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=156.28 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=119.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc-----c-------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-----I-------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~-----~-------~~~ 180 (309)
.++|++|||||+|+||++++++|+++|++|++++++.....+...+.. ....+..+.+|+++. . +..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999999999986443222221111 134577789999875 1 235
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcC-------CcEEEEeccccccCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-------AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-------~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+|+||||||........ +++...+++|+.|+.++++++ .+.+ .++|++||...+..
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 154 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA--------- 154 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---------
Confidence 89999999975543222 345677999999999987774 3332 37999999876632
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~-----gi~~~ivRp~~V~Gp 292 (309)
....+.|+.+|++.+.+++.++.+. ++++..+.||.|..+
T Consensus 155 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~ 199 (287)
T PRK06194 155 -------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG 199 (287)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc
Confidence 2234679999999999999987764 478888999888543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=155.31 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=118.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c--------CCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L--------LEV 181 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~--------~~~ 181 (309)
.+|+|+||||+|+||++++++|+++|++|++++|+.....+ + ....++.+.+|++++. + ..+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~-l----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA-L----EAEGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-H----HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 35799999999999999999999999999999986433221 1 1124677888887751 1 358
Q ss_pred CEEEEcccCCCCCCCcC----ChhHHHHHHHHHH----HHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGT----LNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt----~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||........+ ++...+++|+.|+ ..+++.+++.+. ++|++||...+ .+
T Consensus 78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~----------------~~ 141 (277)
T PRK05993 78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGL----------------VP 141 (277)
T ss_pred cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhc----------------CC
Confidence 99999998754433322 3567899999994 455556666654 89999997654 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
..+...|+.+|++.+.+++.++.+ .|+++++++||.|-.+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 142 MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 334578999999999999988754 5899999999998765
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=155.71 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=121.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEeccccccc-----------cCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEPI-----------LLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~~-----------~~~ 180 (309)
++|++|||||+|+||+++++.|+++|++|++++|.......... .......+.++.+|+.++. +..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999886433222111 1111246788889997752 245
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........ +++...+++|+.++.++++.+ ++.+. ++|++||...+.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~---------------- 145 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV---------------- 145 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC----------------
Confidence 89999999865433222 245677899999999998886 44444 899999964431
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH---hcCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~---~~gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|++.+.+++.++. .+|++++++|||.+.+|.
T Consensus 146 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~ 190 (280)
T PRK06914 146 GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNI 190 (280)
T ss_pred CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccch
Confidence 122346899999999999998874 358999999999998884
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=153.55 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=123.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
++++++++||||+|+||++++++|+++|++|++++++.... +...+. .....+.++.+|+.++. +.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999998765432 111111 01345778889997651 23
Q ss_pred CCCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
.+|+||||||.......+ +++...+++|+.++.++++.+.+ .+.+++++||...+. +
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT----------------G 146 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------------C
Confidence 689999999864332222 34677899999999999888754 234799999976542 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+ .+++++.++||.|++|.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~ 190 (258)
T PRK08628 147 QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPL 190 (258)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHH
Confidence 223468999999999999998765 48999999999999984
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=151.78 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=123.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++++++||||+|+||.+++++|+++|++|++++|+................+.++.+|+.++. +..+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999875433221111111245778889987761 2358
Q ss_pred CEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
|+|||+||...... ..+.+...+++|+.++.++++.+.+ .+ .+||++||...+.
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 146 (251)
T PRK07231 83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------------- 146 (251)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC----------------
Confidence 99999998643222 1234677899999998888887654 33 3799999987663
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+. +++++.++||.+.++.
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~ 191 (251)
T PRK07231 147 PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGL 191 (251)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCc
Confidence 33345689999999999999988653 8999999999997763
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=162.52 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=114.0
Q ss_pred CCCeEEEE----cCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc------cccCCCceEEEecccccc--cc--CC
Q 021681 115 RRLRIVVT----GGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV------HHFRNPRFELIRHDVVEP--IL--LE 180 (309)
Q Consensus 115 ~~k~VlIT----GatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~------~~~~~~~v~~~~~Dl~~~--~~--~~ 180 (309)
.+|+|||| |||||||++|+++|+++|++|++++|.......... ..+....++++.+|+.+. .+ .+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 44789999 999999999999999999999999987543211000 011123477888888652 22 46
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
+|+|||+++. +..++.+++++|++.|+ +||++||.++|+.....+..|. ++..+..
T Consensus 131 ~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~-----~~~~p~~-- 187 (378)
T PLN00016 131 FDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG-----DAVKPKA-- 187 (378)
T ss_pred ccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC-----CcCCCcc--
Confidence 9999999751 24568899999999998 8999999999987665666666 3333322
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+|..+|.+++ +.+++++++||+++|||+.
T Consensus 188 --sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 188 --GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred --hHHHHHHHHH----HcCCCeEEEeceeEECCCC
Confidence 7999998765 3589999999999999975
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=156.62 Aligned_cols=176 Identities=15% Similarity=0.067 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
..++|+++||||+|+||.+++++|+++|++|+++.|+.....+... .......+.++.+|+.+. .
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999986543322211 111234677888998775 1
Q ss_pred cCCCCEEEEcccCCCCCC---CcCChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccC-CCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH---YKYNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGD-PLEHPQKETYWGN 249 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~-~~~~~~~E~~~~~ 249 (309)
...+|++|||||...... ..+.++..+.+|+.|+..+++.+. +...++|++||...+.. .......+.
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~---- 166 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE---- 166 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence 245999999999754322 234678889999999988887765 33358999999755432 111112221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.||++.+.++++++.+ .|+.++.+.||.|-.+-
T Consensus 167 -~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 167 -RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred -ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 23445678999999999999998763 47999999999997653
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=149.75 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=122.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+|+||+.++++|+++|++|++++++. .. .....+..+.+|+.++ .+..
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF------LT--QEDYPFATFVLDVSDAAAVAQVCQRLLAETGP 76 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch------hh--hcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999998864 00 0123567788888765 1245
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+++...+++|+.++.++++++.+ .+ .++|++||.... .
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~----------------~ 140 (252)
T PRK08220 77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH----------------V 140 (252)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc----------------c
Confidence 8999999987543322 235677899999999999998753 23 379999997543 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+ +|+++++++||.+++|.
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~ 185 (252)
T PRK08220 141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDM 185 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchh
Confidence 3334578999999999999999876 68999999999999985
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=152.67 Aligned_cols=163 Identities=17% Similarity=0.055 Sum_probs=120.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
++|+|+||||+|+||++++++|+++|++|++++|+.........+.. ...++..+.+|+.++. ...+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56799999999999999999999999999999986543322111110 2346778889998761 2368
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+|||||+........ +.+...+++|+.++.++++.+ ++.+. +||++||...+. +
T Consensus 83 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~----------------~ 146 (258)
T PRK12429 83 DILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV----------------G 146 (258)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc----------------C
Confidence 9999999865433222 234567889999976666655 34444 899999976542 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+.+.|+.+|++.+.+++.++.+ .++++++++||.+++|.
T Consensus 147 ~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~ 190 (258)
T PRK12429 147 SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPL 190 (258)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchh
Confidence 234578999999999999988765 47999999999999975
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=152.89 Aligned_cols=164 Identities=14% Similarity=0.019 Sum_probs=123.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++||||+|+||.+++++|+++|++|++++|+.....+...+.. ...++..+.+|+.++ .+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999986443222111111 234577888999776 12
Q ss_pred CCCCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||...... ..+++...+++|+.++.++++++.+ .+ .++|++||...+.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 150 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK-------------- 150 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc--------------
Confidence 46999999998643222 1235778899999999999998753 33 3899999976542
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|-.|-
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~ 195 (260)
T PRK07063 151 --IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQL 195 (260)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChh
Confidence 22233579999999999999998764 7999999999997663
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=152.30 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+++||||+|+||.+++++|+++|++|++++|....... ....+ ....+..+.+|+++.. +.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAER-VAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999986432211 11111 1235667888988762 24
Q ss_pred CCCEEEEcccCCCCCC-------CcCChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-------YKYNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+|+||||||...... ..+++.+.+++|+.++.++++++.+. +.++|++||..+|.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 150 (250)
T PRK07774 83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------ 150 (250)
T ss_pred CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------------
Confidence 6899999999643211 11245678999999999999998653 24899999987662
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+.+.|+.+|++.|.+++.++++. ++++++++||.+.++..
T Consensus 151 -------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~ 193 (250)
T PRK07774 151 -------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEAT 193 (250)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccc
Confidence 13579999999999999998764 79999999999988764
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=152.17 Aligned_cols=161 Identities=17% Similarity=0.072 Sum_probs=120.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+|++|||||+|+||++++++|+++|++|++++|+...... +...+ ...++..+.+|+.++. +.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEA-AAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999986432221 11111 1246778888987762 3468
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+|||+|+........ .++...++.|+.|+..+++.+ ++.+. ++|++||...+..
T Consensus 80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~---------------- 143 (255)
T TIGR01963 80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA---------------- 143 (255)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC----------------
Confidence 9999999865432221 234667889999999988887 44454 8999999765532
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .+++++++|||.+++|.
T Consensus 144 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~ 187 (255)
T TIGR01963 144 SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPL 187 (255)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHH
Confidence 122367999999999999988765 38999999999999984
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-18 Score=148.91 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.... .....+.++.+|+.++. +..+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET-------VDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh-------hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999999999999999999999999998864320 12245677888887651 2458
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----c-C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V-G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
|+||||||....... .+.+...+++|+.++.++++++.+ . + .++|++||...+.
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 140 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR---------------- 140 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC----------------
Confidence 999999986432222 124678899999999999998754 1 2 4899999976542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+. .++++.++||.|.++.
T Consensus 141 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~ 184 (252)
T PRK07856 141 PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQ 184 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChH
Confidence 22334689999999999999998764 3899999999998774
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=153.18 Aligned_cols=158 Identities=14% Similarity=0.071 Sum_probs=117.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
++|+++||||+|+||++++++|+++|++|++++|+.....+ . ....+..+.+|+.++. ..++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~-~----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED-L----ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-H----HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 46799999999999999999999999999999886432221 1 1124677888887761 23699
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHH----HHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLG----LAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~----~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||....... .++++..+++|+.++..+++ .+++.+. ++|++||...+. +.
T Consensus 77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~~ 140 (273)
T PRK06182 77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------------YT 140 (273)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------------CC
Confidence 99999987543222 23567889999999666555 4555554 899999965431 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+++.++.+ .|+++++++||.+.+|.
T Consensus 141 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 183 (273)
T PRK06182 141 PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEW 183 (273)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCccccc
Confidence 12357999999999998887754 58999999999999875
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=153.32 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=121.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
..++|+++||||+|+||++++++|+++|++|+++++............ ...++..+.+|++++ .+..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEA-LGRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999999998876432111111111 124577788999776 1346
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||....... .++++.++++|+.++..+++++.+ .+ .++|++||...+..
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~-------------- 149 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG-------------- 149 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC--------------
Confidence 9999999997543222 235788899999999999887643 22 48999999876532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+ +|++++.++||.|-.+
T Consensus 150 --~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~ 192 (251)
T PRK12481 150 --GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATD 192 (251)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccC
Confidence 112357999999999999998875 5899999999999776
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=153.49 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------cc-CCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------IL-LEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~-~~~D~Vih 186 (309)
.++|+|+||||+|+||+.++++|+++|++|+++.|+......... ....++++.+|+.+. .+ .++|+|||
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~ 91 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAVIC 91 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence 456899999999999999999999999999998876443221111 123577888888762 34 57999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
+++..... +....+++|..++.++++++++.+. ++|++||..+|+.....+..+.+ ...++...|...|..
T Consensus 92 ~~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k~~ 163 (251)
T PLN00141 92 ATGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAKLQ 163 (251)
T ss_pred CCCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHHHH
Confidence 98753211 1223356899999999999998886 89999999999754332222211 111222334566877
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+|.+++ +.+++++++|||.++++.
T Consensus 164 ~e~~l~----~~gi~~~iirpg~~~~~~ 187 (251)
T PLN00141 164 AEKYIR----KSGINYTIVRPGGLTNDP 187 (251)
T ss_pred HHHHHH----hcCCcEEEEECCCccCCC
Confidence 777654 358999999999999864
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=151.07 Aligned_cols=169 Identities=17% Similarity=0.063 Sum_probs=123.7
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------ 176 (309)
....++|+++||||+|+||++++++|+++|++|+++++......+...+.+ ...++..+.+|+.++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999886432211111111 123567788898776
Q ss_pred ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+..+|++|||||....... .+++...+++|+.++..+++++.+ .+ .++|++||...+..
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 151 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIV----------- 151 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCC-----------
Confidence 23458999999997543222 235678899999999888887643 33 38999999764421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|++.+.+++.++.+ .|+++++++||.+.+|.
T Consensus 152 ---~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~ 197 (254)
T PRK06114 152 ---NRGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPM 197 (254)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcc
Confidence 11112357999999999999999875 48999999999998874
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=151.14 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=119.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
+|+++||||+|+||.++++.|+++|++|++++++.........+.. ....+..+.+|+.++. +.++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5799999999999999999999999999999886432221111111 1245677889998761 24689
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc------CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~------~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+||||||........ +++...+++|+.++..+++.+.+. +.++|++||...+. +
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 145 (256)
T PRK08643 82 VVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV----------------G 145 (256)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc----------------C
Confidence 999999864322221 245778999999998888776542 24899999975432 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .|++++.++||.+.+|.
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 146 NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 112367999999999999998865 48999999999998874
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=150.69 Aligned_cols=166 Identities=15% Similarity=0.036 Sum_probs=120.0
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc-----------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI----------- 177 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~----------- 177 (309)
.....+|++|||||+|+||++++++|+++|++|+++++......+.....+ ....+.++.+|+++..
T Consensus 4 ~~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 4 MSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 334567899999999999999999999999999887664322211111111 1345778889987751
Q ss_pred -cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHcC-----CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVG-----AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~-----~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|+||||||....... .+++...+++|+.|+.++++++.+.. .++|+++|...+.
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~------------ 151 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN------------ 151 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC------------
Confidence 2458999999986433221 22467789999999999999876531 3688888765442
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.|.+++.++.+. +++++.++||.++.+
T Consensus 152 ----~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~ 194 (258)
T PRK09134 152 ----LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPS 194 (258)
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCC
Confidence 11123579999999999999998764 499999999998764
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=150.00 Aligned_cols=161 Identities=18% Similarity=0.141 Sum_probs=121.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------cCCCCEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--------~~~~D~V 184 (309)
..++++++||||+|+||+++++.|+++|++|++++|+.....+ +.. ...+..+.+|+.+.. ...+|+|
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDR-LAG---ETGCEPLRLDVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH---HhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 4567899999999999999999999999999999986432221 111 113456777876652 2358999
Q ss_pred EEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||....... .+++...+.+|+.++.++++++.+. + .++|++||...+. +..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 145 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV----------------GLP 145 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC----------------CCC
Confidence 999986433221 1246677889999999999988653 2 4899999976652 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|.++|.+++.++.+ .+++++.++||.+++|.
T Consensus 146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~ 187 (245)
T PRK07060 146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPM 187 (245)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCch
Confidence 3467999999999999998865 48999999999999985
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=153.88 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=123.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..++|+++||||+|+||++++++|+++|++|++++|+.........+.. ...++..+.+|+.++. +.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4577899999999999999999999999999999986432221111111 1235677888987651 24
Q ss_pred CCCEEEEcccCCCCCCC-------------------cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEecccccc
Q 021681 180 EVDQIYHLACPASPVHY-------------------KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~-------------------~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~ 235 (309)
.+|++|||||....... .+++...+++|+.++..+++++. +.+ .++|++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 166 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT 166 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence 69999999986433211 22467889999999987776653 333 4899999987763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 167 ----------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~ 211 (278)
T PRK08277 167 ----------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQ 211 (278)
T ss_pred ----------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcc
Confidence 23344679999999999999998775 8999999999999884
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=151.15 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=124.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.++ .+.
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 356789999999999999999999999999999988643322111111 0123567788888765 124
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc-------------CCcEEEEeccccccCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-------------GAKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-------------~~r~v~iSS~~vy~~~~~~~~ 242 (309)
.+|++|||||........ +++..++++|+.++.++++++... +.++|++||...+.
T Consensus 86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 158 (258)
T PRK06949 86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR------- 158 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-------
Confidence 689999999864432222 246778999999999999877531 23799999977652
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ .++++++++||.|++|..
T Consensus 159 ---------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~ 204 (258)
T PRK06949 159 ---------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEIN 204 (258)
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcc
Confidence 2233468999999999999998876 489999999999999853
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=150.32 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=129.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++++++|||||++||.+++++|+++|++|+++.|+..+..+...+.. ....++++.+|+.++. ..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999997654443322221 1356889999998761 12
Q ss_pred CCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||......+.+ +..+++++|+.++..|..+.. +.+. ++|.++|...|
T Consensus 84 ~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~---------------- 147 (265)
T COG0300 84 PIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGL---------------- 147 (265)
T ss_pred cccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhc----------------
Confidence 5999999999876554433 456789999999988877753 3443 89999998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.|....+.|+.||+..-.+.+.+..+ .|+.+..+.||.+..+..
T Consensus 148 ~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~ 194 (265)
T COG0300 148 IPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF 194 (265)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc
Confidence 34444578999999999999888776 489999999999987643
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=149.25 Aligned_cols=164 Identities=17% Similarity=0.087 Sum_probs=121.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++++++||||+|+||++++++|+++|++|+++.+......+.....+ ...++.++.+|+.++. +.
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999876543222111111111 1235778899997761 24
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|+||||||........ +.+...+++|+.++.++++++.+. + .++|++||...+.
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 148 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA--------------- 148 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC---------------
Confidence 589999999975443322 356778999999999999998642 2 3899999965432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|.+.+.+++.++.+. ++++++++||.+.++.
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~ 193 (247)
T PRK12935 149 -GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEM 193 (247)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChh
Confidence 11234679999999999998887664 8999999999998764
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=147.01 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=121.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQI 184 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~V 184 (309)
.++++|+||||+|+||++++++|+++|+ +|++++|......+ ....+.++.+|+.++ .+..+|+|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 4668999999999999999999999998 99999986543322 224577888888765 22358999
Q ss_pred EEcccCCC-CCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||+||... .... .+++...+++|+.++.++++++.+ .+. +++++||...+. +..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~----------------~~~ 141 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV----------------NFP 141 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc----------------CCC
Confidence 99998722 2211 234667899999999999998653 333 799999977653 223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+...|+.+|.+.|.+++.++.+. +++++++|||.+.++-
T Consensus 142 ~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 142 NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 44689999999999999987663 8999999999997763
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=150.32 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=120.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEecccccc------------ccCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+|+|+||||+|+||.++++.|+++|++|++++++......... .......+..+.+|++++ .+..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999986433222111 111124578889998775 1246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccc-cccCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSE-VYGDPLEHPQKETYWGN 249 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~-vy~~~~~~~~~E~~~~~ 249 (309)
+|+||||||........ +++...+++|+.|+.++++++.+ .+ .++|++||.. .++.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------- 148 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------- 148 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC-------------
Confidence 89999999865433222 24577889999999988887654 34 3899999964 3321
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.....|+.+|++.+.+++.++.+ .|+++++++||.++++..
T Consensus 149 ----~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~ 192 (259)
T PRK12384 149 ----KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPM 192 (259)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchh
Confidence 12357999999999999988754 689999999999988754
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=153.07 Aligned_cols=163 Identities=16% Similarity=0.105 Sum_probs=121.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|++|||||+|+||.+++++|+++|++|++++|+ ....+...+.. ...++..+.+|+.++ .+..
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999986 32221111110 123577888998776 1345
Q ss_pred CCEEEEcccCCCCC-CCc----CChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV-HYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||..... ... +.+...+++|+.++..+++++. +.+.++|++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (272)
T PRK08589 83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA---------------- 146 (272)
T ss_pred cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC----------------
Confidence 89999999875321 111 2467788999999988877754 3345899999976552
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.+.||.|..+.
T Consensus 147 ~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~ 191 (272)
T PRK08589 147 ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPL 191 (272)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCch
Confidence 22233679999999999999998764 7999999999998763
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=151.40 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=117.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+++++||||+|+||++++++|+++|++|++.++............+ ....+..+.+|+.+. .+..+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999998877643222111111111 123566788898775 12368
Q ss_pred CEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEecccc-ccCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEV-YGDPLEHPQKETYW 247 (309)
Q Consensus 182 D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~v-y~~~~~~~~~E~~~ 247 (309)
|+||||||...... . .+++...+++|+.++.++++.+.+. +.++|++||... ++.+
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 151 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP---------- 151 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC----------
Confidence 99999998754322 1 1245678999999999998887543 126999999754 4311
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.....|+.+|++.+.+++.++.+. |++++++|||.++||..
T Consensus 152 ------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~ 195 (248)
T PRK06123 152 ------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIH 195 (248)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchh
Confidence 112359999999999999988764 89999999999999853
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=155.79 Aligned_cols=178 Identities=14% Similarity=0.090 Sum_probs=122.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cccccCCCceEEEeccccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~Dl~~~~------------ 177 (309)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+. +........+.++.+|+.+..
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999998864332211 111112346778889987761
Q ss_pred cCCCCEEEEcccCCCCCC--CcCChhHHHHHHHHHHHH----HHHHHHHcC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLN----MLGLAKRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~----ll~~a~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+..+|+||||||...... ..+++...+++|+.|+.. +++.+++.+ .++|++||...+.... ...++..+.
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~~-- 169 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQWE-- 169 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCcc--
Confidence 245999999999754332 234567789999999554 555555554 4899999976543111 111111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEE--EeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIA--RIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~iv--Rp~~V~Gp~ 293 (309)
.+..+...|+.||++.+.+++.++.+. +++++++ .||.|..+-
T Consensus 170 ~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 170 RRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 234456789999999999999988764 6666554 699987763
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=153.30 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=125.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
..++|++|||||+|+||.+++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. +
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999876432211111111 1235677888987651 2
Q ss_pred CCCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|+||||||...... . .+++...+++|+.++.++++++.+. +.++|++||...|..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~-------------- 188 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG-------------- 188 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC--------------
Confidence 46899999998643221 1 1245778999999999999998753 348999999887742
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+. |++++.++||.++++.
T Consensus 189 --~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~ 232 (290)
T PRK06701 189 --NETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPL 232 (290)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcc
Confidence 1123569999999999999998774 8999999999999874
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=151.51 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=120.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++|++|||||+|+||++++++|+++|++|++++|+...... +.......++.++.+|+.++. +.++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAA-TAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 466899999999999999999999999999999986432221 111112225677888887752 2469
Q ss_pred CEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHH----cCC--cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA--KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 182 D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
|+|||+||...... ..+++...+++|+.++.++++.+.+ .+. +++++||...+.
T Consensus 88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~--------------- 152 (264)
T PRK12829 88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL--------------- 152 (264)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc---------------
Confidence 99999998652221 1234678899999999999998743 332 577777754321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.......|+.+|.+.|.+++.++.+. +++++++|||+++||..
T Consensus 153 -~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~ 198 (264)
T PRK12829 153 -GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRM 198 (264)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHH
Confidence 12233579999999999999987653 89999999999999853
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=149.34 Aligned_cols=163 Identities=14% Similarity=0.041 Sum_probs=119.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCcccccccc-cCCCceEEEeccccccc------------cCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.+++++||||+|+||++++++|+++|++|+++ .|+.....+...+. .....+.++.+|++++. +..
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR 82 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46799999999999999999999999998764 44432211111111 01345778889988762 235
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........+ .+...+++|+.++.++++++.+. +. +||++||...+ .
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~ 146 (250)
T PRK08063 83 LDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI----------------R 146 (250)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc----------------c
Confidence 899999998643322222 34557889999999999988642 33 89999997654 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.|.+++.++.+ .|+++++++||.+..+.
T Consensus 147 ~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~ 191 (250)
T PRK08063 147 YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDA 191 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCch
Confidence 2334468999999999999998865 58999999999998765
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=165.01 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=120.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----------cCCCceEEEecccccc-----cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----------FRNPRFELIRHDVVEP-----IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----------~~~~~v~~~~~Dl~~~-----~~ 178 (309)
.++++||||||+|+||++++++|+++|++|++++|+........... ....++.++.+|+.+. .+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46789999999999999999999999999999998754332111100 0113578888998775 46
Q ss_pred CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
.++|+||||||.... ...++...+++|+.|+.+++++|++.++ |||++||.+++.... .+ .......
T Consensus 158 ggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~----p~------~~~~sk~ 225 (576)
T PLN03209 158 GNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF----PA------AILNLFW 225 (576)
T ss_pred cCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc----cc------cchhhHH
Confidence 789999999985421 1124567788999999999999999886 899999987642110 00 0122335
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
.|...|..+|..+. ..|+++++||||.+++|.
T Consensus 226 ~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~ 257 (576)
T PLN03209 226 GVLCWKRKAEEALI----ASGLPYTIVRPGGMERPT 257 (576)
T ss_pred HHHHHHHHHHHHHH----HcCCCEEEEECCeecCCc
Confidence 67778888887764 468999999999999874
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-18 Score=149.91 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCccccccccc-CCCceEEEeccccccc-----c--------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----L-------- 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~-----~-------- 178 (309)
.++++++||||+|+||++++++|+++|++|+++ .|......+...... ....+.++.+|+.++. +
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999998775 343322111111111 1245778889998761 1
Q ss_pred -----CCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHc--C-CcEEEEeccccccCCCCCCCCCCC
Q 021681 179 -----LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV--G-AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 -----~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~--~-~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
.++|+||||||........+ .+...+++|+.++.++++.+.+. . .++|++||..++.
T Consensus 84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----------- 152 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----------- 152 (254)
T ss_pred cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC-----------
Confidence 25899999998754333222 34677889999999999998753 2 3899999987763
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+.+.|+.+|++.+.+++.++.+ .++++++++||.+.+|-
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~ 197 (254)
T PRK12746 153 -----GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDI 197 (254)
T ss_pred -----CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcc
Confidence 2233467999999999999988775 47999999999999874
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=151.71 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=119.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ....+..+.+|++++. +.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 456899999999999999999999999999998875432211111111 1235677888987761 13
Q ss_pred CCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
++|+|||||+... ....++...+++|+.++.++++++.+. +.++|++||........ .+ +....
T Consensus 84 ~~d~vi~~ag~~~--~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~-------~~~~~ 150 (248)
T PRK07806 84 GLDALVLNASGGM--ESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK-------TMPEY 150 (248)
T ss_pred CCcEEEECCCCCC--CCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc-------CCccc
Confidence 6899999998532 122345667889999999999999864 24899999964321110 01 11124
Q ss_pred CHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 257 SCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+.|+.+|++.|.+++.++.+ .++++++++|+.+-+|
T Consensus 151 ~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~ 189 (248)
T PRK07806 151 EPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGT 189 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCc
Confidence 68999999999999998765 4899999999888776
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=150.91 Aligned_cols=162 Identities=18% Similarity=0.186 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.....+... .. ..++.++.+|+.++ .+..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA-SL-GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999986433222111 11 23577888999776 13468
Q ss_pred CEEEEcccCCCCCC---CcCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH---YKYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 182 D~Vih~A~~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|++|||||...... ..+++...+++|+.++.++++.+.+ .+.++|++||...+. +..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 145 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------------AQT 145 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------------CCC
Confidence 99999998643222 2235678899999999999988653 234899999976441 122
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|.+.+.+++.++.+ .|+++++++||.+..+-
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~ 187 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRV 187 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChh
Confidence 2357999999999999998876 48999999999987763
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=153.05 Aligned_cols=164 Identities=18% Similarity=0.084 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc---cCCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+++||||+|+||+++++.|+++|++|++++|............ ....++.++.+|+.++. +
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999988643322111111 01246777888987751 2
Q ss_pred CCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|++|||||...... ..+++..++++|+.++.++++++.+. + .+++++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 151 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------- 151 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC-------------
Confidence 36899999998542211 11235678999999999999877543 2 3799999987652
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+.+.|+.+|++.|.+++.++.+. +++++++|||.+.++.
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~ 196 (276)
T PRK05875 152 ---THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDL 196 (276)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcc
Confidence 22334789999999999999988664 6999999999998764
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=149.74 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=118.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c----CCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L----LEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~----~~~D~Vih 186 (309)
+++++||||+|+||.+++++|+++|++|++++|+.....+ +... ...+.++.+|+++.. + ..+|++||
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDE-LHTQ--SANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHHh--cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 3689999999999999999999999999999986432221 1111 235677888887761 1 23799999
Q ss_pred cccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 187 LACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 187 ~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
|||...... ..+++.+++++|+.|+.++++++.+. +.++|++||.... .+......|
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~----------------~~~~~~~~Y 141 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE----------------LALPRAEAY 141 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc----------------cCCCCCchh
Confidence 998532222 11235678999999999999998763 4579999986432 122234579
Q ss_pred HHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 260 DEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+.+|++.+.+++.++.+ .|+++++++||.+++|-
T Consensus 142 ~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~ 178 (240)
T PRK06101 142 GASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPL 178 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCC
Confidence 99999999999988743 58999999999999985
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-18 Score=153.16 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=123.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
..++|+++||||+|+||.+++++|+++|++|++++|+.....+.....-....+..+.+|+++. .+..
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999999999986443222111111123455566888775 1356
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|+||||||......+. ++++..+++|+.|+.++++.+.. .+.++|++||...+. +
T Consensus 86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 149 (296)
T PRK05872 86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA----------------A 149 (296)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC----------------C
Confidence 99999999975433222 24577899999999999998754 234899999987663 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ .|++++++.||.+..+.
T Consensus 150 ~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~ 193 (296)
T PRK05872 150 APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDL 193 (296)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchh
Confidence 223468999999999999998755 58999999999997763
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=150.03 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=118.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCC-
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE- 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~- 180 (309)
.++|+++||||+|+||+++++.|++.|++|+++++......+.+..... .++..+.+|+.++. +..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999998876532222112211111 35777888887651 123
Q ss_pred CCEEEEcccCCCCC------C----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV------H----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 181 ~D~Vih~A~~~~~~------~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+|++|||||..... . ..+++...+++|+.++.++++++.+ .+ .++|++||....
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~----------- 150 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ----------- 150 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc-----------
Confidence 99999999853210 1 1124567899999999999999853 33 389999986432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+.+.|+.+|.+.|.+++.++.+ .|++++.++||.+..+.
T Consensus 151 -----~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~ 196 (253)
T PRK08642 151 -----NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTD 196 (253)
T ss_pred -----CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCch
Confidence 23344568999999999999999876 47999999999997763
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=151.98 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
..+|+++||||+|+||++++++|+++|++|++++++.....+..... .....+.++.+|++++. +..
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 45679999999999999999999999999998887543221111110 01235777888987761 246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........ +++...+++|+.++.++++.+.+ .+ .+||++||...|..
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~--------------- 152 (274)
T PRK07775 88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ--------------- 152 (274)
T ss_pred CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC---------------
Confidence 89999999865432222 24566789999999999988753 22 37999999876632
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.|.+++.++.+. |++++++|||.+.++
T Consensus 153 -~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~ 195 (274)
T PRK07775 153 -RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTG 195 (274)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCc
Confidence 2234679999999999999988664 899999999988655
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=151.16 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc-----------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI-----------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~-----------~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ...++..+.+|+.++. +..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 578899999999999999999999999999999986443221111110 1245778888987761 245
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .++++..+++|+.+...+++.+. +.+ .++|++||...+.
T Consensus 86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~---------------- 149 (263)
T PRK08339 86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE---------------- 149 (263)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC----------------
Confidence 9999999986443322 23578889999999888776653 334 4899999987542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+. ||+++.+.||.|..+
T Consensus 150 ~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 193 (263)
T PRK08339 150 PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTD 193 (263)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccH
Confidence 22234579999999999999998774 899999999999776
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=160.99 Aligned_cols=153 Identities=21% Similarity=0.288 Sum_probs=117.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc--cccc-cCCCceEEEecccccc-----ccC----CC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHH-FRNPRFELIRHDVVEP-----ILL----EV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~--~~~~-~~~~~v~~~~~Dl~~~-----~~~----~~ 181 (309)
.++++|+|||||||||++++++|+++|++|++++|+....... .... .....++++.+|++++ .++ ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999999999999875432210 0000 0124678889999876 233 59
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHH
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (309)
|+||||++.... .....+++|+.++.+++++|++.++ +||++||.++|. +...|.
T Consensus 138 D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~-------------------p~~~~~ 193 (390)
T PLN02657 138 DVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK-------------------PLLEFQ 193 (390)
T ss_pred cEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC-------------------cchHHH
Confidence 999999874211 1223457899999999999999987 799999988762 224688
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
.+|...|..++. ...+++++++||+.+||+
T Consensus 194 ~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~ 223 (390)
T PLN02657 194 RAKLKFEAELQA--LDSDFTYSIVRPTAFFKS 223 (390)
T ss_pred HHHHHHHHHHHh--ccCCCCEEEEccHHHhcc
Confidence 999999998765 347899999999999985
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=149.51 Aligned_cols=164 Identities=14% Similarity=0.035 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|+.++. +..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 567899999999999999999999999999999886433222111110 1235667788887651 245
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+++...+++|+.++..+++.+.+. + .++|++||.....
T Consensus 87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 150 (254)
T PRK08085 87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL---------------- 150 (254)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc----------------
Confidence 8999999986432221 2356788999999999998887542 3 3899999975321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ +|++++.++||.+.++.
T Consensus 151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~ 195 (254)
T PRK08085 151 GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEM 195 (254)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcc
Confidence 2223467999999999999999876 48999999999999884
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-18 Score=149.15 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=117.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++|+++||||+|+||.+++++|+++|++|+++.+........+. ...+..+.+|+.++. +.++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR----EKGVFTIKCDVGNRDQVKKSKEVVEKEFGRV 80 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH----hCCCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999887654322211111 124667888887761 2468
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||......+ .+++...+++|+.|+..+++.+ ++.+ .++|++||...++. +
T Consensus 81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------------~ 145 (255)
T PRK06463 81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT---------------A 145 (255)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------------C
Confidence 999999987432221 2246788999999977765554 3333 48999999876632 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+ .|++++.++||.+-.+
T Consensus 146 ~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~ 188 (255)
T PRK06463 146 AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETD 188 (255)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCc
Confidence 122367999999999999999876 4899999999998655
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-18 Score=149.87 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC-CCCcccccccc-cCCCceEEEeccccccc---------------
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHH-FRNPRFELIRHDVVEPI--------------- 177 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~-~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~--------------- 177 (309)
++|+++||||+|+||.+++++|++.|++|++.++. .....+...+. .....+..+.+|+.+..
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999887532 22111111111 01223456667776531
Q ss_pred -c--CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 -L--LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 -~--~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+ ..+|++|||||........ +.++.++++|+.++..+++++.+. ..++|++||...+.
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI------------ 150 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc------------
Confidence 1 2699999999964322222 236788999999999999887653 24899999987652
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.+.||.|.+|.
T Consensus 151 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~ 195 (252)
T PRK12747 151 ----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDM 195 (252)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCch
Confidence 22234679999999999999988764 8999999999999884
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=149.16 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=122.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
.+++|+||||||+|+||.+++++|+++|++|+++++. ... +...+.+ ....+.++.+|+.+.. +
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNW-DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3578899999999999999999999999999999876 211 1111111 1245778889997761 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||....... .++++..+++|+.++..+++++.+ .+ .++|++||...+.
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 155 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ-------------- 155 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc--------------
Confidence 368999999986433222 225677899999999888877653 33 3899999987652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |+++++++||.|..+.
T Consensus 156 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~ 200 (258)
T PRK06935 156 --GGKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTAN 200 (258)
T ss_pred --CCCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccc
Confidence 22223579999999999999998764 8999999999998774
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=151.77 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=122.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~ 178 (309)
...++|+|+||||+|+||.+++++|+++|++|++++|+.....+...... ....+.++.+|+.++. +
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999986433221111110 1235677888987752 3
Q ss_pred CCCCEEEEcccCCCCCCCc------CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~------~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.++|++|||||........ +++...+++|+.|+.++++++. +.+ .++|++||.+++..
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 184 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE----------- 184 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC-----------
Confidence 4799999999865432222 2346789999999999888764 444 38999999765531
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+....+.|+.+|++.+.+++.++.+. |+++++++||.|-++.
T Consensus 185 ----~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~ 229 (293)
T PRK05866 185 ----ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPM 229 (293)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcc
Confidence 11223679999999999999987664 8999999999886653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=148.79 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|++|||||+|+||.+++++|+++|++|++++|+....+...... ....++.++.+|+.++. ...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999988643222111111 01245678899998751 246
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc-----CC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----GA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+||||||....... .+.+...+++|+.++.++++++.+. +. ++|++||...+.....
T Consensus 90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~----------- 158 (259)
T PRK08213 90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP----------- 158 (259)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-----------
Confidence 8999999986432222 2245678899999999999987654 33 8999999765532110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|++.|.+++.++.+. |+++++++||.+-++.
T Consensus 159 -~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~ 203 (259)
T PRK08213 159 -EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKM 203 (259)
T ss_pred -cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcc
Confidence 11234689999999999999998763 7999999999887763
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=148.57 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=121.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-ccccccccCCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
++++|+++||||+|+||++++++|+++|++|+++++..... ...+.. ....+..+.+|+.+. .+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTA--LGRRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45688999999999999999999999999998876542111 011111 123567788898764 224
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||....... .+++...+++|+.++.++++++.+ .+ .++|++||...+..
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 151 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG------------- 151 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC-------------
Confidence 69999999996433222 235788899999999999988753 22 47999999876632
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ .|++++.++||.+-.+.
T Consensus 152 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~ 195 (253)
T PRK08993 152 ---GIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNN 195 (253)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcc
Confidence 112347999999999999999877 48999999999998763
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=180.76 Aligned_cols=189 Identities=21% Similarity=0.240 Sum_probs=133.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC----CeEEEEecCCCCccc--cccc---------ccCCCceEEEecccccc---
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKD--NLVH---------HFRNPRFELIRHDVVEP--- 176 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g----~~V~~i~r~~~~~~~--~~~~---------~~~~~~v~~~~~Dl~~~--- 176 (309)
..++|+||||+||+|++++++|++++ ++|+++.|....... .+.. .....++.++.+|+.++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35799999999999999999999987 689998885432211 1100 00113688888998654
Q ss_pred --------ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCC---------
Q 021681 177 --------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL--------- 238 (309)
Q Consensus 177 --------~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~--------- 238 (309)
+..++|+|||||+... +...+......|+.|+.+++++|.+.+. +++|+||.++|+...
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 2356999999997543 3345555566899999999999998876 799999999986421
Q ss_pred ---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC--CCCcHHHHHHH
Q 021681 239 ---EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL--DDGRVVSNFVA 307 (309)
Q Consensus 239 ---~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~--~~~~~i~~~i~ 307 (309)
...+.|..+.......+.+.|+.||+++|.++..+.. .|++++++|||+|||++... ....++..+++
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~ 1199 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLK 1199 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHH
Confidence 1123343222222333457799999999999998765 59999999999999996532 12445555543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=150.34 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=122.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc---cccccccCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK---DNLVHHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~---~~~~~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
...+|+|+||||+++||.+++.+|+++|..++.+.+..+..+ +++.+.....++.++.+|+++. .
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999888887655443 2233333333688899999876 4
Q ss_pred cCCCCEEEEcccCCCCCCCcC-----ChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYKY-----NPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+.++|++|||||... ..+.+ +....+++|+.|+..+.+++. +.+ .+||.+||...+
T Consensus 89 fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~------------- 154 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK------------- 154 (282)
T ss_pred cCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc-------------
Confidence 567999999999866 33322 356689999999999888864 444 599999998765
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcEE-EEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGAG---VEVR-IARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~g---i~~~-ivRp~~V~Gp 292 (309)
.+....+.|++||.+.+.+.+.+..+.. +.+. .+-||.|=..
T Consensus 155 ---~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 155 ---MPLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred ---cCCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 2333345899999999999999987752 2222 5788877443
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=148.46 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=121.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+|+|+||||+|+||.+++++|+++|++|+++.+......+...... ....+.++.+|+.+. .+..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999888654322211111111 134678889998875 12468
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc------CCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~------~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
|+||||||....... .+++...+++|+.++.++++++.+. +.++|++||.... .
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~----------------~ 145 (256)
T PRK12743 82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH----------------T 145 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc----------------C
Confidence 999999987543222 1356788999999999999887542 2489999996532 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|++++.++||.+.+|.
T Consensus 146 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~ 190 (256)
T PRK12743 146 PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPM 190 (256)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcc
Confidence 3344568999999999999998865 48999999999999874
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=147.94 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=120.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
+.+++|+++||||+|+||.+++++|+++|++|+++++...... ...+..+.+|+.++. +.
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3467889999999999999999999999999999987543321 235677888887761 24
Q ss_pred CCCEEEEcccCCCCCC-------------CcCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~ 241 (309)
.+|++|||||...... ..++++..+++|+.++..+++++.+. + .++|++||...+.
T Consensus 77 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 150 (266)
T PRK06171 77 RIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE------ 150 (266)
T ss_pred CCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC------
Confidence 6899999998643211 12346778999999999999988643 2 3799999976552
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCcee
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTY 290 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~ 290 (309)
+......|+.+|.+.+.+++.++.+ .|+++++++||.+.
T Consensus 151 ----------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 151 ----------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 1223468999999999999999876 48999999999885
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-18 Score=149.73 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+ +... ....+..+.+|+.+. .+..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE-LEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999876432221 1111 123567788888764 12468
Q ss_pred CEEEEcccCCCCC-CC---c-----CChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPV-HY---K-----YNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 182 D~Vih~A~~~~~~-~~---~-----~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
|++|||||..... .. . ++++..+++|+.++.++++++.+. +.++|++||...+.
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------------- 147 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------------- 147 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-------------
Confidence 9999999864211 11 1 246788999999999999998653 24788888865441
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+. .++++.+.||.+..|-
T Consensus 148 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 148 ---PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 22233579999999999999998875 3899999999998763
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=149.62 Aligned_cols=160 Identities=19% Similarity=0.096 Sum_probs=119.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++++++||||+|+||++++++|+++|++|++++|+.....+... .. ..+.++.+|+.++. +..+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA-EL--GLVVGGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-Hh--ccceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999999999998875433221111 11 14667888887651 2468
Q ss_pred CEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||........+ .+..++++|+.|+.++++.+. +.+. ++|++||...+. +
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 143 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI----------------P 143 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------------C
Confidence 99999999754333222 456789999999999887764 3443 899999976552 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+.+.++.+ .|+++++++||.+-++
T Consensus 144 ~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~ 186 (273)
T PRK07825 144 VPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTE 186 (273)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcch
Confidence 233467999999999888887655 4899999999998665
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=147.78 Aligned_cols=164 Identities=15% Similarity=-0.004 Sum_probs=120.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc-ccccc-CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~-~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++++|+||||+|+||++++++|+++|++|+++.+........ ..... ....+..+.+|+.++. +.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999988766532211111 11100 1124566778886651 34
Q ss_pred CCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
.+|+||||||........+ .+...+++|+.++.++++++.+. +.++|++||...|. +
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 147 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------P 147 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------C
Confidence 6899999998643332221 24577899999999999988754 24799999987762 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
..+.+.|+.+|++.|.+++.++.+. ++++.+++||.+.++.
T Consensus 148 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~ 190 (252)
T PRK06077 148 AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKL 190 (252)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChH
Confidence 4455789999999999999998775 7999999999998763
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=145.84 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=118.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------cCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--------~~~~D~Vi 185 (309)
.++|+||||||+|+||++++++|+++|++|+++.+......+.+... ..+..+..|+.+.. ...+|++|
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 46789999999999999999999999999988765322111111111 12456677876641 24589999
Q ss_pred EcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 186 HLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
||||....... .+++...+++|+.++.++++.+.+. +.++|++||..... .+..+...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------~~~~~~~~ 145 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR---------------MPVAGMAA 145 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc---------------CCCCCCcc
Confidence 99986432221 2356788999999999998776553 34899999965321 13334567
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 259 YDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
|+.+|++.+.+++.++.+ .|+++++++||.+..+.
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~ 183 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDA 183 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCc
Confidence 999999999999998776 47999999999998764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=145.86 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=122.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++|+|+||||+|+||++++++|+++|++|++++|+............ ...++.++.+|+.++. +..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 356799999999999999999999999999999886433221111110 1345778888887651 245
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|.|||+||....... .+++...++.|+.++.++++.+. +.+. ++|++||.....
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~---------------- 146 (246)
T PRK05653 83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT---------------- 146 (246)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc----------------
Confidence 7999999986443221 12356779999999999998884 3444 899999965431
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
...+...|+.+|.+.+.+++.++++ .+++++++|||.++||..
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~ 192 (246)
T PRK05653 147 GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMT 192 (246)
T ss_pred CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcch
Confidence 1223467999999999999998765 489999999999999864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=147.52 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=118.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~V 184 (309)
|+|+||||+|+||.+++++|+++|++|++++|+...... +.... ...+..+.+|+.+. .+.++|+|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE-LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 589999999999999999999999999999986432221 11111 23577788888765 12469999
Q ss_pred EEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||+||...... ..+++..++++|+.|+.++++.+. +.+. ++|++||...+ .+..
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------------~~~~ 142 (248)
T PRK10538 79 VNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS----------------WPYA 142 (248)
T ss_pred EECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC----------------CCCC
Confidence 99998642111 223467789999999877777654 3443 89999997644 1223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+.+.|+.+|.+.+.+++.++.+. ++++++++||.+.|+.
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~ 184 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE 184 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence 34689999999999999988663 7999999999998664
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=148.22 Aligned_cols=160 Identities=20% Similarity=0.107 Sum_probs=120.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-------------cCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------LLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-------------~~~~D 182 (309)
||++|||||+|+||++++++|+++|++|++++|+.....+ +........+.++.+|+.+.. ...+|
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAA-LAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4789999999999999999999999999999876443221 111112346788889987751 34689
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEecccc-ccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV-YGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~v-y~~~~~~~~~E~~~~~~~~ 252 (309)
+||||||......+. ++++.++++|+.++.++++++.+ .+ .++|++||... ++.
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 143 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ---------------- 143 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC----------------
Confidence 999999975433322 24677899999999999988743 33 48999999643 431
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+++.++.+ .++++++++||.+-.+.
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~ 186 (260)
T PRK08267 144 -PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAM 186 (260)
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcc
Confidence 12357999999999999998755 47999999999987653
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=145.93 Aligned_cols=164 Identities=15% Similarity=0.040 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++++++||||+|+||.+++++|+++|++|++++|+.....+...+.. ...++.++.+|+.++. +..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 356799999999999999999999999999999986543221111110 1236778888987662 246
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+|||+||....... .+++...+++|+.++.++++.+.+ .+ .++|++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 148 (239)
T PRK07666 85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK---------------- 148 (239)
T ss_pred ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc----------------
Confidence 9999999986543222 124567899999999999988753 33 3799999976542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~ 193 (239)
T PRK07666 149 GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDM 193 (239)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcc
Confidence 2223457999999999999888755 48999999999998874
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=145.86 Aligned_cols=163 Identities=18% Similarity=0.122 Sum_probs=121.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|++|||||+|+||++++++|+++|++|++++|+..+..+...+ .....++++.+|+.+. .+.++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-VPADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-HhhcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 4578999999999999999999999999999999865433222211 1223456677887664 13469
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+|||+|+....... .+.+.+.+++|+.++.++++++.+ .+. ++|++||...+..
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 147 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA---------------- 147 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC----------------
Confidence 999999986432221 123466788999999999988753 333 8999999887632
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.. .+++++.+|||.++++.
T Consensus 148 ~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~ 191 (239)
T PRK12828 148 GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPP 191 (239)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence 223467999999999999888764 48999999999999984
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=147.48 Aligned_cols=164 Identities=15% Similarity=0.047 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|+++||||+|+||.+++++|++.|++|++++|+.....+...+.. ...++.++.+|+.++ .+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999986443222111110 123567788888765 1246
Q ss_pred CCEEEEcccCCCCC-CC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||..... .. .+++...+++|+.++..+++++. +.+ .++|++||...+..
T Consensus 84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-------------- 149 (254)
T PRK07478 84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-------------- 149 (254)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc--------------
Confidence 99999999864321 11 13467889999999888876653 333 37999999765521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.||++.+.+++.++.+. |++++.++||.+-.+
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 193 (254)
T PRK07478 150 -GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTP 193 (254)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCc
Confidence 12234689999999999999998764 799999999999877
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=148.62 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|+++||||+|+||.+++++|+++|++|++++|+.....+...... ....+.++.+|++++. +.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999986433221111110 1245777888987762 246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH-----cC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+|||+||........ +++...+++|+.++.++++++.+ .+ .++|++||.....
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 152 (263)
T PRK07814 88 LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL--------------- 152 (263)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC---------------
Confidence 89999999864332222 34678899999999999999864 23 3799999964331
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+. +++++.++||.+..+.
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~ 196 (263)
T PRK07814 153 -AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSA 196 (263)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCch
Confidence 22334689999999999999988764 5899999999987653
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=146.66 Aligned_cols=163 Identities=18% Similarity=0.126 Sum_probs=122.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
..++|++|||||+|+||.+++++|+++|++|++++|+.... ..........+..+.+|+.++. +.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA--EVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999999998864321 1111122345667888887651 246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........ +++...+++|+.|+.++++++.+. + .++|++||...+.
T Consensus 90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 153 (255)
T PRK06841 90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV---------------- 153 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc----------------
Confidence 89999999865332221 245678999999999999987642 3 3899999975431
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ .|++++.++||.|..+.
T Consensus 154 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 198 (255)
T PRK06841 154 ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTEL 198 (255)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcc
Confidence 1122357999999999999999876 48999999999998774
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=147.46 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=120.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
+++||||||+|+||.+++++|++.|++|++++|+............ ....+.++.+|+.++. +.++|
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999986433221111110 1236778888987762 23689
Q ss_pred EEEEcccCCCCCCCcCC-----hhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKYN-----PVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||........+. +...+++|+.++.++++.+.+ .+.++|++||...+. +.
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 144 (263)
T PRK06181 81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT----------------GV 144 (263)
T ss_pred EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC----------------CC
Confidence 99999987544333222 567799999999999998853 234899999987663 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+..+
T Consensus 145 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~ 186 (263)
T PRK06181 145 PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATD 186 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccC
Confidence 23468999999999999887654 4899999999998776
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=148.65 Aligned_cols=157 Identities=15% Similarity=0.036 Sum_probs=117.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
+|+++||||+|+||++++++|+++|++|++++|+...... + ....+..+.+|+.++ ...++|+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEA-L----AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-H----HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 4789999999999999999999999999999876432211 1 112356677888764 1246899
Q ss_pred EEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
||||||....... .+++...+++|+.|+.++++++.+ ...++|++||...+. +...
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~ 139 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL----------------VTPF 139 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC----------------CCCC
Confidence 9999986433222 234677899999999999988743 224799999965432 1122
Q ss_pred CCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...|+.+|.+.+.+++.++.+ .|+++++++||.|.++-
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 367999999999999888765 58999999999997763
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=144.31 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=120.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~ 187 (309)
.++|+++||||+|+||+++++.|+++|++|+++++..... ....+..+.+|+.++ .+..+|+||||
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------cCCcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 5678999999999999999999999999999998753221 123567788888765 23569999999
Q ss_pred ccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 188 A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
||..... . ..+++...+++|+.++.++++++.. .+ .++|++||...+. +.....
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~ 138 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV----------------AGGGGA 138 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCCc
Confidence 9854211 1 1224677899999999999998753 22 3799999976542 112235
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.|+.+|.+.+.+++.++.+. |+++++++||.+.+|..
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~ 178 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMT 178 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccc
Confidence 79999999999999988764 89999999999988753
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=147.67 Aligned_cols=165 Identities=11% Similarity=0.089 Sum_probs=125.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~------------~ 177 (309)
..++|+++||||+|+||++++++|+++|++|++++|+.....+...+ .....++..+.+|+.++ .
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999864332211111 11234677888998765 2
Q ss_pred cCCCCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+..+|+||||||...... ..+++...+++|+.++.++++++.+ .+ .++|++||...+.
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~------------- 152 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT------------- 152 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC-------------
Confidence 356999999998642211 2235678899999999999888743 33 3899999987653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+....+.|+.+|.+.+.+++.++.+ .|++++.++||.+.+|.
T Consensus 153 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~ 197 (257)
T PRK09242 153 ---HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPL 197 (257)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcc
Confidence 2233467999999999999998765 48999999999998875
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=147.72 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=120.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++|... ..+...... ...++..+.+|+.++ .+..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999988642 111111111 124567888999775 1346
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........+ .+++.+++|+.++.++++++.+ .+ .++|++||..... .
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------~ 147 (263)
T PRK08226 83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM---------------V 147 (263)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------c
Confidence 899999999754333222 3566799999999999998754 23 3899999865311 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+. +++++.++||.+.+|
T Consensus 148 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~ 191 (263)
T PRK08226 148 ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTP 191 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCH
Confidence 11223579999999999999998764 799999999999887
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=147.38 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=119.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEecccccc-----c-------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP-----I-------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~-----~-------~ 178 (309)
.++|+|+||||+|+||++++++|+++|++|++++|......+.... ......+.++.+|+.++ . +
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999998764432211111 11233466778898776 1 2
Q ss_pred CCCCEEEEcccCCCCC---CC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV---HY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~---~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..+|+|||||+..... .+ .+.+...+++|+.++..+++++.+ .+. ++|++||...+...... ..+.
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~~~- 159 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE-IYEG- 159 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch-hccc-
Confidence 3489999999743211 11 123567789999998887776543 343 89999997654322111 1111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ .++++++++||.++++
T Consensus 160 ----~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~ 204 (256)
T PRK09186 160 ----TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDN 204 (256)
T ss_pred ----cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCC
Confidence 12222347999999999999988876 4899999999998875
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=145.12 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=121.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++++|+||||+|+||++++++|+++|++|++++|+................+..+.+|+.+.. +..+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999999999999865332221111111146778888887651 2369
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---C-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---G-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|+|||+||....... .+++...+++|+.++.++++++.+. + .++|++||...+. +.
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~ 147 (237)
T PRK07326 84 DVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------FF 147 (237)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------CC
Confidence 999999986543222 2235678999999999998887542 2 3799999976542 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+++.++.+ .|++++++|||.+.++.
T Consensus 148 ~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~ 190 (237)
T PRK07326 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHF 190 (237)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcc
Confidence 33467999999999999988644 48999999999998764
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=145.79 Aligned_cols=164 Identities=21% Similarity=0.163 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++++++||||+|+||++++++|+++|++|+++.+......+...+.+ ...++.++.+|+.++ .+.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999887764332211111111 134677888998765 124
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
++|+||||||....... .+++..++++|+.++.++++++.+. +.++|++||...+. +
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL----------------P 146 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------C
Confidence 69999999986432221 2246678999999999999988654 23899999876542 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....+.|+.+|.+.+.+++.++.+ .++++++++||.+-++.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~ 190 (245)
T PRK12937 147 LPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATEL 190 (245)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCch
Confidence 233467999999999999998765 37999999999887763
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=147.28 Aligned_cols=164 Identities=12% Similarity=0.024 Sum_probs=122.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..++|+++||||+|+||.+++++|+++|++|+++++......+.....- ...++..+.+|++++ .+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3567899999999999999999999999999998876433222111110 123577888999776 124
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccc-cccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE-VYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~-vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||....... .+++...+++|+.|+..+++.+.+ .+ .++|++||.. .++
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 152 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG-------------- 152 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC--------------
Confidence 58999999997543322 234677899999999988887653 33 4899999964 332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|.+.+.+++.++.+. |++++.++||.+.+|.
T Consensus 153 ---~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~ 196 (265)
T PRK07097 153 ---RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQ 196 (265)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccc
Confidence 1234679999999999999998774 8999999999999874
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=139.08 Aligned_cols=145 Identities=31% Similarity=0.442 Sum_probs=114.7
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCCCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 193 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~~~ 193 (309)
|+|+||||++|+.++++|+++|++|+++.|+..+... ...++++.+|+.++ .+.++|.|||+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7999999999999999999999999999987553332 56889999999776 56789999999964221
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (309)
....+.++++++++.++ ++|++|+.++|.........+. ......|...|..+|.+++
T Consensus 74 -------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~~~~- 132 (183)
T PF13460_consen 74 -------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED-------KPIFPEYARDKREAEEALR- 132 (183)
T ss_dssp -------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT-------CGGGHHHHHHHHHHHHHHH-
T ss_pred -------------cccccccccccccccccccceeeeccccCCCCCccccccc-------ccchhhhHHHHHHHHHHHH-
Confidence 27788899999999998 8999999999975433211111 0111568888988887774
Q ss_pred HHHhcCCcEEEEEeCceeCCCC
Q 021681 273 YHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 273 ~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+.+++++++||+.+||+..
T Consensus 133 ---~~~~~~~ivrp~~~~~~~~ 151 (183)
T PF13460_consen 133 ---ESGLNWTIVRPGWIYGNPS 151 (183)
T ss_dssp ---HSTSEEEEEEESEEEBTTS
T ss_pred ---hcCCCEEEEECcEeEeCCC
Confidence 4589999999999999864
|
... |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=147.75 Aligned_cols=166 Identities=15% Similarity=0.031 Sum_probs=121.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|++|||||+|+||.+++++|+++|++|++++|+....+....+.. ...++..+.+|+.++ .+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 568899999999999999999999999999999886433221111110 123567788898776 1347
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||....... .++++..+++|+.++..+++++.+ .+ .++|++||......
T Consensus 87 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------- 152 (253)
T PRK05867 87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII-------------- 152 (253)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC--------------
Confidence 9999999987543322 224677889999999999998743 22 36899988653210
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
........|+.+|++.+.+++.++.+. |++++.++||.|-.|.
T Consensus 153 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~ 198 (253)
T PRK05867 153 NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTEL 198 (253)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcc
Confidence 011123579999999999999998764 8999999999998774
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=146.58 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=117.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---ccc--CCCceEEEecccccc------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHF--RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~--~~~~v~~~~~Dl~~~------------ 176 (309)
+++|+++||||+|+||.+++++|+++|++|+++.+......+... +.+ ...++..+.+|+.++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999997777654322221111 111 124677888998766
Q ss_pred ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+..+|++|||||....... .+++...+++|+.++..+++++.+. +.++++++|+.+..
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-------------- 151 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-------------- 151 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc--------------
Confidence 12468999999996432222 1246778999999999999998653 23666664332221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.|.+++.++.+. |++++.++||.+.++.
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~ 196 (257)
T PRK12744 152 --FTPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPF 196 (257)
T ss_pred --cCCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccch
Confidence 11123579999999999999998774 7999999999997763
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=145.76 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=121.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
++|+++||||+|+||..++++|+++|++|++++|+.....+..... .....+.++.+|+++.. +..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999999999998654322111110 01246778889997762 2359
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||....... .+++...+++|+.++.++++.+.+ .+ .++|++||...+. +
T Consensus 85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 148 (241)
T PRK07454 85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN----------------A 148 (241)
T ss_pred CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc----------------C
Confidence 999999986433221 124677899999999998887633 33 3899999987763 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .|++++++|||.+-+|.
T Consensus 149 ~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~ 192 (241)
T PRK07454 149 FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPL 192 (241)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCc
Confidence 233467999999999999888754 48999999999998774
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=146.02 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=119.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc---------cCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI---------LLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~---------~~~~D~V 184 (309)
||+|+||||+|+||.+++++|+++|++|++++|+.........+. ....++.++.+|+.++. ...+|++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 478999999999999999999999999999998754332211111 12346788899998762 2347999
Q ss_pred EEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
||+||........ +++...+++|+.++.++++++.+ .+ .+++++||..... +...
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~ 144 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR----------------GRAS 144 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC----------------CCCC
Confidence 9999864332222 23456789999999999988754 23 3799999964321 1112
Q ss_pred CCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
...|+.+|++.+.+++.++.+ .|++++.++||.++++
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~ 184 (243)
T PRK07102 145 NYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTP 184 (243)
T ss_pred CcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCh
Confidence 356999999999999998754 4899999999999987
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=146.16 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc--------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP--------------I 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~--------------~ 177 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.........+. .....+..+..|+.+. .
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998754322111111 0122344556665431 1
Q ss_pred c-CCCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCC
Q 021681 178 L-LEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~-~~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+ ..+|+||||||...... . .+++...+++|+.|+.++++++.+ .+ .+++++||....
T Consensus 84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~------------ 151 (239)
T PRK08703 84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE------------ 151 (239)
T ss_pred hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc------------
Confidence 2 46899999998642211 1 124566899999999999888744 33 489999986533
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA----GVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~----gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|++.+.+++.++.+. ++++++++||.|++|.
T Consensus 152 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~ 198 (239)
T PRK08703 152 ----TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQ 198 (239)
T ss_pred ----cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcc
Confidence 222334679999999999999998774 5999999999999995
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=146.03 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=122.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|+|+||||+|+||++++++|+++|++|+++++............. ...++.++.+|+++.. +.+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999999999998875432221111110 1235677888887661 246
Q ss_pred CCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||......++ +++...+++|+.++.++++++.. .+ .++|++||.... .+
T Consensus 89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------------~~ 152 (255)
T PRK06113 89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE----------------NK 152 (255)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc----------------CC
Confidence 89999999965432222 34566799999999999999853 33 389999997643 12
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+ .|++++++.||.+-.+.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~ 196 (255)
T PRK06113 153 NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 196 (255)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccc
Confidence 233467999999999999998865 47999999999987764
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=147.65 Aligned_cols=162 Identities=18% Similarity=0.142 Sum_probs=120.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|+++||||+|+||++++++|+++|++|++++|+...... +.... ..++..+.+|+.+. .+..+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLAS-LRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999886432221 11111 23466788888765 12469
Q ss_pred CEEEEcccCCCCC-CC---c-C----ChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPV-HY---K-Y----NPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 182 D~Vih~A~~~~~~-~~---~-~----~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
|++|||||+.... .. . + .++..+++|+.++..+++++.+ .+.++|++||...+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 148 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------------- 148 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC-------------
Confidence 9999999964321 11 1 1 2567789999999999888753 334799999987652
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+. +++++.+.||.|..+-
T Consensus 149 ---~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~ 192 (263)
T PRK06200 149 ---PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDL 192 (263)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCC
Confidence 22233579999999999999998764 5999999999997763
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-18 Score=159.72 Aligned_cols=183 Identities=22% Similarity=0.191 Sum_probs=133.5
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHCCCe---EEEEecCCCCcccc--ccccc--------------CCCceEEEe
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDE---VIVIDNFFTGRKDN--LVHHF--------------RNPRFELIR 170 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~---V~~i~r~~~~~~~~--~~~~~--------------~~~~v~~~~ 170 (309)
....+++|+|||||||||+|+.++++|++...+ ++++.|...+.... +.... ...++..+.
T Consensus 6 i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~ 85 (467)
T KOG1221|consen 6 IVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIA 85 (467)
T ss_pred HHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecc
Confidence 345789999999999999999999999998754 45555543332111 11000 124666778
Q ss_pred cccccc-----------ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCC
Q 021681 171 HDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDP 237 (309)
Q Consensus 171 ~Dl~~~-----------~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~ 237 (309)
+|+.++ ...++|+|||+| +..++.+..+....+|+.||++++++|++... -++++||+.+. +
T Consensus 86 GDi~~~~LGis~~D~~~l~~eV~ivih~A---AtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n--~ 160 (467)
T KOG1221|consen 86 GDISEPDLGISESDLRTLADEVNIVIHSA---ATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN--C 160 (467)
T ss_pred ccccCcccCCChHHHHHHHhcCCEEEEee---eeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee--c
Confidence 888766 345799999999 57788888999999999999999999999875 69999998776 3
Q ss_pred CCCCCCCCCCCCCCC--------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeC
Q 021681 238 LEHPQKETYWGNVNP--------------------------IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~--------------------------~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
....+.|..++.... .+..+.|..||+.+|+++...+ .+++++|+||+.|..
T Consensus 161 ~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~s 238 (467)
T KOG1221|consen 161 NVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITS 238 (467)
T ss_pred ccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceec
Confidence 333344433321110 1124789999999999998854 579999999999998
Q ss_pred CCCCCCCC
Q 021681 292 PRMCLDDG 299 (309)
Q Consensus 292 p~~~~~~~ 299 (309)
....+..|
T Consensus 239 t~~EP~pG 246 (467)
T KOG1221|consen 239 TYKEPFPG 246 (467)
T ss_pred cccCCCCC
Confidence 87655433
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=146.09 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=120.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.+++|+++||||+|+||.+++++|+++|++|++++++.........+.. ....+..+.+|+.+. .+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999999986433221111111 123466778888665 124
Q ss_pred CCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||..... . ..+++...+++|+.++..+++++. +.+ .+++++||...+.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 150 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------------- 150 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC--------------
Confidence 589999999853211 1 122456789999999998887763 333 3799999865431
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+.+.|+.+|++.+.+++.++.+. |++++.+.||.|-.+.
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~ 195 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKF 195 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcc
Confidence 22334679999999999999998764 8999999999997653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=144.31 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=120.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc---ccccCCCceEEEeccccccc------------cCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---VHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~---~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+|+++||||+|+||++++++|+++|++|++++|+.....+.. ........+.++.+|++++. +.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999988643322111 11112346788899998762 346
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||+....... +.+...+++|+.++.++++.+. +.+. ++|++||...+..
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 146 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG--------------- 146 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC---------------
Confidence 99999999875433221 2346778999999999988864 3343 8999999654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|++.+.+++.++.+ .+++++.++||.+.++.
T Consensus 147 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~ 191 (248)
T PRK08251 147 LPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEM 191 (248)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchh
Confidence 1112367999999999999888765 37999999999998763
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=144.88 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=123.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|+.++ .+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999998643222111111 0123577888898776 124
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|+||||||........ +++...+++|+.++.++++.+.+ .+. ++|++||...+.
T Consensus 88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------------- 152 (256)
T PRK06124 88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV--------------- 152 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc---------------
Confidence 589999999865432222 24667899999999999977654 343 899999976442
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ .+++++.++||.+.++.
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~ 197 (256)
T PRK06124 153 -ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATET 197 (256)
T ss_pred -CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcc
Confidence 1222367999999999999988766 38999999999999985
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=147.21 Aligned_cols=161 Identities=17% Similarity=0.052 Sum_probs=120.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~D~ 183 (309)
|+|+||||+|+||++++++|+++|++|+++++......+...... ....+.++.+|+.++. +..+|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 589999999999999999999999999999876443222111110 1345677888987651 246999
Q ss_pred EEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||||||........+ +++..+++|+.++.++++.+ ++.+. ++|++||...+. +..
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~~ 144 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM----------------QGP 144 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------------CCC
Confidence 999999754433322 45667899999988877764 44554 899999986652 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|++.+.+.+.++.+ .|+++++++||.+.++.
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 186 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNL 186 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCc
Confidence 4468999999999999998876 38999999999998875
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=144.25 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=115.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEe-cCCCCccccccccc-CCCceEEEeccccccc------------cCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++++||||+|+||++++++|+++|++|+++. ++.....+...+.. ....+..+.+|+.++. ...+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 36899999999999999999999999998754 33221111111110 1235677889987761 2458
Q ss_pred CEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 182 D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
|+|||+||...... . .+++...+++|+.++..+++++.+. +.++|++||...+...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 99999998643222 1 1235678999999999888776432 2369999997554211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+ .....|+.+|+..+.+++.++.+ .+++++++|||.+|||..
T Consensus 150 ---~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~ 194 (247)
T PRK09730 150 ---P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMH 194 (247)
T ss_pred ---C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCccc
Confidence 1 11235999999999999988765 489999999999999964
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=143.51 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=117.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc-CCCceEEEecccccc------------ccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++|+++||||+|+||++++++|+++|++|++..+...... +...+.. ....+..+.+|+.+. .+..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999888643221111 1111110 123566778888765 1246
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+++...+++|+.++.++++.+. +.+. ++|++||.....
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 145 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---------------- 145 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC----------------
Confidence 9999999986543221 23567889999999888777654 3443 899999965331
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|.+.+.+++.++.+ .++++++++||.+.+|..
T Consensus 146 ~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~ 191 (246)
T PRK12938 146 GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV 191 (246)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchh
Confidence 2223467999999999999888765 489999999999998853
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=145.35 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=115.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----ccC-CCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----ILL-EVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-----~~~-~~D~Vih~ 187 (309)
+|+||||||+|+||++++++|++.|++|++++|+.....+ +... .....+.++.+|+.++ .+. ++|+||||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTA-LRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 5689999999999999999999999999999886432211 1110 0123577888888776 223 79999999
Q ss_pred ccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 188 ACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
||........ +++...+++|+.++.++++.+ .+.+. ++|++||...+.. ......
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~----------------~~~~~~ 144 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT----------------GPFTGA 144 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC----------------CCCcch
Confidence 9865432222 235677899999988877654 34443 8999999754321 122367
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeC
Q 021681 259 YDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYG 291 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~G 291 (309)
|+.+|.+.|.+++.++.+ .|++++++|||.+..
T Consensus 145 Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t 180 (257)
T PRK09291 145 YCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLT 180 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence 999999999999887765 589999999998744
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=145.43 Aligned_cols=165 Identities=15% Similarity=0.089 Sum_probs=122.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc---ccccCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---VHHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~---~~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
..++|+++||||+|+||.+++++|+++|++|++++|+.....+.. .......++..+.+|+.++ .
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999998654322211 1111123567788888776 2
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+..+|++|||||......+. +++...+++|+.+...+++.+. +.+ .++|++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ------------- 151 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC-------------
Confidence 34689999999964332222 2567889999999888877653 333 4899999976542
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|..|.
T Consensus 152 ---~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~ 196 (265)
T PRK07062 152 ---PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQ 196 (265)
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccch
Confidence 2222367999999999999988776 48999999999997763
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=145.43 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=119.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+++||||+|+||.+++++|+++|++|+++.+..........+.+ ....+..+.+|+.+.. +.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 84 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG 84 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 578899999999999999999999999999887764322211111111 1235667888887761 24
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcC--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||......+. ++++..+++|+.++..+++.+ .+.+ .++|++||...+
T Consensus 85 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~--------------- 149 (261)
T PRK08936 85 TLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ--------------- 149 (261)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc---------------
Confidence 589999999965433322 246678999999887766554 4443 389999996543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|++.+.+.+.++.+. |++++.++||.+.+|.
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 195 (261)
T PRK08936 150 -IPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPI 195 (261)
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCc
Confidence 233445689999999999998887654 8999999999998874
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=143.66 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=122.0
Q ss_pred CCCCeEEEEcCCc-hhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEecccccc------------c
Q 021681 114 RRRLRIVVTGGAG-FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 114 ~~~k~VlITGatG-~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
.++|+++||||+| .||+++++.|+++|++|++++++......... ......++..+.+|+.++ .
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999997 79999999999999999998876443222111 111224677888998765 1
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|++|||||........ +++...+++|+.++..+++.+.+ .+ .+++++||...+
T Consensus 95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~------------- 161 (262)
T PRK07831 95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW------------- 161 (262)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc-------------
Confidence 24689999999964332222 24677899999999998888643 22 378888886543
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ +|++++.++||.+..|.
T Consensus 162 ---~~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~ 207 (262)
T PRK07831 162 ---RAQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPF 207 (262)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcc
Confidence 12234467999999999999999876 58999999999999885
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=144.57 Aligned_cols=164 Identities=17% Similarity=0.093 Sum_probs=122.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|+++||||+|+||.+++++|+++|++|++++|+........... ....++..+.+|+.+. .+..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999998644322111111 0124577888888765 1235
Q ss_pred CCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+||||||...... ..+++...+++|+.++..+++++. +.+ .++|++||...+.
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~--------------- 149 (253)
T PRK06172 85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG--------------- 149 (253)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc---------------
Confidence 899999998643222 123567789999999988877643 333 3899999987663
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.+.||.|-.+.
T Consensus 150 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~ 194 (253)
T PRK06172 150 -AAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDM 194 (253)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChh
Confidence 22334689999999999999998764 7999999999997764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=162.00 Aligned_cols=147 Identities=26% Similarity=0.357 Sum_probs=111.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc----cCCCCEEEEcccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----LLEVDQIYHLACPAS 192 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~----~~~~D~Vih~A~~~~ 192 (309)
|+||||||+||||++|+++|+++|++|+++++..... ....++++.+|+.++. +.++|+|||+|+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 5899999999999999999999999999999753211 1245788889988763 467999999997521
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (309)
.. ...+|+.|+.|++++|++.++++|++||. +|.+ ..|. .+|.++..
T Consensus 73 -----~~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~-------------------~~~~----~aE~ll~~ 119 (699)
T PRK12320 73 -----SA---PGGVGITGLAHVANAAARAGARLLFVSQA--AGRP-------------------ELYR----QAETLVST 119 (699)
T ss_pred -----cc---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCC-------------------cccc----HHHHHHHh
Confidence 11 12589999999999999999999999986 3321 0121 35665543
Q ss_pred HHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 273 YHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 273 ~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
++++++++|++++|||+......++++.++++
T Consensus 120 ----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~ 151 (699)
T PRK12320 120 ----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRS 151 (699)
T ss_pred ----cCCCEEEEeCceecCCCCcccHhHHHHHHHHH
Confidence 46899999999999998754446778887753
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=140.44 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+++||||+|+||+++++.|+++|++|+++.+............+ ....+..+.+|+.+.. +.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999888775432211111111 2346777888887752 23
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccc-cccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSE-VYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~-vy~~~~~~~~~E~~~~~ 249 (309)
++|.|||+||........ +.+...+.+|+.++.++++++.+. +. +++++||.. +++.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------------- 149 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC-------------
Confidence 689999999865433222 245677889999999999988653 33 799999964 3432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ .++++++++||.+.++.
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~ 192 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDM 192 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcc
Confidence 12367999999999999887754 48999999999886653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=145.48 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=120.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..++|+++||||+|+||.+++++|+++|++|++++|............. ....+.++.+|++++. +.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999999986443221111110 1234567788887651 24
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
.+|++|||||....... .+++...+++|+.|+.++++++.+ .+.+++++||...+.
T Consensus 86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~---------------- 149 (264)
T PRK07576 86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV---------------- 149 (264)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------------
Confidence 58999999975322221 224567889999999999988754 334899999976541
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ .|++++.++||.+.+.
T Consensus 150 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t 193 (264)
T PRK07576 150 PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGT 193 (264)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCc
Confidence 2223467999999999999998766 4799999999998753
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=143.80 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=116.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCC-cccccccc--cCCCceEEEeccccccc-----c------C
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTG-RKDNLVHH--FRNPRFELIRHDVVEPI-----L------L 179 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~-~~~~~~~~--~~~~~v~~~~~Dl~~~~-----~------~ 179 (309)
++|+|+||||+|+||++++++|+++| ++|++++|+... ..+...+. ....++.++.+|+.++. + .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 46799999999999999999999995 899999987654 22111111 12236788889987652 1 3
Q ss_pred CCCEEEEcccCCCCCC-CcCCh---hHHHHHHHHHHHHH----HHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-YKYNP---VKTIKTNVMGTLNM----LGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~~~~~---~~~~~~Nv~gt~~l----l~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||+|...... ...+. .+.+++|+.++..+ ++.+++.+. ++|++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~--------------- 151 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER--------------- 151 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC---------------
Confidence 6999999998653321 11122 24689999998875 445555554 899999976431
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.||++.+.+.+.++.+ +++++++++||.+..+
T Consensus 152 -~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 152 -VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 1122356999999999888887654 5899999999999886
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=144.12 Aligned_cols=161 Identities=12% Similarity=0.044 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---c---cccc--CCCceEEEeccccccc--------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---L---VHHF--RNPRFELIRHDVVEPI-------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~---~~~~--~~~~v~~~~~Dl~~~~-------- 177 (309)
.++|+++||||+|+||++++++|+++|++|++++|........ + ...+ ...++..+.+|++++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999865432110 0 0000 1235777888987761
Q ss_pred ----cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCC
Q 021681 178 ----LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 178 ----~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E 244 (309)
+..+|+||||||........ +++...+++|+.++.++++++.+. +.+++++||......
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~-------- 155 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP-------- 155 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc--------
Confidence 23699999999975433322 245778999999999999998642 247888888542210
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCc
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFN 288 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~ 288 (309)
....+...|+.+|++.|.+++.++.+. +++++.+.||.
T Consensus 156 ------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~ 196 (273)
T PRK08278 156 ------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRT 196 (273)
T ss_pred ------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Confidence 111345789999999999999998764 89999999984
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=142.24 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=116.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
+|++|||||+|+||++++++|+++|++|++++|+.....+.+. ...+..+.+|+.++ .+..+|+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 77 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR----QAGAQCIQADFSTNAGIMAFIDELKQHTDGLRA 77 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH----HcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccE
Confidence 5799999999999999999999999999999986543222221 12356778888765 1345999
Q ss_pred EEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC---CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|||||....... .++++..+++|+.++..+++.+.+ .+ .++|++||..... +
T Consensus 78 lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~----------------~ 141 (236)
T PRK06483 78 IIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK----------------G 141 (236)
T ss_pred EEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------------C
Confidence 9999986433221 235778899999999988777644 22 3799998865331 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYG 291 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~G 291 (309)
......|+.+|++.+.+++.++.+. +++++.|+||.+..
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~ 182 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILF 182 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceec
Confidence 2234679999999999999998875 59999999999854
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=142.67 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++++|+||||+|+||+++++.|++.|++|++++|+................+..+.+|+.++ .+..+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999999999999999986443221111111123577888998765 13457
Q ss_pred CEEEEcccCCCCCCC--cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 182 D~Vih~A~~~~~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
|.+||+++....... .+++...+++|+.++.++++.+.+. +.++|++||..... .+..+.
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------~~~~~~ 147 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY---------------KASPDQ 147 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc---------------cCCCCc
Confidence 999999975322111 1245667899999999988887653 34799999865321 122234
Q ss_pred CHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..|+.+|.+.+.+++.++.+. +++++++|||+++++.
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~ 187 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF 187 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence 579999999999999888664 8999999999999973
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=143.87 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----------cCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LLEVD 182 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----------~~~~D 182 (309)
.++++++||||+|+||.+++++|+++|++|++++|+.....+...+.....++.++.+|+.++. +..+|
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 4578999999999999999999999999999999864332221111111346778888987762 24689
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||........ +.+..++++|+.|+.++++.+.+ .+ .++|++||...+. +.
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 146 (263)
T PRK09072 83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI----------------GY 146 (263)
T ss_pred EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------------CC
Confidence 999999865332222 24567889999999999998754 22 3788888864331 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.....|+.+|.+.+.+++.++.+ .+++++.+.||.+.++
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~ 188 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA 188 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence 12367999999999999988866 4799999999988765
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=139.92 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=116.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c------CCCCE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L------LEVDQ 183 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~------~~~D~ 183 (309)
.+|+++||||+|+||++++++|+++|++|++++|..... . ..+++..|+.+.. + .++|+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~---~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD---F-------PGELFACDLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc---c-------CceEEEeeCCCHHHHHHHHHHHHHhCCCcE
Confidence 357999999999999999999999999999999864331 0 1145677776651 1 25899
Q ss_pred EEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||||||......+ .+++...+++|+.++.++++++. +.+. ++|++||...|+..
T Consensus 72 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------- 134 (234)
T PRK07577 72 IVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL----------------- 134 (234)
T ss_pred EEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-----------------
Confidence 9999997544332 23466789999999998877764 3443 89999998766421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 135 ~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~ 176 (234)
T PRK07577 135 DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETEL 176 (234)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcc
Confidence 2357999999999999988765 48999999999998874
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=143.69 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=119.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
+|+++||||+|+||+++++.|+++|++|++++|+.....+...... ....+.++.+|++++ .+..+|
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 4799999999999999999999999999999886432221111110 124677888998775 134689
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+||||||....... .+++...+++|+.|+.++++++.+ .+ .++|++||...+. +
T Consensus 81 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~ 144 (252)
T PRK07677 81 ALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD----------------A 144 (252)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc----------------C
Confidence 99999985332221 224678899999999999999843 22 3799999875431 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|.+.+.+++.++.+ +|++++.++||.+.++
T Consensus 145 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~ 188 (252)
T PRK07677 145 GPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERT 188 (252)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccc
Confidence 122357999999999999998766 3899999999999864
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=142.01 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=117.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++++++||||+|+||+++++.|+++|+.|++.++.......... .. ...+.++.+|+.+. .+.++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAA-EL-GERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-Hh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999999988887765332221111 11 23567788888765 13469
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEecccc-ccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV-YGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~v-y~~~~~~~~~E~~~~~~~ 251 (309)
|+||||||....... .+++...+++|+.++.++++++.+ .+ .++|++||... ++.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 146 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN--------------- 146 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC---------------
Confidence 999999986433221 235677899999999999888643 23 38999999644 432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ .++++++++||.+..+.
T Consensus 147 --~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~ 189 (245)
T PRK12936 147 --PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAM 189 (245)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCch
Confidence 12256999999999998888765 48999999999887653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=142.46 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|+++||||+|+||++++++|+++|++|+++++............ ....++.++.+|+.++. +.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999987543222111111 01246788889987762 246
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+.+...+++|+.++.++++++.+. + .++|++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 148 (250)
T PRK12939 85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW---------------- 148 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc----------------
Confidence 9999999986443221 1245677899999999999887542 2 3899999976542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ .+++++.++||.+.++..
T Consensus 149 ~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~ 194 (250)
T PRK12939 149 GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEAT 194 (250)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccc
Confidence 2223357999999999999988765 489999999999987753
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-17 Score=142.98 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=121.0
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCc--------ccc--ccccc--CCCceEEEeccccccc--
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGR--------KDN--LVHHF--RNPRFELIRHDVVEPI-- 177 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~--------~~~--~~~~~--~~~~v~~~~~Dl~~~~-- 177 (309)
.++|+||||||+| +||.+++++|+++|++|++++|..... .+. +.... ....+..+.+|+.++.
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 4678999999995 799999999999999999998762110 000 11111 1235778899987751
Q ss_pred ----------cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCC
Q 021681 178 ----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPL 238 (309)
Q Consensus 178 ----------~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~ 238 (309)
+..+|+||||||........ ++++..+++|+.++..+++++.+. + .++|++||...+.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--- 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC---
Confidence 24689999999864332222 245677999999999999988543 2 3899999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .+++++.++||.+..+.
T Consensus 160 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~ 204 (256)
T PRK12748 160 -------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGW 204 (256)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCC
Confidence 2223467999999999999998766 48999999999987763
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=149.68 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++|+|+||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|+.++. +..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999986543322111110 1235667788887751 256
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+.+ ++...+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~---------------- 148 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA---------------- 148 (330)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC----------------
Confidence 999999999754433332 456789999999999888764 333 3899999976552
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ .+++++.+.||.+.+|.
T Consensus 149 ~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~ 194 (330)
T PRK06139 149 AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPG 194 (330)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcc
Confidence 2223467999999999888888765 37999999999999885
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=139.91 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=119.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc------------cCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
|+++||||+|+||++++++|+++|++|++++++........... ....++.++.+|+.++. +..+|
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 58999999999999999999999999999988643111111111 11245788899998751 24599
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
++||+||....... .+.+..++++|+.++.++++.+ ++.+. ++|++||...+.. .
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~----------------~ 146 (245)
T PRK12824 83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG----------------Q 146 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC----------------C
Confidence 99999986533222 2346778999999999986654 44443 8999999776532 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ .++++++++||.+.+|.
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~ 189 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPM 189 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcc
Confidence 22357999999999999988764 48999999999998874
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=144.51 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=121.7
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++|+++||||+ ++||.+++++|+++|++|++.+|+. ...+...+. ....+..+.+|++++ .+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL-VDEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999 7999999999999999999998762 111112211 223567788999776 235
Q ss_pred CCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+|++|||||.... .. ..++++..+++|+.++..+++++.+. +.++|++||....
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-------------- 148 (252)
T PRK06079 83 KIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE-------------- 148 (252)
T ss_pred CCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--------------
Confidence 69999999996532 11 12346788999999999999887653 3489999986543
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|++.+.+++.++.+ .|++++.|.||.|-.+-
T Consensus 149 --~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~ 194 (252)
T PRK06079 149 --RAIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLA 194 (252)
T ss_pred --ccCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccc
Confidence 12223467999999999999999876 48999999999997763
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=143.35 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=115.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+|+|+||||+|+||+.+++.|+++|++|+++.+......+...... ...++..+.+|+.+.. +..+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 5699999999999999999999999998876543221111111111 1235778888887651 2469
Q ss_pred CEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEecccc-ccCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEV-YGDPLEHPQKETYW 247 (309)
Q Consensus 182 D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~v-y~~~~~~~~~E~~~ 247 (309)
|+||||||...... . .+++...+++|+.++.++++.+.+. +.++|++||... ++..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------- 151 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP---------- 151 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC----------
Confidence 99999998653322 1 1235677999999999987654332 125999999654 3211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+. |+++++++||.+..|.
T Consensus 152 ------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~ 194 (248)
T PRK06947 152 ------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEI 194 (248)
T ss_pred ------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccc
Confidence 112469999999999999988764 8999999999999874
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=142.17 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=118.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~ 183 (309)
+|+++||||+|+||++++++|+++|++|++++|+......... .+....+..+.+|+.+.. +.++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD-ALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5689999999999999999999999999999986443222111 112346778888887661 235899
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||+||........ +.+...+.+|+.++.++++++.. .+. ++|++||...+.. .
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------------~ 143 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-----------------L 143 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------------C
Confidence 99999864432222 23456678999999999988743 333 7999999643311 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|++.+.+++.++.+. |+++++++||.++++.
T Consensus 144 ~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~ 185 (257)
T PRK07074 144 GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQA 185 (257)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcch
Confidence 12369999999999999998664 7999999999999985
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-17 Score=149.15 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=120.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++++|+||||+|+||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++ .+..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 457899999999999999999999999999999986433222111110 124577788898776 1346
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .++++..+++|+.|+.++++.+ ++.+ .++|++||...|..
T Consensus 86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~--------------- 150 (334)
T PRK07109 86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS--------------- 150 (334)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC---------------
Confidence 9999999986433222 1245778999998888766655 3443 38999999887632
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .++++++++||.+.+|.
T Consensus 151 -~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~ 196 (334)
T PRK07109 151 -IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQ 196 (334)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCch
Confidence 223467999999999999888755 36999999999998773
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=140.66 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=119.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
.++++++||||+|+||..+++.|+++|++|+++++............. ...++..+.+|+.++. ...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999876432222111110 1346777888887641 245
Q ss_pred CCEEEEcccCCCCCC-------------CcCChhHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccccccCCCCCC
Q 021681 181 VDQIYHLACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~----~--~~r~v~iSS~~vy~~~~~~~ 241 (309)
+|.||||||...... ..+.+..++++|+.++.++++.+.+ . +.+++++||...|+.
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~----- 157 (253)
T PRK08217 83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN----- 157 (253)
T ss_pred CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC-----
Confidence 899999998643211 1124567789999999988776532 2 236999998876642
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+...|+.+|++.+.+++.++.+ .+++++.++||.+.++..
T Consensus 158 ------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~ 201 (253)
T PRK08217 158 ------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMT 201 (253)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc
Confidence 12367999999999999998865 589999999999988753
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=142.70 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcc--cccccccCCCceEEEecccccc------------c
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
+++|+++||||+ ++||.+++++|+++|++|++++|..+... +.+.......++..+.+|+.++ .
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 567899999997 89999999999999999999877532111 1122222234567788999776 2
Q ss_pred cCCCCEEEEcccCCCC----CCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|++|||||.... ... .+.+...+++|+.++..+++++.+. +.++|++||....
T Consensus 85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------------ 152 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE------------ 152 (257)
T ss_pred CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc------------
Confidence 3569999999986431 111 1245677899999999888887643 3489999997543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+. |++++.|.||.|-.+
T Consensus 153 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~ 197 (257)
T PRK08594 153 ----RVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTL 197 (257)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCH
Confidence 122233579999999999999998764 899999999999776
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=143.20 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=115.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++++|+||||+|+||.+++++|+++|++|++++|+......... .. ...++.+|+.++. ..++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~-~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD-EV---GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-Hc---CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999886432211111 11 1245677876651 2468
Q ss_pred CEEEEcccCCCCCC--C----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEecc-ccccCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTS-EVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 182 D~Vih~A~~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~-~vy~~~~~~~~~E~~~~~ 249 (309)
|+||||||...... . .+.+...+++|+.|+.++++.+. +.+ .++|++||. .+++.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~------------- 147 (255)
T PRK06057 81 DIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS------------- 147 (255)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-------------
Confidence 99999998643211 1 12367889999999988887764 333 389999885 44532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+ .|+++++++||.+.+|.
T Consensus 148 ---~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~ 191 (255)
T PRK06057 148 ---ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPL 191 (255)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCch
Confidence 112356999999988888877654 38999999999999875
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=159.08 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=124.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..++++++||||+|+||++++++|+++|++|++++|+.....+...... ....+..+.+|++++. +.
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999986433222111110 1236778899998862 23
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||........ +++..++++|+.|+.++++++.. .+ .+||++||...|.
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 457 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA-------------- 457 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc--------------
Confidence 589999999975433322 35678899999999999887643 33 4899999998774
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|-.+
T Consensus 458 --~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 458 --PSRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 2233468999999999999988765 4899999999998664
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-17 Score=143.69 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=117.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~------------~ 177 (309)
.+++|+++||||+++||++++++|++.|++|+++++......+.....+ ...++..+.+|++++ .
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999887653222111111111 124677889999875 1
Q ss_pred cCCCCEEEEcccCCCCC------CC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPV------HY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~------~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~ 242 (309)
+..+|++|||||..... .+ .+++...+++|+.+...+++.+.+ .+ .++|++||...+
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 156 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNL-------- 156 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccc--------
Confidence 34699999999854211 11 124566788999888777666543 33 389999996543
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+. |++++.+.||.+-.+
T Consensus 157 --------~~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~ 201 (260)
T PRK08416 157 --------VYIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTD 201 (260)
T ss_pred --------cCCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCh
Confidence 122233579999999999999998874 899999999998665
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=145.16 Aligned_cols=163 Identities=12% Similarity=0.010 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~------------~~ 178 (309)
+++|++|||||++ +||++++++|+++|++|++.+|+... .+...+... ......+.+|++++ .+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4678999999997 99999999999999999998875321 111111100 01123578898776 23
Q ss_pred CCCCEEEEcccCCCCC----C----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV----H----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~----~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|++|||||..... . ..+++...+++|+.++.++++++.+. +.++|++||.....
T Consensus 84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------------ 151 (271)
T PRK06505 84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------------ 151 (271)
T ss_pred CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------------
Confidence 5699999999964321 1 12357788999999999998877542 34899999975431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|-.+.
T Consensus 152 ----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~ 196 (271)
T PRK06505 152 ----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLA 196 (271)
T ss_pred ----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence 1223457999999999999999887 48999999999997763
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-17 Score=142.43 Aligned_cols=163 Identities=17% Similarity=0.093 Sum_probs=116.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccc--c------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVE--P------------I 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~--~------------~ 177 (309)
.++|+|+||||+|+||.+++++|++.|++|++++|+.........+. ....++.++..|+.+ + .
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999998653322111111 112345556666642 1 2
Q ss_pred cCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|+||||||...... ..+.+...+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 90 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~------------ 157 (247)
T PRK08945 90 FGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ------------ 157 (247)
T ss_pred hCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC------------
Confidence 346899999998643321 123467889999999999988874 3343 799999965431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+. ++++++++||.+-++
T Consensus 158 ----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~ 201 (247)
T PRK08945 158 ----GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA 201 (247)
T ss_pred ----CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence 11223579999999999999987664 799999999998665
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=146.11 Aligned_cols=161 Identities=17% Similarity=0.065 Sum_probs=118.4
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc-----------c
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-----------I 177 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~-----------~ 177 (309)
...+++|+++||||+|+||++++++|+++|++|++.++......+.....+ ...++..+.+|+.+. .
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999998864322221111111 134677888898765 1
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc------------CCcEEEEeccccccCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV------------GAKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~------------~~r~v~iSS~~vy~~~~~~~ 241 (309)
+..+|++|||||......+ .+++...+++|+.|+.++++++.+. ..++|++||...+..
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 161 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG----- 161 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC-----
Confidence 2469999999997543322 2356778999999999999886421 137999999765421
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeC
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIF 287 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~ 287 (309)
......|+.+|.+.+.+++.++.+ +|++++.+.|+
T Consensus 162 -----------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 162 -----------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 122357999999999999998875 58999999997
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=144.49 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=118.7
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCC--cccccccccCCCceEEEecccccc------------c
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTG--RKDNLVHHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~--~~~~~~~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
.++|+++||||+ ++||.+++++|+++|++|++.+|+.+. ..+.+...... . ..+.+|+++. .
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999997 799999999999999999998876321 11111111111 2 4678898776 2
Q ss_pred cCCCCEEEEcccCCCC----CCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|++|||||.... ..+ .++++..+++|+.|+..+++++.+. +.++|++||.....
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~----------- 149 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK----------- 149 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-----------
Confidence 3569999999996432 111 2356788999999999999887642 34899999865331
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ +|++++.+.||.|..+
T Consensus 150 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 193 (274)
T PRK08415 150 -----YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTL 193 (274)
T ss_pred -----CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccH
Confidence 1222367999999999999999876 4899999999999775
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=156.63 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=124.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
...+|+++||||+|+||.+++++|+++|++|++++|+....... .+.. ...+..+.+|+.++ .+..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKL-AEAL-GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHh-CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999999999999999864322211 1111 23455678888776 1245
Q ss_pred CCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||..... . ..++++.++++|+.|+.++++++.+. +.+||++||...+. +
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 407 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------A 407 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------C
Confidence 99999999964221 1 12356788999999999999988653 34899999976552 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 451 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPA 451 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCch
Confidence 2344689999999999999998764 8999999999998874
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=138.21 Aligned_cols=162 Identities=18% Similarity=0.129 Sum_probs=116.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc------------cCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
|++|||||+|+||++++++|+++|++|+++.+......+..... ....++.++.+|+.++. +..+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 58999999999999999999999999998887211111111111 11246778889987751 24589
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||........ +++...+++|+.++..+++.+ ++.+. ++|++||..... ..
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~----------------~~ 144 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK----------------GQ 144 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------CC
Confidence 999999865332221 245677899999988866654 44444 899999965331 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.....|+.+|.+.+.+++.++.+ .+++++.++||.+.+|..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~ 188 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMV 188 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccc
Confidence 22367999999999999888765 489999999999998753
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=142.27 Aligned_cols=162 Identities=16% Similarity=0.051 Sum_probs=119.1
Q ss_pred CCCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcc--cccccccCCCceEEEecccccc------------
Q 021681 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHFRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 113 ~~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~~~~~v~~~~~Dl~~~------------ 176 (309)
..++|+++||||+ ++||.+++++|+++|++|++++|+....+ +.+.... .....+.+|++++
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHH
Confidence 4578999999998 59999999999999999999988643211 1111111 2234678888775
Q ss_pred ccCCCCEEEEcccCCCCC----C----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPV----H----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~----~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|++|||||..... . ..++++..+++|+.++.++++++... +.++|++||....
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~----------- 153 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE----------- 153 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc-----------
Confidence 235699999999864321 1 12356788999999999999987543 3479999986532
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ +|++++.+.||.|-.+
T Consensus 154 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~ 198 (258)
T PRK07533 154 -----KVVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTR 198 (258)
T ss_pred -----cCCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCCh
Confidence 11223467999999999999999876 4899999999999775
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=143.59 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=114.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEeccccccc----------------
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI---------------- 177 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~~---------------- 177 (309)
++++||||+|+||++++++|+++|++|+++++......+.+...+ ....+..+.+|+++..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 479999999999999999999999999988654222211111111 1234556788888752
Q ss_pred cCCCCEEEEcccCCCCCCCc---------------CChhHHHHHHHHHHHHHHHHHHHcC-----------CcEEEEecc
Q 021681 178 LLEVDQIYHLACPASPVHYK---------------YNPVKTIKTNVMGTLNMLGLAKRVG-----------AKFLLTSTS 231 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~---------------~~~~~~~~~Nv~gt~~ll~~a~~~~-----------~r~v~iSS~ 231 (309)
+..+|+||||||........ .++..++++|+.++..+++++.+.. .+++++||.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 24699999999864322211 1256789999999999998764321 257777775
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 232 ~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
... .+......|+.+|++.+.+++.++.+ .|++++.|+||.+..|.
T Consensus 162 ~~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~ 210 (267)
T TIGR02685 162 MTD----------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPD 210 (267)
T ss_pred hcc----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcc
Confidence 432 23334568999999999999999877 58999999999987764
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=142.88 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=116.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~V 184 (309)
|+++||||+|+||++++++|+++|++|++++|+.....+...+......+..+.+|+.++ .+..+|++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 589999999999999999999999999999886433222111111123567788898765 23469999
Q ss_pred EEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHH----H-HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLA----K-RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 185 ih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a----~-~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|||||..... .. .+++...+.+|+.++..+.+.+ . +.+ .++|++||...+ .+
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~----------------~~ 144 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK----------------EP 144 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC----------------CC
Confidence 9999864311 11 1245566788988876665543 2 222 489999998764 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|.+.+.+++.++.+. |++++.+.||.+-.|.
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~ 188 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG 188 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence 3344689999999999999998874 7999999999987764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=161.71 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=103.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+|+||||+||||++++++|+++|++|+++++..... . ...+.++.+|+.+. .+.++|+|||||+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999999999998753211 1 12466788888765 457899999999743
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
.. .+++|+.|+.+++++|++.++ ++|++||.. |.++|+++
T Consensus 73 ~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~ll 113 (854)
T PRK05865 73 GR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQML 113 (854)
T ss_pred cc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHHH
Confidence 21 457999999999999999887 899999842 78888876
Q ss_pred HHHHHhcCCcEEEEEeCceeCCC
Q 021681 271 MDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
. +++++++++||++||||+
T Consensus 114 ~----~~gl~~vILRp~~VYGP~ 132 (854)
T PRK05865 114 A----DCGLEWVAVRCALIFGRN 132 (854)
T ss_pred H----HcCCCEEEEEeceEeCCC
Confidence 4 368999999999999996
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=141.00 Aligned_cols=161 Identities=21% Similarity=0.107 Sum_probs=117.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~D~ 183 (309)
|+++||||+|+||.+++++|++.|++|+++.++.....+...... ....+..+.+|+.++. +..+|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 579999999999999999999999999999876432221111111 1235778889987751 235899
Q ss_pred EEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
||||||....... .+++..++++|+.++..+++++.+ .+ .++|++||..... +.
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 144 (254)
T TIGR02415 81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE----------------GN 144 (254)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC----------------CC
Confidence 9999986433221 124567899999999988877643 22 4799999965431 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...+.|+.+|++.+.+++.++.+. ++++++++||.+.++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~ 187 (254)
T TIGR02415 145 PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM 187 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence 224679999999999999887664 7999999999987663
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=137.68 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=114.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc---CCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL---LEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~---~~~D~Vih~ 187 (309)
+|+++||||+|+||++++++|+++ ++|++++|......+ .... ...++++.+|+.++ .+ .++|+|||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~-~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 78 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDE-LAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN 78 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHH-HHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 579999999999999999999999 999999986432211 1111 12467788998775 22 259999999
Q ss_pred ccCCCCCCCc----CChhHHHHHHHHHHHHHHHH----HHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 188 ACPASPVHYK----YNPVKTIKTNVMGTLNMLGL----AKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~----a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
||........ +++...+++|+.+..++.+. +++.+.++|++||...++. ..+...|
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------~~~~~~y 142 (227)
T PRK08219 79 AGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRA----------------NPGWGSY 142 (227)
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCc----------------CCCCchH
Confidence 9864332211 23566789999995555444 4455568999999876632 2234679
Q ss_pred HHHHHHHHHHHHHHHHh-cC-CcEEEEEeCceeCCC
Q 021681 260 DEGKRTAETLTMDYHRG-AG-VEVRIARIFNTYGPR 293 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~-~g-i~~~ivRp~~V~Gp~ 293 (309)
+.+|.+.+.+++.++.+ .+ +++..++||.+.+|.
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~ 178 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDM 178 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchH
Confidence 99999999999988654 34 899999999887663
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=137.77 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=138.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEecccccccc--CCCCEEEEcccCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACPA 191 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~--~~~D~Vih~A~~~ 191 (309)
+|+|||||++|.+|++|.+.+.+.|. +-.++. .....++.+..-+...+ .++..|||+|+..
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~--------------~skd~DLt~~a~t~~lF~~ekPthVIhlAAmV 66 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI--------------GSKDADLTNLADTRALFESEKPTHVIHLAAMV 66 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe--------------ccccccccchHHHHHHHhccCCceeeehHhhh
Confidence 47999999999999999999998875 211111 11122222222223333 4589999999754
Q ss_pred CCCCCc-CChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 192 SPVHYK-YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 192 ~~~~~~-~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.....+ ......++.|+....|++..|-+.|+ ++++..|.++|.+....|++|+......+....-.|+.+|+++...
T Consensus 67 GGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~ 146 (315)
T KOG1431|consen 67 GGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQ 146 (315)
T ss_pred cchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHH
Confidence 433322 34567789999999999999999998 8999999999999999999999765444444445799999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHHh
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVAQ 308 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~~ 308 (309)
.+.|..++|...+.+-|.++|||.+++. ++.++|.+|++
T Consensus 147 n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r 187 (315)
T KOG1431|consen 147 NQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHR 187 (315)
T ss_pred HHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHH
Confidence 9999999999999999999999998876 48889988875
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=146.31 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=119.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEecccccc----------ccC--
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP----------ILL-- 179 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~----------~~~-- 179 (309)
.|++++||||+|+||++++++|+++|++|++++|+....++...+ ......+..+.+|+.+. .+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999875443221111 11123455666777631 122
Q ss_pred CCCEEEEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
++|++|||||..... .+ .+++...+++|+.|+.++++++.. .+ .++|++||...+..+
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~----------- 200 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP----------- 200 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-----------
Confidence 366999999975321 11 124567899999999999988643 33 489999997654210
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.||++.+.+.+.++.+. |++++.+.||.|-.+-
T Consensus 201 ---~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~ 245 (320)
T PLN02780 201 ---SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKM 245 (320)
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCc
Confidence 01124689999999999999998774 8999999999998763
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=142.24 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=117.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c-----------C
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L-----------L 179 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~-----------~ 179 (309)
+|+++||||+|+||++++++|+++|++|++++|+.... .... ...++..+.+|+.+.. + .
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS---LAAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh---hhhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999998764321 1111 2245777888887651 1 1
Q ss_pred CCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||...... . .+++...+++|+.|+..+++.+.+ .+ .++|++||...+
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~--------------- 141 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAAR--------------- 141 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhc---------------
Confidence 4799999998654321 1 124577889999998877766543 33 389999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG--AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~--~gi~~~ivRp~~V~Gp 292 (309)
.+..+...|+.+|.+.|.+++.++.+ .++++++++||.+-.|
T Consensus 142 -~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 142 -NAYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 23445578999999999999998865 5899999999998654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=141.89 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=116.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------ccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
|+++||||+|+||.+++++|+++|++|++++++.....+...+. .....+..+.+|+.++ .+..+|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999999887654322111111 1122344567787664 234589
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~--~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+||||||....... .+++...+++|+.++.++++++.+ . +.++|++||...+. +
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~----------------~ 144 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV----------------A 144 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------C
Confidence 99999986433222 224577899999999999998642 2 24899999975431 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+.+.++.+ +++++++++||.+.+|.
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~ 188 (272)
T PRK07832 145 LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL 188 (272)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 222357999999999988887754 58999999999999875
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=143.61 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC---------CCccccccccc-CCCceEEEecccccc-------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---------TGRKDNLVHHF-RNPRFELIRHDVVEP------- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~---------~~~~~~~~~~~-~~~~v~~~~~Dl~~~------- 176 (309)
.++|+++||||+++||.+++++|++.|++|+++++.. ........+.. ....+..+.+|++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 4678999999999999999999999999999987653 11111111110 123566788898775
Q ss_pred -----ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----c---C----CcEEEEeccccccC
Q 021681 177 -----ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V---G----AKFLLTSTSEVYGD 236 (309)
Q Consensus 177 -----~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~---~----~r~v~iSS~~vy~~ 236 (309)
.+..+|++|||||....... .+++...+++|+.|+..+++++.. . + .+||++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~- 162 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ- 162 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc-
Confidence 23569999999997543222 235788899999999999887642 1 1 3799999965441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIF 287 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~ 287 (309)
+......|+.+|++.+.+++.++.+ .|++++.|.||
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg 201 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA 201 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC
Confidence 2223467999999999999998876 58999999998
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=139.03 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=119.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCcccccccc-cCCCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~ 178 (309)
.+++|+++||||+|+||.+++++|+++|++|+++ .|+........... .....+.++.+|+.++. +
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999988 76543221111110 01345778889987762 1
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|+|||+||....... .+.+...+++|+.++.++++.+.. .+. ++|++||...+..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------------- 148 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------------- 148 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC-------------
Confidence 369999999987532211 124577899999999999888754 333 7999999755421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 149 ---~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~ 192 (247)
T PRK05565 149 ---ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEM 192 (247)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcc
Confidence 112357999999999998888765 38999999999997653
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=138.74 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=115.7
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc----CCCceEEEecccccc------------ccCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~----~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+++||||+|+||.++++.|+++|++|+++++......+...+.+ ....+..+.+|+.++ .+..+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 38999999999999999999999999999986222211111111 112334567787665 23468
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHH----HHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVM----GTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~----gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||........ +++...+++|+. ++..+++.+++.+. ++|++||...+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~---------------- 144 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA---------------- 144 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC----------------
Confidence 9999999865432222 245677889998 66677777766654 8999999876632
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCceeCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~-----gi~~~ivRp~~V~Gp~~ 294 (309)
......|+.+|.+.+.+++.++.+. +++++.++||.+.+|..
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~ 191 (251)
T PRK07069 145 EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIV 191 (251)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcch
Confidence 2233579999999999999887653 48999999999998853
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=138.26 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=118.6
Q ss_pred EEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEEEcccCC
Q 021681 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIYHLACPA 191 (309)
Q Consensus 120 lITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vih~A~~~ 191 (309)
|||||+|+||++++++|+++|++|++++|+...........-....++++.+|++++ ....+|++||+||..
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~ 80 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT 80 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 699999999999999999999999999986432221111110134577888998776 224589999999864
Q ss_pred CCCCC----cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 192 SPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 192 ~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
....+ .+++..++++|+.++.+++++....+. ++|++||...+. +..+.+.|+.+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~----------------~~~~~~~Y~~sK~a~ 144 (230)
T PRK07041 81 PGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR----------------PSASGVLQGAINAAL 144 (230)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC----------------CCCcchHHHHHHHHH
Confidence 43222 235678899999999999996654443 899999988763 233456899999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 267 ETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 267 E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
+.+++.++.+. +++++.++||.+-+|.
T Consensus 145 ~~~~~~la~e~~~irv~~i~pg~~~t~~ 172 (230)
T PRK07041 145 EALARGLALELAPVRVNTVSPGLVDTPL 172 (230)
T ss_pred HHHHHHHHHHhhCceEEEEeecccccHH
Confidence 99999998764 6899999999886653
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=138.73 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=121.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc--------ccCCCCE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP--------ILLEVDQ 183 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~--------~~~~~D~ 183 (309)
.++|+++||||+|+||.+++++|++.|++|++++|+.........+. ....++..+.+|+.++ .+..+|+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 56789999999999999999999999999999998644322211111 0124577788888765 2356999
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
+|||||........ +++...+++|+.+...+++.+. +.+ .++|++||.... .+..
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~----------------~~~~ 148 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE----------------NPDA 148 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc----------------CCCC
Confidence 99999864322222 2567889999999999988763 333 379999886432 1223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
....|+.+|.+.+.+++.++.+ .|++++.+.||.+..|
T Consensus 149 ~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 149 DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 3467999999999999998765 4899999999999876
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=158.23 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=124.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..++|+++||||+|+||.+++++|+++|++|++++|+.....+...+.. ...++.++.+|+.+.. +.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999986433222111110 1246778889997761 23
Q ss_pred CCCEEEEcccCCCCCCC------cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY------KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~------~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+|++|||||....... .+++...+++|+.|+.++++++. +.+ .++|++||..++..
T Consensus 448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 515 (657)
T PRK07201 448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN------------ 515 (657)
T ss_pred CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC------------
Confidence 69999999996432221 12467889999999999877763 334 38999999887742
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ .|+++++++||.|..+-
T Consensus 516 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~ 559 (657)
T PRK07201 516 ----APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPM 559 (657)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccc
Confidence 223467999999999999998866 48999999999998764
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=139.28 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
+++|+++||||+|+||+.++++|+++|++ |++++|............ .....+.++..|+.++. +.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999998 998887643222111111 01235667788887651 24
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|+||||||....... .+.+..++++|+.++.++++++.+ .+ .++|++||...++..
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~------------ 151 (260)
T PRK06198 84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ------------ 151 (260)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC------------
Confidence 68999999986543222 123567799999999999888754 22 369999998776421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...+.|+.+|.+.|.+++.++.+. +++++.++||.++++.
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~ 194 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEG 194 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcc
Confidence 123679999999999999887664 6999999999999985
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=137.41 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=116.7
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCCCCEE
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEVDQI 184 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~~D~V 184 (309)
|+||||+|+||.+++++|+++|++|+++++......+.....+ ...++.++.+|+.+. ....+|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6899999999999999999999999888764322211111111 124577888998766 12458999
Q ss_pred EEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHH-----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||...... ..+++..++++|+.++.++++++. +.+ .++|++||...+. +..
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~~ 144 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM----------------GNR 144 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc----------------CCC
Confidence 99998654322 223567889999999999988752 122 3899999965431 112
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
....|+.+|++.+.+++.++.+ .|++++.++||.+.++..
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 187 (239)
T TIGR01831 145 GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEML 187 (239)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccc
Confidence 2357999999999999888766 489999999999988753
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=140.28 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=118.7
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCC-c-ccccccccC-CCceEEEecccccc------------
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTG-R-KDNLVHHFR-NPRFELIRHDVVEP------------ 176 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~-~-~~~~~~~~~-~~~v~~~~~Dl~~~------------ 176 (309)
.++|+++||||+ +.||.+++++|++.|++|++.++.... + .+...+... ...+..+.+|+.++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 467899999986 799999999999999999887654321 1 111111111 12355678888776
Q ss_pred ccCCCCEEEEcccCCCC----CCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|++|||||.... ..+ .++++..+++|+.++..+++++.+. +.++|++||....
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----------- 152 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----------- 152 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc-----------
Confidence 23469999999996431 111 2356788999999999998886532 3589999996543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+. |++++.+.||.|-.+
T Consensus 153 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~ 197 (258)
T PRK07370 153 -----RAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTL 197 (258)
T ss_pred -----cCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCc
Confidence 122234679999999999999998764 799999999999776
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=139.75 Aligned_cols=162 Identities=12% Similarity=-0.010 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC-CceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++||||++ +||.+++++|+++|++|++.+|+.. ..+...+.... .....+.+|+.++ .+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-LEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-HHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999999997 8999999999999999998877521 11111111111 1123567888776 23
Q ss_pred CCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|++|||||.... .. ..+++...+++|+.++..+++.+.+. +.++|++||.....
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------ 152 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------ 152 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence 569999999986431 11 12357788999999999998876432 34899999965431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ +||+++.+.||.|-.+
T Consensus 153 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 196 (260)
T PRK06603 153 ----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTL 196 (260)
T ss_pred ----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcch
Confidence 1222367999999999999999876 4899999999999765
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=142.02 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=121.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++|+++||||+++||.+++++|+++| ++|++++|+.....+...+. .....+..+.+|+.+. ....
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999 99999988644322111111 1224567788888765 1246
Q ss_pred CCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcC---CcEEEEeccccccCCCC----CCCCC
Q 021681 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVG---AKFLLTSTSEVYGDPLE----HPQKE 244 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~---~r~v~iSS~~vy~~~~~----~~~~E 244 (309)
+|++|||||+..+.. ..+.+...+++|+.|+..+++++. +.+ .+||++||...+..... .+.+.
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 999999999643221 123567789999999988877653 332 48999999876542110 00000
Q ss_pred C-------CC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 245 T-------YW------GNVNPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 245 ~-------~~------~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
. .+ ....+..+...|+.||++...+++.++++ .|+.++.++||.|...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T 226 (314)
T TIGR01289 162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADT 226 (314)
T ss_pred cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCC
Confidence 0 00 01123345578999999999988888765 3799999999999643
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=139.03 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=117.3
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++||||++ +||+++++.|+++|++|++.+++. ...+...+.. .......+.+|+.++ .+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 4678999999985 999999999999999999888752 1111111111 112345678898776 23
Q ss_pred CCCCEEEEcccCCCCCC---------CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH---------YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~---------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..+|++|||||...... ..++++..+++|+.|...+.+++... +.++|++||....
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------------ 150 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------ 150 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC------------
Confidence 46999999998643211 11245678899999999988887542 3479999986532
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.+.||.|..+
T Consensus 151 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~ 195 (262)
T PRK07984 151 ----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTL 195 (262)
T ss_pred ----CCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccch
Confidence 12223467999999999999999876 4899999999999765
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=139.85 Aligned_cols=173 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc-----------cCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----------LLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~-----------~~~~D~ 183 (309)
+|+++|||| |+||++++++|. +|++|++++|+.....+...+.. ...++..+.+|+.++. +..+|+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 568999998 799999999996 89999999986433222111111 1235677888987751 246999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCC-----CCCCCCCCCCCCC----
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPL-----EHPQKETYWGNVN---- 251 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~-----~~~~~E~~~~~~~---- 251 (309)
+|||||... ...++..++++|+.|+.++++++.+. +.++|++||........ ........+.+..
T Consensus 80 li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PRK06940 80 LVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPF 156 (275)
T ss_pred EEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccc
Confidence 999998642 23568899999999999999988653 34677788765432110 0000010000000
Q ss_pred --C---CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 --P---IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 --~---~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+ ......|+.||++.+.+++.++.+ .||+++.+.||.+..+-
T Consensus 157 ~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~ 206 (275)
T PRK06940 157 LQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPL 206 (275)
T ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCcc
Confidence 0 023467999999999999988776 48999999999998873
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=140.27 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=117.8
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCc--ccccccccCCCceEEEecccccc------------c
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGR--KDNLVHHFRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~--~~~~~~~~~~~~v~~~~~Dl~~~------------~ 177 (309)
.++|+++||||+ ++||.+++++|+++|++|++++|..... .+.+.... .....+.+|+.++ .
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL--GAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc--CCceEEecCCCCHHHHHHHHHHHHHh
Confidence 356899999997 8999999999999999998887642111 11111111 2244678898775 2
Q ss_pred cCCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|++|||||.... .. ..+++...+++|+.++..+++++.+. +.++|++||....
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~------------ 153 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE------------ 153 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence 3469999999996432 11 12357888999999999999987653 3489999986533
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ +|++++.+.||.+..+
T Consensus 154 ----~~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 198 (272)
T PRK08159 154 ----KVMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTL 198 (272)
T ss_pred ----cCCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCH
Confidence 12223467999999999999999876 4899999999999764
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=138.80 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=115.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----cC---------C-
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL---------E- 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~~---------~- 180 (309)
+|+++||||+|+||++++++|+++|++|++++|........+... ....+.++.+|+.++. ++ +
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDNV 79 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCcccC
Confidence 368999999999999999999999999999988642211111111 1245778888987651 11 1
Q ss_pred -CCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 181 -VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 181 -~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+++|||||...... ..+++...+++|+.++..+++.+.+ .+ .++|++||..++
T Consensus 80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------------- 145 (251)
T PRK06924 80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK-------------- 145 (251)
T ss_pred CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc--------------
Confidence 127999998643321 1234677788999998777766533 22 379999997654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .+++++.++||.+-.+.
T Consensus 146 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~ 193 (251)
T PRK06924 146 --NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNM 193 (251)
T ss_pred --CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHh
Confidence 34445578999999999999998865 37999999999887653
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=135.14 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCc-------cc---cccccc--CCCceEEEecccccc---
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGR-------KD---NLVHHF--RNPRFELIRHDVVEP--- 176 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~-------~~---~~~~~~--~~~~v~~~~~Dl~~~--- 176 (309)
.++|+++||||+| +||.+++++|+++|++|+++++....+ .. ...+.+ ....+..+.+|+.+.
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 5688999999995 899999999999999998875421110 00 111111 124577788998765
Q ss_pred ---------ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHc-CCcEEEEeccccccCCC
Q 021681 177 ---------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRV-GAKFLLTSTSEVYGDPL 238 (309)
Q Consensus 177 ---------~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~-~~r~v~iSS~~vy~~~~ 238 (309)
.+..+|++|||||........ ++++..+++|+.+...+.+.+ ++. +.++|++||...+
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---- 159 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ---- 159 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC----
Confidence 234589999999864332222 246778999999999886554 333 2389999997644
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .+++++.++||.+-.+.
T Consensus 160 ------------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~ 205 (256)
T PRK12859 160 ------------GPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGW 205 (256)
T ss_pred ------------CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCC
Confidence 23334578999999999999998876 48999999999987753
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=139.37 Aligned_cols=162 Identities=10% Similarity=-0.032 Sum_probs=116.1
Q ss_pred CCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++|||| +++||++++++|+++|++|++.++..+ ..+...+... ......+.+|+.++ .+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999997 679999999999999999998876421 1111111111 12234678898776 23
Q ss_pred CCCCEEEEcccCCCCC----C-Cc----CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV----H-YK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~----~-~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
..+|++|||||..... . .+ +.+...+++|+.++..+++.+.. .+.++|++||...+.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---------- 152 (261)
T PRK08690 83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---------- 152 (261)
T ss_pred CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc----------
Confidence 5699999999975321 1 11 24567789999999888887543 224799999876441
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +|++++.+.||.|-.+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~ 196 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTL 196 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccch
Confidence 2223467999999999999998765 5899999999999776
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-16 Score=133.85 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=117.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------cC--CCCEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LL--EVDQIY 185 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--------~~--~~D~Vi 185 (309)
|++++||||+|+||++++++|++.|++|++++++.....+ +. ...++++.+|+.+.. +. .+|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~-~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA-LQ----ALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH-HH----hccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999886432221 11 123456788887651 22 489999
Q ss_pred EcccCCCCCC------CcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccc-cccCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPVH------YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSE-VYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 186 h~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|+||...... ..++++..+++|+.++.++++++.+. +.+++++||.. .++.. +..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~~ 141 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TGT 141 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cCC
Confidence 9998652211 22356788999999999999998652 24789998854 44321 111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
+...|+.+|...+.+++.++.++ +++++.++||.+..+.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~ 181 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDM 181 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCC
Confidence 12369999999999999987665 8999999999998874
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=135.30 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=125.7
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
....+|+.||||||++++|+.++.+|+++|..+++.|.+.....+.....-....+....+|+++. ..
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 445678899999999999999999999999999999988766655443332223677888999776 34
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----H-cCCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----R-VGAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~-~~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||+....... ++.++++++|+.|.....++.. + ...++|-++|...+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~--------------- 177 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL--------------- 177 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc---------------
Confidence 5699999999987655433 2457889999999988877753 3 33589999997654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh------cCCcEEEEEeCcee
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG------AGVEVRIARIFNTY 290 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~------~gi~~~ivRp~~V~ 290 (309)
........|+.||.++..+-+.+..+ .|++++.+.|+.+=
T Consensus 178 -~g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~ 223 (300)
T KOG1201|consen 178 -FGPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN 223 (300)
T ss_pred -cCCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc
Confidence 23333467999999999988887655 37999999998765
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=138.07 Aligned_cols=162 Identities=13% Similarity=-0.045 Sum_probs=116.7
Q ss_pred CCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++|||| ++.||.+++++|+++|++|+++++..+. .+.+.+... ......+.+|+.++ .+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHH-HHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 45789999996 6799999999999999999988654221 111111100 01223577888776 23
Q ss_pred CCCCEEEEcccCCCCC----C-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV----H-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~----~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..+|++|||||..... . ..++++..+++|+.++..+++++.+. +.++|++||....
T Consensus 83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------------ 150 (260)
T PRK06997 83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------------ 150 (260)
T ss_pred CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence 5699999999974321 1 12356778999999999999887653 2479999986543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ +|++++.+.||.|-.+
T Consensus 151 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~ 195 (260)
T PRK06997 151 ----RVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTL 195 (260)
T ss_pred ----cCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccc
Confidence 12222457999999999999999876 4899999999998765
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=129.59 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=109.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vih~A 188 (309)
|+++||||+|+||.+++++|+++ ++|++++|+.. .+.+|+.++ .+.++|++||||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEECC
Confidence 58999999999999999999999 99999887431 234555443 234699999999
Q ss_pred cCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 189 CPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 189 ~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
|....... .+++.+.+++|+.++.++++++.+. +.+++++||.... .+......|+.
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~----------------~~~~~~~~Y~~ 127 (199)
T PRK07578 64 GKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD----------------EPIPGGASAAT 127 (199)
T ss_pred CCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC----------------CCCCCchHHHH
Confidence 86432222 2256778999999999999988653 3479999986543 22233468999
Q ss_pred HHHHHHHHHHHHHHh--cCCcEEEEEeCceeCC
Q 021681 262 GKRTAETLTMDYHRG--AGVEVRIARIFNTYGP 292 (309)
Q Consensus 262 sK~~~E~~v~~~a~~--~gi~~~ivRp~~V~Gp 292 (309)
+|.+.+.+++.++.+ .|++++.++||.+-.+
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~ 160 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTES 160 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCc
Confidence 999999999998876 4899999999998665
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-16 Score=134.30 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=114.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c----CCCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L----LEVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~----~~~D~Vih~ 187 (309)
|+++||||+|+||++++++|+++|++|++++|+.....+ ..+ ...+..+.+|+.++. + ..+|++|||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~-~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEV-AAK---ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH---hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 479999999999999999999999999999875432211 111 113456778887652 1 258999999
Q ss_pred ccCCCC---C---C---CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASP---V---H---YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 188 A~~~~~---~---~---~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
||.... . . ..+++.+.+++|+.++.++++++.+. +.++|++||... + .
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~------------------~--~ 136 (223)
T PRK05884 77 PAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP------------------P--A 136 (223)
T ss_pred CCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC------------------C--C
Confidence 974211 0 1 12457889999999999999998652 348999998641 1 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
...|+.+|++.+.+++.++.+ +|++++.+.||.+..|
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 257999999999999999876 4899999999999766
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-16 Score=150.76 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=122.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.++|+++||||+++||.+++++|+++|++|++++|+.....+...+. ...+..+.+|+.++ .+..+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999999988644332221111 23456688888776 12469
Q ss_pred CEEEEcccCCCCC------CCcCChhHHHHHHHHHHHHHHHHHHHc------CCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPV------HYKYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 182 D~Vih~A~~~~~~------~~~~~~~~~~~~Nv~gt~~ll~~a~~~------~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
|++|||||..... ...+++..++++|+.++..+++++.+. +.++|++||.....
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~-------------- 146 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV-------------- 146 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------------
Confidence 9999999863211 112357889999999999999887543 23899999976542
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .+++++.++||.|..|.
T Consensus 147 --~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 147 --ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 2223467999999999999998876 48999999999987764
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=132.72 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=115.9
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------cCCCCEE
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEVDQI 184 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~~D~V 184 (309)
|+|||++|+||++++++|+++|++|+++++............+ ....+.++.+|++++. +..+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 5899999999999999999999999999876422111111111 1234678888887662 2358999
Q ss_pred EEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccc-cccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSE-VYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
||+||....... .+.+...+++|+.++.++++.+.+. + .+++++||.. +|+. .
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~-----------------~ 143 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN-----------------A 143 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC-----------------C
Confidence 999996432211 2346778999999999999988653 3 3899999964 4432 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~ 185 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDM 185 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChh
Confidence 2357999999999999888765 48999999999987763
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=134.65 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=111.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-------------cCCCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------LLEVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-------------~~~~D~ 183 (309)
|+|+||||+|+||.++++.|+++|++|++++|+....+. .. ...++.+.+|+.+.. ...+|.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~-~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ 77 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVAR-MN----SLGFTGILLDLDDPESVERAADEVIALTDNRLYG 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHH-HH----hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeE
Confidence 589999999999999999999999999999886433221 11 123566777776541 135799
Q ss_pred EEEcccCCCCCCC----cCChhHHHHHHHHHHHHHH----HHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNML----GLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll----~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
+||+||....... .+++...+++|+.|+.++. +.+++.+. ++|++||...+. +..
T Consensus 78 ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~~ 141 (256)
T PRK08017 78 LFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------STP 141 (256)
T ss_pred EEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------CCC
Confidence 9999986432221 1245678999999988864 44555554 799999964431 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHH---hcCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~---~~gi~~~ivRp~~V~Gp 292 (309)
....|+.+|...|.+.+.++. ..++++++++||.+..+
T Consensus 142 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~ 182 (256)
T PRK08017 142 GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTR 182 (256)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccc
Confidence 346799999999998877643 35899999999988665
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=135.63 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=117.5
Q ss_pred CCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCC-cccccccccCCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
.++|+++|||| +++||.+++++|+++|++|++.+|+... ..+.+...+. ..+..+.+|+.++ .+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999 8999999999999999999998865311 1111222122 2456788898776 23
Q ss_pred CCCCEEEEcccCCCC----CCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|++|||||.... ..+ .+++.+.+++|+.++..+++++... +.++|++|+....
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------------- 150 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------------- 150 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-------------
Confidence 569999999997521 111 1245667999999999998887542 3478888764321
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.||++.+.+++.++.+ +|++++.+.||.+-.|-
T Consensus 151 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~ 195 (256)
T PRK07889 151 ----AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLA 195 (256)
T ss_pred ----cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChh
Confidence 1112357999999999999999876 48999999999998763
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=131.26 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=115.8
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC-CCCEEEEcccCCCCCC-C
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACPASPVH-Y 196 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~-~~D~Vih~A~~~~~~~-~ 196 (309)
|+|||||||||++|+.+|.+.|++|+++.|+......+... .+. ..|-.+.... ++|+|||+||...... +
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~-----~v~--~~~~~~~~~~~~~DavINLAG~~I~~rrW 73 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHP-----NVT--LWEGLADALTLGIDAVINLAGEPIAERRW 73 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCc-----ccc--ccchhhhcccCCCCEEEECCCCccccccC
Confidence 68999999999999999999999999999976655443321 111 1222233333 7999999999543333 2
Q ss_pred c-CChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021681 197 K-YNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272 (309)
Q Consensus 197 ~-~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (309)
. ...+..++.-+..|..|.++..+... .+|.-|..+.||...+..++|+ ++. ...+-+..-..-|..+..
T Consensus 74 t~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~-----~~~-g~~Fla~lc~~WE~~a~~ 147 (297)
T COG1090 74 TEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEE-----SPP-GDDFLAQLCQDWEEEALQ 147 (297)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecC-----CCC-CCChHHHHHHHHHHHHhh
Confidence 2 23466788899999999999886653 3555555788999988888887 232 234556666666777666
Q ss_pred HHHhcCCcEEEEEeCceeCCC
Q 021681 273 YHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 273 ~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
++..|++++.+|.|+|+||.
T Consensus 148 -a~~~gtRvvllRtGvVLs~~ 167 (297)
T COG1090 148 -AQQLGTRVVLLRTGVVLSPD 167 (297)
T ss_pred -hhhcCceEEEEEEEEEecCC
Confidence 35569999999999999974
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=137.58 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=117.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc------ccc---cccccC--CCceEEEecccccc-----
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR------KDN---LVHHFR--NPRFELIRHDVVEP----- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~------~~~---~~~~~~--~~~v~~~~~Dl~~~----- 176 (309)
.+++|+++||||+++||.+++++|++.|++|++++|+.... .+. ..+.+. ...+..+.+|+.++
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 35688999999999999999999999999999998864211 111 111111 23466788998776
Q ss_pred -------ccCCCCEEEEcc-cCCC--C--CCC----cCChhHHHHHHHHHHHHHHHHHHH----c-CCcEEEEecccc-c
Q 021681 177 -------ILLEVDQIYHLA-CPAS--P--VHY----KYNPVKTIKTNVMGTLNMLGLAKR----V-GAKFLLTSTSEV-Y 234 (309)
Q Consensus 177 -------~~~~~D~Vih~A-~~~~--~--~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~~r~v~iSS~~v-y 234 (309)
.+..+|++|||| |... . ... .+++...+++|+.++..+++++.+ . +.+||++||... +
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 234699999999 6421 0 111 124567889999999998887643 2 248999998543 2
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 235 ~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
.. .+......|+.+|++.+.+++.++.+. ||+++.|.||.|-.|
T Consensus 165 ~~--------------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 165 NA--------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cC--------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 11 011123569999999999999988764 799999999998665
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=134.56 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
..++|+++||||+|+||++++++|+++|++|++++|+......... .. ....+..|+.+. .+.++|++|||
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~~iDilVnn 86 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND---ES-PNEWIKWECGKEESLDKQLASLDVLILN 86 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc---cC-CCeEEEeeCCCHHHHHHhcCCCCEEEEC
Confidence 4577899999999999999999999999999999876421111111 11 124566777654 45679999999
Q ss_pred ccCCCCCCC-cCChhHHHHHHHHHHHHHHHHHHHc-------CC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 188 ACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRV-------GA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 188 A~~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~-------~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
||....... .+++...+++|+.|+.++++++.+. +. .++..||...+. +. ....
T Consensus 87 AG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~~-~~~~ 149 (245)
T PRK12367 87 HGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------PA-LSPS 149 (245)
T ss_pred CccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------CC-CCch
Confidence 986433222 3467888999999999999987542 12 344445543221 11 2356
Q ss_pred HHHHHHHHHHHH---HHHHH---hcCCcEEEEEeCceeCC
Q 021681 259 YDEGKRTAETLT---MDYHR---GAGVEVRIARIFNTYGP 292 (309)
Q Consensus 259 Y~~sK~~~E~~v---~~~a~---~~gi~~~ivRp~~V~Gp 292 (309)
|+.||++.+.+. ++++. ..++.+..+.||.+..+
T Consensus 150 Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~ 189 (245)
T PRK12367 150 YEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSE 189 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccc
Confidence 999999986543 22222 25888999999887544
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=131.27 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=115.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------c--CCCCEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------L--LEVDQIY 185 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--------~--~~~D~Vi 185 (309)
+|+|+||||+|+||++++++|+++|++|++++|......+ +.. ...+....+|+.++. + .++|+||
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA-LQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH-HHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 3689999999999999999999999999999987543221 111 124556677876651 1 2599999
Q ss_pred EcccCCCCCC------CcCChhHHHHHHHHHHHHHHHHHHHc---C-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPVH------YKYNPVKTIKTNVMGTLNMLGLAKRV---G-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 186 h~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
||||...... ...++...+.+|+.++..+++++.+. + ..++++||.... ... .+...
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~--~~~-----------~~~~~ 143 (225)
T PRK08177 77 VNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGS--VEL-----------PDGGE 143 (225)
T ss_pred EcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccc--ccc-----------CCCCC
Confidence 9998753321 11245677889999999999987543 2 367888774321 100 12223
Q ss_pred CCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...|+.+|.+.+.+++.++.+ .+++++.++||.+-.+.
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 356999999999999999876 47999999999998764
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=133.32 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=125.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc----ccCCCceEEEecccccc-----------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~----~~~~~~v~~~~~Dl~~~----------- 176 (309)
..+.+|+++||||+.+||++++++|++.|++|++.+|..+...+.... .....++..+.+|+.++
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999876543322211 11245678888998754
Q ss_pred -c-cCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHH-HHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCC
Q 021681 177 -I-LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMG-TLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQK 243 (309)
Q Consensus 177 -~-~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~g-t~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~ 243 (309)
. +.++|++|||||...... ..+.++..+++|+.| ..++.+++..+ + ..++++||...+..
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~------- 156 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP------- 156 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC-------
Confidence 2 466999999999755442 223578899999995 66666665432 2 37888888765421
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...+...|+.+|.+.+++.+.++.+ +|++++.+.||.|..+-
T Consensus 157 --------~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 157 --------GPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL 201 (270)
T ss_pred --------CCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence 1111167999999999999999877 48999999999999874
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=129.10 Aligned_cols=161 Identities=7% Similarity=0.012 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC-
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL- 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~- 179 (309)
.++|+++||||++.||.+++++|+++|++|++++|+....++...+.. ....+..+.+|+.++ .+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999886543322211110 123455667777665 234
Q ss_pred CCCEEEEcccCCCCCC-Cc----CChhHHHHHHHHHHHHHHHHHH----HcC--CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-YK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+|++|||||...... +. +++.+.+.+|+.++..+++.+. +.+ ..+|++||...+
T Consensus 83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------- 148 (227)
T PRK08862 83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------- 148 (227)
T ss_pred CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC--------------
Confidence 7999999997432221 21 2345677889988887766543 332 489999985432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+.+.++.+ +|++++.|.||.+-.+.
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence 12357999999999999998876 48999999999988763
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=131.60 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=114.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
|+++||||+++||.+++++|+ +|++|++++|+....++...+.. ....+..+.+|+.++ ....+|
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999998 59999999886543322211111 122467788898776 234699
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcC--CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
++|||||....... ..+..+.+.+|+.+..++++.+ .+.+ .++|++||...+- +
T Consensus 80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------~ 143 (246)
T PRK05599 80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR----------------A 143 (246)
T ss_pred EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------C
Confidence 99999997543221 1124466788998887766554 3332 4899999976441 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+ .|++++.+.||.|..+
T Consensus 144 ~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 144 RRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred CcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 223457999999999999998876 4799999999999876
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=134.14 Aligned_cols=179 Identities=17% Similarity=0.092 Sum_probs=131.9
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cccccCCCceEEEecccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~Dl~~~------------ 176 (309)
.+..+++++||||+++||.+++++|+.+|.+|+...|+.....+. +........+.+..+|+.+.
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999986433222 22234466777899999776
Q ss_pred ccCCCCEEEEcccCCCCCC--CcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEecccc-ccCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEV-YGDPLEHPQKETYWG 248 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~v-y~~~~~~~~~E~~~~ 248 (309)
.....|++|+|||+..+.. ..+..+..+.+|+.|+..|.+++. +.. .|+|++||... ..........|..
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~-- 188 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKA-- 188 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhc--
Confidence 2345999999999887666 334678899999999988887753 333 59999999764 1111111111210
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~~ 294 (309)
........|+.||.+...++.+++++. |+.+..+.||.|.++..
T Consensus 189 --~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 189 --KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred --cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 012222369999999999999998775 69999999999998854
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=132.74 Aligned_cols=159 Identities=14% Similarity=0.045 Sum_probs=115.2
Q ss_pred eEEEEcCCchhHHHHHHHHHH----CCCeEEEEecCCCCcccccccc---cCCCceEEEeccccccc-----c-------
Q 021681 118 RIVVTGGAGFVGSHLVDKLID----RGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI-----L------- 178 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~----~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~~-----~------- 178 (309)
.++||||+++||.+++++|++ .|++|+++.|+.....+...+. .....+..+.+|+.+.. +
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 689999999999999999997 7999999988654332211111 11235778888987751 1
Q ss_pred C----CCCEEEEcccCCCCCC--C-----cCChhHHHHHHHHHHHHHHHHHHHc-----C--CcEEEEeccccccCCCCC
Q 021681 179 L----EVDQIYHLACPASPVH--Y-----KYNPVKTIKTNVMGTLNMLGLAKRV-----G--AKFLLTSTSEVYGDPLEH 240 (309)
Q Consensus 179 ~----~~D~Vih~A~~~~~~~--~-----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~--~r~v~iSS~~vy~~~~~~ 240 (309)
. +.|++|||||...... . .+++...+++|+.|+..+++.+.+. + .++|++||...+
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~------ 155 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI------ 155 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC------
Confidence 1 1269999998643211 1 1345788999999998888776432 2 379999997654
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ .|++++.+.||.|-.+
T Consensus 156 ----------~~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 156 ----------QPFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 12233468999999999999998876 4799999999999765
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=135.76 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=115.0
Q ss_pred EEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cCCCCEEE
Q 021681 120 VVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LLEVDQIY 185 (309)
Q Consensus 120 lITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~~~D~Vi 185 (309)
+||||+++||.+++++|+++| ++|++++|+.....+..... .....+..+.+|+.+.. ...+|++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999 99999887643222111111 11235677788887651 24589999
Q ss_pred EcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcC---CcEEEEeccccccCCC-C--CC---------
Q 021681 186 HLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVG---AKFLLTSTSEVYGDPL-E--HP--------- 241 (309)
Q Consensus 186 h~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~---~r~v~iSS~~vy~~~~-~--~~--------- 241 (309)
||||...... ..+++...+++|+.|+..+++++. +.+ .++|++||...+-... . .+
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 9999743221 123567889999999888877653 333 4899999976542100 0 00
Q ss_pred ----CC-C--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 242 ----QK-E--TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 242 ----~~-E--~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
.+ + ..+.......+...|+.||++.+.+++.++++ .|+.++.++||.|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 222 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATT 222 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCc
Confidence 00 0 00000112234567999999988877888765 3799999999999654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-15 Score=140.42 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=117.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
..++++++||||+|+||..+++.|+++|++|+++++.... +.+.+.........+.+|++++. ...
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 284 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVANRVGGTALALDITAPDAPARIAEHLAERHGG 284 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence 3468899999999999999999999999999998874221 11111111112346677876651 236
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+.+...+++|+.|+.++++++... +.+||++||...+..
T Consensus 285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g--------------- 349 (450)
T PRK08261 285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG--------------- 349 (450)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC---------------
Confidence 8999999996543222 2346778999999999999998763 247999999764421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|...+.+++.++.+ .|++++.+.||.+-.+
T Consensus 350 -~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~ 392 (450)
T PRK08261 350 -NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQ 392 (450)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcch
Confidence 112367999999999999888765 4899999999987543
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=119.84 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=112.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc---ccc-cCCCceEEEeccccccc------------cC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHH-FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~---~~~-~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
++++||||+|+||.+++++|+++|. .|+++.|+........ ... .....+..+..|+.++. +.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999986 5777776543222111 110 01245677888887641 23
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
.+|.|||+||........ +++...+++|+.++.++++++++.+. +++++||...+. +..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------------~~~ 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------------GNP 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc----------------CCC
Confidence 479999999864322221 34677899999999999999977664 799999865431 112
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCcee
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~ 290 (309)
....|+.+|.+.+.+++.+. ..+++++.+.||.+-
T Consensus 145 ~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 GQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred CchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 33679999999999997654 568999999887764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=125.31 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=112.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vih 186 (309)
|+|+||||+|+||++++++|+++| ..|...++..... .....+.++.+|+.+. .+.++|+|||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999986 4555555432211 1234677788898765 2457999999
Q ss_pred cccCCCCCC------Cc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEecccc-ccCCCCCCCCCCCCCCC
Q 021681 187 LACPASPVH------YK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEV-YGDPLEHPQKETYWGNV 250 (309)
Q Consensus 187 ~A~~~~~~~------~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~v-y~~~~~~~~~E~~~~~~ 250 (309)
|||...... .. +.+...+.+|+.++..+++.+.+. + .+++++||... ...
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~-------------- 139 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISD-------------- 139 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccccccc--------------
Confidence 999754221 11 135578999999999988887542 2 37888887421 100
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .+++++.+.||.+.++.
T Consensus 140 ~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~ 187 (235)
T PRK09009 140 NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTAL 187 (235)
T ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCC
Confidence 12223467999999999999998865 37999999999998764
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=122.18 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=108.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC--CCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF--FTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~--~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
|+++||||+|.||.+++++|+++|. .|+++.|+ .....+...+. -...++.++.+|+.++ ....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999999965 67777776 11111111111 1236788899998776 2346
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
+|++|||||........+ ++.+.+++|+.+...+.+++...+. ++|++||.... .+...
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~~~~~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV----------------RGSPG 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT----------------SSSTT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc----------------cCCCC
Confidence 999999999766433332 4678899999999999999988443 89999997755 23444
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 021681 256 RSCYDEGKRTAETLTMDYHRG 276 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~ 276 (309)
...|+.+|++.+.+++.++.+
T Consensus 145 ~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=130.03 Aligned_cols=165 Identities=14% Similarity=0.045 Sum_probs=112.7
Q ss_pred cCCCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cc--------cccCC---CceEEEecccc-
Q 021681 112 IGRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LV--------HHFRN---PRFELIRHDVV- 174 (309)
Q Consensus 112 ~~~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~--------~~~~~---~~v~~~~~Dl~- 174 (309)
..++||++||||| +.+||.++++.|++.|++|++ .+.....+.. .. ..... .....+.+|+.
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 3478999999999 799999999999999999988 4432211000 00 00000 01223444441
Q ss_pred -------c--------------c----------ccCCCCEEEEcccCCCC--CC----CcCChhHHHHHHHHHHHHHHHH
Q 021681 175 -------E--------------P----------ILLEVDQIYHLACPASP--VH----YKYNPVKTIKTNVMGTLNMLGL 217 (309)
Q Consensus 175 -------~--------------~----------~~~~~D~Vih~A~~~~~--~~----~~~~~~~~~~~Nv~gt~~ll~~ 217 (309)
+ . .+..+|++|||||.... .. ..+++..++++|+.++..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 1 1 23469999999974321 11 1236788999999999999988
Q ss_pred HHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCce
Q 021681 218 AKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNT 289 (309)
Q Consensus 218 a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V 289 (309)
+.+. +.++|++||..... +.... ..|+.+|++.+.+.+.++.+ +||+++.|.||.|
T Consensus 164 ~~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v 227 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPL 227 (303)
T ss_pred HHHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCc
Confidence 7553 35899999965431 11112 36999999999999999875 3799999999999
Q ss_pred eCCC
Q 021681 290 YGPR 293 (309)
Q Consensus 290 ~Gp~ 293 (309)
-.+-
T Consensus 228 ~T~~ 231 (303)
T PLN02730 228 GSRA 231 (303)
T ss_pred cCch
Confidence 7763
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=133.64 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
..++|+|+||||+|+||++++++|+++|++|++++++.......... ....+..+..|+.++ .+.++|++|||
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 35789999999999999999999999999999998764332211111 112355677787765 35789999999
Q ss_pred ccCCCCCC-CcCChhHHHHHHHHHHHHHHHHHHH----cC----C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASPVH-YKYNPVKTIKTNVMGTLNMLGLAKR----VG----A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 188 A~~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~----~~----~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
||...... ..+++..++++|+.|+.++++++.+ .+ . .+|++|+.. . .+ ....
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~----------------~~-~~~~ 314 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-V----------------NP-AFSP 314 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-c----------------cC-CCch
Confidence 98643322 2235678899999999999998743 22 1 244444322 1 11 1124
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCcee
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~ 290 (309)
.|+.||++.+.+......+.++.+..+.||.+.
T Consensus 315 ~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~ 347 (406)
T PRK07424 315 LYELSKRALGDLVTLRRLDAPCVVRKLILGPFK 347 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCc
Confidence 699999999998654334456667777776654
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=123.67 Aligned_cols=158 Identities=22% Similarity=0.208 Sum_probs=121.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc--cccccccCCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
...||++++|||.|+||.++.++|+++|..+.+++.+.+..+ .++........+-++++|+++. .+
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999998888876554432 2234455667888999999875 34
Q ss_pred CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHH----HHH-cCC---cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGL----AKR-VGA---KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~----a~~-~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|++||+||+.. +.+++.++.+|+.|..+=..+ ..+ .|. -+|.+||..-.
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL---------------- 141 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL---------------- 141 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc----------------
Confidence 56999999998644 567999999999886664444 433 332 59999997644
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH-----hcCCcEEEEEeCcee
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHR-----GAGVEVRIARIFNTY 290 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~-----~~gi~~~ivRp~~V~ 290 (309)
+|......|+.||+..-.+.++++. +.|+++..+.||.+-
T Consensus 142 ~P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~ 186 (261)
T KOG4169|consen 142 DPMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR 186 (261)
T ss_pred CccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch
Confidence 4555567899999999999988653 359999999999763
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=123.02 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc--------------C
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--------------L 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~--------------~ 179 (309)
..+|.|||||+..+.|..|+++|.++|..|.+-.....+. +.+......++...+..|++++.. .
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~ 105 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED 105 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence 4567899999999999999999999999998877433322 223333336788888999988721 2
Q ss_pred CCCEEEEcccCCCCCCCc-----CChhHHHHHHHHHHHHHHHHH----HHcCCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK-----YNPVKTIKTNVMGTLNMLGLA----KRVGAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~-----~~~~~~~~~Nv~gt~~ll~~a----~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+.-.||||||+....... +++..++++|..|+..+.++. ++...|+|++||..--
T Consensus 106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR---------------- 169 (322)
T KOG1610|consen 106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR---------------- 169 (322)
T ss_pred cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC----------------
Confidence 477999999965433322 367889999999998887765 5566799999997632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCc
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFN 288 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~ 288 (309)
.+.....+|+.||.+.|.+...+.++ +|+.+.++-||.
T Consensus 170 ~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~ 210 (322)
T KOG1610|consen 170 VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF 210 (322)
T ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc
Confidence 34444578999999999999888766 599999999993
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=117.89 Aligned_cols=175 Identities=17% Similarity=0.068 Sum_probs=121.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
.+.|.++||||+.+||++++..|.+.|++|.+.+++....++....+-....-....+|+.++ .+..+
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p 91 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP 91 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence 355689999999999999999999999999999987664443333222212233456666554 23469
Q ss_pred CEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHc-------CCcEEEEecc-ccccCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRV-------GAKFLLTSTS-EVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 182 D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~-------~~r~v~iSS~-~vy~~~~~~~~~E~~~~~ 249 (309)
+++++|||+..... ..++|+..+.+|+.|+..+.+++.+. +.++|.+||. +-.|+-.
T Consensus 92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G----------- 160 (256)
T KOG1200|consen 92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG----------- 160 (256)
T ss_pred cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccccc-----------
Confidence 99999999854332 34579999999999999999987654 1279999995 3332211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCCCCCCCcHHHHH
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCLDDGRVVSNF 305 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~ 305 (309)
...|+.+|.-.-.+.+..+++ .+|+++++-||+|-.|-....+..++..+
T Consensus 161 ------QtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~~v~~ki 213 (256)
T KOG1200|consen 161 ------QTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPPKVLDKI 213 (256)
T ss_pred ------chhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCHHHHHHH
Confidence 134777776655555554444 48999999999998884333344444444
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=116.94 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=119.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
..|-+||||||+.+||.+|+++|++.|.+|++..|+.....+... ..+.+.-..+|+.|.. ....
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCch
Confidence 456799999999999999999999999999999986554433322 2344555666665542 2358
Q ss_pred CEEEEcccCCCCCCCc------CChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~------~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+++|||||+.....+. ++....+.+|+.++..|..+..++ .+.+|.+||.-.+
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf---------------- 143 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF---------------- 143 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc----------------
Confidence 9999999986555443 223567899999999998887543 2479999998766
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.|....-.|+.||++...+...+..+ .+++++-+-|+.|-.+
T Consensus 144 vPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 144 VPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 34444457999999998887766433 4799999999998875
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=121.21 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=118.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-cccccccc-CC--CceEEEeccccc-c------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF-RN--PRFELIRHDVVE-P------------ 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~-~~--~~v~~~~~Dl~~-~------------ 176 (309)
.++|+++||||+++||.+++++|++.|+.|+++.+..... .+...... .. ..+.....|+++ .
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988887754331 11111110 11 356667788886 3
Q ss_pred ccCCCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+.++|++|||||..... . ..+.++..+++|+.|...+.+++.+.-. ++|++||.... ...
T Consensus 83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~----------- 150 (251)
T COG1028 83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP----------- 150 (251)
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC-----------
Confidence 234599999999975431 2 1236788999999999998886554444 89999997654 211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.. ...|+.||++.+.+.+.++.+ .|++++.+.||.+-.+
T Consensus 151 ---~~-~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 151 ---PG-QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ---CC-cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 00 368999999999999999855 5899999999965543
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=119.05 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=117.3
Q ss_pred CCeEEEEcC-CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-------------ccCCC
Q 021681 116 RLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------------ILLEV 181 (309)
Q Consensus 116 ~k~VlITGa-tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-------------~~~~~ 181 (309)
.|.|||||+ .|+||.+|+++|.++|+.|++..|..+...+.. .+..+...+.|+.++ -....
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~----~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkl 82 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA----IQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKL 82 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH----HhhCCeeEEeccCChHHHHHHHHHHhhCCCCce
Confidence 458999987 799999999999999999999988654433222 123466677777665 12358
Q ss_pred CEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|++|||||........+ ..+.+|++|+.|..++.++.. +.+..+|++.|..+| -|.
T Consensus 83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~----------------vpf 146 (289)
T KOG1209|consen 83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV----------------VPF 146 (289)
T ss_pred EEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE----------------ecc
Confidence 99999999754443222 457789999999999888864 444589999998877 344
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYG 291 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~G 291 (309)
.-.+.|.+||++..++.+-+.-+ +|++++.+-+|.|-.
T Consensus 147 pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 147 PFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred chhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 44578999999999988777544 488998888887754
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-13 Score=120.17 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCC------CCc-ccccc--------c------c--cC--CCc
Q 021681 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFF------TGR-KDNLV--------H------H--FR--NPR 165 (309)
Q Consensus 113 ~~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~------~~~-~~~~~--------~------~--~~--~~~ 165 (309)
.+++|+++||||+ .+||++++++|+++|++|++.++.. +.. .+... . . +. ...
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~ 84 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT 84 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence 4678999999995 9999999999999999999876421 000 00000 0 0 00 001
Q ss_pred eEEEeccccc--------------------cccCCCCEEEEcccCCCC--CCC----cCChhHHHHHHHHHHHHHHHHHH
Q 021681 166 FELIRHDVVE--------------------PILLEVDQIYHLACPASP--VHY----KYNPVKTIKTNVMGTLNMLGLAK 219 (309)
Q Consensus 166 v~~~~~Dl~~--------------------~~~~~~D~Vih~A~~~~~--~~~----~~~~~~~~~~Nv~gt~~ll~~a~ 219 (309)
.+-+..|+.+ ..+..+|++|||||.... ..+ .+++...+++|+.|+.++++++.
T Consensus 85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~ 164 (299)
T PRK06300 85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFG 164 (299)
T ss_pred CEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1112111111 123569999999985321 111 23578889999999999999886
Q ss_pred Hc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeC
Q 021681 220 RV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (309)
Q Consensus 220 ~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~G 291 (309)
+. +.++|++||..... +.... ..|+.+|++.+.+++.++.+ +||+++.|.||.+-.
T Consensus 165 p~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T 228 (299)
T PRK06300 165 PIMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLAS 228 (299)
T ss_pred HHhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccC
Confidence 53 34788898865431 11112 26999999999999999875 389999999999877
Q ss_pred CC
Q 021681 292 PR 293 (309)
Q Consensus 292 p~ 293 (309)
+-
T Consensus 229 ~~ 230 (299)
T PRK06300 229 RA 230 (299)
T ss_pred hh
Confidence 63
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=120.04 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=116.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
.+|-.+-|.|||||+|+.++.+|.+.|-+|++-+|........++-.-+...+-+...|+.|+ ..+..++|||+.
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLI 138 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLI 138 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEee
Confidence 456689999999999999999999999999999886443333332222335566666777666 556789999998
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
|- .++...-...++|+.+...|++.|++.|+ |+|++|+.++- ....+-|-.+|++.|
T Consensus 139 Gr----d~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan------------------v~s~Sr~LrsK~~gE 196 (391)
T KOG2865|consen 139 GR----DYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN------------------VKSPSRMLRSKAAGE 196 (391)
T ss_pred cc----ccccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc------------------ccChHHHHHhhhhhH
Confidence 73 11222223446999999999999999999 99999997621 223367999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
..+++.- -+.+|+||..+||..
T Consensus 197 ~aVrdaf----PeAtIirPa~iyG~e 218 (391)
T KOG2865|consen 197 EAVRDAF----PEATIIRPADIYGTE 218 (391)
T ss_pred HHHHhhC----Ccceeechhhhcccc
Confidence 9998742 457999999999954
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-14 Score=122.37 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=116.7
Q ss_pred cCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc-CCCCEEEEc
Q 021681 123 GGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL-LEVDQIYHL 187 (309)
Q Consensus 123 Gat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~-~~~D~Vih~ 187 (309)
|++ ++||.+++++|+++|++|++.+++.......+.+.......+++.+|+.++ .+ ..+|++|||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN 80 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence 666 999999999999999999999987664322232222222244689999776 35 679999999
Q ss_pred ccCCCC----CCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASP----VHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 188 A~~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
++.... ..+. +++...+++|+.+...+++.+.+. +.++|++||.... .+....
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~----------------~~~~~~ 144 (241)
T PF13561_consen 81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQ----------------RPMPGY 144 (241)
T ss_dssp EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGT----------------SBSTTT
T ss_pred ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhc----------------ccCccc
Confidence 987554 2221 256788999999999999988553 3479999997654 233344
Q ss_pred CHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 257 SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
..|+.+|++.+.+++.++.+ +||+++.|.||.+..+
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~ 184 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETP 184 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceecc
Confidence 68999999999999998855 5899999999999865
|
... |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=110.68 Aligned_cols=163 Identities=18% Similarity=0.093 Sum_probs=115.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC-CeEEE-EecCCCCcccccc-cccCCCceEEEecccccc------------c--c
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIV-IDNFFTGRKDNLV-HHFRNPRFELIRHDVVEP------------I--L 178 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~-i~r~~~~~~~~~~-~~~~~~~v~~~~~Dl~~~------------~--~ 178 (309)
.+.|+||||+.+||..|+++|++.. .++++ ..|+.+...+++. ....+.++.++..|+++. . .
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~ 82 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS 82 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence 3579999999999999999999864 45444 3444444322222 223578999999998765 1 3
Q ss_pred CCCCEEEEcccCCCCCCCcC-----ChhHHHHHHHHHHHHHHHHH----HHcC------------CcEEEEeccccccCC
Q 021681 179 LEVDQIYHLACPASPVHYKY-----NPVKTIKTNVMGTLNMLGLA----KRVG------------AKFLLTSTSEVYGDP 237 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~~a----~~~~------------~r~v~iSS~~vy~~~ 237 (309)
.++|++|+|||+..+..... .+...+++|..|+..+.+.+ ++.. +.+|++||...--+
T Consensus 83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~- 161 (249)
T KOG1611|consen 83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG- 161 (249)
T ss_pred CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC-
Confidence 56899999999865544332 35678999999998887764 2221 14888998643200
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeC
Q 021681 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYG 291 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~G 291 (309)
.....+...|.+||.+...+.+.++-+. ++-++.+.||+|-.
T Consensus 162 ------------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~T 206 (249)
T KOG1611|consen 162 ------------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQT 206 (249)
T ss_pred ------------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEc
Confidence 0234456889999999999999987653 68889999999965
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=114.55 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=105.5
Q ss_pred HHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc----CCCCEEEEcccCCCCCCCcCChhH
Q 021681 132 LVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL----LEVDQIYHLACPASPVHYKYNPVK 202 (309)
Q Consensus 132 l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~----~~~D~Vih~A~~~~~~~~~~~~~~ 202 (309)
++++|+++|++|++++|+..... ...++.+|+.+. .+ .++|+||||||... ..+++.
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~~ 66 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVEL 66 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHHH
Confidence 47899999999999998643211 123456777654 12 35899999998642 246788
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC-----------CCCCCCCCCCCHHHHHHHHHHH
Q 021681 203 TIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY-----------WGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 203 ~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~-----------~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
.+++|+.++..+++++.+. +.+||++||...|+.....+..|.. |....+....+.|+.+|.+.+.
T Consensus 67 ~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~ 146 (241)
T PRK12428 67 VARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALIL 146 (241)
T ss_pred hhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHH
Confidence 9999999999999998754 3489999999888633211111110 0000233455789999999999
Q ss_pred HHHHHH-Hh---cCCcEEEEEeCceeCCC
Q 021681 269 LTMDYH-RG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 269 ~v~~~a-~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+++.++ .+ .|+++++++||.+.++-
T Consensus 147 ~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 147 WTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred HHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 999888 43 58999999999999874
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=113.59 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=122.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEecccccc------------ccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
++|+||||+.+||.+++..+..+|++|+++.|..++..+...+ ......+.+..+|+.+- ....+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 5899999999999999999999999999999875544322221 11222355667777332 12348
Q ss_pred CEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
|.+|||||..-+.-+.+ ..+..+++|..|+.++++++... . .+|+++||..+. -
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~----------------~ 177 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM----------------L 177 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh----------------c
Confidence 99999999866655554 34678999999999999987433 1 179999996543 3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
++..++.|+.+|.+...++..+.++ +++.+...-|+.+..|+.
T Consensus 178 ~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGf 223 (331)
T KOG1210|consen 178 GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGF 223 (331)
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcc
Confidence 5566788999999998888887766 489999999999999873
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-13 Score=110.05 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=123.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc---CCCCE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL---LEVDQ 183 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~---~~~D~ 183 (309)
..+.|+.|++||+.-+||++++.+|.+.|.+|+++.|..........+. ...++.+..|+.+. .+ .-+|.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~--p~~I~Pi~~Dls~wea~~~~l~~v~pidg 80 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET--PSLIIPIVGDLSAWEALFKLLVPVFPIDG 80 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC--CcceeeeEecccHHHHHHHhhcccCchhh
Confidence 3467899999999999999999999999999999998544333222211 22367788888654 12 23899
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----CC--cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
++||||+...-.+. +..+..|++|+.+..++.+...+. ++ .+|.+||.+.. .++
T Consensus 81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~----------------R~~ 144 (245)
T KOG1207|consen 81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI----------------RPL 144 (245)
T ss_pred hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc----------------ccc
Confidence 99999975444333 356788999999999998884432 22 59999997643 355
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYG 291 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~G 291 (309)
...+.|+.+|++.+.+.+.++.+. +|++..+.|..|..
T Consensus 145 ~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT 185 (245)
T KOG1207|consen 145 DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMT 185 (245)
T ss_pred CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEe
Confidence 556889999999999999999885 59999999988864
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=116.18 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=88.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc------CC-CCEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL------LE-VDQIY 185 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~------~~-~D~Vi 185 (309)
+|+||||||++|++++++|+++|++|++++|+...... ..++.+..|+.|+ ++ .+ +|.||
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~--------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG--------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC--------CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 48999999999999999999999999999997653321 1333445555544 44 56 99999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
|+++... + ....+.+++++|++.|+ |||++||..++.. .+ .+.
T Consensus 73 ~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~--------------~~---------~~~ 116 (285)
T TIGR03649 73 LVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG--------------GP---------AMG 116 (285)
T ss_pred EeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC--------------Cc---------hHH
Confidence 9985311 1 12345689999999998 8999998654311 00 122
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
..|..++. ..+++++++||+.++++
T Consensus 117 ~~~~~l~~---~~gi~~tilRp~~f~~~ 141 (285)
T TIGR03649 117 QVHAHLDS---LGGVEYTVLRPTWFMEN 141 (285)
T ss_pred HHHHHHHh---ccCCCEEEEeccHHhhh
Confidence 23433322 14899999999988864
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=110.42 Aligned_cols=176 Identities=27% Similarity=0.330 Sum_probs=134.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc------CCCceEEEeccccccc-------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF------RNPRFELIRHDVVEPI-------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~------~~~~v~~~~~Dl~~~~-------~ 178 (309)
....|..||||-||.-|++|++-|+.+|++|..+.|....-. ..+.++. ....+.+--+|++|.. .
T Consensus 25 ~r~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ 104 (376)
T KOG1372|consen 25 FRPRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLIST 104 (376)
T ss_pred cccceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhc
Confidence 345578999999999999999999999999999887644322 1122221 1245667778998872 2
Q ss_pred CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC----CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
-+++-|+|+|+..+..-..+-++-+-++...||.+|+++.+..+ +||-..||+..||...+.|..|. .|+-
T Consensus 105 ikPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFy 179 (376)
T KOG1372|consen 105 IKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFY 179 (376)
T ss_pred cCchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCC
Confidence 46899999998766544444455566788899999999998775 48999999999999899999999 8999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
|.++|+.+|..+-.++-.|.+.+++-.+---+++--.|+
T Consensus 180 PRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPR 218 (376)
T KOG1372|consen 180 PRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPR 218 (376)
T ss_pred CCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCc
Confidence 999999999999888877776676655544444555554
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=104.02 Aligned_cols=169 Identities=15% Similarity=0.104 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..++|.++|.||||-.|+.+++++++.+. .|+++.|..... +.....+....+++-..|-......++|+.|++-|.
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d-~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD-PATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC-ccccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 35678999999999999999999999985 899888753111 111111111122222222233466789999999864
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.... ...+..+++.......++++|++.|+ .|+++||.++-. ...-.|-..|...|.-
T Consensus 94 TRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~------------------sSrFlY~k~KGEvE~~ 152 (238)
T KOG4039|consen 94 TRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADP------------------SSRFLYMKMKGEVERD 152 (238)
T ss_pred cccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCc------------------ccceeeeeccchhhhh
Confidence 3211 12334445666777788999999998 799999987531 2224688999999988
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHH
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFV 306 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i 306 (309)
+.++.- -+++|+|||.+.|.+...+.+.++.++.
T Consensus 153 v~eL~F---~~~~i~RPG~ll~~R~esr~geflg~~~ 186 (238)
T KOG4039|consen 153 VIELDF---KHIIILRPGPLLGERTESRQGEFLGNLT 186 (238)
T ss_pred hhhccc---cEEEEecCcceecccccccccchhhhee
Confidence 877532 3589999999999998877777765543
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=135.37 Aligned_cols=162 Identities=19% Similarity=0.103 Sum_probs=119.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcc--------------------------------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRK-------------------------------------- 154 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~-------------------------------------- 154 (309)
.+++++|||||+++||.+++++|+++ |++|++++|+.....
T Consensus 1995 ~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813 1995 NSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence 36789999999999999999999998 589999998721000
Q ss_pred -----cc----cccc-cCCCceEEEeccccccc-----------cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHH
Q 021681 155 -----DN----LVHH-FRNPRFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVM 209 (309)
Q Consensus 155 -----~~----~~~~-~~~~~v~~~~~Dl~~~~-----------~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~ 209 (309)
.+ +... .....+.++.+|++|.. ...+|.||||||....... .+++...+++|+.
T Consensus 2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 00 0000 01235678889998861 1258999999997543332 2367889999999
Q ss_pred HHHHHHHHHHHcCC-cEEEEecccc-ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEe
Q 021681 210 GTLNMLGLAKRVGA-KFLLTSTSEV-YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA-GVEVRIARI 286 (309)
Q Consensus 210 gt~~ll~~a~~~~~-r~v~iSS~~v-y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ivRp 286 (309)
|+.++++++..... +||++||... ||. .....|+.+|...+.+++.++.+. +++++.+.+
T Consensus 2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~-----------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~w 2217 (2582)
T TIGR02813 2155 GLLSLLAALNAENIKLLALFSSAAGFYGN-----------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNW 2217 (2582)
T ss_pred HHHHHHHHHHHhCCCeEEEEechhhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEEC
Confidence 99999999977654 7999999754 432 123579999999999998887765 689999999
Q ss_pred CceeCC
Q 021681 287 FNTYGP 292 (309)
Q Consensus 287 ~~V~Gp 292 (309)
|.+-|+
T Consensus 2218 G~wdtg 2223 (2582)
T TIGR02813 2218 GPWDGG 2223 (2582)
T ss_pred CeecCC
Confidence 887654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-11 Score=96.46 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=111.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+|.|.||||.+|+.|+++.+++|++|+++.|+..+.... ..+.+++.|+.|. .+.+.|+||..-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 6899999999999999999999999999999976544321 3455677777665 567899999887532
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccc-ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV-YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~v-y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.+ .+. .........|++..+..++ |++.++.++- |-......+ + .|..|.-.|..++..+|.+
T Consensus 74 ~~----~~~----~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLv--D-----~p~fP~ey~~~A~~~ae~L 138 (211)
T COG2910 74 AS----DND----ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLV--D-----TPDFPAEYKPEALAQAEFL 138 (211)
T ss_pred CC----Chh----HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceee--c-----CCCCchhHHHHHHHHHHHH
Confidence 21 111 1334446778888888787 9999988653 322221111 1 3555556788888888865
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
..+..+..++|+.+.|...|-|++.
T Consensus 139 -~~Lr~~~~l~WTfvSPaa~f~PGer 163 (211)
T COG2910 139 -DSLRAEKSLDWTFVSPAAFFEPGER 163 (211)
T ss_pred -HHHhhccCcceEEeCcHHhcCCccc
Confidence 4444556699999999999999763
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=110.80 Aligned_cols=164 Identities=20% Similarity=0.162 Sum_probs=103.0
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccC----C
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILL----E 180 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~----~ 180 (309)
....+.++|+|+||||.+|+-+++.|+++|+.|.++.|+..+..........+.....+..|.+.+ ... .
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccc
Confidence 334566799999999999999999999999999999987655444333121223333333333222 111 2
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
..+++-+++ ..+..+ +-..-.++...|+.|++++|+..|+ |++++|+...-.. +..+| ...-...+
T Consensus 154 ~~~v~~~~g--grp~~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~------~~~~~----~~~~~~~~ 220 (411)
T KOG1203|consen 154 VVIVIKGAG--GRPEEE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKF------NQPPN----ILLLNGLV 220 (411)
T ss_pred ceeEEeccc--CCCCcc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCccc------CCCch----hhhhhhhh
Confidence 345666654 333322 1122235788999999999999998 8999988764311 00000 00001234
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
-.+|+.+|.+++ +.|++.++||++...-
T Consensus 221 ~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203|consen 221 LKAKLKAEKFLQ----DSGLPYTIIRPGGLEQ 248 (411)
T ss_pred hHHHHhHHHHHH----hcCCCcEEEecccccc
Confidence 466777777654 5799999999997654
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=104.07 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=114.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEE--EecCCCCcccccccccCCCceEEEecccccccc------------CC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIV--IDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL------------LE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~--i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~------------~~ 180 (309)
.++.+||||++.+||..++..+.+++.+... ..|.... .+.+..... ..+..+..|+++..+ .+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 5678999999999999999999988875433 3333222 222221112 344455566655521 24
Q ss_pred CCEEEEcccCCCCCCC-------cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY-------KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
-|+||||||...+... .+.|++.++.|+.+...+...+.+ .. ..+|++||.+..
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav------------- 149 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV------------- 149 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh-------------
Confidence 7999999997554431 235788999999999888777643 22 359999998765
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh-c-CCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG-A-GVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-~-gi~~~ivRp~~V~Gp 292 (309)
.|+..+..|+.+|++.+.+++.++.+ . ++++..++||.|=.+
T Consensus 150 ---~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 150 ---RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred ---ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence 57788899999999999999999865 3 889999999987554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=105.12 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=94.1
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCCCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 193 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~~~ 193 (309)
|+|+||||.+|+.+++.|++.+++|+++.|+..... ...+....++++..|..++ +++++|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~---~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDR---AQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHH---HHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhh---hhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 799999999999999999999999999999763221 1111223556778887655 6889999999886322
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS-EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD 272 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~-~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (309)
..-.....+++++|++.|++.+..||. ..+.. . ....|...+-..|...|+.+++
T Consensus 77 -----------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~--------~-----~~~~p~~~~~~~k~~ie~~l~~ 132 (233)
T PF05368_consen 77 -----------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDE--------S-----SGSEPEIPHFDQKAEIEEYLRE 132 (233)
T ss_dssp -----------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTT--------T-----TTSTTHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhhhhhhhHHHhhhccccceEEEEEecccccc--------c-----ccccccchhhhhhhhhhhhhhh
Confidence 123445678999999999954445653 33310 0 1111223344577777777654
Q ss_pred HHHhcCCcEEEEEeCceeC
Q 021681 273 YHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 273 ~a~~~gi~~~ivRp~~V~G 291 (309)
.+++++++|+|..+.
T Consensus 133 ----~~i~~t~i~~g~f~e 147 (233)
T PF05368_consen 133 ----SGIPYTIIRPGFFME 147 (233)
T ss_dssp ----CTSEBEEEEE-EEHH
T ss_pred ----ccccceeccccchhh
Confidence 489999999998655
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-12 Score=105.06 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=116.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
++...+||||.+++|...++.|.+.|..|.++|....+-.+...+. ..++.+...|++.+ .+..+|
T Consensus 8 kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel--g~~~vf~padvtsekdv~aala~ak~kfgrld 85 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL--GGKVVFTPADVTSEKDVRAALAKAKAKFGRLD 85 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh--CCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence 5668999999999999999999999999999987544333322222 24566778888766 345699
Q ss_pred EEEEcccCCCCCCC----------cCChhHHHHHHHHHHHHHHHHHHH---------cCCc--EEEEeccccccCCCCCC
Q 021681 183 QIYHLACPASPVHY----------KYNPVKTIKTNVMGTLNMLGLAKR---------VGAK--FLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~---------~~~r--~v~iSS~~vy~~~~~~~ 241 (309)
..+||||+...... -++....+++|+.||.|+++.... .|.| +|.+.|.++|...
T Consensus 86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq---- 161 (260)
T KOG1199|consen 86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQ---- 161 (260)
T ss_pred eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCc----
Confidence 99999997432221 125677899999999999887532 1234 7777888877432
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
-....|+.||.+.-.+..-++++ .||+++.+-||..-.|-
T Consensus 162 ------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpl 204 (260)
T KOG1199|consen 162 ------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPL 204 (260)
T ss_pred ------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChh
Confidence 22367999999877766555555 38999999998876664
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=97.47 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=101.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc--ccccccc--CCCceEEEeccccccc------------cCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++||||+|.||..+++.|++++. +|+++.|...... ......+ ....+.++.+|++++. ...
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999986 8888888732121 1111111 2468889999998861 235
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc-ccccCCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~-~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
++.|||+|+........+ ....++..-+.|+.+|.++...... .+|++||. +++|...
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~g---------------- 145 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPG---------------- 145 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TT----------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcc----------------
Confidence 889999998754333322 3566788899999999999987666 68888886 4555322
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~ 287 (309)
...|+.+....+.+++... ..|.++..|..+
T Consensus 146 -q~~YaaAN~~lda~a~~~~-~~g~~~~sI~wg 176 (181)
T PF08659_consen 146 -QSAYAAANAFLDALARQRR-SRGLPAVSINWG 176 (181)
T ss_dssp -BHHHHHHHHHHHHHHHHHH-HTTSEEEEEEE-
T ss_pred -hHhHHHHHHHHHHHHHHHH-hCCCCEEEEEcc
Confidence 2679999999999888754 468998888754
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-11 Score=104.76 Aligned_cols=163 Identities=15% Similarity=0.089 Sum_probs=118.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC--CCceEEEeccccccc---------cC--CCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI---------LL--EVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~---------~~--~~D 182 (309)
|+-++|||||.+||++.+++|+++|.+|+++.|...+......+..+ ...+..+..|.++.. +. ++-
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg 128 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG 128 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence 36799999999999999999999999999999986655433222221 245666666765553 22 366
Q ss_pred EEEEcccCCC--CCCCcC----ChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPAS--PVHYKY----NPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 183 ~Vih~A~~~~--~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
++|||+|... +..+-+ ...+.+.+|+.++..+.+..... + .-++++||.+-. .
T Consensus 129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~----------------~ 192 (312)
T KOG1014|consen 129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL----------------I 192 (312)
T ss_pred EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc----------------c
Confidence 8999999754 222222 34567889999988887775432 2 269999997633 4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..-.+.|+.+|...+.+...+..++ ||.+..+-|..|-++-.
T Consensus 193 p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~ 238 (312)
T KOG1014|consen 193 PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA 238 (312)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence 55556889999999999988887764 89999999999887643
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-10 Score=98.25 Aligned_cols=141 Identities=21% Similarity=0.200 Sum_probs=99.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+||||||||++|++++++|+++|++|+++.|+........ ..+++...|+.+. .+.++|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 57999999999999999999999999999998654433222 5677888888776 567899999988533
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
. . .. ...........+..+.+. .+. +++++|...+.. .....|..+|...|..+
T Consensus 75 ~-~---~~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~------------------~~~~~~~~~~~~~e~~l 129 (275)
T COG0702 75 D-G---SD--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA------------------ASPSALARAKAAVEAAL 129 (275)
T ss_pred c-c---cc--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC------------------CCccHHHHHHHHHHHHH
Confidence 2 1 11 122344444455555554 233 677777766421 22367999999999998
Q ss_pred HHHHHhcCCcEEEEEeCceeCC
Q 021681 271 MDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
.+ .|++++++|+...|..
T Consensus 130 ~~----sg~~~t~lr~~~~~~~ 147 (275)
T COG0702 130 RS----SGIPYTTLRRAAFYLG 147 (275)
T ss_pred Hh----cCCCeEEEecCeeeec
Confidence 65 5899999996666553
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=97.30 Aligned_cols=165 Identities=23% Similarity=0.342 Sum_probs=114.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc--CCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL--LEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~--~~~D~Vih~A 188 (309)
.+|||||+-|.+|..++..|-.+ |.+.+++...... ..... ... -++-.|+.|. .+ +.+|-+||..
T Consensus 45 PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP-p~~V~---~~G--PyIy~DILD~K~L~eIVVn~RIdWL~HfS 118 (366)
T KOG2774|consen 45 PRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP-PANVT---DVG--PYIYLDILDQKSLEEIVVNKRIDWLVHFS 118 (366)
T ss_pred CeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC-chhhc---ccC--CchhhhhhccccHHHhhcccccceeeeHH
Confidence 38999999999999999887665 5543333322111 11111 111 1334455543 11 3489999987
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
+...... +.+..-..++|+.|..|+++.+++++-++..-|+.++||... .+|- ++..--.|...||.||.-+|
T Consensus 119 ALLSAvG-E~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPT-----PdltIQRPRTIYGVSKVHAE 192 (366)
T KOG2774|consen 119 ALLSAVG-ETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPT-----PDLTIQRPRTIYGVSKVHAE 192 (366)
T ss_pred HHHHHhc-ccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCC-----CCeeeecCceeechhHHHHH
Confidence 6433222 233444567999999999999999998999999999998532 2221 12234567889999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
.+-+.+..++|+++..+|++.+...+
T Consensus 193 L~GEy~~hrFg~dfr~~rfPg~is~~ 218 (366)
T KOG2774|consen 193 LLGEYFNHRFGVDFRSMRFPGIISAT 218 (366)
T ss_pred HHHHHHHhhcCccceecccCcccccC
Confidence 99999988899999999998888753
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=101.57 Aligned_cols=169 Identities=13% Similarity=0.050 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccC-CCceEEEe-cccc--ccccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR-NPRFELIR-HDVV--EPILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~-~Dl~--~~~~~~~D~Vih~ 187 (309)
.++++|.|+|++|.||+.++..|+.++ .+++++|+. .......+... .....+.. .|.. .+.++++|+||++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 467899999999999999999998655 589999872 22221222111 11222221 1211 3678999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCC--CCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH--PQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~--~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
||... ....++...+..|+.++.++++.+++++. ++|+++|..+-....-. ...+. ..+.+...||.+-+
T Consensus 84 aG~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~-----sg~p~~~viG~g~L 156 (321)
T PTZ00325 84 AGVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKA-----GVYDPRKLFGVTTL 156 (321)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhc-----cCCChhheeechhH
Confidence 98532 22346788899999999999999999997 89999997653321110 00111 34455567777755
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
-.-++-..+++..++....++ +.|+|.
T Consensus 157 Ds~R~r~~la~~l~v~~~~V~-~~VlGe 183 (321)
T PTZ00325 157 DVVRARKFVAEALGMNPYDVN-VPVVGG 183 (321)
T ss_pred HHHHHHHHHHHHhCcChhheE-EEEEee
Confidence 555666666777899988888 788886
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=88.85 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..++|+++||||+|+||.++++.|++.|++|+++++......+...+. .....+..+.+|+.+. .+.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357889999999999999999999999999999997643221111111 0123456678888654 234
Q ss_pred CCCEEEEcccCCCCCC-CcC-ChhHHHHHHHHHHHHHHHHH----HHcC--------CcEEEEecccc
Q 021681 180 EVDQIYHLACPASPVH-YKY-NPVKTIKTNVMGTLNMLGLA----KRVG--------AKFLLTSTSEV 233 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~~~-~~~~~~~~Nv~gt~~ll~~a----~~~~--------~r~v~iSS~~v 233 (309)
.+|++|||||...... +++ .....-.+|+.++....+.+ .+.+ .||..+||.++
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 6999999999654322 222 11111244555544443333 2322 27888888654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-08 Score=89.41 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=113.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC-CCceEEEe---ccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR-NPRFELIR---HDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~---~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|.|||++|.+|..++..|+..+. +++++|... ......++.. .....+.. .|-..+.++++|+|||+||.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4899999999999999999986654 799998765 2222222111 11112221 12224578999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
... ....+...+..|+..+.++++.+++++. .+++++|.-+-+... .... .......+.+...||.++.-.+.+
T Consensus 97 ~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~--i~t~-~~~~~s~~p~~~viG~~~LDs~Rl 171 (323)
T PLN00106 97 PRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVP--IAAE-VLKKAGVYDPKKLFGVTTLDVVRA 171 (323)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHH--HHHH-HHHHcCCCCcceEEEEecchHHHH
Confidence 433 2356788899999999999999999987 788888854321000 0000 000113455567889999888899
Q ss_pred HHHHHHhcCCcEEEEEeCceeCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
-..+++..+++...++- .|+|.
T Consensus 172 ~~~lA~~lgv~~~~V~~-~ViGe 193 (323)
T PLN00106 172 NTFVAEKKGLDPADVDV-PVVGG 193 (323)
T ss_pred HHHHHHHhCCChhheEE-EEEEe
Confidence 99999999999888864 45553
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=85.33 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=108.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc-cccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~-~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~ 196 (309)
..++.|+.||.|+++++.-...++.|..+.++..+.... .......-..+....+..+..+.++..++-+++-.
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggf----- 128 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGF----- 128 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCc-----
Confidence 578999999999999999999999999998875532211 11111112334445555666777888888888632
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHR 275 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~ 275 (309)
.+...+.++|=....+-.+++.+.|+ +|+|||-... |. -+.-+ ..|-.+|+.+|.-+..
T Consensus 129 -gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d~-~~--------------~~~i~-rGY~~gKR~AE~Ell~--- 188 (283)
T KOG4288|consen 129 -GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHDF-GL--------------PPLIP-RGYIEGKREAEAELLK--- 188 (283)
T ss_pred -cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhhc-CC--------------CCccc-hhhhccchHHHHHHHH---
Confidence 23345556777777778899999998 8999997532 11 12222 3799999999988766
Q ss_pred hcCCcEEEEEeCceeCCCC
Q 021681 276 GAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 276 ~~gi~~~ivRp~~V~Gp~~ 294 (309)
.++.+-+++|||.+||.+.
T Consensus 189 ~~~~rgiilRPGFiyg~R~ 207 (283)
T KOG4288|consen 189 KFRFRGIILRPGFIYGTRN 207 (283)
T ss_pred hcCCCceeeccceeecccc
Confidence 4568899999999999854
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=87.42 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=113.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCe-----EEEEecCCCCcccccc---cccC--CCceEEEecccccc---------
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDE-----VIVIDNFFTGRKDNLV---HHFR--NPRFELIRHDVVEP--------- 176 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~-----V~~i~r~~~~~~~~~~---~~~~--~~~v~~~~~Dl~~~--------- 176 (309)
.|.++|||++++||.+|+.+|++...+ +++..|+..+.++... +... ...++++..|+++-
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 578999999999999999999987653 4445555444333322 2222 34678888888654
Q ss_pred ---ccCCCCEEEEcccCCCCCCC-------------------------------cCChhHHHHHHHHHHHHHHHHHHHcC
Q 021681 177 ---ILLEVDQIYHLACPASPVHY-------------------------------KYNPVKTIKTNVMGTLNMLGLAKRVG 222 (309)
Q Consensus 177 ---~~~~~D~Vih~A~~~~~~~~-------------------------------~~~~~~~~~~Nv~gt~~ll~~a~~~~ 222 (309)
.+...|.|+-|||+...... .++....+++||.|..-+++.+...-
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 34569999999996543321 23456789999999999888765432
Q ss_pred -----CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeC
Q 021681 223 -----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYG 291 (309)
Q Consensus 223 -----~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~G 291 (309)
..+|++||..+-... -.-|+. .......+|..||++.+.+--+..++ .|+...++.||....
T Consensus 163 ~~~~~~~lvwtSS~~a~kk~---lsleD~----q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMARKKN---LSLEDF----QHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred hcCCCCeEEEEeeccccccc---CCHHHH----hhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 279999996543211 111221 23344567999999998876555443 268888888886544
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=85.15 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=113.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCC--cccccccccCC-----CceEEEeccccccccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRN-----PRFELIRHDVVEPILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~--~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D 182 (309)
++|.|+|++|.+|..++..|+..+. +++++|..... ......+.... ..+.+. . -..+.++++|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~-~~~~~~~daD 80 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D-DPNVAFKDAD 80 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c-CcHHHhCCCC
Confidence 5899999999999999999998764 68888874332 22222222111 123332 2 2245788999
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEecc-cc--ccCCCCCCCCCCCCCCCCC-CCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTSTS-EV--YGDPLEHPQKETYWGNVNP-IGE 255 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS~-~v--y~~~~~~~~~E~~~~~~~~-~~~ 255 (309)
+||.+||.... ...+....+..|+.-...+.+..++.+ . .++.+|.- .+ |-- . ...+ +.+
T Consensus 81 ivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-----~------k~sg~~p~ 147 (322)
T cd01338 81 WALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA-----M------KNAPDIPP 147 (322)
T ss_pred EEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH-----H------HHcCCCCh
Confidence 99999985332 334667789999999999999998876 2 45555531 11 100 0 0022 445
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
...||.+++..+++...+++..+++...+|..+|||+.
T Consensus 148 ~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 148 DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 56899999999999999999999999999999999985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-07 Score=84.86 Aligned_cols=163 Identities=14% Similarity=0.088 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCCchhHHH--HHHHHHHCCCeEEEEecCCCCccc-----------ccccccC--CCceEEEecccccc--
Q 021681 114 RRRLRIVVTGGAGFVGSH--LVDKLIDRGDEVIVIDNFFTGRKD-----------NLVHHFR--NPRFELIRHDVVEP-- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~--l~~~Ll~~g~~V~~i~r~~~~~~~-----------~~~~~~~--~~~v~~~~~Dl~~~-- 176 (309)
..+|++|||||++.+|.+ +++.| +.|++|+++++....... ....... ...+..+.+|++++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 356899999999999999 89999 999998888743211110 1111111 22455778899775
Q ss_pred ----------ccCCCCEEEEcccCCCCCC-----------------CcC-------------------ChhHHHHHHHHH
Q 021681 177 ----------ILLEVDQIYHLACPASPVH-----------------YKY-------------------NPVKTIKTNVMG 210 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~-----------------~~~-------------------~~~~~~~~Nv~g 210 (309)
.+.++|++|||+|...... ... +.+....+.|+|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 2456999999998542211 000 001112344555
Q ss_pred HHHHHHH---HHH-----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CC
Q 021681 211 TLNMLGL---AKR-----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GV 279 (309)
Q Consensus 211 t~~ll~~---a~~-----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi 279 (309)
......+ ... .|++++-.|..+. |..| |.-..+..|.+|...|..++.++.+. |+
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~G~----------~~t~----p~Y~~g~mG~AKa~LE~~~r~La~~L~~~gi 263 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYIGP----------ELTH----PIYWDGTIGKAKKDLDRTALALNEKLAAKGG 263 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecCCc----------ceee----cccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5332222 222 2345555554321 1111 11112478999999999999998764 78
Q ss_pred cEEEEEeCceeC
Q 021681 280 EVRIARIFNTYG 291 (309)
Q Consensus 280 ~~~ivRp~~V~G 291 (309)
+++++-.+.+-.
T Consensus 264 ran~i~~g~~~T 275 (398)
T PRK13656 264 DAYVSVLKAVVT 275 (398)
T ss_pred EEEEEecCcccc
Confidence 898887776654
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=79.08 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=68.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~V 184 (309)
|+++||||+||+|. +++.|++.|++|++++|+...........-....+..+.+|+.++. ...+|.+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 58999999988775 9999999999999988754322111111111245777888887761 2346777
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCc-----EEEEecccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-----FLLTSTSEV 233 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r-----~v~iSS~~v 233 (309)
|+.+ ++.++.++..+|++.+++ ++++=.+.+
T Consensus 80 v~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 80 VAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred EEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 7664 445688999999998855 888776553
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-07 Score=81.31 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=73.2
Q ss_pred eEEEEcCCchhHHHHHHHHHHCC-------CeEEEEecCCCC--cccccccccCCC---ceEEEeccccccccCCCCEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTG--RKDNLVHHFRNP---RFELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g-------~~V~~i~r~~~~--~~~~~~~~~~~~---~v~~~~~Dl~~~~~~~~D~Vi 185 (309)
+|+||||+|++|++++..|+..+ .+|+++|+.... ......+..... .-++...+-..+.++++|+||
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 79999999999999999999844 489999985421 111111111000 001111122235678999999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEec
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS 230 (309)
|+||.... ...+....++.|+.-...+.+.++++. . .++.+|.
T Consensus 84 ~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 84 LVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99985432 234567889999999999999988874 2 4555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=73.00 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=105.6
Q ss_pred CCCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC-CceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~------------~ 177 (309)
.++||++||+|- ...|+..|++.|.+.|.++...+...+ .+..+.+..+. ...-++.+|+.++ .
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~-l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGER-LEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHH-HHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 468999999997 568999999999999999988876542 22222222111 1234678998766 2
Q ss_pred cCCCCEEEEcccCCCCCCC--------cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEE---eccccccCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY--------KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLT---STSEVYGDPLEHPQK 243 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~i---SS~~vy~~~~~~~~~ 243 (309)
..+.|.++|+.|....... .+++...+++-......|.++++.. |..++-. .|..
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r----------- 150 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER----------- 150 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee-----------
Confidence 3569999999886432221 1234555666666677777777653 3334433 3322
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCce
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNT 289 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V 289 (309)
.....+.++.+|++.|.-++.+|.+. ||+++.+.-|.|
T Consensus 151 --------~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPI 191 (259)
T COG0623 151 --------VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPI 191 (259)
T ss_pred --------ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccch
Confidence 23335789999999999999999774 799988877655
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=79.02 Aligned_cols=74 Identities=20% Similarity=0.489 Sum_probs=50.5
Q ss_pred CCCeEEEEcCC----------------chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec--cccc-
Q 021681 115 RRLRIVVTGGA----------------GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVE- 175 (309)
Q Consensus 115 ~~k~VlITGat----------------G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~--Dl~~- 175 (309)
+||+||||+|. ||+|++|++.|+++|++|++++........... ....+..+.. |+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~~ 78 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQDK 78 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHHH
Confidence 68899999886 999999999999999999999865332221111 0122233344 4332
Q ss_pred --ccc--CCCCEEEEcccCC
Q 021681 176 --PIL--LEVDQIYHLACPA 191 (309)
Q Consensus 176 --~~~--~~~D~Vih~A~~~ 191 (309)
..+ .++|+|||+||+.
T Consensus 79 l~~~~~~~~~D~VIH~AAvs 98 (229)
T PRK09620 79 MKSIITHEKVDAVIMAAAGS 98 (229)
T ss_pred HHHHhcccCCCEEEECcccc
Confidence 234 3689999999863
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.4e-06 Score=74.75 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=76.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHH-C--CCeEEEEecCCCCcccccccccCCC-ceEEEe--ccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLID-R--GDEVIVIDNFFTGRKDNLVHHFRNP-RFELIR--HDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~-~--g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~--~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|+|.||+|.+|++++..|.. . ++++++++++.. ......+..... ...+.. .+-..+.++++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 6899999999999999988855 2 357788887532 211111211112 122221 22223567889999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV 233 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~v 233 (309)
... ...+....+..|.....++++.+++.+. ++|.+.|.-+
T Consensus 80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 433 2345677889999999999999999986 6777777443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=74.33 Aligned_cols=68 Identities=18% Similarity=0.376 Sum_probs=45.4
Q ss_pred EEEE-cCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccc-------cccCCCCEEEEcccC
Q 021681 119 IVVT-GGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-------PILLEVDQIYHLACP 190 (309)
Q Consensus 119 VlIT-GatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-------~~~~~~D~Vih~A~~ 190 (309)
-.|| .+|||+|.+|+++|+++|++|+++++....... ....++++..+..+ ..+.++|+||||||+
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAv 91 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAV 91 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCcc
Confidence 3555 568899999999999999999999864321110 11234444433322 245679999999987
Q ss_pred CC
Q 021681 191 AS 192 (309)
Q Consensus 191 ~~ 192 (309)
..
T Consensus 92 sd 93 (229)
T PRK06732 92 SD 93 (229)
T ss_pred CC
Confidence 53
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-06 Score=78.43 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
+|+|+|.|+ |+||+.++..|++++ .+|++.+|...+....... ...+++....|+.+. ++++.|+|||++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~--~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL--IGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh--ccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 578999998 999999999999999 7999999864433222111 122666677776554 6678899999995
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+. . +.+++++|.+.|+.++=+|=.
T Consensus 78 ~~--------------~----~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 78 PF--------------V----DLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred ch--------------h----hHHHHHHHHHhCCCEEEcccC
Confidence 31 1 227889999998887776643
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=63.66 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=76.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc---cCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
|+|.|+|++|.+|++++..|...+. +++++|+..........+. ............-..+.++++|+||-+||..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 5899999999999999999998864 7999997644332222211 1111222222224455788999999999853
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.....+....++.|..-...+.+.+.+.+. .++.+|
T Consensus 81 --~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 --RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp --SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred --ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 233356778889999999999999998875 344444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.7e-05 Score=69.15 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=72.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCC--cccccccccCCC--c-eEEEeccccccccCCCCEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRNP--R-FELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~--~~~~~~~~~~~~--~-v~~~~~Dl~~~~~~~~D~Vi 185 (309)
+|.|+|++|.+|+.++..|...+. +++++|+.... ......+..... . ..++..+-..+.+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 589999999999999999987543 58888875432 222222211111 0 01111111245788999999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEec
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS 230 (309)
++||... ....+....+..|+.-...+.+...++. . .++.+|.
T Consensus 81 itAG~~~--~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPR--KEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 9998532 2234578889999999999999999984 4 4555553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.5e-05 Score=69.70 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=73.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCC--CCcccccccccCC-----CceEEEeccccccccCCCCE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFF--TGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQ 183 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~--~~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D~ 183 (309)
+|.||||+|.+|+.++..|+..+. +++++|+.. ........+.... ..+. +. +-..+.++++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-i~-~~~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-IT-TDPEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-Ee-cChHHHhCCCCE
Confidence 799999999999999999987653 488888764 2222222211111 1122 22 223567889999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEe
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTS 229 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iS 229 (309)
|||+||... ....+....+..|+.-...+.+.+++.+ . .++.+|
T Consensus 80 VVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 80 AILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999998533 3335677789999999999999998884 4 455554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.2e-05 Score=69.32 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=99.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCC-CceEEEe--c-cccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRN-PRFELIR--H-DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~--~-Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+|++|.+|+.++..|+..+ .+++++|.+ .......++... ....+.. . |-..+.++++|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 589999999999999999998887 378888876 223222222111 1122222 2 1224678999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccc-------cccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSE-------VYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~-------vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
. .....+-...++.|..-...+++..++.+. .++.+|--. .|.. ... ..+.+....|.
T Consensus 79 ~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~-----~~~------s~~p~~rviG~ 145 (310)
T cd01337 79 P--RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVL-----KKA------GVYDPKRLFGV 145 (310)
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHH-----HHh------cCCCHHHEEee
Confidence 3 223456778899999999999999988875 466665422 1110 000 01111112222
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+-.-.-++-..+++..+++...++ +.|+|..
T Consensus 146 ~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 146 TTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred echHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 223334455555666788877777 7788863
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=67.82 Aligned_cols=157 Identities=13% Similarity=0.044 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCchhHHHHHH-----HHHHCC----CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVD-----KLIDRG----DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~-----~Ll~~g----~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vi 185 (309)
+++..++-+++|+|+..|.. ++-+.+ |+|+++.|...+.+-.. ..+....+ -..||..+
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ritw-~el~~~Gi-----------p~sc~a~v 78 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARITW-PELDFPGI-----------PISCVAGV 78 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccccc-chhcCCCC-----------ceehHHHH
Confidence 44567888999999988766 333333 68888888654332211 11111111 01345555
Q ss_pred EcccCC--CCCCCcCChhHHHHHHHHH-----HHHHHHHHHHcCC---cEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPA--SPVHYKYNPVKTIKTNVMG-----TLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 186 h~A~~~--~~~~~~~~~~~~~~~Nv~g-----t~~ll~~a~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
+.+|.. .+.+ -|...|+-||.| |..|+++..+... .+|++|..++|-......++|+ .+...
T Consensus 79 na~g~n~l~P~r---RWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~-----~~~qg 150 (315)
T KOG3019|consen 79 NAVGNNALLPIR---RWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK-----IVHQG 150 (315)
T ss_pred hhhhhhccCchh---hcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc-----cccCC
Confidence 544421 1222 344455566655 6778888877753 5999999999988887888888 56666
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+..+..--..-|..++... ...+++++|.|.|.|.+
T Consensus 151 fd~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~g 186 (315)
T KOG3019|consen 151 FDILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKG 186 (315)
T ss_pred hHHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecC
Confidence 5666554445555544422 24999999999999953
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-05 Score=73.94 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccc-
Q 021681 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE- 175 (309)
Q Consensus 113 ~~~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~- 175 (309)
++++|+|+|||| +|.+|.+++++|.++|++|+++++..... . ...+. ..|+.+
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~---~-----~~~~~--~~dv~~~ 254 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP---T-----PAGVK--RIDVESA 254 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc---C-----CCCcE--EEccCCH
Confidence 368899999999 89999999999999999999998654211 0 01122 223322
Q ss_pred --------cccCCCCEEEEcccCC
Q 021681 176 --------PILLEVDQIYHLACPA 191 (309)
Q Consensus 176 --------~~~~~~D~Vih~A~~~ 191 (309)
..+.++|++|||||+.
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEccccc
Confidence 2346799999999974
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=67.53 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEeccccc-----cccCCCCEEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVE-----PILLEVDQIYH 186 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~-----~~~~~~D~Vih 186 (309)
..++++++|+||+|.+|+.+++.|++.|++|+++.|+..+... +.+.+. .....+...|..+ ..+.++|+||+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQK-AADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 3567899999999999999999999999999999886432221 111111 1112233333322 45678999999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.1e-05 Score=74.40 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHC-C-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR-G-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~-g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..++|+|+||||+|+||+.++++|+++ | .+++++.|....... +...+... ++. | .+..+.++|+|||+++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~-La~el~~~--~i~--~-l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE-LQAELGGG--KIL--S-LEEALPEADIVVWVASM 225 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH-HHHHhccc--cHH--h-HHHHHccCCEEEECCcC
Confidence 468899999999999999999999865 5 488888775332221 11111111 111 2 33567789999999974
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=64.92 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=73.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCC--CCcccccccccC-----CCceEEEe-ccccccccCCCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF--TGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~--~~~~~~~~~~~~-----~~~v~~~~-~Dl~~~~~~~~D~Vih 186 (309)
|+|.|+|++|.+|..++..|+..|. +|+++++.. ........+... .....+.- .| .+.+.++|+||-
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 5899999999999999999999986 599999843 222211111110 11122222 23 235899999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
++|.. .....+....++.|+.-...+++.+.+.+. .+|.+++
T Consensus 79 tag~p--~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 79 TAGVP--RKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred ecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99742 222334466778999999999998887753 5666665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=65.10 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC----CceEEEeccccccccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~----~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
..+++|.|+|+ |.+|..++..|+..+. +++++|++.........+.... ..+.+...| .+.++++|+||-.
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~--~~~~~~adivIit 80 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD--YSDCKDADLVVIT 80 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC--HHHhCCCCEEEEe
Confidence 45679999998 9999999999998886 7889988655443332222111 233333322 3458999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
||.... ...+....+..|..-...+++.+.+.+. .++.+|-
T Consensus 81 ag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 81 AGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred cCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 985322 3345677889999999999999988764 5555553
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.82 E-value=5e-05 Score=71.76 Aligned_cols=90 Identities=28% Similarity=0.315 Sum_probs=61.3
Q ss_pred EEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
|+|.|| |++|+.+++.|++++. +|++.+|+..+....... +...+++.+..|+.+. .+.++|+||||+++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK-LLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh-ccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999 9999999999999874 799999875543332221 1456888999988765 567899999999742
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~i 228 (309)
....++++|.+.|+++|-+
T Consensus 79 ------------------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 ------------------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp ------------------GHHHHHHHHHHHT-EEEES
T ss_pred ------------------hhHHHHHHHHHhCCCeecc
Confidence 1235778888887776663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=55.55 Aligned_cols=139 Identities=23% Similarity=0.195 Sum_probs=83.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccc--ccc----------cc--CCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--VEP----------IL--LEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl--~~~----------~~--~~~D 182 (309)
.+|+|.||-|-+|+++++.+.+++|-|.-+|........ .-.+++.+- ++. .+ +++|
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad---------~sI~V~~~~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD---------SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc---------ceEEecCCcchhHHHHHHHHHHHHhhcccccc
Confidence 489999999999999999999999998888754222111 111222211 111 12 3599
Q ss_pred EEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 183 ~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
.||+.||-.+-.. +..+-+-+++..|....--..++.++ |.-+-+.....+.+ +..
T Consensus 75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~----------------gTP 138 (236)
T KOG4022|consen 75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG----------------GTP 138 (236)
T ss_pred eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC----------------CCC
Confidence 9999987433222 12244445555555444434444443 22333333344442 223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh-cCCc
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG-AGVE 280 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~-~gi~ 280 (309)
..-.|+..|.+..++.+.++.+ .|++
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCCC
Confidence 3467999999999999998755 3544
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=55.30 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=56.7
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC--CCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
+|.|.||||++|+.|++.|+++.+ +++.+..........+..... ...-++.-.+...+.+.++|+||.|.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~----- 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP----- 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC-----
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc-----
Confidence 689999999999999999999654 555544333212222221111 111222222233445689999999973
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
-..+..+...+.+.|+++|=.|+..
T Consensus 76 -------------~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 76 -------------HGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp -------------HHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred -------------hhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 1123455666677777776666654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.75 E-value=8e-05 Score=65.20 Aligned_cols=68 Identities=16% Similarity=0.318 Sum_probs=43.4
Q ss_pred EEEEcC-CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-------ccCCCCEEEEcccC
Q 021681 119 IVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYHLACP 190 (309)
Q Consensus 119 VlITGa-tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-------~~~~~D~Vih~A~~ 190 (309)
=+||.. +|+||.+++++|+++|++|+++++... .... ....+++.+.+-.+. .+..+|++|||||+
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-----l~~~-~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv 90 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA-----LKPE-PHPNLSIREIETTKDLLITLKELVQEHDILIHSMAV 90 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh-----cccc-cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEe
Confidence 355554 899999999999999999998875211 1000 012344444322222 34569999999996
Q ss_pred CC
Q 021681 191 AS 192 (309)
Q Consensus 191 ~~ 192 (309)
..
T Consensus 91 ~d 92 (227)
T TIGR02114 91 SD 92 (227)
T ss_pred cc
Confidence 43
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=66.57 Aligned_cols=164 Identities=10% Similarity=0.034 Sum_probs=98.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-------CC--eEEEEecCCCCcccccccccCC-----CceEEEeccccccccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-------GD--EVIVIDNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-------g~--~V~~i~r~~~~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D 182 (309)
-+|.|+|++|.+|.+++..|+.. +. +++.++++.........++... ..+.+. .+ ..+.++++|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~~-~ye~~kdaD 178 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-ID-PYEVFQDAE 178 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-cC-CHHHhCcCC
Confidence 38999999999999999999987 54 7888887665554443332211 122212 22 346789999
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHH-cCC--cEEEEecc-ccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR-VGA--KFLLTSTS-EVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~--r~v~iSS~-~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
+||-.||.. .....+-...++.|+.-...+.+...+ .+. .+|.+|.- .+...- ...... .+. ....
T Consensus 179 iVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v---~~k~sg----~~~-~rVi 248 (444)
T PLN00112 179 WALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI---CLKNAP----NIP-AKNF 248 (444)
T ss_pred EEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH---HHHHcC----CCC-cceE
Confidence 999999853 333456778899999999999999998 454 56666641 110000 000000 000 0111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
=..+.+-.-++-..+++..+++...|+-..|+|.
T Consensus 249 GtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~Ge 282 (444)
T PLN00112 249 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGN 282 (444)
T ss_pred EeeccHHHHHHHHHHHHHhCcCHHHcccceEEec
Confidence 1122233333444445666888877766678886
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=64.00 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=75.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccC-----CCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
++|.|.|+ |.+|+.++..|+..| ++|++++++.........+... .....+...| .+.+.++|+||.++|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~--~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD--YSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC--HHHhCCCCEEEEccC
Confidence 37899995 999999999999998 5899999875544333222100 1122232222 235789999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
... ....+....++.|..-...+.+.+++.+. .++.+|.
T Consensus 78 ~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 78 APQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 532 23345677889999999999999998864 5556554
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=64.84 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
+++|+|.||||++|..|++.|.++++ ++..+.+..... +.+. +.. .++...|+.+..+.++|+||.+++..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g-~~l~--~~g--~~i~v~d~~~~~~~~vDvVf~A~g~g- 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG-KELS--FKG--KELKVEDLTTFDFSGVDIALFSAGGS- 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC-Ceee--eCC--ceeEEeeCCHHHHcCCCEEEECCChH-
Confidence 46899999999999999999999876 446665432211 1111 111 23444466555567899999888521
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
-+..+...+.+.|+++|=.|+..
T Consensus 75 -----------------~s~~~~~~~~~~G~~VIDlS~~~ 97 (334)
T PRK14874 75 -----------------VSKKYAPKAAAAGAVVIDNSSAF 97 (334)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCchh
Confidence 12344455555666666566643
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=65.12 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|||+||||. |+.|+++|.+.|++|++..+...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCC
Confidence 58999999999 99999999999999999887654
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.9e-05 Score=71.11 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++|+|+|+|+++ +|..+++.|++.|++|+++++............+....+.++..|..+....++|+||+++|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 4678999999877 999999999999999999987542211111111122245677778777777789999999985
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=61.16 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=95.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCC--cccccccccCC-----CceEEEeccccccccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRN-----PRFELIRHDVVEPILLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~--~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~ 181 (309)
.++|.|+|++|.+|+.++..|+..+. +++++|..... ......+.... ..+.+. .-..+.++++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~y~~~~da 81 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDPNVAFKDA 81 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cChHHHhCCC
Confidence 35899999999999999999987653 68888874322 22222221111 122222 2223578899
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEeccc-c--ccCCCCCCCCCCCCCCCC-CCC
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTSTSE-V--YGDPLEHPQKETYWGNVN-PIG 254 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS~~-v--y~~~~~~~~~E~~~~~~~-~~~ 254 (309)
|+||-+||... ....+....+..|..-...+.+..+++. . .++.+|.-. + |--. .. . -+.
T Consensus 82 DiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~-----k~------s~g~p 148 (326)
T PRK05442 82 DVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAM-----KN------APDLP 148 (326)
T ss_pred CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHH-----HH------cCCCC
Confidence 99999998532 2345677889999999999999999854 2 566665311 1 1000 00 1 011
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
+....|.+-+-.-++-..+++..+++...++-..|+|.
T Consensus 149 ~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~Ge 186 (326)
T PRK05442 149 AENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGN 186 (326)
T ss_pred HHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEEC
Confidence 11122223334444444556667888777776566775
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.3e-05 Score=59.67 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..++++++|.|+ |.+|+.++..|.+.|.+ |+++.|...+. +.+.+.+....+..+..+-....+.++|+||++.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra-~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERA-EALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHH-HHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 457889999996 88999999999999985 99988864433 233333345567777777777778899999999853
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.63 E-value=3.5e-05 Score=72.59 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec-cccc
Q 021681 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH-DVVE 175 (309)
Q Consensus 113 ~~~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~-Dl~~ 175 (309)
.++||+|+|||| +|.+|.++++.|..+|++|+++.+....... .. ...+++... |+.+
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~---~~--~~~~~v~~~~~~~~ 256 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTP---PG--VKSIKVSTAEEMLE 256 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCC---CC--cEEEEeccHHHHHH
Confidence 367899999999 3579999999999999999998854322110 00 012222222 1212
Q ss_pred ----cccCCCCEEEEcccCCCCCCCcC---C---hhHHHHHHHHHHHHHHHHHHHcC
Q 021681 176 ----PILLEVDQIYHLACPASPVHYKY---N---PVKTIKTNVMGTLNMLGLAKRVG 222 (309)
Q Consensus 176 ----~~~~~~D~Vih~A~~~~~~~~~~---~---~~~~~~~Nv~gt~~ll~~a~~~~ 222 (309)
....++|++|+|||+........ . ....+.+|+.-+-.+++..++..
T Consensus 257 ~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 257 AALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred HHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 23346899999999753222111 0 01234467777778888777643
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=60.10 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=43.3
Q ss_pred CCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--
Q 021681 115 RRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 115 ~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-- 176 (309)
+||+||||+| ||-+|.+|++.+..+|++|+++.....-. ....++.+..+-.++
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--------~p~~~~~i~v~sa~em~ 73 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--------PPPGVKVIRVESAEEML 73 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS------------TTEEEEE-SSHHHHH
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--------ccccceEEEecchhhhh
Confidence 4677777765 79999999999999999999998642111 123556666544333
Q ss_pred -----ccCCCCEEEEcccCC
Q 021681 177 -----ILLEVDQIYHLACPA 191 (309)
Q Consensus 177 -----~~~~~D~Vih~A~~~ 191 (309)
.+.+.|++||+|++.
T Consensus 74 ~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 74 EAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHHGGGGSEEEE-SB--
T ss_pred hhhccccCcceeEEEecchh
Confidence 456789999999863
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=60.56 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=74.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC-CceEEEe--cc-ccccccCCCCEEEEcccCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN-PRFELIR--HD-VVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~--~D-l~~~~~~~~D~Vih~A~~~ 191 (309)
+|.|+|++|.+|+.++..|+..+. +++++|... ......++... ....+.. .| -..+.++++|+||-+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 588999999999999999988874 788888765 22222222111 1122332 11 2246889999999999853
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
. ....+....+..|+.-...+.+...+.+. .++.+|-
T Consensus 79 ~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 79 R--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred C--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 2 23345677889999999999999988864 4555554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00087 Score=61.75 Aligned_cols=161 Identities=15% Similarity=0.084 Sum_probs=96.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCC--cccccccccCC-----CceEEEeccccccccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRN-----PRFELIRHDVVEPILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~--~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D 182 (309)
.+|.|+|++|++|+.++..|+..+. +++++|..... ......+.... ..+.+ ..+ ..+.++++|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~~-~~~~~~daD 81 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TTD-PEEAFKDVD 81 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ecC-hHHHhCCCC
Confidence 3899999999999999999988873 68888875321 22222221111 11222 221 235788999
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEecc-cc--ccCCCCCCCCCCCCCCCC-CCCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTS-EV--YGDPLEHPQKETYWGNVN-PIGE 255 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS~-~v--y~~~~~~~~~E~~~~~~~-~~~~ 255 (309)
+||.+||.. .....+....+..|+.-...+.+.+++.+. .++.+|-- .+ |-- ... . -+.+
T Consensus 82 vVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~-----~k~------s~g~p~ 148 (323)
T TIGR01759 82 AALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA-----SKN------APDIPP 148 (323)
T ss_pred EEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH-----HHH------cCCCCH
Confidence 999999853 233456778899999999999999988853 35555431 01 100 000 1 1111
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
....|.+.+-.-++-..+++..+++...++-..|+|.
T Consensus 149 ~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~Ge 185 (323)
T TIGR01759 149 KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGN 185 (323)
T ss_pred HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEec
Confidence 1122223444444444456667888887776677775
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00057 Score=64.38 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccc---cCCCce-EEEeccccccccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHH---FRNPRF-ELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~---~~~~~v-~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.+.|+|.|.||||++|.+|++.|+++ ..+|..+.+.... .+.+... +..... ++. ++....+.++|+||.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa-G~~i~~~~~~l~~~~~~~~~--~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA-GQSFGSVFPHLITQDLPNLV--AVKDADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc-CCCchhhCccccCcccccee--cCCHHHhcCCCEEEEcC
Confidence 46679999999999999999999998 4588887764221 1111111 010111 111 22223357899999987
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
+. ....+++..+ +.++++|-.|+..-+..
T Consensus 113 p~------------------~~s~~i~~~~-~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 113 PH------------------GTTQEIIKAL-PKDLKIVDLSADFRLRD 141 (381)
T ss_pred CH------------------HHHHHHHHHH-hCCCEEEEcCchhccCC
Confidence 41 1345566665 45678999999876543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=60.60 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=76.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC-----CceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
++|.|+|+ |.||+.++..|+.++. +++++|...........+.... .... +..|-..+.+++.|+|+-.||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVK-ITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceE-EecCCChhhhcCCCEEEEeCC
Confidence 47999999 9999999999987763 8999998744444333332211 1122 222222567899999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
....+ ...-...++.|..-...+.+...+.+. -++++-|
T Consensus 79 ~prKp--GmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VPRKP--GMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 54333 345677889999999999999988875 3444444
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=55.08 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=57.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHH-CCCeEEEE-ecCCCCc-ccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLID-RGDEVIVI-DNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i-~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
|+|.|.|++|-+|+.+++.+.+ .+.++... ++..... .....+........+...|-.+..+..+|+||.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT----- 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT----- 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-----
Confidence 5899999999999999999999 45676554 4433111 12222211111222222244455666699999885
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+-..+...++.|.++++.+|.-+|.
T Consensus 76 -------------~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 76 -------------NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp --------------HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred -------------ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 3344567788888888777765554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=63.85 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc------------------------cccccccCCCceE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------------DNLVHHFRNPRFE 167 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~------------------------~~~~~~~~~~~v~ 167 (309)
.++.++|+|.|+ |++|+.++..|++.|. +++++|.+.-... +.+.+......++
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 356678999996 8999999999999998 8999887531110 0011111223445
Q ss_pred EEeccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 168 LIRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 168 ~~~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
.+..+++. +.+.+.|+||.+.. + ...-..+.++|.+.++.+|+.++.+.||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D---------n--------~~~r~~ln~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATD---------N--------FETRFIVNDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCC---------C--------HHHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence 55555543 35678999998862 2 22233566888888889999887776653
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00087 Score=64.08 Aligned_cols=164 Identities=11% Similarity=0.036 Sum_probs=93.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHC---CC----eEEEEecC--CCCcccccccccCC-----CceEEEeccccccccCCCCE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDR---GD----EVIVIDNF--FTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQ 183 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~---g~----~V~~i~r~--~~~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D~ 183 (309)
+|+||||+|.||.+|+-.|+.= |. .++++|.. .........++... ..+.+. +-..+.++++|+
T Consensus 125 ~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~~ea~~daDv 202 (452)
T cd05295 125 QVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDLDVAFKDAHV 202 (452)
T ss_pred EEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECCHHHhCCCCE
Confidence 7999999999999999888762 42 34555542 11122222211110 123333 223568899999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEeccccccCCCCCCCCCCCCCCCC-CCCCCCHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETYWGNVN-PIGERSCY 259 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~~-~~~~~~~Y 259 (309)
||-.||.. .....+-...++.|+.-...+.+...+.+. +++.+.|.-+--...- .... . .+.+...-
T Consensus 203 vIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i-~~k~------apgiP~~rVi 273 (452)
T cd05295 203 IVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI-LIKY------APSIPRKNII 273 (452)
T ss_pred EEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH-HHHH------cCCCCHHHEE
Confidence 99999843 333456777899999999999999988763 6777776322000000 0000 1 11111223
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
+.+.....++...+++..+++...|+-..|+|.
T Consensus 274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGe 306 (452)
T cd05295 274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGN 306 (452)
T ss_pred EecchHHHHHHHHHHHHhCcCHHHceeeEEEEc
Confidence 333344444445556666777777766667665
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00054 Score=63.52 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc------------------------cccccccCCCceE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------------DNLVHHFRNPRFE 167 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~------------------------~~~~~~~~~~~v~ 167 (309)
..+.++|+|.|+ |.+|+++++.|++.|. +++++|++.-... +.+.+......++
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 356679999995 7899999999999997 8888887631110 0111111233455
Q ss_pred EEecccc----ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 168 LIRHDVV----EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 168 ~~~~Dl~----~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
.+..|++ ++.+.++|+||.+.. ++. .-..+-++|.+.++.+|+.+..+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D---------~~~--------~r~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATD---------NFD--------TRLLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCC---------CHH--------HHHHHHHHHHHcCCCEEEEEecccEE
Confidence 5555654 335678999998872 221 12235577888888888888766655
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=61.06 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=58.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
+++|.|+||||++|..|++.|.++++ ++..+... ....+.+. +....+++...|. ..+.++|+||-+++.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~--~~~~~l~~~~~~~--~~~~~vD~vFla~p~-- 76 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP--FAGKNLRVREVDS--FDFSQVQLAFFAAGA-- 76 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec--cCCcceEEeeCCh--HHhcCCCEEEEcCCH--
Confidence 36899999999999999999998765 33344322 11111111 1222333333332 235789999998731
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. -...++..+.+.|+++|=.|+..-+
T Consensus 77 --------~--------~s~~~v~~~~~~G~~VIDlS~~fR~ 102 (336)
T PRK05671 77 --------A--------VSRSFAEKARAAGCSVIDLSGALPS 102 (336)
T ss_pred --------H--------HHHHHHHHHHHCCCeEEECchhhcC
Confidence 0 1223667777778888888876643
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=58.86 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=74.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC----CceEEEe-ccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIR-HDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~----~~v~~~~-~Dl~~~~~~~~D~Vih~A~ 189 (309)
++|.|+|+ |.+|..++..|+..+- +++++|.+.........+.... ....+.. .|.. .++++|+||-+||
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCC
Confidence 48999996 9999999999988764 7888887654333332221111 1113332 3332 4899999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.... ...+-...+..|..-...+.+.+.+.+. .++.+|.
T Consensus 81 ~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 81 ARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 5332 2345667789999999999999988864 4555553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0028 Score=57.94 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=72.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC-----CCceEEEe-ccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dl~~~~~~~~D~Vih~A 188 (309)
+|+|.|.|+ |.+|..++..++..|. +|+++|++.........+... .....+.. .|. +.++++|+||.++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence 479999998 9999999999998865 899999865443222211100 11112221 232 3578999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
+.. .....+....+.-|+.-...+++.+.+... .+|.++.
T Consensus 79 ~~p--~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 79 GVP--RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 742 223334556677888888888888877754 4555543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=51.94 Aligned_cols=102 Identities=21% Similarity=0.332 Sum_probs=65.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEecc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRHD 172 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~D 172 (309)
.++|+|.| .|.+|+.+++.|...|. +++++|...-...+. +.+......++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 35899999 58999999999999997 788888642221111 0111123345555555
Q ss_pred ccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 173 VVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 173 l~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+.+ ..++++|+||.+.. |...-..+.+.|++.+..+|..++.+.+|
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVD-----------------SLAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESS-----------------SHHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred cccccccccccCCCEEEEecC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 532 35568999999872 22233456778888888888888766554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0046 Score=56.94 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCccccccccc-----CCCceEEEeccccccccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~-----~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+.++|.|+|| |.+|..++..|+..| .+++++|.+.........+.. ......+...+-. +.+.++|+||.+|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECC
Confidence 4568999997 999999999999888 688888876543322211110 0112222221212 3779999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
|.... ........+..|..-...+++.+.+.+. .++++|.
T Consensus 82 g~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 75332 2344566788899888888888888764 4566554
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=50.20 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=64.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEecccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRHDVV 174 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~Dl~ 174 (309)
+|+|.|+ |.+|+++++.|++.|. +++++|...-...+. +.+......++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4788995 9999999999999997 788887542211110 111111233444444443
Q ss_pred c----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 175 E----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 175 ~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. ..+.++|+||.+.. |......+.+.|++.++.++..++...+
T Consensus 80 ~~~~~~~~~~~diVi~~~d-----------------~~~~~~~l~~~~~~~~i~~i~~~~~g~~ 126 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAID-----------------NIAVRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred hhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCCCcE
Confidence 3 34678999999873 2233456778899988888888886544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0037 Score=57.28 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=73.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCC----CceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~----~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|.|+ |.+|..++..|+..| .+|++++++.........+.... ....+...|. +.+.++|+||.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 47999997 999999999999998 58999998654333222111110 1223333333 457899999999974
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
. .....+.......|+.-...+++.+.+.+. .++.++
T Consensus 78 ~--~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 78 N--QKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3 223345667788999999999999888764 444444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=59.95 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=57.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccccc--------CC--CceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF--------RN--PRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~--------~~--~~v~~~~~Dl~~~~~~~~D~V 184 (309)
+++|.|+||+|++|+.|++.|+++.. +++.+.+............. .. ..+.+...| .+.+.++|+|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~DvV 80 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTD--PEAVDDVDIV 80 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCC--HHHhcCCCEE
Confidence 46999999999999999999998765 77777444322222221110 00 111222112 1234679999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
|.+... ++ ...+.+.+.+.|+++|-.|+..
T Consensus 81 f~a~p~----------------~~--s~~~~~~~~~~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALPS----------------DV--AGEVEEEFAKAGKPVFSNASAH 110 (349)
T ss_pred EEeCCh----------------hH--HHHHHHHHHHCCCEEEECCchh
Confidence 887631 11 2344466667788877777754
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=61.02 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=43.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEE---EEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI---VIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~---~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+|.|.||||++|..|++.|.++++.+. .+.+... ....+. +. ..++...|+....+.++|+||-+++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~-~g~~~~--~~--~~~~~~~~~~~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS-AGRKVT--FK--GKELEVNEAKIESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc-CCCeee--eC--CeeEEEEeCChHHhcCCCEEEECCC
Confidence 489999999999999999999877543 3323211 111111 11 2345555555556688999999986
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=56.83 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=74.1
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC------CCceEEEeccccccccCCCCEEEEccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR------NPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~------~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+|.|.|+ |.+|..++..|+..+. +++++|...........++.. ...+.+...| .+.++++|+||-.||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence 4788897 9999999999998874 788998765444333322211 1234444333 357899999999998
Q ss_pred CCCCCCCcCC--hhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYN--PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~--~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
....+. .. -...+..|..-...+.+.+.+.+. .++.+|-
T Consensus 78 ~~~kpg--~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 78 PSIDPG--NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCC--CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 533322 23 367788999999999999998875 3444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0038 Score=55.85 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=73.5
Q ss_pred EEEEcCCchhHHHHHHHHHHCC----CeEEEEecCCCCccccccc---ccCCC-ceEEEeccccccccCCCCEEEEcccC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKDNLVH---HFRNP-RFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g----~~V~~i~r~~~~~~~~~~~---~~~~~-~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|.|.||+|.+|..++..|+..| .+|+++|.+.........+ ..... ...+...+-..+.++++|+||..++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 4789999999999999999988 6899999765443322211 11111 22333333335678999999999975
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.... ..........|+.-.+.+++.+.+.+. .++.+|
T Consensus 81 ~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 81 GRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3332 234455677899999999999988764 455554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=62.65 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC-CCCEEEEcccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACPA 191 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~-~~D~Vih~A~~~ 191 (309)
+++|+|+|||++| +|.++++.|++.|++|++.++.......... .+....+.+...+.....+. ++|+||.++|+.
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~-~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQ-ELLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHH-HHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 4678999999987 9999999999999999999865422211111 11222334433322222233 389999999853
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0042 Score=57.87 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=74.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC----CceEEEe-ccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIR-HDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~----~~v~~~~-~Dl~~~~~~~~D~Vih~A~ 189 (309)
++|.|+|+ |.+|+.++..|+..+. +++++|.+.........+.... ....+.. .| -+.++++|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d--y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD--YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC--HHHhCCCCEEEECCC
Confidence 69999996 9999999999988764 7888887654433332222111 1123332 23 234889999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.... ...+-...+..|+.-...+.+..++.+. .++.+|-
T Consensus 115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5332 2345667788999999999999988764 4556553
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=58.89 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
..++|.|.||||++|..|++.|.++++ ++..+... +........ .. .++...++..+.+.++|+||.+++..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-rsaGk~~~~--~~--~~~~v~~~~~~~~~~~D~vf~a~p~~ 80 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-RSAGKKVTF--EG--RDYTVEELTEDSFDGVDIALFSAGGS 80 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-CCCCCeeee--cC--ceeEEEeCCHHHHcCCCEEEECCCcH
Confidence 346899999999999999999998776 33333221 111111111 11 23333344445567899999887521
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
....+...+.+.|+++|=.|+..-+
T Consensus 81 ------------------~s~~~~~~~~~~g~~VIDlS~~fR~ 105 (344)
T PLN02383 81 ------------------ISKKFGPIAVDKGAVVVDNSSAFRM 105 (344)
T ss_pred ------------------HHHHHHHHHHhCCCEEEECCchhhc
Confidence 1223444455566677777776543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=58.80 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccC---CC-ceEEEeccccccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFR---NP-RFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~---~~-~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+++|.|.||||++|+.+++.|+++ +.+++.+.+.. ...+.+.+... .. ...+...| +....++|+||.|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCC--HHHhcCCCEEEECCCc
Confidence 479999999999999999999987 45777765521 11111111111 00 11122222 2245679999988731
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.....++..+.+.|+++|=.|+..-+
T Consensus 79 ------------------~~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 79 ------------------GVSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred ------------------HHHHHHHHHHHhCCCEEEECCcccCC
Confidence 11345566666778788888876654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00079 Score=61.14 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCC--CcccccccccC--CCceEEEeccccc-----cccCCCCE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFT--GRKDNLVHHFR--NPRFELIRHDVVE-----PILLEVDQ 183 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~--~~~~~~~~~~~--~~~v~~~~~Dl~~-----~~~~~~D~ 183 (309)
.++|+++|||| |++|++++..|++.|.+ |++++|+.. .+.+.+.+.+. ...+.....|+.+ ..+..+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 46789999998 89999999999999985 999988652 11122211111 1122233344433 24456899
Q ss_pred EEEcccC
Q 021681 184 IYHLACP 190 (309)
Q Consensus 184 Vih~A~~ 190 (309)
||||...
T Consensus 203 lINaTp~ 209 (289)
T PRK12548 203 LVNATLV 209 (289)
T ss_pred EEEeCCC
Confidence 9998743
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=55.62 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccc----------------------ccccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD----------------------NLVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~----------------------~~~~~~~~~~v~~~~ 170 (309)
.+.++|+|.| .|.+|+++++.|...|. +++++|.+.-...+ .+.+......++.+.
T Consensus 19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4567899999 68999999999999997 88888865221110 011111223344444
Q ss_pred ccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 171 ~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
.++.. +.+.++|+||.+.. ++ ..-..+-+.|.+.++.+|+.++.+.+|
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d---------~~--------~~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTD---------NF--------ATRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 33332 35678999998872 22 222346678888888888888766554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0042 Score=58.47 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=71.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-e----EEE--E--ecCCCCcccccccccCC-----CceEEEeccccccccCCCCE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-E----VIV--I--DNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQ 183 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~----V~~--i--~r~~~~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~D~ 183 (309)
+|.|+|++|.+|..++..|+..+. + |.+ + +.+.........++... ..+.+.. + ..+.++++|+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~-~-~y~~~kdaDI 123 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI-D-PYEVFEDADW 123 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec-C-CHHHhCCCCE
Confidence 899999999999999999988764 3 333 3 44333333222222111 1222222 2 2467899999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEec
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS 230 (309)
||-.||.. .....+....+..|+.-...+.+.+.++. . +++.+|.
T Consensus 124 VVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 124 ALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred EEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99999853 23345677889999999999999998854 3 5666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=55.66 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=54.8
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|...+.++|+|+|.|| |-+|...++.|++.|++|+++..... ..+........+.+...+.....+.++|+||-+.
T Consensus 3 Pl~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~---~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 3 PLMIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELT---ENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred ceEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCC---HHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 5566789999999996 99999999999999999999875322 1122222223455555555566678899988775
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0065 Score=51.98 Aligned_cols=105 Identities=16% Similarity=0.286 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc------------------------cccccCCCceEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN------------------------LVHHFRNPRFEL 168 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~------------------------~~~~~~~~~v~~ 168 (309)
.+..+|+|.|++| +|.++++.|+..|. +++++|.+.-...+. +.+.....+++.
T Consensus 17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 3456899999755 99999999999997 788887542211100 111112234444
Q ss_pred Eecccc------ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 169 IRHDVV------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 169 ~~~Dl~------~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
+..++. +..+.++|+||.+.. + ......+-+.|++.+..+|+.++.+.||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~--------~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATEE---------N--------YERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 444332 234677899997752 1 22233455888899889999998877764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0043 Score=54.94 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
..+.++|+|.|+ |.+|+.+++.|+..|. +++++|.+.-...+. +.+......++.+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 456779999997 9999999999999996 788877542211110 1111122344444
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
...+.. +.+.++|+||.+.. ++ ..-..+-++|.+.+..+|+.++...
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~D---------~~--------~~r~~ln~~~~~~~ip~v~~~~~g~ 158 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCTD---------NV--------ATRNQLNRACFAAKKPLVSGAAIRM 158 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecCC---------CH--------HHHHHHHHHHHHhCCEEEEeeeccC
Confidence 444433 34678999999872 22 2223456778888877777655443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.006 Score=52.16 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
.+.++|+|.|++ .+|.++++.|+..|. +++++|...-...+. +.+......++...
T Consensus 19 L~~s~VlIiG~g-glG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGLK-GLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcCC-HHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 355689999865 599999999999997 788887542211100 11111223444443
Q ss_pred cccc---ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 171 HDVV---EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 171 ~Dl~---~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
..+. ++.+.++|+||.+.. +. ..-..+-+.|.+.+..+++.++.+.||.
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~---------~~--------~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATEL---------SR--------AELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred cCccccHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 3332 234678999997752 12 2223455788899889999988777664
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=54.01 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=74.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccc-----cCCCceEEEe-ccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH-----FRNPRFELIR-HDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~-~Dl~~~~~~~~D~Vih~A 188 (309)
.++|.|.| +|.+|..++..++..|. +|+++|.+.........+. .......+.. .|. +.++++|+||.+|
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEECC
Confidence 36899999 59999999999998885 8888887655432221111 1111233332 343 4679999999999
Q ss_pred cCCCCCCC---cCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 189 CPASPVHY---KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
+....... +.+....+..|+.-...+++.+.+.+. .++.+|-
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 86433221 115566778899888888888888764 4555554
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0042 Score=54.37 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
.+.++|+|.| .|.+|+++++.|+..|. +++++|.+.-...+. +.+......++.+.
T Consensus 19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 4556899999 68999999999999997 777776542111110 01111123444444
Q ss_pred ccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 171 ~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
.++.. +.+.++|+||.+.. ++ ..-..+-+.|.+.++.+|+.+..+.+|
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d---------~~--------~~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTD---------NF--------ATRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCC---------CH--------HHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 44422 35677999999873 22 122356678888888888877655443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0069 Score=56.33 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=57.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC------CC--ceEEEeccccccccCCCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR------NP--RFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~------~~--~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
++|.|+|++|++|++|++.|.++.. +++.+................ .. ..++.-.+.....+.++|+||.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 4799999999999999999988764 777764332211111111110 00 01111112222345789999988
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.. .++ +..+...+.+.|+++|-.|+..-+
T Consensus 81 ~p----------------~~~--s~~~~~~~~~~G~~VIDlsg~fR~ 109 (341)
T TIGR00978 81 LP----------------SEV--AEEVEPKLAEAGKPVFSNASNHRM 109 (341)
T ss_pred CC----------------HHH--HHHHHHHHHHCCCEEEECChhhcc
Confidence 73 111 223335666678888888877544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0062 Score=55.60 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=71.9
Q ss_pred EEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCccccccccc---CC-CceEEEeccccccccCCCCEEEEcccCCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHF---RN-PRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~---~~-~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
|.|.|+ |.+|..++..|+..| .+++++|.+.........++. .. ....+...+- .+.+.++|+||.+||..
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p- 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP- 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC-
Confidence 457785 889999999999888 589999986543332222111 10 1122222221 35789999999999843
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.....+....+..|+.-...+.+.+++.+. .++.+|.
T Consensus 78 -~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 78 -RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 223345677788999999999999988864 5555553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0061 Score=55.76 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=71.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC-----CCceEEE-eccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELI-RHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~-~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|.|+ |.+|..++..|+..|. +|+++|...........+... .....+. ..|.. .+.++|+||-+||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence 57899996 9999999999999876 899999754322212111111 0111222 23432 3688999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.. .....+....+..|..-...+++.+.+.+. .+|.+|.
T Consensus 79 ~p--~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 79 LP--RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CC--CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 42 222334556788999999999998887754 4556554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=57.53 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=58.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEE-ecCCCCcccccccccC---CC-ceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGRKDNLVHHFR---NP-RFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i-~r~~~~~~~~~~~~~~---~~-~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|.|.||||++|..+++.|.++ +.+++.+ +... .....+...+. .. ...+...|. ++...++|+||.|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~-sagk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE-SAGKPVSEVHPHLRGLVDLNLEPIDE-EEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch-hcCCChHHhCccccccCCceeecCCH-HHhhcCCCEEEECCCc
Confidence 47999999999999999999987 3477744 3221 11111111111 10 112222222 2233579999998741
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. ....++..+.+.|+++|=.|+..-+
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 79 G------------------VSAELAPELLAAGVKVIDLSADFRL 104 (346)
T ss_pred h------------------HHHHHHHHHHhCCCEEEeCChhhhc
Confidence 0 2345666666778889989887544
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0074 Score=53.83 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=40.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
++|.|+|++|.+|+.+++.+.+. +.+++.+........... ....+...+-.+..+.++|+||.++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------~~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------GALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------CCCCccccCCHHHhccCCCEEEECC
Confidence 68999999999999999988875 467766543221111111 1111212222333455799999887
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0066 Score=53.59 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc----------------------ccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL----------------------VHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~----------------------~~~~~~~~v~~~ 169 (309)
..+..+|+|.| .|++|+.+++.|++.|. +++++|.+.-...+.- .+......++.+
T Consensus 21 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 35567899998 58999999999999996 7888776532221110 111112233444
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
...+.. +.+.+.|+||.+.. ++ .....+-++|.+.++.+|+.++...+|
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~D---------~~--------~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCTD---------NV--------EVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcCC---------CH--------HHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 333322 35678999998872 22 223345678888888888876554443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0049 Score=49.11 Aligned_cols=90 Identities=24% Similarity=0.325 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc---CCCCEEEEcccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---LEVDQIYHLACPA 191 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~---~~~D~Vih~A~~~ 191 (309)
+++++++.|. | -|..++..|.+.|++|+++|.+...... . ....++++..|++++.+ +++|.|+-.=
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~-a----~~~~~~~v~dDlf~p~~~~y~~a~liysir--- 85 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEK-A----KKLGLNAFVDDLFNPNLEIYKNAKLIYSIR--- 85 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHH-H----HHhCCeEEECcCCCCCHHHHhcCCEEEEeC---
Confidence 3468999994 5 8888999999999999999976543211 1 22356889999998844 5789888663
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~i 228 (309)
.+.+ -...+++.+++.++.+++.
T Consensus 86 -------pp~e-------l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 86 -------PPRD-------LQPFILELAKKINVPLIIK 108 (134)
T ss_pred -------CCHH-------HHHHHHHHHHHcCCCEEEE
Confidence 1222 2346889999999854443
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0075 Score=54.52 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccc----------------------ccccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD----------------------NLVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~----------------------~~~~~~~~~~v~~~~ 170 (309)
++..+|||.| .|++|.++++.|+..|. +++++|...-...+ .+.+.-....++...
T Consensus 17 L~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 17 LQKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HhcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3456899999 57999999999999997 78887754221111 011222234566666
Q ss_pred ccccccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 171 HDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 171 ~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
.++..+.+.+.|+||.+.. +... -..+-++|.+.++.+|...+.+.+|.
T Consensus 96 ~~~~~~~l~~fdvVV~~~~---------~~~~--------~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 96 GPLTTDELLKFQVVVLTDA---------SLED--------QLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred ccCCHHHHhcCCEEEEecC---------CHHH--------HHHHHHHHHHcCCEEEEEeccccEEE
Confidence 6666677888999998762 2222 23455788888888999888777664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=58.05 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCC-CceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..++++++|+|+ |.+|++++..|.+.| .+|++++|+..+..+ +.+.+.. ..+.+ ..+. ...+.++|+||++...
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~-l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~ 195 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEE-LAKLFGALGKAEL-DLEL-QEELADFDLIINATSA 195 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhhhccceee-cccc-hhccccCCEEEECCcC
Confidence 356789999996 999999999999999 689999986543322 2111111 11222 1121 2455779999999753
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0074 Score=56.43 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
.++..+|+|.|+ |++|+++++.|+..|. +++++|.+.-...+. +.+......++.+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 356679999995 8999999999999997 788887653211110 1111122344444
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
...+.. +.+.++|+||.+.. +. ..-..+-++|.+.++.+|+.++.+.+|
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d---------~~--------~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSD---------NF--------DTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 444443 35678999999972 22 222235578888888888887655544
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=59.77 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=53.1
Q ss_pred eEEEEcCCchhHHHHHHHHHH----CCCeEEEEecCCCCcccccccccC-----CCceEEEecccccc-----ccCCCCE
Q 021681 118 RIVVTGGAGFVGSHLVDKLID----RGDEVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEP-----ILLEVDQ 183 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~----~g~~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~~Dl~~~-----~~~~~D~ 183 (309)
.++|.||+||-|..+++++++ .+...-+..|+..+..+.+...-. ....-++.+|..++ .++.+.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 689999999999999999999 566777778876655443322111 12222777888655 4567999
Q ss_pred EEEcccCC
Q 021681 184 IYHLACPA 191 (309)
Q Consensus 184 Vih~A~~~ 191 (309)
|+||+|+.
T Consensus 87 ivN~vGPy 94 (423)
T KOG2733|consen 87 IVNCVGPY 94 (423)
T ss_pred EEeccccc
Confidence 99999864
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.059 Score=52.92 Aligned_cols=169 Identities=17% Similarity=0.268 Sum_probs=102.2
Q ss_pred CCccCCCCCeEEEEcC-CchhHHHHHHHHHHCCCeEEEEecCCC-Cccccccccc-----CCCceEEEeccc--------
Q 021681 109 PVGIGRRRLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFT-GRKDNLVHHF-----RNPRFELIRHDV-------- 173 (309)
Q Consensus 109 p~~~~~~~k~VlITGa-tG~IG~~l~~~Ll~~g~~V~~i~r~~~-~~~~~~~~~~-----~~~~v~~~~~Dl-------- 173 (309)
|-...+.++.++|||| -|.||.+++..||.-|..|++...+.. ...+-.+.+. ....+-++....
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA 468 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA 468 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence 4455678899999998 589999999999999999988754322 2221111111 011121222111
Q ss_pred c-----cc-------------ccCCCCEEEEcccCCCCCCCcC---ChhHHHHHHHHHHHHHHHHHHHcCC--------c
Q 021681 174 V-----EP-------------ILLEVDQIYHLACPASPVHYKY---NPVKTIKTNVMGTLNMLGLAKRVGA--------K 224 (309)
Q Consensus 174 ~-----~~-------------~~~~~D~Vih~A~~~~~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~--------r 224 (309)
. ++ ..-.+|.+|-+|++.-.....+ ..+..+++-+....+++-.+++.+. +
T Consensus 469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~h 548 (866)
T COG4982 469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLH 548 (866)
T ss_pred HHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceE
Confidence 0 00 1123899999998644333222 1234456666666777777666541 3
Q ss_pred EEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCcEEEEEeCceeCCCC
Q 021681 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA----GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 225 ~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~----gi~~~ivRp~~V~Gp~~ 294 (309)
+|+-.|-.- --++....|+.+|.+.|.++...+.+. -+.++-.++|++-|.+.
T Consensus 549 VVLPgSPNr-----------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGL 605 (866)
T COG4982 549 VVLPGSPNR-----------------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGL 605 (866)
T ss_pred EEecCCCCC-----------------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccc
Confidence 565555321 123344689999999999988776554 25566677888888764
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.018 Score=49.80 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc---------------------cccccCCCceEEEe
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN---------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~---------------------~~~~~~~~~v~~~~ 170 (309)
..+..+|+|.| .|.+|+.+++.|++.|. +++++|.+.-...+. +........++.+.
T Consensus 25 ~L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 34567899999 58999999999999997 688888652111000 00111122344444
Q ss_pred ccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CCcEEEEeccccccC
Q 021681 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSEVYGD 236 (309)
Q Consensus 171 ~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~r~v~iSS~~vy~~ 236 (309)
..+.+ +.+.++|+||.+. +++ .....+.+.|.+. +..+|+.+...-|+.
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~a~---------D~~--------~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVEAF---------DNA--------ETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred eecCHHHHHHHHcCCCEEEECC---------CCH--------HHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 44433 3567899999886 222 2233456777777 778888766555544
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=53.07 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=63.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEecccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRHDVV 174 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~Dl~ 174 (309)
+|||.|+ |++|.++++.|+..|. +++++|.+.-...+. +.+......++....++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4889995 9999999999999997 788887542211110 011112234444555554
Q ss_pred c-----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 175 E-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 175 ~-----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+ +.+++.|+||.+.. |...-..+-+.|.+.++.+|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~ip~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCCCEEEEecCccee
Confidence 3 45678999998862 22333455677888888888887766655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0054 Score=52.80 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|...+.++++|+|.|| |-+|..-++.|++.|++|++++.... ..+.......++.++..+.....+.+++.||-+.
T Consensus 2 P~~l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 2 PVFANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred CeEEEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence 4455678899999995 89999999999999999999875433 2222222334788888777777778889988665
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=50.41 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc-----------------------cccccCCCceEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN-----------------------LVHHFRNPRFEL 168 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~-----------------------~~~~~~~~~v~~ 168 (309)
..++.+|+|.| .|++|+++++.|+..|. +++++|.+.-...+. +.+......++.
T Consensus 24 ~L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 34567899999 58999999999999996 788887542111000 011111223333
Q ss_pred Eeccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 169 ~~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
....+.+ ..+++.|+||.+.. +. ..-..+-++|++.++.+|+.++.+.||.
T Consensus 103 ~~~~~~~~~~~~~l~~~D~Vid~~d---------~~--------~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 103 FVGRLSEENIDEVLKGVDVIVDCLD---------NF--------ETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred EeccCCHHHHHHHHhcCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 3333322 25678999998872 21 1122345678888888888887766653
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=55.51 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
.++..+|+|.| .|++|+.+++.|+..|. +++++|.+.-...+. +.+......++.+
T Consensus 39 ~L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 39 RLKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 34567899999 58999999999999997 788877542211110 0111112234444
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
...+.. ..+.++|+||.+.. + ...-..+-++|.+.++.+|+.+..+.+|.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d---------~--------~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTD---------N--------FATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 444433 35678999998872 2 22223456788888888888877666653
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0036 Score=56.18 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC-CceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++++++|+|+ |.+|++++..|++.|.+|++++|...+..+ +.+.+.. ....... ..+....++|+||++...
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~-la~~~~~~~~~~~~~--~~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEE-LAERFQRYGEIQAFS--MDELPLHRVDLIINATSA 188 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHhhcCceEEec--hhhhcccCccEEEECCCC
Confidence 35679999997 799999999999999999998876433222 1111111 1122222 222234579999999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=53.88 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+.++|.|.||||++|..|++.|.++.+ ++..+... ......+. +....+.+. ++.+..+.++|++|.+++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~~~~--~~~~~~~v~--~~~~~~~~~~Dvvf~a~p~- 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGETLR--FGGKSVTVQ--DAAEFDWSQAQLAFFVAGR- 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCceEE--ECCcceEEE--eCchhhccCCCEEEECCCH-
Confidence 456899999999999999999998533 55555322 11111121 112122222 4433344789999998741
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.-...++..+.+.|+++|=.|+..-+
T Consensus 77 -----------------~~s~~~~~~~~~~g~~VIDlS~~fRl 102 (336)
T PRK08040 77 -----------------EASAAYAEEATNAGCLVIDSSGLFAL 102 (336)
T ss_pred -----------------HHHHHHHHHHHHCCCEEEECChHhcC
Confidence 01334555566667777777776543
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.002 Score=58.37 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=52.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
..++|-||+||.|..++++|..+|.+-.+..|+..+.......+ .+...+.....+..++.+...++|+||+|+..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence 37999999999999999999999988766666544333211111 01122222334456667788999999999754
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=52.60 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
.++..+|+|.| .|++|+.++..|+..|. +++++|.+.-...+. +.+......++.+
T Consensus 24 kL~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 24 RLRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 45667899999 58999999999999997 788877542211110 1111122344444
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
...+.. +.+.++|+|+.+.- ++ ++..-..+-++|.+.++.+|+.+...
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D---------~~------~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLD---------FF------EFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 444433 35678999996651 11 11223456678888888888875543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.028 Score=49.33 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
++..+|+|.| .|.+|+++++.|++.|. +++++|.+.-...+. +.+......++.+.
T Consensus 9 L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4556899999 58999999999999997 888887542111100 01111123444444
Q ss_pred ccccc----ccc-CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 171 HDVVE----PIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 171 ~Dl~~----~~~-~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
..+.. ..+ .++|+||.+.. |+..-..|.+.|.+.+..+|...+.+-
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 33332 223 35899998872 122334577889888878877666543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.009 Score=56.34 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCc------------------ccc----cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~------------------~~~----~~~~~~~~~v~~~ 169 (309)
..+.++|+|.| .|++|+++++.|+..|. +++++|.+.-.. .+. +.+......++..
T Consensus 132 ~l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 45677899997 58899999999999997 788888652110 000 1111112233333
Q ss_pred ecccc----ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 170 RHDVV----EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 170 ~~Dl~----~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
...+. +..+.++|+||++.. ++. .-..+-++|.+.++.+|+.+....+
T Consensus 211 ~~~~~~~~~~~~~~~~D~Vv~~~d---------~~~--------~r~~ln~~~~~~~ip~i~~~~~g~~ 262 (376)
T PRK08762 211 QERVTSDNVEALLQDVDVVVDGAD---------NFP--------TRYLLNDACVKLGKPLVYGAVFRFE 262 (376)
T ss_pred eccCChHHHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEeccCE
Confidence 33332 235678999999973 221 1223567888888888888765443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.007 Score=55.41 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|+| +|.+|..++..|++.|++|++.+++..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 799999999999999999999998643
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.018 Score=52.55 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=68.0
Q ss_pred EEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccc---ccc--CCCceEEE-eccccccccCCCCEEEEcccCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLV---HHF--RNPRFELI-RHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~---~~~--~~~~v~~~-~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
|.|.|+ |.+|..++..|+..|. +|+++|.+......... +.. ......+. ..| ...++++|+||.+++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCCC
Confidence 468897 9999999999998875 99999987543221111 110 01112222 133 34588999999999743
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.....+....+..|+.-...+++.+.+... .+|.+|
T Consensus 78 --~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 78 --RKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred --CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 222334455667888888888888887764 345554
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0097 Score=48.96 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
-|...+.++++|+|.|| |-+|...++.|++.|++|++++... .+.+.+ ...+.+...++....+.+.|+||-+
T Consensus 5 ~P~~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~---~~~l~~---l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEI---CKEMKE---LPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cceEEEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCcc---CHHHHh---ccCcEEEecccChhcCCCceEEEEC
Confidence 46677889999999995 8999999999999999999885321 112221 1234444555555567788888876
Q ss_pred c
Q 021681 188 A 188 (309)
Q Consensus 188 A 188 (309)
.
T Consensus 78 T 78 (157)
T PRK06719 78 T 78 (157)
T ss_pred C
Confidence 5
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=51.81 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=70.9
Q ss_pred EcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC-----CCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 122 TGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 122 TGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
.| .|.+|..++..|+..+. +++++|...........++.. ...+.+... ..+.++++|+||-.||....
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~--~~~~~~daDivVitag~~rk- 77 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSG--DYSDCKDADLVVITAGAPQK- 77 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecC--CHHHHCCCCEEEECCCCCCC-
Confidence 45 59999999999988764 788888765444333322211 122333322 23578999999999985332
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
...+....++.|+.-...+.+.+.+++. .++.+|.
T Consensus 78 -~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 78 -PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 2345677889999999999999988864 5666664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.018 Score=54.20 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFEL 168 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~ 168 (309)
...+..+|+|.| .|++|+.+++.|+..|. +++++|.+.-...+. +.+......++.
T Consensus 37 ~~l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 345667899999 58999999999999996 888888652211110 011112233444
Q ss_pred Eeccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 169 ~~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+...+.. +.++++|+||.|.. |...-..+-++|.+.++.+|+.+..+-+|
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGSD-----------------SFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 4444432 35778999999972 22223345577888887777776644433
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0087 Score=49.81 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
...+++|+|.|+++.+|..+++.|.++|.+|+++.|.. +-..+.+.++|+||.+.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------------------hhHHHHHhhCCEEEEcCC
Confidence 46889999999977789999999999999988887631 112235677899998875
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0059 Score=49.61 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++++++|+|+ |.+|..+++.|.+.| .+|++++++.....+... .+....+.....|. .+.+.++|+||++...
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAE-RFGELGIAIAYLDL-EELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH-HHhhcccceeecch-hhccccCCEEEeCcCC
Confidence 45679999997 899999999999986 689888876443222111 11111011111222 2236789999999864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.016 Score=55.98 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc
Q 021681 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176 (309)
Q Consensus 113 ~~~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~ 176 (309)
+++||+||||+| ||.+|.+|++.+..+|++|+++.-... +. ....++++..+-.++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-----~~---~p~~v~~i~V~ta~e 324 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-----LA---DPQGVKVIHVESARQ 324 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-----CC---CCCCceEEEecCHHH
Confidence 479999999986 699999999999999999999873221 10 112344554433332
Q ss_pred -------ccCCCCEEEEcccCC
Q 021681 177 -------ILLEVDQIYHLACPA 191 (309)
Q Consensus 177 -------~~~~~D~Vih~A~~~ 191 (309)
.+ ..|++|++|++.
T Consensus 325 M~~av~~~~-~~Di~I~aAAVa 345 (475)
T PRK13982 325 MLAAVEAAL-PADIAIFAAAVA 345 (475)
T ss_pred HHHHHHhhC-CCCEEEEecccc
Confidence 22 379999999863
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=53.55 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+||+|+|.|++|.+|+.++..|+++|..|+++.+. ... ..+.+.++|+||++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~----t~~-----------------L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR----TQN-----------------LPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC----chh-----------------HHHHhccCCEEEEccC
Confidence 4689999999999999999999999999998888751 111 1122367899999986
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.046 Score=48.63 Aligned_cols=113 Identities=20% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeE---EEEecC-CCCcccccccccCCCceE-EEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEV---IVIDNF-FTGRKDNLVHHFRNPRFE-LIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V---~~i~r~-~~~~~~~~~~~~~~~~v~-~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.+|.|.||+|+||+.|. .|++..+.| .+.|.. ...-...+.+.-....+. +.-.|-.+..++++|+|+--||
T Consensus 27 ~~~KVAvlGAaGGIGQPLS-LLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAG 105 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLS-LLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAG 105 (345)
T ss_pred CcceEEEEecCCccCccHH-HHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCC
Confidence 4558999999999999996 455565533 333321 111112222221112222 2224456668899999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
....+. ..-+..|++|..-...|..++.+... .+.+||-
T Consensus 106 VPRKPG--MTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 106 VPRKPG--MTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CCCCCC--CcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 544443 34567788999999999999888753 5556654
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0045 Score=57.21 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccccc-----CCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-----LEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~-----~~~D~Vih~A~ 189 (309)
+.+|||+||+|.+|+..++.+...|+.++++....++.. .+.+.-.+..+++.+.|+.+... +++|+|+...|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 679999999999999999888888877666665433333 33333233344555566555422 35999999876
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.041 Score=48.33 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=62.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEecccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRHDVV 174 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~Dl~ 174 (309)
+|+|.| .|++|.++++.|+..|. +++++|.+.-...+. +.+......++....++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 478888 68999999999999997 788887542211110 011111223444444442
Q ss_pred ------ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 175 ------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 175 ------~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+..++++|+||.+.. |+..-..+-+.|.+.++.+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 235678999998862 33334456677888887788777765544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=53.68 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFEL 168 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~ 168 (309)
...+..+|+|.| .|++|+.+++.|+..|. +++++|.+.-...+. +.+.....+++.
T Consensus 34 ~~L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 345667999999 58999999999999997 788877542211110 111112234555
Q ss_pred Eeccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 169 ~~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+...++. ..+.++|+||.+.. ++ ..-..+-++|.+.++.+|+.+..+-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d---------~~--------~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD---------NF--------PTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 5544443 35678999999972 22 222234577888887888776655554
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.046 Score=51.04 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred CeEEEEcCCchhHHHHHHHHH-HCCCe---EEEEecCCCCcccccccccCCCceEEEecccccc-ccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLI-DRGDE---VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-ILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll-~~g~~---V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-~~~~~D~Vih~A~~~ 191 (309)
|+|.|.||||.+|+.+++.|. ++... ++.+........ ...+..... ...++.+. .+.++|++|.+++-
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~---~~~f~~~~~--~v~~~~~~~~~~~vDivffa~g~- 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQA---APSFGGTTG--TLQDAFDIDALKALDIIITCQGG- 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCC---cCCCCCCcc--eEEcCcccccccCCCEEEEcCCH-
Confidence 478999999999999999999 44443 344332211111 111222222 22344443 67899999999961
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. -+..+...+.+.|...+.++.++.|
T Consensus 75 ---------------~--~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 75 ---------------D--YTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred ---------------H--HHHHHHHHHHhCCCCeEEEECChhh
Confidence 1 2345667777888544444444444
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0081 Score=51.51 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
..++|+|+|+|. |.+|+.+++.|.+.|++|++.+++.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 457899999996 6999999999999999999887653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.035 Score=51.55 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-Ce---EEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DE---VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~---V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++++|.|.||||++|+.+++.|.++. .. +..+... +.....+ .+....+.+...| ...+.++|++|.+++.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~-~saGk~~--~~~~~~l~v~~~~--~~~~~~~Divf~a~~~ 78 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK-RSAGKTV--QFKGREIIIQEAK--INSFEGVDIAFFSAGG 78 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc-ccCCCCe--eeCCcceEEEeCC--HHHhcCCCEEEECCCh
Confidence 34689999999999999999998643 35 4444322 1111111 1122233333333 3345789999998741
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. -...+...+.+.|+.+|=.||..-+
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VID~Ss~fR~ 104 (347)
T PRK06728 79 E------------------VSRQFVNQAVSSGAIVIDNTSEYRM 104 (347)
T ss_pred H------------------HHHHHHHHHHHCCCEEEECchhhcC
Confidence 0 1234445555566666666665543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.078 Score=47.50 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
++..+|+|.| .|++|+++++.|++.|. +++++|.+.-...+. +.+......++.+.
T Consensus 28 L~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 4667899998 58999999999999994 888888542211100 00111112233332
Q ss_pred cccc----cccc-CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 171 HDVV----EPIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 171 ~Dl~----~~~~-~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.-+. +..+ .++|+||.+.. ++..-..|.+.|.+.+..+|.....+..
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD-----------------~~~~k~~L~~~c~~~~ip~I~~gGag~k 158 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAID-----------------SVRPKAALIAYCRRNKIPLVTTGGAGGQ 158 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 2111 1233 36899998873 1222345778898888888877665543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.06 Score=45.06 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=60.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc---------------------cccccCCCceEEEeccccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN---------------------LVHHFRNPRFELIRHDVVE 175 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~---------------------~~~~~~~~~v~~~~~Dl~~ 175 (309)
+|+|.| .|.+|+.+++.|++.|. +++++|.+.-...+. +.+......++.+...+..
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 478888 58999999999999997 698888653111000 0011112234334333333
Q ss_pred ----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CCcEEEEeccccccC
Q 021681 176 ----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSEVYGD 236 (309)
Q Consensus 176 ----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~r~v~iSS~~vy~~ 236 (309)
+.++++|+||.+.. ++ ..-..+.+.+.+. ++.+|+.+....|+.
T Consensus 80 ~~~~~~l~~~DlVi~~~d---------~~--------~~r~~i~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFD---------NA--------ETKAMLAESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred hhHHHHhcCCCEEEECCC---------CH--------HHHHHHHHHHHHHCCCCEEEEehhhccCC
Confidence 35678999998862 22 2223455666665 677887765555544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0072 Score=52.48 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=31.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.||+|.+|..++..|.+.|++|++.+|+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 57999999999999999999999999998887643
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.039 Score=41.89 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=45.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+.++++|+|.|| |-+|..=++.|++.|.+|+++.... +... ..+++...+.. ..+.+.+.||-+.
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAAT 68 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-S
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecC
Confidence 467899999996 9999999999999999999998643 1111 34445555553 5678889888554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.01 Score=53.88 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
...+++++|+|. |.+|+.+++.|...|.+|++.+|....... .. ......+..+-..+.+.++|+||++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~-~~----~~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR-IT----EMGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HH----HCCCeeecHHHHHHHhccCCEEEECC
Confidence 457899999996 889999999999999999999886432111 10 01122333333445677899999986
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.058 Score=49.40 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=52.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
+.+|.|.||||+.|..|++.|.++.+ ++..+..... . .. +..+..+.++|+||.+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~----------~~-----~~~~~~~~~~DvvFlalp~---- 60 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--K----------DA-----AARRELLNAADVAILCLPD---- 60 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--C----------cc-----cCchhhhcCCCEEEECCCH----
Confidence 45899999999999999998888864 4444432211 1 00 1122345679999988731
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
. -...+...+.+.|+++|=.|+..
T Consensus 61 -------~-------~s~~~~~~~~~~g~~VIDlSadf 84 (313)
T PRK11863 61 -------D-------AAREAVALIDNPATRVIDASTAH 84 (313)
T ss_pred -------H-------HHHHHHHHHHhCCCEEEECChhh
Confidence 0 12334455556677888888754
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.075 Score=49.76 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=40.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-e---EEEEecCCCCcccccccccCCCceEEEecccc-ccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-E---VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~---V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-~~~~~~~D~Vih~A~ 189 (309)
++|.|.||||++|+.+++.|+++.. . ++.+.... ..... ..+..... ...++. ...+.++|++|.+++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~--sg~~~-~~f~g~~~--~v~~~~~~~~~~~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ--AGGAA-PSFGGKEG--TLQDAFDIDALKKLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh--hCCcc-cccCCCcc--eEEecCChhHhcCCCEEEECCC
Confidence 6899999999999999997777643 4 55543321 11111 11222222 222333 234678999999985
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.05 Score=49.86 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD 141 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~ 141 (309)
+++|-|.||||.+|+.+++.|.++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC
Confidence 46899999999999999999999654
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.012 Score=50.42 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=28.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
+|++.| ||+|-||+.|+++|.+.|++|++..+....
T Consensus 1 m~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 1 MMIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred CcEEEE-eccChHHHHHHHHHHhCCCeEEEecCCChh
Confidence 355665 558999999999999999999998665443
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.016 Score=52.42 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC--CCceEEEeccccccccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.++++|+|.|+ |+.|++++..|.+.|. +|++++|...+.+. +.+.+. .....+...+-....+.++|+||++.
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~-la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAA-LADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 45689999995 7899999999999997 79998886543322 221111 11223333232234567899999994
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.083 Score=46.77 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEE-EecCCCCcc-cccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIV-IDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~-i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+++|.|.|++|-+|+.+++.+.+... ++.. +++...... ....+......+.+...|........+|++|.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT 77 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT 77 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC
Confidence 57899999999999999999998863 5443 444322111 1111111112222222222334455678888775
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.049 Score=47.57 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=50.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
|+++|.| .|-+|..+++.|.+.|++|++++++.....+... .......+.+|-+++ -+.++|+++-..+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 5788888 5899999999999999999999976443332121 123566777887776 2456899997764
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.017 Score=53.04 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=27.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEe
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~ 147 (309)
+++|.|.||+|+.|.+|++.|+.+.. ++..+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~s 34 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILIS 34 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEee
Confidence 56899999999999999999998865 655554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.025 Score=51.05 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=46.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++||+|+|+|+++.+|+.++..|+++|..|+++.+.. +-..+.++++|+||.+.|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------------------~~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------------------KDMASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHHhhCCEEEECCCC
Confidence 46899999999999999999999999999999887521 1123456788999998863
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.012 Score=53.37 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEE-eccccccccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI-RHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~-~~Dl~~~~~~~~D~Vih~A 188 (309)
.|+.+.|+|+.| +|.--++.-.+.|.+|+++++...++++....+-.+.-++.. +.|......+..|.++|++
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v 254 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV 254 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceee
Confidence 678999999988 999888877888999999998776665555433222223334 5566666777778888877
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.018 Score=56.71 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
..++|+++|+|+ |++|++++..|++.|++|++++|..
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 356789999998 7999999999999999999888753
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.049 Score=55.40 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccc---------------------cccccCCCceEE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---------------------LVHHFRNPRFEL 168 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~---------------------~~~~~~~~~v~~ 168 (309)
...+..+|+|.|. | +|+.++..|++.|. +++++|.+.-...+. +.+.....+++.
T Consensus 103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 3457789999999 7 99999999999983 788877542111100 111112235555
Q ss_pred Eeccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 169 ~~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+...++. +.+.++|+||.|.- |+..-..+-++|.+.++.+|+-++.
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-----------------SLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5554443 35678999999982 2222334557888888888887753
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.018 Score=52.16 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=47.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCC-CceEEEec-cccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRN-PRFELIRH-DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~-Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++++++|.|+ |+.|++++..|.+.|. +|+++.|...+..+ +.+.+.. ..+..+.. +-....+.++|+|||+...
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~-La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSR-LVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH-HHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 45789999985 8999999999999996 78888886443322 2222111 11111111 1112345679999999753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=46.36 Aligned_cols=104 Identities=22% Similarity=0.243 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc------------------ccccc----CC----CceE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN------------------LVHHF----RN----PRFE 167 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~------------------~~~~~----~~----~~v~ 167 (309)
.+.-|+|.| .|++|++++..|++.|. .+.++|-..-..... +.+++ .- .+..
T Consensus 73 ~~syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 73 TNSYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred cCcEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence 445688888 58899999999999997 565555321111100 01110 00 0111
Q ss_pred EEecccccc-ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 168 LIRHDVVEP-ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 168 ~~~~Dl~~~-~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
++..+-.++ .+.++|.|+.|. -|+..-..|++.|-++|.++|--..++.-.+
T Consensus 152 l~~~~s~edll~gnPdFvvDci-----------------DNidtKVdLL~y~~~~~l~Viss~GaaaksD 204 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCI-----------------DNIDTKVDLLEYCYNHGLKVISSTGAAAKSD 204 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhh-----------------hhhhhhhHHHHHHHHcCCceEeccCccccCC
Confidence 122222222 345699999887 4677777899999998877654333443333
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.027 Score=53.10 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
..++|.|.||.|.+|..+++.|.+.|++|++.++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 45789999999999999999999999999999863
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.071 Score=51.30 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
.+++++|.|+ |.+|+.+++.|.+.|++|++++.+...... +... ...+.++.+|.+++ .+.++|.||-+.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~-~~~~--~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEE-LAEE--LPNTLVLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HHHH--CCCCeEEECCCCCHHHHHhcCCccCCEEEECC
Confidence 4678999997 999999999999999999999876442221 1111 12456788888765 345688888665
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.014 Score=48.16 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=43.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|++|-+.| .|-+|+.+++.|++.|++|++.++...+.+..... . ...+|-..+...++|+||-+-
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----g--~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-----G--AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-----T--EEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-----h--hhhhhhhhhHhhcccceEeec
Confidence 57899999 69999999999999999999998754322221111 1 334455555666778888775
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=44.61 Aligned_cols=77 Identities=12% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
.|+....++++|||.|| |-++..=++.|++.|.+|+++.-... +.+........+.++..+.....+.+++.||-+
T Consensus 17 ~pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~i~---~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 17 MFISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKKFS---KEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred eeeEEECCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCCC---HHHHHHHhCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 56677778999999995 88998888999999999999875432 222222334567777777766677888888877
Q ss_pred c
Q 021681 188 A 188 (309)
Q Consensus 188 A 188 (309)
.
T Consensus 93 T 93 (223)
T PRK05562 93 T 93 (223)
T ss_pred C
Confidence 5
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.042 Score=49.95 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=45.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+..||+|.|.|.+|.+|+.++..|+++|+.|++..+... + ..+...++|+||-+.|
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------~-l~e~~~~ADIVIsavg 211 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------D-AKALCRQADIVVAAVG 211 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------C-HHHHHhcCCEEEEecC
Confidence 3568999999999999999999999999999999865321 1 2234567899998886
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.014 Score=49.47 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=26.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.| .|++|..++..|++.|++|+++|.+..
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 6888987 899999999999999999999997644
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.026 Score=47.35 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=47.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.....+++|.|.| .|-||+.+++.|..-|.+|+..++....... . ....+ ..+-.++.+..+|+|+.+..
T Consensus 31 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~----~~~~~---~~~~l~ell~~aDiv~~~~p 100 (178)
T PF02826_consen 31 GRELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEG-A----DEFGV---EYVSLDELLAQADIVSLHLP 100 (178)
T ss_dssp BS-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHH-H----HHTTE---EESSHHHHHHH-SEEEE-SS
T ss_pred ccccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhh-c----ccccc---eeeehhhhcchhhhhhhhhc
Confidence 4457889999998 6999999999999999999999986543220 0 00112 33345567778999988764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.2 Score=43.81 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=91.0
Q ss_pred eEEEEcCCchhHHHHHHHHHHC---CC--eEEEEecCCCCccccc---ccccCCCce----EEEeccccccccCCCCEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDR---GD--EVIVIDNFFTGRKDNL---VHHFRNPRF----ELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~---g~--~V~~i~r~~~~~~~~~---~~~~~~~~v----~~~~~Dl~~~~~~~~D~Vi 185 (309)
+|+||||+|.||.+|+-.+.+- |. -+++.-.........+ .-.+.+..+ .++..+-..+.++++|+.|
T Consensus 6 rVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~ai 85 (332)
T KOG1496|consen 6 RVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDVAI 85 (332)
T ss_pred EEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCcEEE
Confidence 8999999999999999888753 22 1222111111111111 001111111 1222222344788899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
-..+. +.....+....+..|+.-...=-.++.+. .++++.+..-+-- +.-...+. . ..+...+.-+.+
T Consensus 86 lvGa~--PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNT---Nali~~k~-A---psIP~kNfs~lT 156 (332)
T KOG1496|consen 86 LVGAM--PRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANT---NALILKKF-A---PSIPEKNFSALT 156 (332)
T ss_pred Eeccc--cCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCcccc---chhHHhhh-C---CCCchhcchhhh
Confidence 88753 22223345666778887665555555544 3477776653211 00000010 0 011122556677
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
++--.+....++.+.|+++..+.--.|||..
T Consensus 157 RLDhNRA~~QlA~klgv~~~~VkNviIWGNH 187 (332)
T KOG1496|consen 157 RLDHNRALAQLALKLGVPVSDVKNVIIWGNH 187 (332)
T ss_pred hhchhhHHHHHHHhhCCchhhcceeEEeccc
Confidence 7777777777888889988888877788864
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.094 Score=47.88 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=50.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~ 196 (309)
+|.|.||+|+.|.+|++.|+++.+ ++..+.... . ++ ..| .+..+.++|++|.+...
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~------------~~--~~~-~~~~~~~~D~vFlalp~------ 59 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--R------------KD--AAE-RAKLLNAADVAILCLPD------ 59 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--c------------cC--cCC-HhHhhcCCCEEEECCCH------
Confidence 799999999999999999998854 554443211 1 11 001 12344679999988731
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
. -...++..+.+.|+++|=.|+..
T Consensus 60 -----~-------~s~~~~~~~~~~g~~VIDlSadf 83 (310)
T TIGR01851 60 -----D-------AAREAVSLVDNPNTCIIDASTAY 83 (310)
T ss_pred -----H-------HHHHHHHHHHhCCCEEEECChHH
Confidence 0 12244455556677888788754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.078 Score=55.99 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccc----------------------ccccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD----------------------NLVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~----------------------~~~~~~~~~~v~~~~ 170 (309)
++..+|||.|. |++|.++++.|...|. .++++|...-...+ .+.+......++...
T Consensus 22 L~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 100 (1008)
T TIGR01408 22 MAKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSS 100 (1008)
T ss_pred HhhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEec
Confidence 34568999995 7799999999999997 78887754211110 011222234566666
Q ss_pred ccccccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC--CcEEEEeccccccC
Q 021681 171 HDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGD 236 (309)
Q Consensus 171 ~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~r~v~iSS~~vy~~ 236 (309)
.++..+.+.+.|+||.+-. +... ...+-++|++.+ +.||+.++.+.||.
T Consensus 101 ~~l~~e~l~~fdvVV~t~~---------~~~~--------~~~in~~cr~~~~~I~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 101 VPFNEEFLDKFQCVVLTEM---------SLPL--------QKEINDFCHSQCPPIAFISADVRGLFGS 151 (1008)
T ss_pred ccCCHHHHcCCCEEEECCC---------CHHH--------HHHHHHHHHHcCCCeEEEEEeecceEEE
Confidence 6777778889999998741 2222 234568899998 67888888777763
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.032 Score=50.85 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
..+++++|.|. |.+|+.++..|.+.|.+|++++|...... .... .....+..+...+.+.++|+||+++
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~-~~~~----~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLA-RITE----MGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHH----cCCeeecHHHHHHHhCCCCEEEECC
Confidence 46789999996 78999999999999999999988643221 1111 1223333333345677899999986
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.04 Score=53.00 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=48.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
|+|+|.|+ |.+|+.+++.|.+.|++|++++++...... .. ....+.++.+|.+++ .+.++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~-~~---~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRR-LQ---DRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHH-HH---hhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 58999997 999999999999999999999875432221 11 113466777777654 256788888775
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.046 Score=53.19 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..+++|+|.|+ |++|.++++.|.++|++|+++++............+....+++...+-.. ...++|.||...|+
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGW 88 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCc
Confidence 46779999995 88999999999999999999986432211111122222344444333222 34568999988875
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=49.09 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEec
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRH 171 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~ 171 (309)
+..+|+|.|+ |.+|.++++.|...|. .++++|...-...+. +.+.-....++.+..
T Consensus 19 ~~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 19 ESAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred hhCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4458999985 5699999999999997 788887542111100 111112233344443
Q ss_pred ccc------ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 172 DVV------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 172 Dl~------~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
++. ...+.+.|+||.+-. +. .....+.+.|.+.++.+|+++|.+.||.
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~---------~~--------~~~~~L~~~c~~~~iPlI~~~s~G~~G~ 151 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNL---------PE--------STLLRLADVLWSANIPLLYVRSYGLYGY 151 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEecccCEEE
Confidence 331 234567888885431 11 1223466888888889999999988874
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.03 Score=53.40 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..+++|+|.|+ |.+|+.++..|.+.|. +++++.|..... ..+...+.. ...+..|-....+.++|+||++.+.
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra-~~La~~~~~--~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKA-QKITSAFRN--ASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHhcC--CeEecHHHHHHHhccCCEEEECcCC
Confidence 57789999996 9999999999999996 788887764322 223222221 2233334445567789999999863
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.18 Score=45.19 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=26.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEec
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDN 148 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r 148 (309)
++|.|.|++|.+|+.+++.+.+. +.+++.+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 58999999999999999999875 567766543
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=51.72 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
..+..+|+|.| .|++|+.+++.|+..|. +++++|.+.-...+. +.+.....+++.+
T Consensus 40 kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 40 RLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 45667999999 68999999999999997 777776432111100 0111122345555
Q ss_pred eccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 170 ~~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
...+.. ..+.++|+||.+.- ++ .+..-..+.+.|.+.++.+|..+..
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D---------~~------~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLD---------FF------QFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHCCCCEEEeecc
Confidence 555543 35678999997762 11 1111234667788888877776543
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.18 Score=39.28 Aligned_cols=30 Identities=27% Similarity=0.636 Sum_probs=25.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHC-CCeEEEEe
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVID 147 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~ 147 (309)
++.|+|++|.+|..+++.|.+. +.++..+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~ 31 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA 31 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence 4789999999999999999985 67887773
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.027 Score=54.25 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=44.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.||+|.+|..+++.|.+.|++|++++++......... .. .+. ..+-..+.+.++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~-~~---gv~--~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK-EL---GVE--YANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH-Hc---CCe--eccCHHHHhccCCEEEEec
Confidence 589999999999999999999999999999875432111111 11 111 1112233466789998876
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.2 Score=47.96 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=61.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC------eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD------EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~------~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
+|+|.| .|++|.++++.|+..|. +++++|.+.-...+. +.+.-...+++..
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 478888 68999999999999987 788887542211110 0011112233333
Q ss_pred ecccc--------ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 170 RHDVV--------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 170 ~~Dl~--------~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
...+. +..+.++|+|+.+. -|+..-..+-+.|...++.+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~al-----------------Dn~~aR~~vn~~C~~~~iPli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANAL-----------------DNVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence 33222 23456789998876 233444466778888887888877766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.29 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
++.++|+|.|+ |.+|+.++..|++.|. +++++|.+
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45678999996 8899999999999998 79998876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.079 Score=43.69 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=39.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+.+||+|+|.|.+..+|+.|+..|.++|..|+...... .+ ..+..++.|+||-.+|.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T----~~-----------------l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT----KN-----------------LQEITRRADIVVSAVGK 89 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS----SS-----------------HHHHHTTSSEEEE-SSS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC----Cc-----------------ccceeeeccEEeeeecc
Confidence 47899999999999999999999999999998876432 11 12234567888887763
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.075 Score=51.44 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..+++|+|.| .|..|.++++.|.+.|++|++.|.............+....+.+...+...+.+.++|.||...|+
T Consensus 12 ~~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 12 IKNKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred hcCCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCC
Confidence 4567899998 688999999999999999999986532221111011122234444444333445778999998775
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.085 Score=42.49 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=45.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+.+||+|+|.|.+.-+|..++..|.++|..|+.+..... | .++..+++|+||...|.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------------~-l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------------Q-LQSKVHDADVVVVGSPK 81 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------------C-HHHHHhhCCEEEEecCC
Confidence 3578999999999999999999999999999998874221 1 12345678888888763
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.67 Score=44.56 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=69.6
Q ss_pred EEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCCcCCh
Q 021681 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNP 200 (309)
Q Consensus 121 ITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~ 200 (309)
|+||+|.+|.++++.|...|++|+......... ..... .+++.+++-+. .. ...
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~---------------~~~~~~~~d~~---~~---~~~ 96 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW-----AAGWG---------------DRFGALVFDAT---GI---TDP 96 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccc-----ccCcC---------------CcccEEEEECC---CC---CCH
Confidence 778899999999999999999998865432200 00001 12332222221 00 111
Q ss_pred hHHHHHHHHHHHHHHHHHHH---cCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 021681 201 VKTIKTNVMGTLNMLGLAKR---VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA 277 (309)
Q Consensus 201 ~~~~~~Nv~gt~~ll~~a~~---~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~ 277 (309)
.. +.+....++.+.+ .+.+||+++|..... ....|+.+|.+.+.+++.++.+.
T Consensus 97 ~~-----l~~~~~~~~~~l~~l~~~griv~i~s~~~~~-------------------~~~~~~~akaal~gl~rsla~E~ 152 (450)
T PRK08261 97 AD-----LKALYEFFHPVLRSLAPCGRVVVLGRPPEAA-------------------ADPAAAAAQRALEGFTRSLGKEL 152 (450)
T ss_pred HH-----HHHHHHHHHHHHHhccCCCEEEEEccccccC-------------------CchHHHHHHHHHHHHHHHHHHHh
Confidence 11 1122223332222 234899999865431 11259999999999999998874
Q ss_pred --CCcEEEEEeCc
Q 021681 278 --GVEVRIARIFN 288 (309)
Q Consensus 278 --gi~~~ivRp~~ 288 (309)
++.+..+.++.
T Consensus 153 ~~gi~v~~i~~~~ 165 (450)
T PRK08261 153 RRGATAQLVYVAP 165 (450)
T ss_pred hcCCEEEEEecCC
Confidence 68888887753
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.027 Score=52.43 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccccc----CCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL----LEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~----~~~D~Vih~A 188 (309)
.+|++|||.||+|.+|++.++-....+ ..|+.+.. .+ ..+.....-.+..+++-+.|+.+... +++|+|+.|.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-~e-~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~v 233 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-KE-KLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCV 233 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-cc-hHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECC
Confidence 467899999999999999998777778 34444432 11 11111212122334444444544433 3699999999
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 234 g 234 (347)
T KOG1198|consen 234 G 234 (347)
T ss_pred C
Confidence 7
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.18 Score=44.12 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc------------------ccccc--CCCceEEEecc-
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN------------------LVHHF--RNPRFELIRHD- 172 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~------------------~~~~~--~~~~v~~~~~D- 172 (309)
+..+|+|.| -|++|++.++.|.+.|. +++++|-+.-...+. +.+.. -++.+++...+
T Consensus 29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence 445899999 58999999999999996 788877432111100 00000 12333332221
Q ss_pred -cccc-----ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 173 -VVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 173 -l~~~-----~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
++.+ ...++|+||.+- -|+..-..|+..|.+++. -++||.++-+
T Consensus 108 f~t~en~~~~~~~~~DyvIDai-----------------D~v~~Kv~Li~~c~~~ki--~vIss~Gag~ 157 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAI-----------------DSVRAKVALIAYCRRNKI--PVISSMGAGG 157 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEch-----------------hhhHHHHHHHHHHHHcCC--CEEeeccccC
Confidence 1222 334699999886 356666789999998866 4455555443
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.042 Score=57.95 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-e-------------EEEEecCCCCcccccccccCCCceEEEecccccc----
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-E-------------VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---- 176 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~-------------V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~---- 176 (309)
++|+|+|.|+ |++|+..++.|.+... + |.+.++.....+ .+.... +.++.+..|+.+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~-~la~~~--~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK-ETVEGI--ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH-HHHHhc--CCCceEEeecCCHHHHH
Confidence 5789999996 9999999999987642 3 666665432222 121111 2344555555443
Q ss_pred -ccCCCCEEEEccc
Q 021681 177 -ILLEVDQIYHLAC 189 (309)
Q Consensus 177 -~~~~~D~Vih~A~ 189 (309)
.+.++|+||++..
T Consensus 644 ~~v~~~DaVIsalP 657 (1042)
T PLN02819 644 KYVSQVDVVISLLP 657 (1042)
T ss_pred HhhcCCCEEEECCC
Confidence 3467999999974
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.038 Score=52.86 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+++|+|.|+ |.+|..+++.|...| .+|++++|......+ ....+.. ..+..+-..+.+.++|+||.+.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~-la~~~g~---~~i~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAED-LAKELGG---EAVKFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHcCC---eEeeHHHHHHHHhhCCEEEECCC
Confidence 56789999996 999999999999999 689988886433221 1111111 12333333445678999999875
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.16 Score=53.05 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=66.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFEL 168 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~ 168 (309)
..++..+|+|.| .|++|+.++..|+..|. +++++|.+.-...+. +.+......++.
T Consensus 328 ~kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~ 406 (989)
T PRK14852 328 RRLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRS 406 (989)
T ss_pred HHHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEE
Confidence 346778999999 68999999999999996 777776432111100 111112234444
Q ss_pred Eeccc----cccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 169 IRHDV----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 169 ~~~Dl----~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+...+ .++.++++|+||.+.. +. .+..-..+.+.|.+.++.+|..++.+.+|
T Consensus 407 ~~~~I~~en~~~fl~~~DiVVDa~D---------~~------~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 407 FPEGVAAETIDAFLKDVDLLVDGID---------FF------ALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred EecCCCHHHHHHHhhCCCEEEECCC---------Cc------cHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 54444 3335678999998762 11 11122356677888888888877755443
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.33 Score=44.48 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=60.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
++|.| ||||-+|+.+++-|.+++. +++++..........+ .+.. -++...++.+..+.++|++|. ||-
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i--~f~g--~~~~V~~l~~~~f~~vDia~f-ag~--- 74 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI--RFNN--KAVEQIAPEEVEWADFNYVFF-AGK--- 74 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEE--EECC--EEEEEEECCccCcccCCEEEE-cCH---
Confidence 47999 9999999999999988876 4444443211111111 1122 244445667777899999998 751
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
+ ........+.+.|+.+|=.||..-+.
T Consensus 75 -----~----------~s~~~ap~a~~aG~~VIDnSsa~Rmd 101 (322)
T PRK06901 75 -----M----------AQAEHLAQAAEAGCIVIDLYGICAAL 101 (322)
T ss_pred -----H----------HHHHHHHHHHHCCCEEEECChHhhCC
Confidence 0 13345566777787777777766443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.075 Score=48.28 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=44.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+||+|.|.|.++.+|..++..|+++|+.|++...... | ..+....+|+||-+.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------------~-l~e~~~~ADIVIsavg 210 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------------D-LPAVCRRADILVAAVG 210 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------------C-HHHHHhcCCEEEEecC
Confidence 468999999999999999999999999999998842110 1 2445567899998886
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.18 Score=38.60 Aligned_cols=64 Identities=27% Similarity=0.421 Sum_probs=45.5
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
|+|.|. |-+|..+++.|.+.+.+|++++.+....... ....+.++.+|.+++ .+.+++.|+-+.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-----~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEEL-----REEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-----HHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-----HhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 577785 7899999999999777999999754332211 122377899999887 346789888877
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.22 Score=47.87 Aligned_cols=75 Identities=19% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+.+|+|+|.| -|--|.++++.|.+.|++|++.|.+... ............+++..+...++....+|+||-+-|+
T Consensus 5 ~~~~kv~V~G-LG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 5 FQGKKVLVLG-LGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred ccCCEEEEEe-cccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCCC
Confidence 3488999999 6888999999999999999999965444 1111111123445555554444667789999998875
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.093 Score=45.30 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
.|.....++|+|+|.|| |-+|..=++.|++.|.+|+++.... ..++........+..++.+...+.+.+++.||-+
T Consensus 4 lPl~~~l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaA 79 (210)
T COG1648 4 LPLFLDLEGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAA 79 (210)
T ss_pred cceEEEcCCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEe
Confidence 46677789999999995 8999999999999999999987654 2222222233344455533434444556666654
Q ss_pred c
Q 021681 188 A 188 (309)
Q Consensus 188 A 188 (309)
.
T Consensus 80 t 80 (210)
T COG1648 80 T 80 (210)
T ss_pred C
Confidence 4
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.07 Score=45.58 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVI 144 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~ 144 (309)
|++.|.||+|.+|+.+++.|.+.|+.|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999886
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.16 Score=48.63 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
.|+|.|.| .|++|..++..|++.|++|++++++...
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~ 38 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHA 38 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence 46899998 6999999999999999999999986543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.049 Score=52.18 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+++|+|.|+ |.+|..+++.|...|. +|++++|....... +...+.. +.+..+-....+.++|+||.+.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~-la~~~g~---~~~~~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEE-LAEEFGG---EAIPLDELPEALAEADIVISSTG 251 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH-HHHHcCC---cEeeHHHHHHHhccCCEEEECCC
Confidence 57789999985 9999999999999997 78888875433221 1111111 23332323345678999999875
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.055 Score=52.65 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++|+++|+|+ |.+|++++..|.+.|++|++.+|...+... +.+.... .....+.. ..+.++|+||+|..
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~-la~~~~~---~~~~~~~~-~~l~~~DiVInatP 399 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEA-LASRCQG---KAFPLESL-PELHRIDIIINCLP 399 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhcc---ceechhHh-cccCCCCEEEEcCC
Confidence 46789999995 899999999999999999888775432221 1111111 11111111 12467999999974
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.059 Score=52.86 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+.+++|+|.|+ |.+|..+++.|...|. +|+++.|....... +...+....+.+...|-....+.++|+||.+.+
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~-La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAA-LREEFPDVEIIYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHhCCCceEeecHhhHHHHHhcCCEEEEccC
Confidence 56789999997 9999999999999996 78888876443322 222222222333333434456788999999875
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.074 Score=50.78 Aligned_cols=67 Identities=21% Similarity=0.136 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..|++|+|+|. |.||+.++..|...|.+|++++++..+....... .+++. + .++.++++|+||.+.|
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-----G~~v~--~-l~eal~~aDVVI~aTG 276 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-----GFRVM--T-MEEAAELGDIFVTATG 276 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-----CCEec--C-HHHHHhCCCEEEECCC
Confidence 57899999995 8999999999999999999988765432221111 12222 1 2445678899988765
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.082 Score=55.51 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcc--ccccccc--CCCceEEEecccccc-----------cc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEP-----------IL 178 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~-----------~~ 178 (309)
..|..+|+||-|+.|.+|+.-|..+|.+ +++..|..-+.. ....... ....+.+-..|++.. .+
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence 3478999999999999999999999985 444455422211 1111111 123333334454332 22
Q ss_pred CCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEecccc-ccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEV-YGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS~~v-y~~~~~~~~~E~~~~~~ 250 (309)
.-+--|||+|++-...-.++ ++...-+.-+.||.||=+..++... -||.+||.+. -|+.
T Consensus 1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~------------- 1913 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNA------------- 1913 (2376)
T ss_pred ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCC-------------
Confidence 33678999987543333332 3444555667788888777776653 4788888542 2221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCc
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~ 288 (309)
.-+.||.+..+.|.+++.- +..|++-+.+.-|.
T Consensus 1914 ----GQtNYG~aNS~MERiceqR-r~~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1914 ----GQTNYGLANSAMERICEQR-RHEGFPGTAIQWGA 1946 (2376)
T ss_pred ----cccccchhhHHHHHHHHHh-hhcCCCcceeeeec
Confidence 1245999999999998773 44577766666544
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.044 Score=49.87 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+.+++|+||+|.+|..+++.+...|.+|+++.+..
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 456899999999999999999999999998887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.042 Score=50.57 Aligned_cols=34 Identities=29% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
+.+|||+||+|.+|..+++.+...|. +|+++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 36999999999999999988888898 79888764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=46.52 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
...+|+|.|.| .|.||+.+++.|...|.+|++.++...... . .......+-.++.+.++|+|+.+.
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-~--------~~~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-G--------VQSFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-C--------ceeecccccHHHHHhcCCEEEECC
Confidence 46789999999 799999999999999999999886432111 0 011122344567788899999886
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.86 Score=40.78 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=39.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+++|.|.|. |.||+.+++.|.+. +.++..+...... .+........ .+. +..|+.+ ...++|+|+-|++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~-~~~-~~~d~~~-l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGE-AVR-VVSSVDA-LPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhcc-CCe-eeCCHHH-hccCCCEEEECCC
Confidence 368999997 99999999999886 3466555422111 1111111111 111 1223322 2356999999985
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.27 Score=46.91 Aligned_cols=34 Identities=38% Similarity=0.507 Sum_probs=30.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.| .|++|..++..|++.|++|++++++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 4688887 799999999999999999999997654
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.079 Score=43.65 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..||+++|+| =|.+|+.+++.|...|.+|++.+.++-..-+... ..+++.. .++++...|++|.+.|.
T Consensus 21 l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~-----dGf~v~~---~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 21 LAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAM-----DGFEVMT---LEEALRDADIFVTATGN 88 (162)
T ss_dssp -TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH-----TT-EEE----HHHHTTT-SEEEE-SSS
T ss_pred eCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh-----cCcEecC---HHHHHhhCCEEEECCCC
Confidence 5788999999 6999999999999999999999876433322222 2344332 45567789999998874
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.77 Score=35.61 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=48.2
Q ss_pred CeEEEEcCC---chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGA---GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGat---G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
|+|.|.|++ +..|..+++.|.+.|++|+.+.-.. ..+. ... .-.++.+ .-..+|.++-+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~----~~i~------G~~-~y~sl~e-~p~~iDlavv~~----- 63 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKG----GEIL------GIK-CYPSLAE-IPEPIDLAVVCV----- 63 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTC----SEET------TEE--BSSGGG-CSST-SEEEE-S-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCc----eEEC------cEE-eeccccC-CCCCCCEEEEEc-----
Confidence 579999987 7789999999999999999886321 1111 111 1123333 235688888775
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCc-EEEEec
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r-~v~iSS 230 (309)
+-.-+..+++.|.+.|++ +++.++
T Consensus 64 -------------~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 64 -------------PPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -------------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 223355678888888885 555555
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.11 Score=48.62 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=31.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
..+++++|+|.| .|++|+.+++.|++.|. +++++|.+
T Consensus 172 ~kL~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCC
Confidence 345778999999 58999999999999997 78887754
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.21 Score=42.43 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
|.+.+.+||+|+|.|.+.-+|+.|+..|+++|+.|++++.
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~ 94 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDI 94 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEec
Confidence 4456789999999999999999999999999999998864
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.047 Score=51.35 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEE--EeccccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFEL--IRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~--~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+++|+|.|+ |-+|...++.|...|.+|+++++...... .+...+.. .+.. ...+...+.+.++|+||++++.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~-~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLR-QLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHH-HHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 4457999986 89999999999999999999987543221 11111111 1111 1112234456789999998753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.21 Score=48.15 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-ccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+.+|+|+|+|+ |..|.++++.|.++|++|++.+...... ...+... ...+.+...+..+..+.++|.||...|+.
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKM--FDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45789999997 5899999999999999999988643321 1111110 02344444443344456799999998853
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.063 Score=49.43 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.|.+|+|+||+|.+|..+++.+...|.+|+++.+..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999999999999988888899988877643
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.3 Score=35.62 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEec
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDN 148 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r 148 (309)
..+++++|.|+ |.+|+.++..|.+. +.+|.+.++
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56679999997 99999999999998 456766654
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.12 Score=46.51 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=45.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+..||+|.|.|.+|.+|..++..|+++|+.|++... +.. | ..+...++|+||-+.|.
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s----~t~----------------~-l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS----RTR----------------N-LAEVARKADILVVAIGR 211 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC----CCC----------------C-HHHHHhhCCEEEEecCc
Confidence 3468999999999999999999999999999988621 100 1 23345678999998863
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.22 Score=45.05 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~ 153 (309)
++|.|.|+ |.+|..++..|+..|++|++.+++....
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 47999985 9999999999999999999999876543
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=48.16 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=63.3
Q ss_pred ccCCCCEEEEcccCCCCCC--CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+.+++.+|++-|....-. ..... -.+...-+..|++... +.+. ++|.++|...
T Consensus 200 ~l~~i~t~is~LGsts~~a~~s~~~~---~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~---------------- 260 (410)
T PF08732_consen 200 SLDDIKTMISTLGSTSAQAKSSKAAR---HKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNN---------------- 260 (410)
T ss_pred chhhhhhheecCCCChhhccccccch---hhccccccHHHHHHhhhhhccCCCceEEEEEecCc----------------
Confidence 5566788898877432111 11111 1233444455666655 4444 7999998653
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.....+.+|..+|...|.-+.......=-..+|+|||.+.|..+.
T Consensus 261 -~~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 261 -NAISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred -chhhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 234556789999999999988754322246899999999998765
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.27 Score=46.12 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|-|.| +||+|....--|++.||+|+|+|.+..
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 6788888 899999999999999999999997644
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.14 Score=46.18 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+..||+++|.|.+..+|+.|+..|+++|+.|+++..... | ..+..++.|+||..+|.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------~-l~~~~~~ADIvi~avG~ 212 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------N-LRHHVRNADLLVVAVGK 212 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------C-HHHHHhhCCEEEEcCCC
Confidence 468999999999999999999999999999998864211 1 23345678999988863
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.07 Score=48.29 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC----CCceEEEecccc--ccccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVV--EPILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~--~~~~~~~D~Vih 186 (309)
.++|+++|.|+ |+.|++++..|++.|. +|++++|...+.+. +.+.+. ...+.. .+.. +..+.++|+|||
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~-La~~~~~~~~~~~~~~--~~~~~~~~~~~~~divIN 200 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQA-LADVINNAVGREAVVG--VDARGIEDVIAAADGVVN 200 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH-HHHHHhhccCcceEEe--cCHhHHHHHHhhcCEEEE
Confidence 45689999995 8999999999999996 78888876443322 221111 111222 2221 223457899999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
+..
T Consensus 201 aTp 203 (283)
T PRK14027 201 ATP 203 (283)
T ss_pred cCC
Confidence 864
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.14 Score=46.86 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+|+|.|.| +|.+|..++..|.+.|++|++.+|..
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 356899997 69999999999999999999988754
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.094 Score=49.71 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+++++|||.|| |=+|.-+++.|.+.|. +|+++.|...+.. .+...+ ..+++..|-....+.++|+||.+.+
T Consensus 176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~---~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKL---GAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHh---CCeeecHHHHHHhhhhCCEEEEecC
Confidence 57889999995 8999999999999995 7777766443322 222222 2556666777778889999999875
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.88 Score=40.87 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=41.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++|.|.| .|.||+.+++.|.+. +.++..+......+.+.....+.... ..+-.++.+.++|+|+-++.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~----~~~~~eell~~~D~Vvi~tp 76 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPP----PVVPLDQLATHADIVVEAAP 76 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCc----ccCCHHHHhcCCCEEEECCC
Confidence 46899999 699999999999874 56777554322212121211111111 11223444567999999984
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.21 Score=45.13 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
++|.|.|+ |.+|..++..|++.|++|++++++...
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~ 36 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQ 36 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 47899995 999999999999999999999986543
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=93.89 E-value=1 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=29.8
Q ss_pred CeEEEEcC-CchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGa-tG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
..|+|.|. +-=+++.++.-|-++|+-|++...+.
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ 38 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSA 38 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCH
Confidence 37899995 78999999999999999999988654
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.096 Score=48.04 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+++|+|.|+ |-+|..+++.|...| .+|++++|...+..+ +...+.. ..+..+-..+.+.++|+||.+.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~-la~~~g~---~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEE-LAKELGG---NAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHcCC---eEEeHHHHHHHHhcCCEEEECCC
Confidence 46789999996 999999999999876 478888875433222 2222221 33333333445678999999986
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.25 Score=44.64 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++|.|.| +|.+|..++..|++.|++|++++++..
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799998 599999999999999999999998644
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.37 Score=44.85 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=55.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCccccccc-----c----------cCCCceEEEeccccccccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVH-----H----------FRNPRFELIRHDVVEPILLE 180 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~-----~----------~~~~~v~~~~~Dl~~~~~~~ 180 (309)
++|.|.|. |-||+.+++.+.++. .+|+++..........+.. . +.... +...+..+..+.+
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~--i~V~~~~~el~~~ 78 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAG--IPVAGTIEDLLEK 78 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCc--eEEcCChhHhhcc
Confidence 58999998 999999999888764 4777765422110000000 0 01111 1112223345568
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+|+||-+++.. .+...++.+.+.|+++|+.++.
T Consensus 79 vDVVIdaT~~~------------------~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGG------------------VGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCch------------------hhHHHHHHHHHCCCEEEEcCCC
Confidence 99999998521 1234556777888777777774
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=47.24 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=50.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC---c-e-EEEeccccccccCCCCEEE
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP---R-F-ELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~---~-v-~~~~~Dl~~~~~~~~D~Vi 185 (309)
.....||++.|.| .|-||+.+++.|...|.+|++.++........... +... . + .....+-.++.+.++|+|+
T Consensus 154 ~~~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 154 GDTLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhc-cccccccccccccCcccCHHHHHhhCCEEE
Confidence 3457899999999 69999999999999999999988753211110000 0000 0 0 0112344567788899999
Q ss_pred Eccc
Q 021681 186 HLAC 189 (309)
Q Consensus 186 h~A~ 189 (309)
.+..
T Consensus 232 l~lP 235 (347)
T PLN02928 232 LCCT 235 (347)
T ss_pred ECCC
Confidence 8873
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.12 Score=48.84 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+.|+|||||++..+|..+++.|.+.|++|++++...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 458999999999999999999999999999998753
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.16 Score=47.08 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=47.9
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
....||+|.|.| .|.||+.+++.|...|.+|++.++...... ... ..+. .+-.++.+.++|+|+.+.
T Consensus 146 ~~L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~---~~~~---~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 146 YDVYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEA---EKE---LGAE---YRPLEELLRESDFVSLHV 212 (333)
T ss_pred cCCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhh---HHH---cCCE---ecCHHHHHhhCCEEEEeC
Confidence 457899999999 599999999999999999998887532211 000 0111 123456778899999887
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.64 Score=42.18 Aligned_cols=31 Identities=39% Similarity=0.495 Sum_probs=26.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
+|||.| .|++|.++++.|+..|. +++++|.+
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 478888 68999999999999997 78887754
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.11 Score=46.92 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=46.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccC-CCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~-~~D~Vih~A~~ 190 (309)
..++++++|.|| |+.+++++..|++.|. +++++.|...+.++ +.+.+......+...+..+.... ..|+|||+...
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~-La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEE-LADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 346789999995 8899999999999995 89999886544332 22222211111111111111111 68999998654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.19 Score=45.41 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
...||+|+|.|.+..+|+.|+..|+++|+.|+++..... | ..+..+++|+||.++|.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------~-l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------D-LKKYTLDADILVVATGV 217 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------C-HHHHHhhCCEEEEccCC
Confidence 468999999999999999999999999999988763211 1 12234678999988874
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.35 Score=46.83 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
-|...+.++|+|||.|| |-++..=++.|++.|.+|+++..... +++.......++.++..+.....+.++++||-+
T Consensus 4 ~P~~~~l~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~visp~~~---~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGG-GDVAERKARLLLDAGARLTVNALAFI---PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred eceEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 46677789999999995 88988888999999999999864322 222222234577888877777778888887766
Q ss_pred c
Q 021681 188 A 188 (309)
Q Consensus 188 A 188 (309)
.
T Consensus 80 t 80 (457)
T PRK10637 80 T 80 (457)
T ss_pred C
Confidence 5
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.15 Score=49.18 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..|++|+|.| .|.||+.+++.+...|.+|++++++.......... .+..+ + .++.+...|+||.+.+
T Consensus 252 LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~-----G~~vv--~-leEal~~ADVVI~tTG 318 (477)
T PLN02494 252 IAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALME-----GYQVL--T-LEDVVSEADIFVTTTG 318 (477)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc-----CCeec--c-HHHHHhhCCEEEECCC
Confidence 5789999999 58999999999999999999988764332221111 11221 2 2345566788887665
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.076 Score=49.37 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.+.+|+|+||+|.+|..+++.+...|.+|++++.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46799999999999999998888889998887654
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.68 Score=41.54 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=25.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI 146 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i 146 (309)
+|+|.|++|-+|+++++.+.+.+.+++..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEee
Confidence 69999999999999999998877677664
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.18 Score=46.67 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=47.4
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
....+|+|.|.| .|.||+.+++.|...|.+|++.++....... ... ..+-.++.+.++|+|+.+.
T Consensus 142 ~~l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---------~~~--~~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 142 KPVKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLD---------FLT--YKDSVKEAIKDADIISLHV 206 (330)
T ss_pred cccCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---------hhh--ccCCHHHHHhcCCEEEEeC
Confidence 357889999998 6999999999999999999999875422110 011 1223456778899888776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 309 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 2e-75 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 6e-73 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 1e-17 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 1e-14 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 3e-14 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 3e-13 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 1e-12 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 4e-10 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 4e-10 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 4e-10 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 8e-10 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 8e-10 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 8e-10 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 9e-10 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 1e-09 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 2e-09 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 2e-09 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 4e-09 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-08 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 1e-08 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 1e-08 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 3e-08 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 3e-08 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 9e-08 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 2e-07 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-07 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 2e-07 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-07 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 2e-07 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-07 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 3e-07 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-07 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-07 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 4e-07 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-07 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-07 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 6e-07 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 6e-07 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-07 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-07 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 9e-07 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 9e-07 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-06 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 1e-06 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-06 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 2e-06 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 2e-06 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 2e-06 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 2e-06 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 8e-06 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-05 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 6e-05 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 6e-05 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 6e-05 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-135
Identities = 140/217 (64%), Positives = 165/217 (76%)
Query: 92 SFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151
S H S G + + + R RI++TGGAGFVGSHL DKL+ G EV V+DNFFT
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT 62
Query: 152 GRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGT 211
GRK N+ H + FELI HDVVEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GT
Sbjct: 63 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 122
Query: 212 LNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271
LNMLGLAKRVGA+ LL STSEVYGDP HPQ E YWG+VNPIG R+CYDEGKR AET+
Sbjct: 123 LNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCY 182
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308
Y + GVEVR+ARIFNT+GPRM ++DGRVVSNF+ Q
Sbjct: 183 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQ 219
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-118
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
+R+++ G GF+G+HL ++L+ EV +D D + +P F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 174 ----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+E + + D + L A+P+ Y NP++ + + L ++ + + + S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 230 TSEVYGDPLEHPQKETYWG-NVNPIGE-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
TSEVYG + E + V P+ + R Y K+ + + Y G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 288 NTYGPRM------CLDDGRVVSNFVAQ 308
N GPR+ + R ++ +
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILN 203
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 339 bits (870), Expect = e-116
Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 22/230 (9%)
Query: 95 FHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154
H G + + ++++ G GF+G HL ++++ D + + T R
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL 62
Query: 155 DNLVHHFRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNV 208
+LV H R D+ VE + + D I L A+P Y P++ + +
Sbjct: 63 GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDF 119
Query: 209 MGTLNMLGLAKRVGAKFLLTSTSEVYG---DPLEHPQKETY-WGNVNPIGERSCYDEGKR 264
L ++ A + G + STSEVYG D P +G +N R Y K+
Sbjct: 120 EANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--RWIYACSKQ 177
Query: 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMC------LDDGRVVSNFVAQ 308
+ + Y G+ + R FN GP + RVV+ F+
Sbjct: 178 LMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 226
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = e-107
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 12/205 (5%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
L+I +TG GF+ SH+ +L G VI D + +++ F L+ V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRV 83
Query: 174 VE---PILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+E + VD +++LA + + + N + N M + NM+ A+ G +F
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S++ +Y + + + P + + K E L Y++ G+E RI R
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRF 203
Query: 287 FNTYGPRMCLDDGR--VVSNFVAQV 309
N YGP GR + F +
Sbjct: 204 HNIYGPFGTWKGGREKAPAAFCRKA 228
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 1e-96
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 26/238 (10%)
Query: 94 QFHRTSSFGAKTGRVPVGIGRRRL---RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF 149
H +S + +PV + +L ++V GGAGFVGS+LV +L++ G ++V V+DN
Sbjct: 7 HHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL 66
Query: 150 FTGRKDNLVHHFRNPRFELIRHDVVEPILL-----EVDQIYHLACPASPVHYKYNPVKTI 204
+ K N+ H P + + LL E D ++HLA ++P+
Sbjct: 67 LSAEKINVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH 123
Query: 205 KTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGERSCYDE 261
+ N + TL + K K + ++ + + + V+ S Y
Sbjct: 124 ENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM 183
Query: 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGR-----------VVSNFVAQ 308
K E ++ YH+ + AR N YGP L GR V F+ +
Sbjct: 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYK 241
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 1e-87
Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 18/196 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK---DNLVHHFRNPRFELIRHDVV 174
RI++TGGAGF+G HL L+ G+EV V+D+ + P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS 68
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV 233
+V +YHLA S P+ + NV ++L L VG K ++ ST EV
Sbjct: 69 -----DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGSTCEV 122
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE-VRIARIFNTYGP 292
YG P E +P+ RS Y K E + + R + V I R FN YGP
Sbjct: 123 YGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGP 177
Query: 293 RMCLDDGRVVSNFVAQ 308
+V A
Sbjct: 178 GE--RPDALVPRLCAN 191
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 3e-76
Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RIVVTGGAGF+GSHLVDKL++ G EV+V+DN +GR++ + NP EL D+ +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYS 56
Query: 178 LLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
D ++H A P+ NV+ T N+L A++ G + + S+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGD P E P S Y K E + Y R GV R N GPR
Sbjct: 117 YGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 294 MCLDDGRVVSNFVAQ 308
+ V+ +F+ +
Sbjct: 172 L---RHGVIYDFIMK 183
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-53
Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 24/197 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I VTGG GF+G ++V+ + + G+ I++ + N +E D
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIND--------YEYRVSDYTLED 55
Query: 178 LLE----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L+ VD + HLA + N + T N+ + ST
Sbjct: 56 LINQLNDVDAVVHLAATRG-SQG---KISEFHDNEILTQNLYDACYENNISNIVYASTIS 111
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
Y D P E P Y K E + Y R G+ ++ R + YG
Sbjct: 112 AYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGF 166
Query: 293 RMCLDDGRVVSNFVAQV 309
+ +++ F Q
Sbjct: 167 NE--KNNYMINRFFRQA 181
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 5e-49
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++ L+ +V+ +DNF TG + NL V + F+ I+
Sbjct: 29 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 88
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-F 225
D+ VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 89 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 148
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
++S YGD P+ E G P+ S Y K E + R G R
Sbjct: 149 TYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLR 203
Query: 286 IFNTYGPRMCLD--DGRVVSNFVAQV 309
FN +G R + V+ + + +
Sbjct: 204 YFNVFGRRQDPNGAYAAVIPKWTSSM 229
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 1e-48
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
IVVTGGAGF+GSH+VDKL + +E++VIDN +G ++ + N L++ D+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSE-SNEIVVIDNLSSGNEEFV-----NEAARLVKADLAADD 56
Query: 178 LLE----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
+ + ++++H+A NP + + NV+ T +L ++ G + TSTS
Sbjct: 57 IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTST 116
Query: 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYG+ P E Y +PI S Y K E L Y ++ I R N G
Sbjct: 117 VYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGR 171
Query: 293 RMCLDDGRVVSNFVAQV 309
R V+ +F+ ++
Sbjct: 172 RS---THGVIYDFIMKL 185
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 9e-48
Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 42/193 (21%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
IV+TG GFVG +L L D + + + + +E
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELES 42
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
LL+ D I HLA P + + NV ++L + R K + +S +
Sbjct: 43 ALLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296
++P Y E K E L +Y G V I R N +G
Sbjct: 99 Q-DNP-----------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKP 140
Query: 297 DDGRVVSNFVAQV 309
+ V++ F ++
Sbjct: 141 NYNSVIATFCYKI 153
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 1e-45
Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 82 HALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD 141
+ +Q Q+ + S ++ P RRR R+++ G GF+G+HL ++L+
Sbjct: 285 ITMQGSQLAQTLGLVQGSRLNSQ----PACTARRRTRVLILGVNGFIGNHLTERLLREDH 340
Query: 142 -EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPILLEVDQIYHLACPASPV 194
EV +D D + +P F + D+ +E + + D + L A+P+
Sbjct: 341 YEVYGLDI----GSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPI 396
Query: 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNV-NPI 253
Y NP++ + + L ++ + + + STSEVYG + E + + P+
Sbjct: 397 EYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPV 456
Query: 254 G-ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CLDDGRVVSNFV 306
R Y K+ + + Y G++ + R FN GPR+ + R ++ +
Sbjct: 457 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 516
Query: 307 AQV 309
+
Sbjct: 517 LNL 519
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-45
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
++ +TG G +GSH+ + L++RGD+V+ IDNF TGR+++L H P + + +
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PNLTFVEGSIADHA 79
Query: 178 LLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
L+ D + H A + TN +G N++ AK+ F+
Sbjct: 80 LVNQLIGDLQPDAVVHTAASYKDPD---DWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQ 136
Query: 230 TSEVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
T+ YG P++ P + + NP S Y K E Y +G++ R+ N
Sbjct: 137 TALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED----YLEYSGLDFVTFRLAN 188
Query: 289 TYGPRMCLDDGRVVSNFVAQV 309
GPR + F ++
Sbjct: 189 VVGPRNVSG---PLPIFFQRL 206
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-44
Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++KL+ VI +DNF TG + NL V + RF I
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVGAK- 224
D+ E ++ VD + H A S V +P+ T TN+ G LN+L AK +
Sbjct: 87 DIRDLTTCEQVMKGVDHVLHQAALGS-VPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F ++S YGD P+ E G NP+ S Y K E Y R G +
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGL 200
Query: 285 RIFNTYGPRM 294
R FN +G R
Sbjct: 201 RYFNVFGRRQ 210
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-42
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 27/197 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTG AG VGS + L EV + D G + E++ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAH--------EEIVACDLADAQ 55
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPV-KTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
V ++ + D I HL V P ++ N++G N+ A+ +G + S+
Sbjct: 56 AVHDLVKDCDGIIHLG--GVSV---ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS 110
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
+ G + +T P S Y K E L Y+ +E RI + +
Sbjct: 111 NHTIGYYPRTTRIDTEVP-RRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
Query: 291 GPRMCLDDGRVVSNFVA 307
D R+++ +++
Sbjct: 167 PKPK---DARMMATWLS 180
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 4e-42
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP 176
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV N + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 177 ILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
I+ V+ I+H +S + + + N + +L FL S++
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
YG + P+ + Y K + A ++ R FN YG
Sbjct: 118 ATYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYG 172
Query: 292 PR 293
PR
Sbjct: 173 PR 174
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 5e-42
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVE 175
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV N + + D +
Sbjct: 48 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLI 105
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
I+ V+ I+H +S + + + N + +L FL S+
Sbjct: 106 QIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASS 163
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
+ YG + P+ + + K + A ++ R FN Y
Sbjct: 164 AATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 218
Query: 291 GPRM 294
GPR
Sbjct: 219 GPRE 222
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-41
Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVH-----HFRN---PRFE 167
I++TGGAGFVGS+L + +V+V+D F + + HF+N + E
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 168 LIRHDVVEPILLE------VDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
+I D+ P+ L D ++H A + + N +KTN LN+L +A+
Sbjct: 72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML---NQELVMKTNYQAFLNLLEIARS 128
Query: 221 VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE 280
AK + S++ VYG+ + P N +P + Y K + + +
Sbjct: 129 KKAKVIYASSAGVYGNT-KAPNVVGK--NESPE---NVYGFSKLCMDEFVLSHS--NDNV 180
Query: 281 VRIARIFNTYGPRMCLDDGR---VVSNFVAQV 309
R FN YGPR + +V
Sbjct: 181 QVGLRYFNVYGPREF-YKEKTASMVLQLALGA 211
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-38
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTG +G +G+ LV L ++ G + ++ + + I DV
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR---------DTGGIKFITLDVSNRD 52
Query: 178 LLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTS 229
++ +D I+HLA S + +P K N+ GT N+L AK+ K ++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILS-AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 230 TSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
T V+G + ++ R+ + K AE L Y+ G++VR R
Sbjct: 112 TIGVFGPETPKNKVP----SITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 290 YGPRM 294
+
Sbjct: 168 ISYKA 172
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 3e-37
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 20/185 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+I++ G G +G+ L KL G E ++ + D + + FE++ + ++
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV----NSGPFEVV--NALDF 57
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+E + IY +A S + NP N+ ++L LAK K
Sbjct: 58 NQIEHLVEVHKITDIYLMAALLS-ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWP 116
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S+ V+G Y + P + Y K+ E YH GV+VR R
Sbjct: 117 SSIAVFGPTTPKENTPQY-TIMEPS---TVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 289 TYGPR 293
Sbjct: 173 LISWS 177
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 3e-37
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 28/190 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R++VTGGAGF+GSH+V+ L+ RG EV V+DN TG+++N+ R D+ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKE 56
Query: 178 LLE-------VDQIYHLAC----PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KF 225
+E + H A S V +PV + N++G LN+L ++ G K
Sbjct: 57 GVERAFREFRPTHVSHQAAQASVKVS-VE---DPVLDFEVNLLGGLNLLEACRQYGVEKL 112
Query: 226 LLTSTSE-VYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRI 283
+ ST +YG+ P +ET+ P S Y K E Y + G++
Sbjct: 113 VFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKWVS 167
Query: 284 ARIFNTYGPR 293
R N YGPR
Sbjct: 168 LRYGNVYGPR 177
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-36
Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 27/196 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTG AG +G + ++L + + + D L P E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL------SPLDPA--GPNEECVQCDLADAN 56
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
V ++ D I HL V + + ++ N++G N+ A+ G + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFEQI--LQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
G P P Y K E L Y G E + RI +
Sbjct: 113 HTIGYYPQTERLGPDVP--ARPD---GLYGVSKCFGENLARMYFDKFGQETALVRIGSCT 167
Query: 291 GPRMCLDDGRVVSNFV 306
++ R++S +
Sbjct: 168 PEP---NNYRMLSTWF 180
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-36
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAG +GS+L++ + +G E++VIDNF TG+++ L +I V +
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---PVAGLSVIEGSVTDAG 78
Query: 178 LLE-------VDQIYHLA----CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-F 225
LLE + H A P NV G++N+ A + G K
Sbjct: 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAGVKRL 131
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
L T+ YG P P P + Y K E M V V R
Sbjct: 132 LNFQTALCYGRPATVPIPIDS--PTAPF---TSYGISKTAGEAFLMMS----DVPVVSLR 182
Query: 286 IFNTYGPRMCLDDGR--VVSNFVAQV 309
+ N GPR + F ++
Sbjct: 183 LANVTGPR-----LAIGPIPTFYKRL 203
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 30/195 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTGRKDNLVHHFRNPRFELIR 170
I + G AG VG L +L+ G ++ +ID F + +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGAVDARA 70
Query: 171 HDVVEPILLE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA- 223
D+ P E D I+HLA S + K + N+ GT + +
Sbjct: 71 ADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIRIANGK 129
Query: 224 -----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
+ + TS+ V+G PL +P + + P+ + Y K E L DY R
Sbjct: 130 DGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSDYSRRGF 184
Query: 279 VEVRIARIFNTYGPR 293
+ R+
Sbjct: 185 FDGIGIRLPTICIRP 199
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDV--- 173
++++TGG GF+GS+L + +G ++IV DN G DNL FE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPILLE--VDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR--VGAK 224
V ++ + D +HL A V NP + NV GTLN+L ++
Sbjct: 63 NDVTRLITKYMPDSCFHL---AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG------------KRTAETLTMD 272
+ +ST++VYGD LE + + + + YDE K A+ +D
Sbjct: 120 IIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 273 YHRGAGVEVRIARIFNTYGPR 293
Y R G+ + R + YG R
Sbjct: 179 YARIFGLNTVVFRHSSMYGGR 199
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-28
Identities = 41/217 (18%), Positives = 60/217 (27%), Gaps = 44/217 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------------------LVH 159
R++V GG G+ G L + EV ++DN D+
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 160 HFRNPRFELIRHDVVEPILLE-------VDQIYHLACPASP-----VHYKYNPVKTIKTN 207
EL D+ + L D + H + + V T N
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVYTQHNN 130
Query: 208 VMGTLNMLGLAKR--VGAKFLLTSTSEVYGDPLEHPQKETY---------WGNVNPIGER 256
V+GTLN+L K + T YG P +E Y P
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP-NIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
S Y K + G+ YG +
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK 226
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-28
Identities = 31/211 (14%), Positives = 64/211 (30%), Gaps = 19/211 (9%)
Query: 106 GRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR 165
P+ ++ V G G +G H + G ++++I R + +
Sbjct: 3 DEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH-----RPSSQIQRLAYLE 57
Query: 166 FELIRHDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
E ++++ LE +D + A ++ + + + T +
Sbjct: 58 PECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEE--VASALGQTNPFYAACLQ 115
Query: 221 VGAK-FLLTSTSEVYG-DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
L ++ P P E + + P G +S Y K + + R G
Sbjct: 116 ARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQAR-NG 173
Query: 279 VEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309
+ V I G D G + +
Sbjct: 174 LPVVIGIPGMVLGEL---DIGPTTGRVITAI 201
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 7e-24
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 28/194 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIR 170
R++VTGGAGF+GSH V +L+ DEVIV+D+ + G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDV-----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKR 220
D+ + L VD I H A A S V +TNV GT +L A
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFA--AESHVDRSIA---GASVFTETNVQGTQTLLQCAVD 116
Query: 221 VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGV 279
G + + ST++VYG ++ W +P+ S Y K ++ + YHR G+
Sbjct: 117 AGVGRVVHVSTNQVYGS-IDSG----SWTESSPLEPNSPYAASKAGSDLVARAYHRTYGL 171
Query: 280 EVRIARIFNTYGPR 293
+VRI R N YGP
Sbjct: 172 DVRITRCCNNYGPY 185
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-22
Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
I+VTGGAGF+GS+ V + + V V+D + G K NL R EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIA 64
Query: 174 ----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
V+ + + D I H A A S + +P I TN +GT +L A++ +
Sbjct: 65 DAELVDKLAAKADAIVHYA--AESHNDNSLN---DPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 225 FLLTSTSEVYGD-PLEHPQKETYWGNV------NPIGERSCYDEGKRTAETLTMDYHRGA 277
F ST EVYGD PL G S Y K ++ + + R
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 278 GVEVRIARIFNTYGP 292
GV+ I+ N YGP
Sbjct: 180 GVKATISNCSNNYGP 194
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 4e-22
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 27/191 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
+++VTGG GF+GS+ + ++++ EVI ID + NL +PR+ ++ DV
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVA 64
Query: 174 ----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKR--VG 222
V+ ++ +VD + HLA A S V +P + +NV+GT +L +R
Sbjct: 65 DYELVKELVRKVDGVVHLA--AESHVDRSIS---SPEIFLHSNVIGTYTLLESIRRENPE 119
Query: 223 AKFLLTSTSEVYGDPLEHPQ-KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
+F+ ST EVYGD + E + + S Y K ++ L + + R +
Sbjct: 120 VRFVHVSTDEVYGD-ILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNA 173
Query: 282 RIARIFNTYGP 292
I R N YGP
Sbjct: 174 SITRCTNNYGP 184
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 89.0 bits (222), Expect = 1e-20
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 36/187 (19%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I++ GGAG++GSH V KL+D G V+V+DN TG +D + + D+ +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAF 58
Query: 179 LE-------VDQIYHLACPAS---------PVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
L ++ + H A A P+ Y N NV G L +L +
Sbjct: 59 LRDVFTQENIEAVMHFA--ADSLVGVSMEKPLQYYNN-------NVYGALCLLEVMDEFK 109
Query: 223 AK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEV 281
F+ +ST+ YG+ E NP + Y E K E + Y + + +
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET--MTNPT---NTYGETKLAIEKMLHWYSQASNLRY 164
Query: 282 RIARIFN 288
+I R FN
Sbjct: 165 KIFRYFN 171
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 6e-20
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 27/214 (12%)
Query: 96 HRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTG 152
H S G G + + I+VTGGAGF+GS+ V ++ ++I D ++G
Sbjct: 4 HHHHSSGVDLGTENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG 63
Query: 153 RKDNLVHHFRNPRFELIRHDVVEPILLE-------VDQIYHLACPA-SPV----HYKYNP 200
+N+ +P + ++ ++ LLE V I + A A S V NP
Sbjct: 64 NLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRSIE---NP 118
Query: 201 VKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD-PLEHPQKETYWGNVNPIGERSC 258
+ TNV+GT+ +L L K+ + ST EVYG E P+ S
Sbjct: 119 IPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSP 173
Query: 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
Y K +A+ + + Y++ + V + R N YGP
Sbjct: 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGP 207
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 6e-18
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R ++TG AGFVG +L + L ++ EV + N+ +++ V+ +
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMIS----LDIMDSQRVKKV 69
Query: 178 LLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTS 231
+ ++ D I+HLA A S V + N T TNV GTL++L + + L +S
Sbjct: 70 ISDIKPDYIFHLA--AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSS 127
Query: 232 EVYG--DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
E YG P E P E N + S Y K + L Y + G+++ R FN
Sbjct: 128 EEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNH 182
Query: 290 YGPR 293
GP
Sbjct: 183 IGPG 186
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 2e-17
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV-- 173
+I++TGGAGF+GS +V +I D V+ ID + G ++L + R+ D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 174 ---VEPILLE--VDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNML-------- 215
+ I + D + HLA A S V P I+TN++GT +L
Sbjct: 62 SAEITRIFEQYQPDAVMHLA--AESHVDRSIT---GPAAFIETNIVGTYALLEVARKYWS 116
Query: 216 --GLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE------RSCYDEGKRTAE 267
G K+ +F ST EVYGD L HP + + E S Y K +++
Sbjct: 117 ALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSD 175
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGP 292
L + R G+ + N YGP
Sbjct: 176 HLVRAWRRTYGLPTIVTNCSNNYGP 200
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 2e-16
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 32/190 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
I+VTGGAG++GSH +L+ G +V++ DN +++ + + DV +
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Query: 176 PILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
L + H A A P+ Y N N+ L++L + +
Sbjct: 67 ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRVMRER 119
Query: 222 GAKFLLTSTS-EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE 280
K ++ S+S VYG P P ET+ P+ + Y + K AE + D A
Sbjct: 120 AVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEA-ADPS 173
Query: 281 VRIA--RIFN 288
R+A R FN
Sbjct: 174 WRVATLRYFN 183
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 3e-15
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
R++VTGG+G++GSH +L+ G +VI++DN ++ L + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PILLE-------VDQIYHLAC-------PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMRAA 114
Query: 222 GAKFLLTSTSE-VYGDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAETLTMDYHRGAGV 279
K + S+S VYGD + P E++ P G +S Y + K E + D + A
Sbjct: 115 NVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQK-AQP 168
Query: 280 EVRIA--RIFN 288
+ IA R FN
Sbjct: 169 DWSIALLRYFN 179
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-15
Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 35/194 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
++VTGGAG++GSH V +LI+ G + +V DN D++ + D+ +
Sbjct: 13 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 176 PILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
LE +D + H A P+ Y Y N++GT+ +L L ++
Sbjct: 73 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLELMQQY 125
Query: 222 GAKFLLTSTSE-VYGDPLEHPQK----ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG 276
+ S+S VYGD P E P+G + Y K E + D +
Sbjct: 126 NVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILNDLYNS 180
Query: 277 AGVEVRIA--RIFN 288
+ A R FN
Sbjct: 181 DKKSWKFAILRYFN 194
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 4e-15
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--------VHHFRNPRFELI 169
+++VTGGAG++GSH V +L++ G +VIDNF + V E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNML 215
D+++ L+ + H A P+ Y N+ GT+ +L
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGTIQLL 116
Query: 216 GLAKRVGAKFLLTSTSE-VYGDPLEHPQKETYWGNVNPIGERSC-YDEGKRTAETLTMDY 273
+ K G K L+ S+S VYG+P P E + P G + Y + K E + D
Sbjct: 117 EIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEMIRDL 171
Query: 274 HRGAGVEVRIA--RIFN 288
+ A R FN
Sbjct: 172 CQ-ADKTWNAVLLRYFN 187
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 38/205 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
R++V GGAG++GSH V L+ D V+++D+ + R ++
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 177 ILLEV----------------DQIYHLACPASPV-H---YKY------NPVKTIKTNVMG 210
+ ++ P V H + +P+K NV+G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 211 TLNMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGER------SCYDEGK 263
L +L + +S++ ++G+ P + N PI S Y E K
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGN----PTMGSVSTNAEPIDINAKKSPESPYGESK 179
Query: 264 RTAETLTMDYHRGAGVEVRIARIFN 288
AE + D G++ R FN
Sbjct: 180 LIAERMIRDCAEAYGIKGICLRYFN 204
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP---RFE-LIRH 171
++VTG GFV SH+V++L++ G +V + NL + RFE +
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARS---ASKLANLQKRWDAKYPGRFETAVVE 69
Query: 172 DVVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--K 224
D+++ ++ + H+ AS V + + + + GTLN L A + +
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 225 FLLT-STSEVYGDPLEHPQK---ETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274
F+LT ST E W N + + Y
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLWVYA 177
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 6e-14
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 24/183 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+IV+ G +GFVGS L+++ ++RG EV + + + N ++ + DV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV----VRHPEKI--KIENEHLKVKKADVSSLD 59
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
V + D + P N + L ++ K+ G FL+ +
Sbjct: 60 EVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113
Query: 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
++ N K E + ++
Sbjct: 114 GSLFIAPGLRLMDSGEVPENI------LPGVKALGEFYLNFLMKEKEIDWVFFSPAADMR 167
Query: 292 PRM 294
P +
Sbjct: 168 PGV 170
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 2e-13
Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 17/185 (9%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---- 176
+ G G +G+ L + L + R+ + ++ D+ +P
Sbjct: 6 IVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR-TRPAWHEDNPINYVQCDISDPDDSQ 64
Query: 177 -ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK---FLLTSTSE 232
L + + H+ + + N N+L L + +
Sbjct: 65 AKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRK 122
Query: 233 VYGDPLEHPQKETYWGNVNPIGE---RSCYDEGKRTAET-LTMDYHRGAGVEVRIARIFN 288
Y P E K + P E R Y E + + + G+ + R N
Sbjct: 123 HYMGPFESYGKIE--SHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPGN 180
Query: 289 TYGPR 293
+G
Sbjct: 181 IFGFS 185
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP---RFELIRHD 172
V GG GFV S LV L+ +G V V D + + H ++ R D
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLKIFRAD 67
Query: 173 VVEP-----ILLEVDQIYHLACPASPVHYKY-NPVK-TIKTNVMGTLNMLGLAKRVGA-- 223
+ + + D ++H+ A+PVH+ +P IK + G +N++ R +
Sbjct: 68 LTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVK 124
Query: 224 KFLLT-STSEVYGDPLEHPQK---ETYWGNVNPIGERSC----YDEGKRTAETLTMDYHR 275
+ +LT S + V + L+ E W ++ + Y K AE +
Sbjct: 125 RVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAE 184
Query: 276 GAGVEV 281
+++
Sbjct: 185 ENNIDL 190
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 47/200 (23%), Positives = 70/200 (35%), Gaps = 36/200 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI-------DNFFT--GRKDNLVHHFRNPRFEL 168
R+ VTG GF G L L G V + F D + +
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD----- 65
Query: 169 IRH-DVVEPILLEV--DQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA 223
IR + + + E + ++H+A A P V Y PV+T TNVMGT+ +L + VG
Sbjct: 66 IRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 224 K--FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY-------- 273
+ ++ + Y + +G Y K AE +T Y
Sbjct: 124 VKAVVNITSDKCYDNKEWIWGYREN----EAMGGYDPYSNSKGCAELVTSSYRNSFFNPA 179
Query: 274 -HRGAGVEVRIARIFNTYGP 292
+ G V R N G
Sbjct: 180 NYGQHGTAVATVRAGNVIGG 199
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-12
Identities = 42/206 (20%), Positives = 68/206 (33%), Gaps = 41/206 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI-----------------DNFFTGRKDNLVH- 159
+++TG GF+G +LV +L+ R D + F +G + L H
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHF 134
Query: 160 -HFRNPRFELIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTN 207
R E++ D EP + VD I A+ V+ + + N
Sbjct: 135 KELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDS---AAMVNA-FPYHELFGPN 190
Query: 208 VMGTLNMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC------YD 260
V GT ++ +A K F ST++V E V Y
Sbjct: 191 VAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYG 250
Query: 261 EGKRTAETLTMDYHRGAGVEVRIARI 286
K E L + + + V + R
Sbjct: 251 TSKWAGEVLLREANDLCALPVAVFRC 276
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 1e-11
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I + G G GS ++++ +RG EV I RN H + +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIV--------------RNAGKITQTHKDINIL 47
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
++ + L+ V + +V +++ + + LL
Sbjct: 48 QKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
E + E Y + A+ L A + P
Sbjct: 108 QIDEDGNTLLESK---GLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEP 161
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-11
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 28/186 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD----NLVHHFRN-----PRFEL 168
R+ VTGG GF+GS ++ L++ G V T R D V N +
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNT-----TIRADPERKRDVSFLTNLPGASEKLHF 57
Query: 169 IRHDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223
D+ P I+H A P K V G L +L
Sbjct: 58 FNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 224 --KFLLTST--SEVYGDPLEHPQKETYWGNVNPIGER----SCYDEGKRTAETLTMDYHR 275
+F+ TS+ + + + E+ W +V+ + Y K AE +++
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176
Query: 276 GAGVEV 281
G++V
Sbjct: 177 QNGIDV 182
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 23/151 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP----RFELIRH 171
+ VTG +GF+GS LV +L++RG V V D + H P L +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRD---PTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 172 DVVEP-----ILLEVDQIYHLACPASPVHYKY-NPVK-TIKTNVMGTLNMLGLAKRVGA- 223
D+ + + ++H+ A+P+ ++ +P IK + G L ++
Sbjct: 64 DLADEGSFDEAIKGCTGVFHV---ATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 224 -KFLLT-STSEVYGDPLE-HPQKETYWGNVN 251
+ + T S V + E+ W ++
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
VTG G G++L L+++G V + + R + D+ +
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGDMADA 75
Query: 177 -----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKF 225
+++ ++Y+LA A S V + PV T + +G ++L ++ +F
Sbjct: 76 CSVQRAVIKAQPQEVYNLA--AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 133
Query: 226 LLTSTSEVYGDPLEHPQKET 245
STSE++G Q E
Sbjct: 134 YQASTSEMFGLIQAERQDEN 153
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-10
Identities = 55/176 (31%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 92 SFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID---- 147
S H S G + G R ++TG G GS+L + L+++G EV I
Sbjct: 3 SSHHHHHHSSGREN---KYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 59
Query: 148 NFFTGRKDNL---VHHFRNPRFELIRHDVVEP-----ILLEV--DQIYHLACPA-SPVHY 196
+F TGR ++L +L D+ + I+ EV +IY+L A S V
Sbjct: 60 SFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG--AQSHVKI 117
Query: 197 KY-NPVKTIKTNVMGTLNML------GLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245
+ T + +GTL +L GL V KF STSE+YG E PQKET
Sbjct: 118 SFDLAEYTADVDGVGTLRLLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKET 171
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 25/146 (17%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVH--HFRNPRFELIRHDVV 174
+TG G GS+L + L+++G EV I +F T R D++ H NP+F L D+
Sbjct: 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLS 65
Query: 175 EP-----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNML------GLAK 219
+ IL EV D++Y+L A S V + +P T + MGTL +L GL K
Sbjct: 66 DTSNLTRILREVQPDEVYNLG--AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKET 245
+ +F STSE+YG E PQKET
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET 147
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+TG G G++L L+++G EV D F + R ++I D++E
Sbjct: 8 ITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK---ELGIENDVKIIHMDLLEF 64
Query: 177 -----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKF 225
+ +V D++Y+LA A S V + P+ T + + +G L +L + V KF
Sbjct: 65 SNIIRTIEKVQPDEVYNLA--AQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKF 122
Query: 226 LLTSTSEVYGDPLEHPQKET 245
STSE++G E PQ E
Sbjct: 123 YQASTSEMFGKVQEIPQTEK 142
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R++V G G V +L+ +L ++G E + ++ +++ ++ E
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVA----MVRNEEQGPELRERGASDIVVANLEEDF 78
Query: 178 ---LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
+D + A + P KTI ++ G + + A++ G K F++ S+
Sbjct: 79 SHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134
Query: 234 YGDPLEHP 241
DP + P
Sbjct: 135 -VDPDQGP 141
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGR----KDNLVHHFRNPRFELIRH 171
I++TGG G G V K++D + ++IV R + + F +PR
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYS-----RDELKQSEMAMEFNDPRMRFFIG 77
Query: 172 DV-----VEPILLEVDQIYHLAC----PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
DV + L VD H A P + +YNP++ IKTN+MG N++ +
Sbjct: 78 DVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINACLKNA 133
Query: 223 -AKFLLTST 230
++ + ST
Sbjct: 134 ISQVIALST 142
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 16/129 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VV 174
+I V G G GS +V + RG EV+ + R + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAV-----VRDPQKAADRLGATVATLVKEPLVLT 56
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
E L VD + Y ++ +++ L + + ++ +
Sbjct: 57 EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109
Query: 234 YGDPLEHPQ 242
+HP
Sbjct: 110 AMPGADHPM 118
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 97 RTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTG 152
R+ S + + R ++TG G GS+L + L+ +G EV + NF T
Sbjct: 9 RSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQ 68
Query: 153 RKDNL---VHHFRNPRFELIRHDVVEP-----ILLEV--DQIYHLACPA-SPVHYKY-NP 200
R +++ H+ +L D+ + + + D++Y+LA A S V + P
Sbjct: 69 RINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA--AQSHVAVSFEIP 126
Query: 201 VKTIKTNVMGTLNML------GLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245
T G L +L + K+ +SE++G PQ ET
Sbjct: 127 DYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET 176
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+I + G G G + + + G EV V+ R + + ++ DV
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
V+ + D + L N + G N++ K G + +++
Sbjct: 60 DVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
Query: 232 EVYGDPLEHP 241
+ DP + P
Sbjct: 113 FLLWDPTKVP 122
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 74 PPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLV 133
P L A Q + +F R L + +TG G VG L
Sbjct: 114 PASTLTGMFAYRQTQLIEDLKFLS---------RTSTLFDGSPLTVAITGSRGLVGRALT 164
Query: 134 DKLIDRGDEVIVI 146
+L G EVI +
Sbjct: 165 AQLQTGGHEVIQL 177
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI----RHDV 173
+I + G G VG L+ L ++ RK V + N + +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQYNNVKAVHFDVDWTPEE 56
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
+ L +D I +++ +K ++ G + ++ A++ K F+L ST
Sbjct: 57 MAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 34/202 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEP 176
+I++ G G +G L +L +G EV R + + ++ R D +
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTG-----LRRSAQPMPAGVQTLIADVTRPDTLAS 58
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYG 235
I+ +I AS +Y+ + V G N L + + S++ VYG
Sbjct: 59 IVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG 114
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP--- 292
+E E + AE L A I R YGP
Sbjct: 115 QEVEEWLDEDTP--PIAKDFSG---KRMLEAEAL------LAAYSSTILRFSGIYGPGRL 163
Query: 293 --------RMCLDDGRVVSNFV 306
+N +
Sbjct: 164 RMIRQAQTPEQWPARNAWTNRI 185
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 39/140 (27%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF--------ELI 169
++VTG +G G + KL + D+ + LV R+ + ++
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKG---------LV---RSAQGKEKIGGEADVF 53
Query: 170 RHDVVEPILLE-----VDQIYHLA-------------CPASPVHYKYNPVKTIKTNVMGT 211
D+ + + +D + L P + + + +G
Sbjct: 54 IGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 113
Query: 212 LNMLGLAKRVGAK-FLLTST 230
N + AK G K ++ +
Sbjct: 114 KNQIDAAKVAGVKHIVVVGS 133
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
+ + G +G G L+ +++++G +V +I GR+ D
Sbjct: 20 SVFILGASGETGRVLLKEILEQGLFSKVTLI-----GRRKLTFDEEAYKNVNQEVVDFEK 74
Query: 174 ---VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
D + K ++ + L LAK G K F L S
Sbjct: 75 LDDYASAFQGHDVGFCCLG---TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLS 131
Query: 230 T 230
+
Sbjct: 132 S 132
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 7e-05
Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 124 GAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
G G+ L L +G +I T R + + R E + EP L V
Sbjct: 12 GHGYTARVLSRALAPQGWRIIG-----TSRNPDQMEAIRASGAEPLLWPGEEPSLDGVT- 65
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTSEVYGDPLEHPQ 242
HL +P V+ L A+ +++ ST+ VYGD
Sbjct: 66 --HLLISTAPDSGGD--------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWV 115
Query: 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
ET + P R G+ + + + + R+ YGP
Sbjct: 116 DETTP--LTPTAAR-----GRWRVMAEQQ-WQAVPNLPLHVFRLAGIYGP 157
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 23/96 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
I V G AG +G + L + V V D + + D +
Sbjct: 7 NICVVG-AGKIGQMIAALLKTSSNYSVTVAD-----HDLAALAVLNRMGVATKQVDAKDE 60
Query: 177 -----ILLEVD-----QIYHL------ACPASPVHY 196
L D + L A A+ HY
Sbjct: 61 AGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 35/175 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVE 175
I + G AG + L L+ D I + + + + + R +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL---YGRQLKTRIPPEIIDHERVTVIEGSFQN 63
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
P LE + ++ + +++ R + ++ +
Sbjct: 64 PGXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
G E P W N Y +G+R A + R + + I R
Sbjct: 108 M--AGLSGEFPVALEKWTFDNLPIS---YVQGERQAR----NVLRESNLNYTILR 153
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
R+++ G G G HL+D+++ +VI RK H PR + + E
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTLAKVIAP-----ARKALAEH----PRLDNPVGPLAE 57
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 5e-04
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG----RKDNLVHHFRNPRFELIRHDV 173
RI++ G G++G H+ +D G ++ T K L+ F+ ++ +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 174 VEP 176
+
Sbjct: 66 DDH 68
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 42/221 (19%)
Query: 99 SSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL 157
+GR + +++ G G + H++++L D+ + + R+
Sbjct: 6 HHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLF-----ARQPAK 60
Query: 158 VHHFRNPRFELIRHDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTL 212
+H ++I DV+ L+ D +Y T + +
Sbjct: 61 IHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLDIQAN 106
Query: 213 NMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271
+++ K K + + +Y E P K W N + R A
Sbjct: 107 SVIAAMKACDVKRLIFVLSLGIYD---EVPGKFVEWNNAVIGE----PLKPFRRAA---- 155
Query: 272 DYHRGAGVE---VRIARIFN--TYGPRMCLDDGRVVSNFVA 307
D +G+E +R A + + + + V+
Sbjct: 156 DAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVS 196
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.97 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.97 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.97 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.96 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.96 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.96 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.96 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.96 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.96 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.96 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.96 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.96 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.96 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.96 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.96 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.96 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.96 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.95 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.95 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.95 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.95 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.95 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.95 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.95 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.95 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.95 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.95 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.95 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.95 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.94 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.94 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.94 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.94 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.94 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.94 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.94 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.94 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.94 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.94 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.94 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.94 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.94 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.94 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.94 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.93 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.93 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.93 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.93 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.93 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.93 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.93 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.93 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.93 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.92 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.91 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.91 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.91 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.91 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.91 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.91 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.9 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.9 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.89 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.89 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.89 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.89 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.89 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.89 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.89 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.89 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.89 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.88 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.88 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.88 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.88 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.88 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.88 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.88 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.88 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.88 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.88 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.88 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.87 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.87 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.87 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.87 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.87 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.87 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.87 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.87 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.87 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.87 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.87 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.87 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.87 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.87 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.87 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.87 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.87 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.87 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.87 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.87 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.87 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.87 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.87 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.87 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.87 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.87 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.87 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.87 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.86 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.86 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.86 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.86 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.86 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.86 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.86 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.86 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.86 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.86 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.86 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.86 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.86 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.86 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.86 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.86 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.86 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.86 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.86 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.86 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.86 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.86 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.86 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.86 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.86 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.86 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.86 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.86 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.86 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.86 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.86 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.86 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.86 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.86 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.86 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.86 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.86 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.86 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.86 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.86 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.86 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.86 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.86 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.86 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.86 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.86 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.86 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.86 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.86 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.85 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.85 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.85 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.85 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.85 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.85 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.85 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.85 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.85 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.85 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.85 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.85 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.85 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.85 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.85 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.85 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.85 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.85 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.85 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.85 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.85 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.85 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.85 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.85 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.85 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.85 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.85 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.85 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.85 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.85 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.85 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.85 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.85 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.85 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.85 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.85 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.85 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.85 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.85 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.85 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.85 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.85 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.85 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.85 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.85 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.84 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.84 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.84 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.84 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.84 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.84 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.84 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.84 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.84 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.84 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.84 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.84 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.84 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.84 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.84 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.84 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.84 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.84 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.84 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.84 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.84 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.84 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.84 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.84 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.84 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.84 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.84 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.83 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.83 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.83 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.83 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.83 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.83 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.83 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.83 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.83 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.83 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.83 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.82 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.82 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.82 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.82 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.82 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.82 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.82 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.82 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.82 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.82 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.82 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.82 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.81 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.81 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.81 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.81 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.81 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.81 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.8 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.8 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.8 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.8 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.79 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.78 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.77 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.77 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.77 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.76 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.76 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.73 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.72 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.7 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.7 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.69 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.69 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.69 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.69 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.68 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.67 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.67 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.66 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.65 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.65 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.62 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.6 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.59 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.58 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.54 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.52 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.51 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.48 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.47 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.22 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.18 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.1 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.91 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.88 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.86 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.85 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.67 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.5 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.48 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.48 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.39 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.34 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.24 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.18 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.09 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.06 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.04 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.04 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.01 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.96 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.86 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.8 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.78 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.74 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.74 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.73 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.72 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.71 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.7 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.7 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.66 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.65 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.64 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.62 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.59 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.59 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.57 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.56 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.54 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.53 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.51 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.5 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.49 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.49 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.45 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.4 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.38 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.37 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.36 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.34 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.33 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.31 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.28 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.26 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.23 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.22 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.18 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 97.18 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.18 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.17 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.17 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.17 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.16 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.12 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.11 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 97.09 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.09 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.07 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.06 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.06 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.04 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.02 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.02 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.01 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.99 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.98 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.98 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.97 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.97 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.96 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.96 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.95 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.95 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.95 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.95 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.88 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.87 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.85 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.84 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.82 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.81 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.81 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.8 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.79 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.77 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.66 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.64 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.61 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.58 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.58 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.56 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.55 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.55 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.54 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.52 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.48 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.47 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.46 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.44 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.44 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.42 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.39 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.36 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.36 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.35 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.32 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.31 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.28 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.24 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.19 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.15 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.14 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.13 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.08 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.08 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.96 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.94 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.91 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.9 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.89 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 95.88 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.87 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.86 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 95.85 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.84 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.82 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.81 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.8 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.79 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.76 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.69 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.63 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.58 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.58 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.57 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.56 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.55 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.54 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 95.51 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.49 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.43 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.42 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.4 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.39 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.39 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.36 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.34 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.33 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.22 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.21 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.21 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.2 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.19 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.18 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.18 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.18 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.13 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.09 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.09 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.06 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.05 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.02 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.02 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.99 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.98 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 94.97 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.89 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 94.87 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.86 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.86 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.84 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.81 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 94.8 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 94.7 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 94.69 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=240.85 Aligned_cols=195 Identities=70% Similarity=1.167 Sum_probs=162.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
.++|+||||||+||||++|+++|+++|++|++++|.................++++.+|+.++.+.++|+|||||+....
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~~ 104 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 104 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSH
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccCc
Confidence 46789999999999999999999999999999998654333333322334678999999999999999999999986543
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY 273 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (309)
.....++...+++|+.|+.+++++|++.++++|++||..+|+.....+.+|+.|...++..+.+.|+.+|+++|.+++.+
T Consensus 105 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~ 184 (343)
T 2b69_A 105 PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAY 184 (343)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 33445778889999999999999999988899999999999987777888987766667777889999999999999999
Q ss_pred HHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 274 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 274 a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
+.+.+++++++||++||||+.....+.+++.|+.+
T Consensus 185 ~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~ 219 (343)
T 2b69_A 185 MKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQ 219 (343)
T ss_dssp HHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHH
T ss_pred HHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHH
Confidence 88889999999999999998754446677776653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=237.87 Aligned_cols=190 Identities=32% Similarity=0.409 Sum_probs=157.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC------CceEEEecccccc-----ccCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN------PRFELIRHDVVEP-----ILLEVD 182 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~-----~~~~~D 182 (309)
.++|+||||||+||||++|+++|+++|++|++++|............... ..++++.+|+.+. ++.++|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 46789999999999999999999999999999998765443322211111 5788999999776 567899
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
+|||+||.........++...+++|+.|+.+++++|++.++ +|||+||..+|+.....+++|+ .+..|.+.|+.
T Consensus 103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~ 177 (351)
T 3ruf_A 103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSPYAV 177 (351)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHH
T ss_pred EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCCChhHH
Confidence 99999986544444457788899999999999999999987 8999999999998888888888 56778899999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHHh
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQ 308 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~~ 308 (309)
+|.++|.+++.++.+.|++++++||++||||+..... ..+++.|+++
T Consensus 178 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 226 (351)
T 3ruf_A 178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAA 226 (351)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHH
Confidence 9999999999999888999999999999999864331 2567777654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=233.11 Aligned_cols=190 Identities=26% Similarity=0.436 Sum_probs=148.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCC-cccccccccCCCceEEEecccccc-----ccCC--C
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLE--V 181 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~ 181 (309)
+..++|+||||||+||||++|+++|+++| ++|+++++.... ....+........++++.+|+.++ ++.+ +
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 99 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV 99 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence 34577899999999999999999999999 678888775422 223333333446899999999876 3444 9
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCC-CCCCCCCCCCCCCCCCCCCCHH
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
|+|||+||.........++...+++|+.|+.+++++|++.++ +||++||..+|+.. ...+++|+ .+..|.+.|
T Consensus 100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y 174 (346)
T 4egb_A 100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPY 174 (346)
T ss_dssp CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHH
T ss_pred CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChh
Confidence 999999987655445567788999999999999999999987 79999999999986 45678887 677888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
+.+|+++|.+++.++.+++++++++||++||||+. ....+++.++++
T Consensus 175 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~--~~~~~~~~~~~~ 221 (346)
T 4egb_A 175 SSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ--YPEKLIPLMVTN 221 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC--CTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC--CccchHHHHHHH
Confidence 99999999999999988899999999999999987 334677776653
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=223.47 Aligned_cols=177 Identities=37% Similarity=0.601 Sum_probs=149.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc----cCCCCEEEEcccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----LLEVDQIYHLACPAS 192 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~----~~~~D~Vih~A~~~~ 192 (309)
|+||||||+||||++|+++|+++|++|++++|......... ...++++.+|+.+.. +.+ |+|||||+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~~ 74 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKG-DVVFHFAANPE 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCC-SEEEECCSSCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCC-CEEEECCCCCC
Confidence 68999999999999999999999999999998655433222 356778888887763 334 99999998655
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (309)
......++...+++|+.|+.+++++|++.++ +||++||..+|+.....+.+|+ .+..|.+.|+.+|.++|.+++
T Consensus 75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK~~~e~~~~ 149 (312)
T 3ko8_A 75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCA 149 (312)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHH
Confidence 4555667889999999999999999999887 8999999999998888888888 677788999999999999999
Q ss_pred HHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 272 DYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 272 ~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.++.+.+++++++||++||||+.. ..++..+++
T Consensus 150 ~~~~~~g~~~~~lrp~~v~g~~~~---~~~~~~~~~ 182 (312)
T 3ko8_A 150 TYARLFGVRCLAVRYANVVGPRLR---HGVIYDFIM 182 (312)
T ss_dssp HHHHHHCCEEEEEEECEEECTTCC---SSHHHHHHH
T ss_pred HHHHHhCCCEEEEeeccccCcCCC---CChHHHHHH
Confidence 999889999999999999999853 345555554
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=223.42 Aligned_cols=173 Identities=24% Similarity=0.351 Sum_probs=145.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+|+||||||+||||++|+++|+++|++|++++|. ..... + ..++++.+|+. . .+.++|+|||+|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~-~------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-IGNKA-I------NDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-CC------------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC-CCccc-C------CceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 5799999999999999999999999999999987 22211 1 16778888886 4 56789999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.... ++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..|.+.|+.+|.++|++
T Consensus 73 ~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 143 (311)
T 3m2p_A 73 RGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMYGVSKLACEHI 143 (311)
T ss_dssp CCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred CCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchhHHHHHHHHHH
Confidence 5433 6677889999999999999999987 7999999999998888888888 5777889999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
++.++.+.+++++++||++||||+... ..+++.|+++
T Consensus 144 ~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~ 180 (311)
T 3m2p_A 144 GNIYSRKKGLCIKNLRFAHLYGFNEKN--NYMINRFFRQ 180 (311)
T ss_dssp HHHHHHHSCCEEEEEEECEEECSCC----CCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeCceeCcCCCC--CCHHHHHHHH
Confidence 999998899999999999999998632 3677777654
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=221.50 Aligned_cols=178 Identities=33% Similarity=0.511 Sum_probs=145.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc----ccCCCCEEEEcccCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP----ILLEVDQIYHLACPA 191 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~----~~~~~D~Vih~A~~~ 191 (309)
||+||||||+||||++|+++|+++| .++++++......+.. ...++++.+|+.+. .+.++|+|||+|+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 4689999999999999999999999 6666655433222211 34678888888764 456899999999865
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
.......++...+++|+.|+.+++++|++.+. ++|++||..+|+.....+.+|+ .+..+.+.|+.+|.++|.++
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~~~ 149 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASKLACEALI 149 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 44445668899999999999999999999887 8999999999998888888887 57778899999999999999
Q ss_pred HHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 271 MDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+.++.+++++++++||++||||++. ..+++.++.
T Consensus 150 ~~~~~~~g~~~~ilRp~~v~G~~~~---~~~~~~~~~ 183 (313)
T 3ehe_A 150 ESYCHTFDMQAWIYRFANVIGRRST---HGVIYDFIM 183 (313)
T ss_dssp HHHHHHTTCEEEEEECSCEESTTCC---CSHHHHHHH
T ss_pred HHHHHhcCCCEEEEeeccccCcCCC---cChHHHHHH
Confidence 9999999999999999999999863 356666654
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=227.03 Aligned_cols=182 Identities=34% Similarity=0.520 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC---CcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT---GRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~---~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++|+|||||||||||++|+++|+++|++|++++|... .....+........++++.+|+. ++|+|||+|+.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~ 79 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH 79 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCcc
Confidence 35789999999999999999999999999999998765 22222322223345556666665 78999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
........++...++ |+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..|.+.|+.+|+++|.+
T Consensus 80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 153 (321)
T 3vps_A 80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMV 153 (321)
T ss_dssp CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHH
T ss_pred CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHH
Confidence 554334455666777 99999999999999996 9999999999998888888888 6777889999999999999
Q ss_pred HHHHHHhcCC-cEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 270 TMDYHRGAGV-EVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 270 v~~~a~~~gi-~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
++.++.++++ +++++||+++|||+.. ...+++.++++
T Consensus 154 ~~~~~~~~~~~~~~ilRp~~v~G~~~~--~~~~~~~~~~~ 191 (321)
T 3vps_A 154 AGAHQRASVAPEVGIVRFFNVYGPGER--PDALVPRLCAN 191 (321)
T ss_dssp HHHHHHSSSSCEEEEEEECEEECTTCC--TTSHHHHHHHH
T ss_pred HHHHHHHcCCCceEEEEeccccCcCCC--CCChHHHHHHH
Confidence 9999988899 9999999999999863 35667776653
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=225.73 Aligned_cols=184 Identities=28% Similarity=0.415 Sum_probs=147.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCc-ccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
+|+||||||+||||++|+++|+++ |++|++++|..... .+.+. .+....++++.+|+.++ ++.++|+||||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTG-GGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHh-hhccCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 579999999999999999999999 88999999864321 12221 12235788999999875 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCC------------CCCCCCCCCCCCCCCC
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE------------HPQKETYWGNVNPIGE 255 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~------------~~~~E~~~~~~~~~~~ 255 (309)
||.........++...+++|+.|+.+++++|.+.+++||++||..+|+.... .+++|+ .+..+
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~~ 157 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYNP 157 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCCC
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCCC
Confidence 9864322223467788999999999999999998889999999999986532 466666 56677
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+.|+.+|+++|.+++.++.+++++++++||++||||+.. ...+++.+++
T Consensus 158 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~--~~~~~~~~~~ 207 (348)
T 1oc2_A 158 SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQH--IEKFIPRQIT 207 (348)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCC--TTSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCC--ccchHHHHHH
Confidence 8899999999999999998888999999999999999863 2456665554
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=224.15 Aligned_cols=185 Identities=29% Similarity=0.496 Sum_probs=148.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCC-cccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
+|+||||||+||||++|+++|+++| ++|++++|.... ..+.+........++++.+|+.+. ++.++|+||||
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL 82 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence 5789999999999999999999997 899999986421 222222222245788899999875 44689999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
||.........++...+++|+.|+.+++++|.+.+. +||++||..+|+.....+++|+ .+..+.+.|+.+|.+
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~ 157 (336)
T 2hun_A 83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAA 157 (336)
T ss_dssp CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHHHHHHHH
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCccHHHHHH
Confidence 986432222346778899999999999999998763 8999999999998766677887 566677899999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+|.+++.++.+++++++++||++||||+.. ...+++.+++
T Consensus 158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~--~~~~~~~~~~ 197 (336)
T 2hun_A 158 SDMLVLGWTRTYNLNASITRCTNNYGPYQF--PEKLIPKTII 197 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECEEESTTCC--TTSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeeeeeeCcCCC--cCchHHHHHH
Confidence 999999999888999999999999999862 3456666554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=231.08 Aligned_cols=190 Identities=24% Similarity=0.388 Sum_probs=152.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccc-cc-----ccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EP-----ILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-~~-----~~~~~D~Vih 186 (309)
+++|+||||||+||||++|+++|+++ |++|++++|....... ......++++.+|+. +. ++.++|+|||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD----LVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG----GGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh----hccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 46789999999999999999999998 8999999986543322 223468899999998 54 4567999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC-CCCC-CCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNPI-GERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~-~~~~-~~~~~Y~~sK~ 264 (309)
+||.........++...+++|+.++.+++++|++.+.+|||+||..+|+.....++.|+.+.. ..+. .|.+.|+.+|+
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~ 177 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQ 177 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHHH
Confidence 998755444455778889999999999999999988899999999999988777888774321 1111 46679999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC------CCCcHHHHHHHh
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCL------DDGRVVSNFVAQ 308 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~------~~~~~i~~~i~~ 308 (309)
++|.+++.++.+ +++++++||++||||+... ....+++.|+++
T Consensus 178 ~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
T 3slg_A 178 LMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 226 (372)
T ss_dssp HHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHH
Confidence 999999999877 9999999999999998642 235677777654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=222.12 Aligned_cols=179 Identities=30% Similarity=0.416 Sum_probs=145.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--CCEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIY 185 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vi 185 (309)
+.+.|+||||||+||||++|+++|+++|++|++++|.... .. + .+.++.+|+.++ ++.+ +|+||
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 79 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-----P---NVEMISLDIMDSQRVKKVISDIKPDYIF 79 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-----T---TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-----c---eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 3466899999999999999999999999999999986543 11 1 678889999876 3343 89999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccccCC--CCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDP--LEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy~~~--~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
||||.........++...+++|+.|+.+++++|.+. +. +||++||..+|+.. ...+++|+ ++..+.+.|+.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y~~ 154 (321)
T 2pk3_A 80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGV 154 (321)
T ss_dssp ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHHHH
T ss_pred EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCccHH
Confidence 999865433334578889999999999999999876 34 89999999999876 66778887 56677899999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+|+++|.+++.++.++|++++++||++||||+.. ...+++.|++
T Consensus 155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~--~~~~~~~~~~ 198 (321)
T 2pk3_A 155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQS--LGFVTQDFAK 198 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCC--TTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCC--CCchHHHHHH
Confidence 9999999999998888999999999999999863 2345565554
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=221.77 Aligned_cols=184 Identities=34% Similarity=0.533 Sum_probs=148.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC---C---CeEEEEecCCCC-cccccccccCCCceEEEecccccc-----ccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR---G---DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~---g---~~V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~V 184 (309)
|+||||||+||||++|+++|+++ | ++|++++|.... ..+.+........++++.+|+.++ .+.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 58999999999999999999997 7 899999986432 122222221235788899999875 45789999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
|||||.........++...+++|+.|+.+++++|.+.++ +||++||..+|+.....+++|+ .+..+.+.|+.+|
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999986432222346778899999999999999999887 9999999999997766677777 5667789999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+++|.+++.++.+++++++++||++||||+.. ...+++.+++
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~--~~~~~~~~~~ 197 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQH--PEKLIPLFVT 197 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCC--TTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCC--CCChHHHHHH
Confidence 99999999998888999999999999999863 3456666654
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=224.31 Aligned_cols=187 Identities=26% Similarity=0.387 Sum_probs=150.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHH--CCCeEEEEecCCCCc------cccc--ccccCCCceEEEecccccc-----
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLID--RGDEVIVIDNFFTGR------KDNL--VHHFRNPRFELIRHDVVEP----- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~--~g~~V~~i~r~~~~~------~~~~--~~~~~~~~v~~~~~Dl~~~----- 176 (309)
+.+++|+||||||+||||++|+++|++ .|++|++++|..... .+.. ........+.++.+|+.++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 346789999999999999999999999 899999999865411 0000 1112334678899999876
Q ss_pred c-cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 177 I-LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 177 ~-~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
+ ..++|+||||||.... ...++...+++|+.|+.+++++|++.+++||++||..+|+.... +.+|+ .+..|
T Consensus 86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred hhccCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence 3 5789999999985332 45678899999999999999999999889999999999998766 88888 57788
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHHh
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQ 308 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~~ 308 (309)
.+.|+.+|.++|.+++.++.+ ++++++||++||||+..... ..+++.++++
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~ 210 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALG 210 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHH
Confidence 899999999999999998765 99999999999999864321 2667776653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=226.61 Aligned_cols=189 Identities=28% Similarity=0.365 Sum_probs=151.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccC---CCceEEEecccccc-----ccCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFR---NPRFELIRHDVVEP-----ILLEVD 182 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~---~~~v~~~~~Dl~~~-----~~~~~D 182 (309)
.++|+||||||+||||++|+++|+++|++|++++|......+.+.. .+. ...++++.+|+.+. .+.++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 104 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 104 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999865432211111 111 24688899999775 467899
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
+||||||.........++...+++|+.++.+++++|++.++ +||++||..+|+.....+.+|+ .+..+.+.|+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-----~~~~~~~~Y~~ 179 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYAV 179 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHH
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCC-----CCCCCCChhHH
Confidence 99999986432223356788899999999999999999886 8999999999998777788888 55677889999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHH
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVA 307 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~ 307 (309)
+|+++|.+++.++.+.+++++++||++||||+.... ...+++.|++
T Consensus 180 sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 227 (352)
T 1sb8_A 180 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTS 227 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHH
Confidence 999999999999888899999999999999986432 1255666654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=226.75 Aligned_cols=163 Identities=28% Similarity=0.310 Sum_probs=135.0
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEE
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~V 184 (309)
.....++|+||||||+||||++|+++|+++|++|++++|.... ..+.++.+|+.+. .+.++|+|
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~v 81 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAV 81 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEE
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEE
Confidence 3455678899999999999999999999999999999986433 3466788888765 56789999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccC--CCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD--PLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~--~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
||+|+..... ...+...+++|+.|+.+++++|++.++ +||++||..+|+. ....+++|+ .+..+.+.|+.
T Consensus 82 ih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y~~ 154 (347)
T 4id9_A 82 LHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPYGL 154 (347)
T ss_dssp EECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHHHH
T ss_pred EECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChHHH
Confidence 9999864332 233478899999999999999999987 8999999999998 566678888 57778899999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCcee
Q 021681 262 GKRTAETLTMDYHRGAGVEVRIARIFNTY 290 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~gi~~~ivRp~~V~ 290 (309)
+|.++|.+++.++.+.+++++++||++||
T Consensus 155 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~ 183 (347)
T 4id9_A 155 TKLLGEELVRFHQRSGAMETVILRFSHTQ 183 (347)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEccceEe
Confidence 99999999999998899999999999999
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=219.42 Aligned_cols=181 Identities=34% Similarity=0.531 Sum_probs=144.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~ 189 (309)
|+||||||+||||++++++|+++|++|++++|......... ...++++.+|+.++ .+. ++|+|||+|+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 75 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAA 75 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS-----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc-----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence 58999999999999999999999999999987533222211 13466788898775 344 7999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc-ccccC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~-~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
.........++...+++|+.|+.+++++|++.+. ++|++||. .+|+. ....+.+|+ .+..+.+.|+.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~ 150 (311)
T 2p5y_A 76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPYAASKAAF 150 (311)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChHHHHHHHH
Confidence 5432223346788899999999999999999886 89999998 89986 455577777 4566778999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC-CcHHHHHHH
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD-GRVVSNFVA 307 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~-~~~i~~~i~ 307 (309)
|.+++.++.+++++++++||++||||++.... ..+++.+++
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~ 192 (311)
T 2p5y_A 151 EHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAE 192 (311)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHH
Confidence 99999998888999999999999999864332 456676665
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=218.73 Aligned_cols=169 Identities=27% Similarity=0.451 Sum_probs=141.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A 188 (309)
||+||||||+||||++|+++|+++|++|++++|......+.+ . ..++++.+|+.+. .+. ++|+|||+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a 75 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA 75 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 479999999999999999999999999999998654332221 1 2677888998775 345 799999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
|.........++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+ ++..+.+.|+.+|.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 150 (330)
T 2c20_A 76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTYGETKLAIE 150 (330)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHHHHHHHHHH
T ss_pred cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChHHHHHHHHH
Confidence 86432223346778899999999999999999886 8999999999998777788888 56677899999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+++.++.+++++++++||++||||+.
T Consensus 151 ~~~~~~~~~~~~~~~ilrp~~v~G~~~ 177 (330)
T 2c20_A 151 KMLHWYSQASNLRYKIFRYFNVAGATP 177 (330)
T ss_dssp HHHHHHHHTSSCEEEEEECSEEECCCT
T ss_pred HHHHHHHHHhCCcEEEEecCcccCCCC
Confidence 999999888899999999999999963
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=220.39 Aligned_cols=175 Identities=25% Similarity=0.414 Sum_probs=145.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----ccC--CCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----ILL--EVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-----~~~--~~D~Vi 185 (309)
++|+||||||+||||++++++|+++|++|++++|............ .....+.++.+|+.++ .+. ++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999999999998765443222111 1134678889999876 334 799999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
||||.........++...+++|+.++.+++++|++.+. +||++||..+|+.....+++|+ .+..+.+.|+.+|.
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y~~sK~ 158 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPYGQTKL 158 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHHHHHHH
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChhHHHHH
Confidence 99986544334456778899999999999999999886 8999999999998888888888 56778899999999
Q ss_pred HHHHHHHHHHHhcC-CcEEEEEeCceeCCCC
Q 021681 265 TAETLTMDYHRGAG-VEVRIARIFNTYGPRM 294 (309)
Q Consensus 265 ~~E~~v~~~a~~~g-i~~~ivRp~~V~Gp~~ 294 (309)
++|.+++.++.+.+ ++++++||++||||+.
T Consensus 159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~ 189 (341)
T 3enk_A 159 MAEQILRDVEAADPSWRVATLRYFNPVGAHE 189 (341)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence 99999999988875 9999999999999964
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=221.93 Aligned_cols=188 Identities=25% Similarity=0.358 Sum_probs=148.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
..++|+||||||+||||++|+++|+++|++|++++|........ ....++++.+|+.+. .+.++|+|||+
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNL 100 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence 34678999999999999999999999999999999865432211 123577888998775 46789999999
Q ss_pred ccCCCCCCC-cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCC-----CCCCCCCCCCCCCCCCCCHHH
Q 021681 188 ACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE-----HPQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 188 A~~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~-----~~~~E~~~~~~~~~~~~~~Y~ 260 (309)
|+......+ ..++...+++|+.|+.+++++|++.++ +||++||..+|+.... .+++|+.+ .+..+.+.|+
T Consensus 101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~---~~~~~~~~Y~ 177 (379)
T 2c5a_A 101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFG 177 (379)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG---SSBCCSSHHH
T ss_pred ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccC---CCCCCCChhH
Confidence 986433222 467888999999999999999999887 8999999999986432 34566532 1455678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCC--cHHHHHHHh
Q 021681 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDG--RVVSNFVAQ 308 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~--~~i~~~i~~ 308 (309)
.+|+++|.+++.++.+++++++++||++||||+.....+ .+++.|+++
T Consensus 178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~ 227 (379)
T 2c5a_A 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK 227 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHH
Confidence 999999999999988889999999999999998643322 266666543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=224.67 Aligned_cols=176 Identities=26% Similarity=0.368 Sum_probs=135.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
.++|+||||||+||||++|+++|+++| ++|++++|......+.+. ....++++.+|+.++ ++.++|+|||+
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~ 106 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHL 106 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEEC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEEC
Confidence 567899999999999999999999999 999999986543322221 245788899998875 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccccCCCCCCCC--CCCCCCCCCC-CCCCHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDPLEHPQK--ETYWGNVNPI-GERSCYDEG 262 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy~~~~~~~~~--E~~~~~~~~~-~~~~~Y~~s 262 (309)
|+.........++...+++|+.++.+++++|++. ++ +||++||..+|+.....+++ |+.|. .+. .+.+.|+.+
T Consensus 107 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~s 184 (377)
T 2q1s_A 107 ATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSMS 184 (377)
T ss_dssp CCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHHH
T ss_pred CCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHHH
Confidence 9864332223467888999999999999999998 76 89999999999987666777 77432 144 667899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|+++|.+++.++.+.+++++++||++||||+.
T Consensus 185 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE 216 (377)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence 99999999999888899999999999999976
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=220.57 Aligned_cols=189 Identities=23% Similarity=0.248 Sum_probs=147.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--CCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih 186 (309)
+++|+||||||+||||++|+++|+++|++|++++|.................+.++.+|+.++ .+.+ +|+|||
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 356899999999999999999999999999999986544322111111134678899999875 3343 899999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCC-CCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLE-HPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
|||.........++...+++|+.|+.+++++|.+.+ + +||++||..+|+.... .+..|+ .+..+.+.|+.+|
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~sK 161 (357)
T 1rkx_A 87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSK 161 (357)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHH
T ss_pred CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHHH
Confidence 998532222334677889999999999999999886 4 8999999999987543 356666 4566778999999
Q ss_pred HHHHHHHHHHHHhc---------CCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 264 RTAETLTMDYHRGA---------GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 264 ~~~E~~v~~~a~~~---------gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
.++|.+++.++.++ +++++++||++||||+... ...+++.|+++
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~-~~~~~~~~~~~ 214 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRA 214 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc-cccHHHHHHHH
Confidence 99999999988764 9999999999999997632 24677777653
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=220.36 Aligned_cols=192 Identities=28% Similarity=0.413 Sum_probs=143.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc-ccccccCCCceEEEecccccc-----ccCC--CCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-NLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~-~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih~ 187 (309)
||+||||||+||||++|+++|+++|++|++++|..+.... .........+++++.+|+.++ .+.+ +|+||||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 4789999999999999999999999999999985432211 111111224578889999775 3455 9999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCCC-----------CCCCCCCC
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETY-----------WGNVNPIG 254 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~~-----------~~~~~~~~ 254 (309)
||.........++...+++|+.|+.+++++|++.++ +||++||..+|+.....+..|+. .....+..
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~ 160 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 160 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence 986432222346788899999999999999999875 79999999999875544322211 01114556
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCC-CCcHHHHHHH
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD-DGRVVSNFVA 307 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~-~~~~i~~~i~ 307 (309)
+.+.|+.+|+++|.+++.++.++|++++++||++||||+.... ...+++.+++
T Consensus 161 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~ 214 (347)
T 1orr_A 161 FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQ 214 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHH
Confidence 7789999999999999999888899999999999999976322 2345666554
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=217.58 Aligned_cols=187 Identities=23% Similarity=0.425 Sum_probs=146.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
|+||||||+||||++++++|+++ |++|++++|...... .......++++.+|+.+. .+.++|+||||||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH----HhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 58999999999999999999998 899999998643322 122345788999999863 3457999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCC-CCC-CCCCHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNV-NPI-GERSCYDEGKRTAE 267 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~-~~~-~~~~~Y~~sK~~~E 267 (309)
...+.....++...+++|+.++.+++++|++.+.+||++||..+|+.....+++|+.+... .+. .+.+.|+.+|.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e 156 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence 6443333446778899999999999999998888999999999999877677778754211 111 34568999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCCCC------CCCcHHHHHHH
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCL------DDGRVVSNFVA 307 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~------~~~~~i~~~i~ 307 (309)
.+++.++.+.+++++++||++||||+... ....+++.++.
T Consensus 157 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 202 (345)
T 2bll_A 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLIL 202 (345)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHH
Confidence 99999988889999999999999998632 11345666654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=217.57 Aligned_cols=176 Identities=22% Similarity=0.251 Sum_probs=142.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc-cccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~-~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
.+|+||||||+||||++|+++|+++|++|++++|........ +........++++.+|+.+. .+. ++|+|||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 467999999999999999999999999999999865432111 11111234688889999875 333 4799999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC--CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
|||.........++...+++|+.|+.+++++|++.+ .+||++||..+|+.....+++|+ .+..+.+.|+.+|+
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKL 167 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChhHHHHH
Confidence 998644322345778899999999999999999987 38999999999998777788888 56677889999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
++|.+++.++.+++++++++||+++|||+..
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~ 198 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRG 198 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCC
Confidence 9999999998888999999999999999763
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=217.87 Aligned_cols=184 Identities=28% Similarity=0.477 Sum_probs=144.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCC-CcccccccccCCCceEEEecccccc-----ccC--CCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~ 187 (309)
|+||||||+||||++|+++|++. |++|++++|... ...+.+........++++.+|+.+. ++. ++|+||||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 57999999999999999999998 799999998642 1222222222245788999999875 344 89999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc--CC--------cEEEEeccccccCCCC--C--------CCCCCCC
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--GA--------KFLLTSTSEVYGDPLE--H--------PQKETYW 247 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~--------r~v~iSS~~vy~~~~~--~--------~~~E~~~ 247 (309)
||.........++...+++|+.|+.+++++|.+. ++ +||++||..+|+.... . +++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~-- 158 (361)
T 1kew_A 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET-- 158 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT--
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC--
Confidence 9864322223467788999999999999999887 62 8999999999986532 1 56666
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+..+.+.|+.+|+++|.+++.++.+++++++++||++||||+.. ...+++.+++
T Consensus 159 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~ 213 (361)
T 1kew_A 159 ---TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVIL 213 (361)
T ss_dssp ---SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC--TTSHHHHHHH
T ss_pred ---CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCC--cccHHHHHHH
Confidence 566778999999999999999999888999999999999999862 3455665554
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=208.38 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=140.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
++|+||||||+|+||++|+++|+++|++|++++|...... ...+.++.+|+.+. .+.++|+||||||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag 73 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLGG 73 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence 4679999999999999999999999999999998653322 35788899999876 5678999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
.. ...++...+++|+.|+.++++++++.+. +||++||..+|+. ....+++|+ .+..+.+.|+.||.++|
T Consensus 74 ~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~~~e 144 (267)
T 3rft_A 74 IS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSKCFGE 144 (267)
T ss_dssp CC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred Cc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHH
Confidence 62 3457889999999999999999999886 9999999999974 344566676 57778899999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+++.++.+++++++++||+.|||+..
T Consensus 145 ~~~~~~a~~~g~~~~~vr~~~v~~~~~ 171 (267)
T 3rft_A 145 NLARMYFDKFGQETALVRIGSCTPEPN 171 (267)
T ss_dssp HHHHHHHHHHCCCEEEEEECBCSSSCC
T ss_pred HHHHHHHHHhCCeEEEEEeecccCCCC
Confidence 999999989999999999999999743
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=216.17 Aligned_cols=173 Identities=27% Similarity=0.460 Sum_probs=139.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC------cccccccc--cCCCceEEEecccccc-----ccC--C
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG------RKDNLVHH--FRNPRFELIRHDVVEP-----ILL--E 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~------~~~~~~~~--~~~~~v~~~~~Dl~~~-----~~~--~ 180 (309)
+|+||||||+||||++|+++|+++|++|++++|.... ..+..... .....+.++.+|+.+. ++. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999999999986443 11111111 0124678889999875 344 7
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCH
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSC 258 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~ 258 (309)
+|+||||||.........++...+++|+.|+.+++++|++.++ +||++||..+|+.....+++|+ .+..| .+.
T Consensus 82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~-----~~~~p~~~~ 156 (348)
T 1ek6_A 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA-----HPTGGCTNP 156 (348)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSSH
T ss_pred CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCC-----CCCCCCCCc
Confidence 9999999986433223356778899999999999999999886 8999999999998777788887 45555 689
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCcEEEEEeCceeCCC
Q 021681 259 YDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~-~gi~~~ivRp~~V~Gp~ 293 (309)
|+.+|+++|.+++.++.+ .+++++++||++||||+
T Consensus 157 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 192 (348)
T 1ek6_A 157 YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAH 192 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCC
Confidence 999999999999999876 23999999999999995
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=214.78 Aligned_cols=185 Identities=24% Similarity=0.334 Sum_probs=140.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcc-cccccccCCCceEEEeccccccccC-----CCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILL-----EVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~~~~-----~~D~Vih 186 (309)
.++|+||||||+||||++|+++|+++| ++|++++|...... ..+.. .. ...++.+.+..+..+. ++|+|||
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih 121 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD-LN-IADYMDKEDFLIQIMAGEEFGDVEAIFH 121 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTT-SC-CSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccC-ce-EeeecCcHHHHHHHHhhcccCCCCEEEE
Confidence 456899999999999999999999999 89999998654321 11111 11 1222222222233444 5999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
+||.... ...++...+++|+.|+.+++++|.+.+++||++||..+|+.....+++|+ .+..+.+.|+.+|.++
T Consensus 122 ~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 194 (357)
T 2x6t_A 122 EGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVFGYSKFLF 194 (357)
T ss_dssp CCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHHHHHHHHH
T ss_pred CCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChhHHHHHHH
Confidence 9986443 34578889999999999999999988779999999999998776788887 4667778999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHH
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVA 307 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~ 307 (309)
|.+++.++.+.+++++++||++||||+.... ...+++.+++
T Consensus 195 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~ 237 (357)
T 2x6t_A 195 DEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNT 237 (357)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHH
Confidence 9999999888899999999999999976321 1356666654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=220.17 Aligned_cols=186 Identities=24% Similarity=0.392 Sum_probs=146.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHH-HCCCeEEEEecCCCCc--------ccccc----cccC---CCc---eEEEecccccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGR--------KDNLV----HHFR---NPR---FELIRHDVVEP 176 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll-~~g~~V~~i~r~~~~~--------~~~~~----~~~~---~~~---v~~~~~Dl~~~ 176 (309)
+|+||||||+||||++|+++|+ ++|++|++++|..... .+.+. .... ... +.++.+|+.++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4799999999999999999999 9999999999865432 11110 0001 123 78899999875
Q ss_pred -----ccC--C-CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCC-------CC
Q 021681 177 -----ILL--E-VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL-------EH 240 (309)
Q Consensus 177 -----~~~--~-~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~-------~~ 240 (309)
++. + +|+||||||.........++...+++|+.|+.+++++|++.++ +||++||..+|+... ..
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~ 161 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence 333 5 9999999986433223356788999999999999999999887 899999999998765 56
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC-------CCCcHHHHHH
Q 021681 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL-------DDGRVVSNFV 306 (309)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~-------~~~~~i~~~i 306 (309)
+++|+ ++..+.+.|+.+|+++|.+++.++.+++++++++||++||||+... ....+++.++
T Consensus 162 ~~~E~-----~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~ 229 (397)
T 1gy8_A 162 PIDIN-----AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIIL 229 (397)
T ss_dssp CBCTT-----SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHH
T ss_pred CcCcc-----CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHH
Confidence 77777 4567778999999999999999998889999999999999997421 1356677665
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=223.18 Aligned_cols=181 Identities=23% Similarity=0.260 Sum_probs=136.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc----------------cccc--ccCCCceEEEecccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD----------------NLVH--HFRNPRFELIRHDVV 174 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~----------------~~~~--~~~~~~v~~~~~Dl~ 174 (309)
..++++||||||+||||++|+++|+++|++|+++++....... .... ......++++.+|+.
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 4578899999999999999999999999999999875332100 0000 011346788999998
Q ss_pred cc-----ccCC--CCEEEEcccCCCCCCCcCCh---hHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCC
Q 021681 175 EP-----ILLE--VDQIYHLACPASPVHYKYNP---VKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 175 ~~-----~~~~--~D~Vih~A~~~~~~~~~~~~---~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~ 242 (309)
++ ++.+ +|+||||||.........++ ...+++|+.|+.+++++|++.+. +||++||.++|+... .++
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~ 166 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDI 166 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCB
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCC
Confidence 75 3445 99999999864332222333 34789999999999999998873 899999999998754 456
Q ss_pred CCCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 243 KETYWGNV---------NPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 243 ~E~~~~~~---------~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+|+.|... .+..+.+.|+.+|+++|.+++.++.++|++++++||++||||+.
T Consensus 167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~ 227 (404)
T 1i24_A 167 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 227 (404)
T ss_dssp CSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred CccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence 66543211 24566789999999999999999888899999999999999986
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=212.31 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=131.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
.+|+||||||+||||++|+++|+++|++|++++|....... + ....++++.+|+.+. .+.++|+|||+||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-l----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR-L----AYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG-G----GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh-h----ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 44699999999999999999999999999999986543221 1 123678889998775 5678999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCC--CCCCCCCCCCCCCCCC----CCHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE--HPQKETYWGNVNPIGE----RSCYDEG 262 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~--~~~~E~~~~~~~~~~~----~~~Y~~s 262 (309)
... ....++...+++|+.++.+++++|++.++ +||++||..+|+.... .+ +|+ .+..| .+.|+.+
T Consensus 87 ~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y~~s 158 (342)
T 2x4g_A 87 YYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSYVLC 158 (342)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHHHHH
T ss_pred cCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChHHHH
Confidence 543 22346778899999999999999999886 9999999999987554 34 676 45556 7899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|+++|.+++.++.. |++++++||++||||+.
T Consensus 159 K~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 159 KWALDEQAREQARN-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred HHHHHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence 99999999998876 99999999999999976
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=211.56 Aligned_cols=191 Identities=22% Similarity=0.244 Sum_probs=144.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEE-ecccccc-----ccCCCCE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELI-RHDVVEP-----ILLEVDQ 183 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~-~~Dl~~~-----~~~~~D~ 183 (309)
..++|+||||||+||||++|+++|+++|++|++++|+..... .+...+ ....++++ .+|+.+. .+.++|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHH-HHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 457889999999999999999999999999999998643221 111110 12467777 7888765 4567999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHH-cCC-cEEEEeccccccCCCC----CCCCCCCCCCC-------
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR-VGA-KFLLTSTSEVYGDPLE----HPQKETYWGNV------- 250 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~-r~v~iSS~~vy~~~~~----~~~~E~~~~~~------- 250 (309)
||||||.... ..++...+++|+.|+.+++++|.+ .+. +||++||..+|+.... .+++|+.|...
T Consensus 87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence 9999986432 356788999999999999999985 454 8999999999864322 56777754211
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCCCCCCCC-cHHHHHHH
Q 021681 251 ----NPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCLDDG-RVVSNFVA 307 (309)
Q Consensus 251 ----~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~~~~~~~-~~i~~~i~ 307 (309)
.+..+.+.|+.+|+++|.+++.++.++ +++++++||++||||....... ..++.|++
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~ 227 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMM 227 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHH
Confidence 123455789999999999999998775 7899999999999998644322 26666654
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=208.00 Aligned_cols=181 Identities=25% Similarity=0.353 Sum_probs=139.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCccc-ccccccCCCceEEEeccccccccC-----CCCEEEEcccC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKD-NLVHHFRNPRFELIRHDVVEPILL-----EVDQIYHLACP 190 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~-~~~~~~~~~~v~~~~~Dl~~~~~~-----~~D~Vih~A~~ 190 (309)
+||||||+||||++|+++|+++| ++|++++|....... ... ... ...++.+.+..+..+. ++|+|||+|+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 78 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV-DLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC 78 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH-TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcC-cce-eccccccHHHHHHHHhccccCCCcEEEECccc
Confidence 48999999999999999999999 899999986543211 111 111 1223333333333454 49999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
... ...++...+++|+.|+.+++++|++.++++|++||..+|+.....+.+|+ .+..|.+.|+.+|.++|.++
T Consensus 79 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~e~~~ 151 (310)
T 1eq2_A 79 SST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYV 151 (310)
T ss_dssp CCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHH
T ss_pred ccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHHH
Confidence 443 44578889999999999999999988789999999999998776678887 46677789999999999999
Q ss_pred HHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHH
Q 021681 271 MDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVA 307 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~ 307 (309)
+.++.+.+++++++||++||||+.... ...+++.+++
T Consensus 152 ~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~ 190 (310)
T 1eq2_A 152 RQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNT 190 (310)
T ss_dssp HHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHH
Confidence 999888899999999999999976321 1355666554
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=209.63 Aligned_cols=177 Identities=28% Similarity=0.433 Sum_probs=139.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCE
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQ 183 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~ 183 (309)
...+++|+||||||+||||++|+++|+++|++|++++|......+.... ...++++.+|+.+. .+. ++|+
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---l~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 91 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP---VAGLSVIEGSVTDAGLLERAFDSFKPTH 91 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS---CTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc---cCCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence 4456789999999999999999999999999999999864433211111 14688899999875 455 8999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCC--CCCCCCCCCCCCCCCCCHHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH--PQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~--~~~E~~~~~~~~~~~~~~Y~ 260 (309)
||||||..... ...++. +++|+.|+.+++++|.+.++ +||++||..+|+..... +++|+ . .+.+.|+
T Consensus 92 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~-----~--~~~~~Y~ 161 (330)
T 2pzm_A 92 VVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSP-----T--APFTSYG 161 (330)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCC-----C--CCCSHHH
T ss_pred EEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCC-----C--CCCChHH
Confidence 99999865432 222333 89999999999999998887 99999999999865443 67776 2 5568999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+|+++|.+++.+ +++++++||+++|||+. ...+++.+++
T Consensus 162 ~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~---~~~~~~~~~~ 201 (330)
T 2pzm_A 162 ISKTAGEAFLMMS----DVPVVSLRLANVTGPRL---AIGPIPTFYK 201 (330)
T ss_dssp HHHHHHHHHHHTC----SSCEEEEEECEEECTTC---CSSHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCEEEEeeeeeECcCC---CCCHHHHHHH
Confidence 9999999998775 79999999999999985 2345555554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-27 Score=210.38 Aligned_cols=178 Identities=22% Similarity=0.315 Sum_probs=137.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--CCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih 186 (309)
+++|+||||||+||||++|+++|+++|+ + ..... ..++.+.+|+.++ .+.+ +|+|||
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~----~~~~~------~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih 67 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------L----PGEDW------VFVSSKDADLTDTAQTRALFEKVQPTHVIH 67 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------C----TTCEE------EECCTTTCCTTSHHHHHHHHHHSCCSEEEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------c----ccccc------cccCceecccCCHHHHHHHHhhcCCCEEEE
Confidence 5688999999999999999999999997 1 00000 1122234566554 4444 999999
Q ss_pred cccCCCCC-CCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC-HHHHHH
Q 021681 187 LACPASPV-HYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS-CYDEGK 263 (309)
Q Consensus 187 ~A~~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK 263 (309)
+|+..... ....++...+++|+.|+.+++++|++.++ +|||+||..+|+.....+++|+.+.. .+..+.+ .|+.+|
T Consensus 68 ~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK 146 (319)
T 4b8w_A 68 LAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHN-GPPHNSNFGYSYAK 146 (319)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGB-SCCCSSSHHHHHHH
T ss_pred CceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCcccccccc-CCCCCCcchHHHHH
Confidence 99864321 23457788899999999999999999997 89999999999988888888885321 1444555 699999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHHh
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVAQ 308 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~~ 308 (309)
.++|.+++.++++.+++++++||++||||+.... .+.+++.|+.+
T Consensus 147 ~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~ 193 (319)
T 4b8w_A 147 RMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHK 193 (319)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHH
Confidence 9999999999988999999999999999987532 35677777654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=211.29 Aligned_cols=176 Identities=26% Similarity=0.307 Sum_probs=143.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc-ccccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-NLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~-~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
++|+||||||+||||++++++|+++|++|++++|....... .+........++++.+|+.+. .+. ++|+|||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 81 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN 81 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999999999987543221 111111234688888999875 233 4799999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC--CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
|||.........++...+++|+.|+.+++++|.+.+ .+||++||..+||.....+++|+ .+..+.+.|+.+|+
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~sK~ 156 (345)
T 2z1m_A 82 LAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKL 156 (345)
T ss_dssp CCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHHHH
Confidence 998643322345788899999999999999999887 48999999999998777777887 56677889999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
++|.+++.++.++++++.++|++++|||+..
T Consensus 157 ~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~ 187 (345)
T 2z1m_A 157 FGHWITVNYREAYNMFACSGILFNHESPLRG 187 (345)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred HHHHHHHHHHHHhCCceEeeeeeeecCCCCC
Confidence 9999999999888999999999999999853
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=213.05 Aligned_cols=173 Identities=28% Similarity=0.332 Sum_probs=140.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc------CCCceEEEecccccc-----ccC--CCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF------RNPRFELIRHDVVEP-----ILL--EVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~------~~~~v~~~~~Dl~~~-----~~~--~~D 182 (309)
|+||||||+||||++|+++|+++|++|++++|...... ..+.... ....++++.+|+.++ .+. ++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999998754321 1111110 234678889999875 233 479
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC----CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
+||||||.........++...+++|+.|+.+++++|.+.+ .+||++||..+|+.....+++|+ .+..+.+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~~ 179 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSP 179 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCSH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 9999998643222235678889999999999999999887 48999999999998777788887 56667789
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|+.+|+++|.+++.++.+++++++++||+++|||+.
T Consensus 180 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~ 215 (375)
T 1t2a_A 180 YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCC
Confidence 999999999999999988899999999999999975
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=209.60 Aligned_cols=172 Identities=27% Similarity=0.510 Sum_probs=136.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----ccC--CCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~ 187 (309)
|+||||||+||||++++++|+++|++|+++++............ .....+.++.+|+.++ .+. ++|+||||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 58999999999999999999999999999987543322211110 0123567888998875 232 59999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEGKRT 265 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~~ 265 (309)
||.........++...+++|+.|+.+++++|++.++ +||++||..+|+.....+.+|+ .+..+ .+.|+.+|++
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~~Y~~sK~~ 155 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVES-----FPTGTPQSPYGKSKLM 155 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTT-----SCCCCCSSHHHHHHHH
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcc-----cCCCCCCChHHHHHHH
Confidence 986432223345677899999999999999998886 8999999999987766677777 34433 6899999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 266 AETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 266 ~E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
+|.+++.++.+. +++++++||+++|||.
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~ 184 (338)
T 1udb_A 156 VEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred HHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence 999999998776 8999999999999984
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=210.23 Aligned_cols=174 Identities=32% Similarity=0.425 Sum_probs=139.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-ccccccc-----CCCceEEEecccccc-----ccC--CCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF-----RNPRFELIRHDVVEP-----ILL--EVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~-----~~~~v~~~~~Dl~~~-----~~~--~~D 182 (309)
||+||||||+||||++++++|+++|++|++++|...... +.+.... ....+.++.+|+.++ .+. ++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 579999999999999999999999999999998654311 1111111 124678888999875 233 479
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC----CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
+||||||.........++...+++|+.|+.+++++|.+.+ .+||++||..+|+.....+.+|+ .+..+.+.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~~ 155 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 155 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 9999999755444456788889999999999999999887 48999999999998776678887 56667889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|+.+|+++|.+++.++.+++++++++|++++|||+.
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~ 191 (372)
T 1db3_A 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCC
Confidence 999999999999999988899999999999999976
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=208.28 Aligned_cols=177 Identities=25% Similarity=0.382 Sum_probs=134.9
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--C
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--V 181 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~ 181 (309)
++....+||+||||||+||||++|+++|+++|++|++++|......+.+.. ...++++.+|+.+. ++.+ +
T Consensus 14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 14 LVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred eeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCC
Confidence 445567889999999999999999999999999999999865433222221 14688899999875 3455 9
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccccc----CCCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~----~~~~~~~~E~~~~~~~~~~~~ 256 (309)
|+||||||..... ...++. +++|+.++.+++++|.+.++ +||++||..+|+ .... +++|+. .+.
T Consensus 91 D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p~ 159 (333)
T 2q1w_A 91 DAVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NPA 159 (333)
T ss_dssp SEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CCT
T ss_pred cEEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CCC
Confidence 9999999865432 222333 89999999999999999887 999999999998 5444 677762 455
Q ss_pred -CHHHHHHHHHHHHHHH-HHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 257 -SCYDEGKRTAETLTMD-YHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 257 -~~Y~~sK~~~E~~v~~-~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+.|+.+|+++|.+++. ++ +++++||+++|||+. ...+++.+++
T Consensus 160 ~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~---~~~~~~~~~~ 204 (333)
T 2q1w_A 160 NSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRN---VSGPLPIFFQ 204 (333)
T ss_dssp TCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC---CSSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC---cCcHHHHHHH
Confidence 7999999999999987 54 899999999999982 2456666664
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=210.04 Aligned_cols=167 Identities=22% Similarity=0.251 Sum_probs=136.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih 186 (309)
+|+||||||+||||++|+++|+++ |++|++++|...... .. ..++++.+|+.+. .+. ++|+|||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih 74 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD--VV-----NSGPFEVVNALDFNQIEHLVEVHKITDIYL 74 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH--HH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc--cc-----CCCceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence 478999999999999999999999 899999998644321 11 2356788888765 344 7999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCC-CCCCCCCCCCCCCCCCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE-HPQKETYWGNVNPIGERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (309)
+||.... ....++...+++|+.++.+++++|++.++ ++|++||..+|+.... .+.+|+ .+..+.+.|+.+|+
T Consensus 75 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 148 (312)
T 2yy7_A 75 MAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGISKQ 148 (312)
T ss_dssp CCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHHHH
T ss_pred CCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHHHH
Confidence 9985332 12356788899999999999999999887 8999999999987543 456666 46677899999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
++|.+++.++.+++++++++||+++|||+..
T Consensus 149 ~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~ 179 (312)
T 2yy7_A 149 AGERWCEYYHNIYGVDVRSIRYPGLISWSTP 179 (312)
T ss_dssp HHHHHHHHHHHHHCCEEECEEECEEECSSSC
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCeEecCCCC
Confidence 9999999998888999999999999998653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=212.05 Aligned_cols=178 Identities=21% Similarity=0.299 Sum_probs=129.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc--cccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~--~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
+|+||||||+||||++|+++|+++|++|++++|+....... +........++++.+|+.++ .+.++|+|||+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 67999999999999999999999999999988764322110 00110124678888998775 467899999999
Q ss_pred cCCCCCCCcCCh-hHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccc-cccCCC---CCCCCCCCCCCCCC---CCCC-C
Q 021681 189 CPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE-VYGDPL---EHPQKETYWGNVNP---IGER-S 257 (309)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~-vy~~~~---~~~~~E~~~~~~~~---~~~~-~ 257 (309)
+.... ...++ ...+++|+.||.+++++|.+.+ + |||++||.. +|+... ..+++|+.|...+. ..+. .
T Consensus 89 ~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 166 (338)
T 2rh8_A 89 TPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW 166 (338)
T ss_dssp SCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred CccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence 85421 11233 3478999999999999999985 5 899999976 444321 13678886643322 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.||.++|.+++.++.++|++++++||++||||+..
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~ 204 (338)
T 2rh8_A 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLT 204 (338)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSS
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCC
Confidence 59999999999999988778999999999999999864
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-27 Score=209.41 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=133.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC--CCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~--~~D~Vih~A~~~~~~ 194 (309)
|+||||||+||||++++++|+++|++|++++|.. .++.+.+.....+. ++|+|||+||.....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL---------------LDITNISQVQQVVQEIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT---------------SCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc---------------cCCCCHHHHHHHHHhcCCCEEEECCcccChH
Confidence 3899999999999999999999999999998721 11111122233444 699999999876544
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a 274 (309)
....++...+++|+.++.+++++|++.++|+|++||..+|+.....+++|+ ++..|.+.|+.+|.++|.+++.++
T Consensus 71 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~~~~ 145 (287)
T 3sc6_A 71 QAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIYGASKYAGEQFVKELH 145 (287)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHhC
Confidence 445678899999999999999999999989999999999998888888888 677788999999999999998864
Q ss_pred HhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 275 RGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 275 ~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+++++||++||||+. ..+++.+++
T Consensus 146 ----~~~~ilR~~~v~G~~~----~~~~~~~~~ 170 (287)
T 3sc6_A 146 ----NKYFIVRTSWLYGKYG----NNFVKTMIR 170 (287)
T ss_dssp ----SSEEEEEECSEECSSS----CCHHHHHHH
T ss_pred ----CCcEEEeeeeecCCCC----CcHHHHHHH
Confidence 3789999999999964 346666654
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=207.68 Aligned_cols=184 Identities=23% Similarity=0.290 Sum_probs=146.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCC-------CeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-C
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-L 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g-------~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-~ 179 (309)
.+++|+||||||+||||++|+++|+++| ++|++++|....... .....++++.+|+.++ .+ .
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~ 85 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEA 85 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhc
Confidence 3578899999999999999999999999 799999986432221 1234678889999875 34 4
Q ss_pred CCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-----C-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-----A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-----~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
++|+||||||.... ....++...+++|+.|+.+++++|++.+ + +||++||..+|+.....+++|+ ++.
T Consensus 86 ~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~ 159 (342)
T 2hrz_A 86 RPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHT 159 (342)
T ss_dssp CCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCC
T ss_pred CCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCC
Confidence 89999999985431 1234678889999999999999998875 4 8999999999987656678887 566
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeC-CCCCCCC-CcHHHHHHH
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG-PRMCLDD-GRVVSNFVA 307 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~G-p~~~~~~-~~~i~~~i~ 307 (309)
.+.+.|+.+|+++|.+++.++.+.+++.+++|++.||| |+..... ..+++.+++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~ 215 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILR 215 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHH
Confidence 77889999999999999999888889999999999999 7643211 345666554
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=219.84 Aligned_cols=191 Identities=23% Similarity=0.243 Sum_probs=145.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHC---CCeEEEEecCCCCcc--cccccccC--------------CCceEEEeccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR---GDEVIVIDNFFTGRK--DNLVHHFR--------------NPRFELIRHDV 173 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~---g~~V~~i~r~~~~~~--~~~~~~~~--------------~~~v~~~~~Dl 173 (309)
..++|+||||||+||||++|+++|+++ |++|++++|...... ..+...+. ..+++++.+|+
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 356889999999999999999999999 899999998754321 11111111 25789999999
Q ss_pred ccc-----------ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCC
Q 021681 174 VEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 174 ~~~-----------~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~ 241 (309)
.++ .+.++|+||||||.... .++...+++|+.|+.+++++|.+.++ +||++||.++|+.....+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 744 34579999999986543 55667889999999999999999887 899999999999877777
Q ss_pred CCCCCCCCC-CC-----CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC---CCCCcHHHHHHH
Q 021681 242 QKETYWGNV-NP-----IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC---LDDGRVVSNFVA 307 (309)
Q Consensus 242 ~~E~~~~~~-~~-----~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~---~~~~~~i~~~i~ 307 (309)
+.|+..... ++ ....+.|+.+|+++|.+++.++.+.|++++++|||+||||+.. .....++..++.
T Consensus 226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~ 300 (478)
T 4dqv_A 226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVL 300 (478)
T ss_dssp CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHH
T ss_pred cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHH
Confidence 777632100 00 0112459999999999999998888999999999999998541 123456666654
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=209.89 Aligned_cols=179 Identities=23% Similarity=0.349 Sum_probs=137.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC--CCCEEEEcccCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL--EVDQIYHLACPAS 192 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~--~~D~Vih~A~~~~ 192 (309)
++|+||||||+||||++|+++|+++|++|+++++.. ..++.+.+.....+. ++|+|||+|+...
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 67 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLDSRAVHDFFASERIDQVYLAAAKVG 67 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------cCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence 357999999999999999999999999999877531 111111122233455 8999999998543
Q ss_pred CC-CCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q 021681 193 PV-HYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETL 269 (309)
Q Consensus 193 ~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~ 269 (309)
.. ....++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+.+.. .+..|. +.|+.+|.++|.+
T Consensus 68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~E~~ 146 (321)
T 1e6u_A 68 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIAKIAGIKL 146 (321)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHHHHHHHHH
T ss_pred CcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHHHHHHHHH
Confidence 21 12346778899999999999999999887 89999999999987777888875421 133443 5899999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHHh
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVAQ 308 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~~ 308 (309)
++.++.+.+++++++||++||||+.... ...+++.++++
T Consensus 147 ~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~ 187 (321)
T 1e6u_A 147 CESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRR 187 (321)
T ss_dssp HHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHH
Confidence 9999888899999999999999986432 23567766653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=198.62 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=130.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+|+||||||+||||++++++|+++|++|++++|........ ...++++.+|+.++ .++++|+|||||+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE------NEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC------CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc------cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 57999999999999999999999999999999865433211 25788999999775 56789999999975
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.. +....+++|+.++.+++++|++.++ ++|++||..+|+...... .|+ .+..+.+.|+.+|..+|.+
T Consensus 78 ~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y~~sK~~~e~~ 145 (227)
T 3dhn_A 78 GW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENILPGVKALGEFY 145 (227)
T ss_dssp ------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGHHHHHHHHHHH
T ss_pred CC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHHHHHHHHHHHH
Confidence 31 1223677999999999999999987 899999998776543322 222 3556778999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
++.++++.+++++++||+++|||+..
T Consensus 146 ~~~~~~~~~~~~~ilrp~~v~g~~~~ 171 (227)
T 3dhn_A 146 LNFLMKEKEIDWVFFSPAADMRPGVR 171 (227)
T ss_dssp HHTGGGCCSSEEEEEECCSEEESCCC
T ss_pred HHHHhhccCccEEEEeCCcccCCCcc
Confidence 99988788999999999999999753
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=224.00 Aligned_cols=191 Identities=25% Similarity=0.424 Sum_probs=150.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih 186 (309)
.++|+||||||+||||++|+++|+++ |++|++++|....... ......++++.+|+.+. .+.++|+|||
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih 388 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 388 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEEE
Confidence 46789999999999999999999998 8999999986543221 22345788899999864 3347999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC-CCC-CCCCCHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNP-IGERSCYDEGKR 264 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~-~~~-~~~~~~Y~~sK~ 264 (309)
|||.........++...+++|+.|+.+++++|.+.+.+||++||..+|+.....+++|+.+.. ..+ ..+.+.|+.+|+
T Consensus 389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~ 468 (660)
T 1z7e_A 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ 468 (660)
T ss_dssp CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHH
Confidence 998654433445778899999999999999999888899999999999987777778874321 011 145678999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC------CCCcHHHHHHHh
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCL------DDGRVVSNFVAQ 308 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~------~~~~~i~~~i~~ 308 (309)
++|.+++.++.+.+++++++||++||||+... ....+++.|+++
T Consensus 469 ~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 518 (660)
T 1z7e_A 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 518 (660)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHH
Confidence 99999999988889999999999999998632 124566666553
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=204.78 Aligned_cols=179 Identities=21% Similarity=0.303 Sum_probs=131.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc--ccccccC-CCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHFR-NPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~--~~~~~~~-~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
++|+||||||+||||++|+++|+++|++|++++|+...... .+..... ...++++.+|+.++ ++.++|+|||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 83 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH 83 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 56899999999999999999999999999998886432110 0101100 12578888998875 4678999999
Q ss_pred cccCCCCCCCcCCh-hHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccc-cccCCC-CCCCCCCCCCCCCC---C-CCCC
Q 021681 187 LACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE-VYGDPL-EHPQKETYWGNVNP---I-GERS 257 (309)
Q Consensus 187 ~A~~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~-vy~~~~-~~~~~E~~~~~~~~---~-~~~~ 257 (309)
+|+... ....++ ...+++|+.||.+++++|.+.+ + +||++||.. +|+... ..+.+|+.|...+. . .+.+
T Consensus 84 ~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (337)
T 2c29_D 84 VATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW 161 (337)
T ss_dssp CCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred eccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccc
Confidence 998541 122233 3588999999999999999887 5 899999987 454332 23466764422110 0 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.+|.++|.+++.++.++|++++++||++||||+..
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~ 199 (337)
T 2c29_D 162 MYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIM 199 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCC
Confidence 79999999999999988778999999999999999763
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=205.97 Aligned_cols=161 Identities=20% Similarity=0.177 Sum_probs=131.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--CCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih~A~ 189 (309)
|+||||||+||||++|+++|+ +|++|++++|... .+.+|+.+. .+.+ +|+|||+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~----------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK----------------EFCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS----------------SSCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc----------------cccccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 589999999999999999999 8999999987531 123455443 4444 999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.........++...+++|+.|+.+++++|++.++|+|++||..+|+.....+++|+ ++..|.+.|+.+|.++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 138 (299)
T 1n2s_A 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKA 138 (299)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHHHHHHHHHHHH
Confidence 64432345678889999999999999999998889999999999998777788888 5667789999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
++.++ .+++++||+++|||+.. .+++.+++
T Consensus 139 ~~~~~----~~~~ilRp~~v~G~~~~----~~~~~~~~ 168 (299)
T 1n2s_A 139 LQDNC----PKHLIFRTSWVYAGKGN----NFAKTMLR 168 (299)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC----CHHHHHHH
T ss_pred HHHhC----CCeEEEeeeeecCCCcC----cHHHHHHH
Confidence 98864 38999999999999752 45665554
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-26 Score=204.97 Aligned_cols=177 Identities=21% Similarity=0.335 Sum_probs=127.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec-CCCCc--ccccccccC--CCceEEEecccccc-----ccCCCCEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGR--KDNLVHHFR--NPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r-~~~~~--~~~~~~~~~--~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
+|+||||||+||||++|+++|+++|++|++++| +.... ...+.. +. ...+.++.+|+.++ ++.++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTN-LPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHT-STTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHh-hhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 579999999999999999999999999999887 43211 111111 11 12567788888775 467899999
Q ss_pred EcccCCCCCCCcCC-hhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccc-cCCC-CCCCCCCCCCCCC---CCCCCC
Q 021681 186 HLACPASPVHYKYN-PVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVY-GDPL-EHPQKETYWGNVN---PIGERS 257 (309)
Q Consensus 186 h~A~~~~~~~~~~~-~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~vy-~~~~-~~~~~E~~~~~~~---~~~~~~ 257 (309)
|+|+.. .....+ +...+++|+.|+.+++++|.+. ++ +||++||..++ +... ..+.+|+.|.... +..+..
T Consensus 80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 999642 111222 3458999999999999999987 55 89999998754 3322 2356666442211 112233
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 -CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 -~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.||.++|.++++++..+|++++++||++||||...
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~ 196 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC 196 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCS
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCC
Confidence 69999999999999988778999999999999999753
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=198.35 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=135.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+|+||||||+||||++|+++|+++|++|++++|...... ...+.++.+|+.++ .+.++|+||||||.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 468999999999999999999999999999998653211 13467888888765 56789999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
. ...++...+++|+.++.++++++++.+. +||++||..+|+.. ...+++|+ .+..+.+.|+.+|+++|.
T Consensus 74 ~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 144 (267)
T 3ay3_A 74 S----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSKCFGED 144 (267)
T ss_dssp C----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHHH
Confidence 4 2356788899999999999999999886 89999999999864 34577787 566778999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
+++.++.+++++++++||+++|+
T Consensus 145 ~~~~~~~~~gi~~~~lrp~~v~~ 167 (267)
T 3ay3_A 145 LASLYYHKFDIETLNIRIGSCFP 167 (267)
T ss_dssp HHHHHHHTTCCCEEEEEECBCSS
T ss_pred HHHHHHHHcCCCEEEEeceeecC
Confidence 99998888899999999999985
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-26 Score=208.46 Aligned_cols=174 Identities=26% Similarity=0.340 Sum_probs=138.7
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHC-CC-eEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCC
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVD 182 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~-g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D 182 (309)
....+++|+||||||+|+||++++++|+++ |+ +|++++|...... .+...+....+.++.+|+.+. ++.++|
T Consensus 15 ~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 93 (344)
T 2gn4_A 15 HQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS-EMAMEFNDPRMRFFIGDVRDLERLNYALEGVD 93 (344)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH-HHHHHHCCTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred HHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH-HHHHHhcCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999999999 97 9999998543221 111222345788999999875 567899
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
+|||+||.......+.++...+++|+.|+.+++++|.+.++ ++|++||..++ . |.+.|+.
T Consensus 94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~----------------~---p~~~Y~~ 154 (344)
T 2gn4_A 94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA----------------N---PINLYGA 154 (344)
T ss_dssp EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS----------------S---CCSHHHH
T ss_pred EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC----------------C---CccHHHH
Confidence 99999986543334456788999999999999999999987 89999997755 1 3478999
Q ss_pred HHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 262 GKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 262 sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
+|+++|.+++.++.+ .+++++++|||+||||+ +.+++.|+++
T Consensus 155 sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~-----~~~i~~~~~~ 199 (344)
T 2gn4_A 155 TKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR-----GSVVPFFKKL 199 (344)
T ss_dssp HHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCT-----TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCC-----CCHHHHHHHH
Confidence 999999999998764 58999999999999985 4577777654
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=200.97 Aligned_cols=161 Identities=28% Similarity=0.346 Sum_probs=132.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEcc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A 188 (309)
+||||||+||||++|+++|+++ |++|+++++...... .+.++.+|+.++ .+. ++|+|||+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 70 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLA 70 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence 4899999999999999999998 789999987543221 345778888775 344 799999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
+.... ....++...+++|+.|+.+++++|++.++ ++|++||..+|+... ..+.+|+ .+..|.+.|+.+|.++
T Consensus 71 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK~~~ 144 (317)
T 3ajr_A 71 GILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTKIAA 144 (317)
T ss_dssp CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHHHHH
T ss_pred cccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHHHHH
Confidence 85322 12346778899999999999999999887 899999999998643 3455565 5667789999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
|.+++.++.+++++++++||+++|||.+
T Consensus 145 e~~~~~~~~~~~~~~~~lR~~~~~g~~~ 172 (317)
T 3ajr_A 145 ELLGQYYYEKFGLDVRSLRYPGIISYKA 172 (317)
T ss_dssp HHHHHHHHHHHCCEEEEEEECEEECSSS
T ss_pred HHHHHHHHHhcCCeEEEEecCcEeccCC
Confidence 9999999888899999999999999865
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=206.62 Aligned_cols=172 Identities=26% Similarity=0.322 Sum_probs=138.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccccC-----CC-ceEEEecccccc-----ccC--CCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFR-----NP-RFELIRHDVVEP-----ILL--EVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~~-----~~-~v~~~~~Dl~~~-----~~~--~~D 182 (309)
|+||||||+||||++|+++|+++|++|++++|...... ..+..... .. .+.++.+|+.+. .+. ++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 69999999999999999999999999999998754311 11111111 12 678889999875 333 479
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC------CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~------~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
+||||||.........++...+++|+.|+.+++++|.+.+ .+||++||..+|+.... +++|+ .+..+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~~~ 182 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHPR 182 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCCCC
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCCCC
Confidence 9999998643322235678889999999999999998765 28999999999998666 77887 566778
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+.|+.+|+++|.+++.++.+++++++++|++++|||+.
T Consensus 183 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~ 220 (381)
T 1n7h_A 183 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 220 (381)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCC
Confidence 99999999999999999988899999999999999985
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=202.22 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=109.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A 188 (309)
+|+||||||+||||++|+++|+++|++|++++|.... .. ++.+|+.++ .+. ++|+|||||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 5799999999999999999999999999999875322 01 445565543 344 489999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
|.........++...+++|+.|+.+++++|.+.++++|++||..+|+. ...+++|+ ++..+.+.|+.+|.++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 142 (315)
T 2ydy_A 69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLYGKTKLDGEK 142 (315)
T ss_dssp -------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHHHHHHHHHHH
Confidence 865443345577888999999999999999998889999999999987 56677887 566677899999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+++.+ +++++++||++||||+..
T Consensus 143 ~~~~~----~~~~~~lR~~~v~G~~~~ 165 (315)
T 2ydy_A 143 AVLEN----NLGAAVLRIPILYGEVEK 165 (315)
T ss_dssp HHHHH----CTTCEEEEECSEECSCSS
T ss_pred HHHHh----CCCeEEEeeeeeeCCCCc
Confidence 99875 467899999999999764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=200.75 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=129.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccc-----cccC--CCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILL--EVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-----~~~~--~~D~Vih~A 188 (309)
.|+||||||+||||++|+++|+++|++|++++|. .+|+.+ ..+. ++|+|||||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih~A 71 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVINCA 71 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 3699999999999999999999999999999874 134433 3445 799999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
|.........++...+++|+.|+.+++++|++.++++|++||..+|+.....+++|+ .+..+.+.|+.+|+++|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~E~ 146 (292)
T 1vl0_A 72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGEN 146 (292)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHHHHHHHHHHH
Confidence 864322233577889999999999999999998889999999999998776788888 566777899999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
+++.++ .+++++||++||||+ ..+++.+++
T Consensus 147 ~~~~~~----~~~~~lR~~~v~G~~-----~~~~~~~~~ 176 (292)
T 1vl0_A 147 FVKALN----PKYYIVRTAWLYGDG-----NNFVKTMIN 176 (292)
T ss_dssp HHHHHC----SSEEEEEECSEESSS-----SCHHHHHHH
T ss_pred HHHhhC----CCeEEEeeeeeeCCC-----cChHHHHHH
Confidence 998864 479999999999992 235555543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=200.73 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=126.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC-CCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE-VDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~-~D~Vih~A 188 (309)
++|+||||| +||||++|+++|+++|++|++++|..... ...++++.+|+.+. .+.+ +|+|||+|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 467999999 59999999999999999999999864432 24567788888765 3445 99999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
|.. ..++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..|.+.|+.+|.++|
T Consensus 72 ~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E 141 (286)
T 3gpi_A 72 AAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRMLEAE 141 (286)
T ss_dssp HHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHHHHHH
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHHHHHH
Confidence 852 235567788999999999999998886 8999999999998887788888 67778899999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+ +.+ ++++++||++||||+.
T Consensus 142 ~~-~~~-----~~~~ilR~~~v~G~~~ 162 (286)
T 3gpi_A 142 AL-LAA-----YSSTILRFSGIYGPGR 162 (286)
T ss_dssp HH-GGG-----SSEEEEEECEEEBTTB
T ss_pred HH-Hhc-----CCeEEEecccccCCCc
Confidence 98 542 9999999999999975
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=202.13 Aligned_cols=175 Identities=22% Similarity=0.201 Sum_probs=130.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc------cccccc-------cCCCceEEEecccccc----
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK------DNLVHH-------FRNPRFELIRHDVVEP---- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~------~~~~~~-------~~~~~v~~~~~Dl~~~---- 176 (309)
..+|+||||||+||||++|+++|++.|++|++++|...... +.+... ....++.++.+|+.++
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 45789999999999999999999999999999998755211 001000 0125788899999884
Q ss_pred ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC-----CCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD-----PLEHPQKETYWGNVN 251 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~-----~~~~~~~E~~~~~~~ 251 (309)
.+.++|+||||||... ...++...+++|+.|+.+++++|.+.+.+||++||..+ |. ....++.|+.+. .
T Consensus 147 ~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~--~ 220 (427)
T 4f6c_A 147 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--K 220 (427)
T ss_dssp CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC--S
T ss_pred CcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCccccccccc--c
Confidence 3467999999998643 34567888999999999999999994459999999988 44 234566676432 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+..+.+.|+.+|+++|.+++.++ +.|++++++|||+||||...
T Consensus 221 ~~~~~~~Y~~sK~~~E~~~~~~~-~~g~~~~ivRpg~v~G~~~~ 263 (427)
T 4f6c_A 221 GQLLTSPYTRSKFYSELKVLEAV-NNGLDGRIVRVGNLTSPYNG 263 (427)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCEESCSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHH-HcCCCEEEEeCCeeecCCCC
Confidence 24477999999999999999976 47899999999999999764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=186.18 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=123.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCce-EEEecccc---ccccCCCCEEEE
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVV---EPILLEVDQIYH 186 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v-~~~~~Dl~---~~~~~~~D~Vih 186 (309)
...+++|+||||||+|+||++++++|+++|++|++++|+....... ....+ +++.+|++ ...+.++|+|||
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL-----RERGASDIVVANLEEDFSHAFASIDAVVF 90 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-----HHTTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH-----HhCCCceEEEcccHHHHHHHHcCCCEEEE
Confidence 3456889999999999999999999999999999999865432211 11256 78888886 335678999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
|||... ..++...+++|+.++.+++++|++.+. +||++||...+.. |. .+ .+.+.|+.+|.+
T Consensus 91 ~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y~~sK~~ 153 (236)
T 3e8x_A 91 AAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHYLVAKRL 153 (236)
T ss_dssp CCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHHHHHHHH
T ss_pred CCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhHHHHHHH
Confidence 998543 357889999999999999999999886 8999999654421 11 11 345789999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+|.+++ ..+++++++|||.+||+..
T Consensus 154 ~e~~~~----~~gi~~~~lrpg~v~~~~~ 178 (236)
T 3e8x_A 154 ADDELK----RSSLDYTIVRPGPLSNEES 178 (236)
T ss_dssp HHHHHH----HSSSEEEEEEECSEECSCC
T ss_pred HHHHHH----HCCCCEEEEeCCcccCCCC
Confidence 999876 5789999999999999863
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=215.46 Aligned_cols=177 Identities=27% Similarity=0.456 Sum_probs=138.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc--ccCCCceEEEecccccc-----ccC--CCCE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--HFRNPRFELIRHDVVEP-----ILL--EVDQ 183 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~--~~~~~~v~~~~~Dl~~~-----~~~--~~D~ 183 (309)
..++|+||||||+||||++|+++|+++|++|++++|........... ......+.++.+|+.++ ++. ++|+
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~ 87 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS 87 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 45678999999999999999999999999999999865432211111 01134567888998875 344 7999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCC----CCCCCCCCCCCCCCCCCCCH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL----EHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~----~~~~~E~~~~~~~~~~~~~~ 258 (309)
||||||.........++...+++|+.|+.+++++|++.++ +||++||.++|+... ..+.+|+ .+..+.+.
T Consensus 88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~ 162 (699)
T 1z45_A 88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNP 162 (699)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSH
T ss_pred EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCCh
Confidence 9999986433223345667899999999999999998886 899999999998643 2456666 46667789
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCcEEEEEeCceeCCCC
Q 021681 259 YDEGKRTAETLTMDYHRG--AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~--~gi~~~ivRp~~V~Gp~~ 294 (309)
|+.+|+++|.+++.++.+ .+++++++||++||||+.
T Consensus 163 Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~ 200 (699)
T 1z45_A 163 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP 200 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCc
Confidence 999999999999998876 689999999999999863
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=188.63 Aligned_cols=154 Identities=19% Similarity=0.129 Sum_probs=125.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
++|+|||||| ||||++|+++|+++|++|++++|....... +....++++.+|+.+..+.++|+|||+|+.....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEA-----IRASGAEPLLWPGEEPSLDGVTHLLISTAPDSGG 77 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHH-----HHHTTEEEEESSSSCCCCTTCCEEEECCCCBTTB
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhh-----HhhCCCeEEEecccccccCCCCEEEECCCccccc
Confidence 4579999998 999999999999999999999986432211 1124688888998775578899999999854321
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHH--cCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKR--VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (309)
+ ..+.++++++++ .++ +||++||..+|+.....+++|+ ++..|.+.|+.+|+.+|++++
T Consensus 78 ----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~ 139 (286)
T 3ius_A 78 ----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAARGRWRVMAEQQWQ 139 (286)
T ss_dssp ----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred ----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHHHH
Confidence 1 125788999988 555 8999999999998887788888 677788999999999999998
Q ss_pred HHHHhcCCcEEEEEeCceeCCCCC
Q 021681 272 DYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 272 ~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.+ .+++++++||+++|||+..
T Consensus 140 ~~---~~~~~~ilRp~~v~G~~~~ 160 (286)
T 3ius_A 140 AV---PNLPLHVFRLAGIYGPGRG 160 (286)
T ss_dssp HS---TTCCEEEEEECEEEBTTBS
T ss_pred hh---cCCCEEEEeccceECCCch
Confidence 86 6899999999999999753
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=184.47 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=122.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc---ccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~---~~~~~D~Vih~A~~~~~ 193 (309)
|+|||||||||||++++++|+++|++|++++|+...... +....++++.+|+.++ .+.++|+||||||....
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD-----RLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----HTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc-----ccCCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 579999999999999999999999999999986433221 1234678899999876 56789999999986411
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCC-C--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE-H--PQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~-~--~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
. ....+|+.++.+++++|++.+.++|++||.+++..... . +.+|. ....+.+.|+.+|..+|.+
T Consensus 76 ~-------~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~sK~~~e~~- 142 (224)
T 3h2s_A 76 S-------GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWYDGALYQYYEY- 142 (224)
T ss_dssp S-------SCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTHHHHHHHHHHH-
T ss_pred c-------chhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhhHHHHHHHHHH-
Confidence 1 12368999999999999998889999999765543222 1 23333 2233467899999999954
Q ss_pred HHHHHhcCCcEEEEEeCceeCCCC
Q 021681 271 MDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 271 ~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
..+.++.+++++++||+.+|||+.
T Consensus 143 ~~~~~~~~i~~~ivrp~~v~g~~~ 166 (224)
T 3h2s_A 143 QFLQMNANVNWIGISPSEAFPSGP 166 (224)
T ss_dssp HHHTTCTTSCEEEEEECSBCCCCC
T ss_pred HHHHhcCCCcEEEEcCccccCCCc
Confidence 555556799999999999999854
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=191.68 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=133.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC-----CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC---CC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG-----DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE---VD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g-----~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~---~D 182 (309)
+|+||||||+||||++|+++|+++| ++|++++|...... .....++++.+|+.+. .+.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 4789999999999999999999999 99999998654332 1234678889999775 4556 99
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc--CC-cEE-------EEeccccccCC--CCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--GA-KFL-------LTSTSEVYGDP--LEHPQKETYWGNV 250 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~-r~v-------~iSS~~vy~~~--~~~~~~E~~~~~~ 250 (309)
+|||+||... .++...+++|+.|+.+++++|++. ++ ++| |+||..+||.. ...+++|+.
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~---- 145 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDL---- 145 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTS----
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccc----
Confidence 9999998542 467889999999999999999987 55 776 79999999875 345677773
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHhcC-CcEEEEEeCceeCCCCCCCCCcHHHH
Q 021681 251 NPIGE-RSCYDEGKRTAETLTMDYHRGAG-VEVRIARIFNTYGPRMCLDDGRVVSN 304 (309)
Q Consensus 251 ~~~~~-~~~Y~~sK~~~E~~v~~~a~~~g-i~~~ivRp~~V~Gp~~~~~~~~~i~~ 304 (309)
+..+ .+.| +.+|.+++.++.+++ ++++++||++||||+.......+++.
T Consensus 146 -~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~ 196 (364)
T 2v6g_A 146 -PRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTL 196 (364)
T ss_dssp -CCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHH
T ss_pred -cCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHH
Confidence 3322 4678 458999998887777 99999999999999875333444554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=182.51 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=122.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccc-c-----ccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-P-----ILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-~-----~~~~~D~Vih~A~~ 190 (309)
|+||||||+|+||++++++|+++|++|++++|........ ..++++.+|+.+ + .+.++|+||||||.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-------TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-------CCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 5899999999999999999999999999999875433221 578899999988 4 56789999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
... ..+++|+.++.+++++|++.+. +||++||..+++.. +..| .+..+.+.|+.+|.++|.+
T Consensus 74 ~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK~~~e~~ 136 (219)
T 3dqp_A 74 GGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAKHFADLY 136 (219)
T ss_dssp TTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHHHHHHHH
T ss_pred CCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHHHHHHHH
Confidence 431 2556899999999999999886 89999998777532 2222 1334567899999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
++ ...+++++++||+.+||+..
T Consensus 137 ~~---~~~~i~~~ilrp~~v~g~~~ 158 (219)
T 3dqp_A 137 LT---KETNLDYTIIQPGALTEEEA 158 (219)
T ss_dssp HH---HSCCCEEEEEEECSEECSCC
T ss_pred HH---hccCCcEEEEeCceEecCCC
Confidence 86 46799999999999999853
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=202.35 Aligned_cols=174 Identities=22% Similarity=0.194 Sum_probs=131.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc------cccc-------cccCCCceEEEecccccc----c
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK------DNLV-------HHFRNPRFELIRHDVVEP----I 177 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~------~~~~-------~~~~~~~v~~~~~Dl~~~----~ 177 (309)
.+|+|||||||||||++|+++|++.|++|++++|...... +.+. ......++.++.+|+.++ .
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 228 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVL 228 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCCC
Confidence 4689999999999999999999999999999998754211 0000 001235789999999883 3
Q ss_pred cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC-----CCCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD-----PLEHPQKETYWGNVNP 252 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~-----~~~~~~~E~~~~~~~~ 252 (309)
..++|+||||||.. .+..++...+++|+.|+.+++++|++.+.++||+||.++ |. ....++.|+.+. .+
T Consensus 229 ~~~~D~Vih~Aa~~---~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~--~~ 302 (508)
T 4f6l_B 229 PENMDTIIHAGART---DHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--KG 302 (508)
T ss_dssp SSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSC--SS
T ss_pred ccCCCEEEECCcee---cCCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCccccccccc--cc
Confidence 45799999999754 344566778899999999999999985559999999998 43 234466666432 12
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
..+.+.|+.+|+++|.+++.++ +.|++++++||++||||...
T Consensus 303 ~~~~~~Y~~sK~~~E~~~~~~~-~~gi~~~ilRp~~v~G~~~~ 344 (508)
T 4f6l_B 303 QLLTSPYTRSKFYSELKVLEAV-NNGLDGRIVRVGNLTSPYNG 344 (508)
T ss_dssp BCCCSHHHHHHHHHHHHHHHHH-HTTCEEEEEEECCEESCSSS
T ss_pred ccCCCcHHHHHHHHHHHHHHHH-HcCCCEEEEecceeccCCCC
Confidence 3467899999999999999975 47999999999999999753
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=199.90 Aligned_cols=167 Identities=22% Similarity=0.168 Sum_probs=128.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccc---cccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---VEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl---~~~~~~~~D~Vih~A~~~~ 192 (309)
+|+||||||+||||++|+++|+++|++|++++|....... +..|+ ....+.++|+|||||+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~-------------v~~d~~~~~~~~l~~~D~Vih~A~~~~ 213 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK-------------RFWDPLNPASDLLDGADVLVHLAGEPI 213 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC-------------EECCTTSCCTTTTTTCSEEEECCCC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc-------------eeecccchhHHhcCCCCEEEECCCCcc
Confidence 7899999999999999999999999999999987543211 22333 3446778999999998654
Q ss_pred CCC-CcCChhHHHHHHHHHHHHHHHH-HHHcCC-cEEEEecccccc-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 193 PVH-YKYNPVKTIKTNVMGTLNMLGL-AKRVGA-KFLLTSTSEVYG-DPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 193 ~~~-~~~~~~~~~~~Nv~gt~~ll~~-a~~~~~-r~v~iSS~~vy~-~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
... ...++...+++|+.|+.+|+++ +++.++ +||++||.++|+ .....+++|+. +. +.+.|+.+|...|.
T Consensus 214 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~-----~~-~~~~y~~~~~~~E~ 287 (516)
T 3oh8_A 214 FGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEES-----ES-GDDFLAEVCRDWEH 287 (516)
T ss_dssp ---CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTS-----CC-CSSHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCC-----CC-CcChHHHHHHHHHH
Confidence 332 2345677899999999999999 555665 899999999998 55556777773 33 66899999999998
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
++.. +...|++++++||++||||+. .+++.|+.
T Consensus 288 ~~~~-~~~~gi~~~ilRp~~v~Gp~~-----~~~~~~~~ 320 (516)
T 3oh8_A 288 ATAP-ASDAGKRVAFIRTGVALSGRG-----GMLPLLKT 320 (516)
T ss_dssp TTHH-HHHTTCEEEEEEECEEEBTTB-----SHHHHHHH
T ss_pred HHHH-HHhCCCCEEEEEeeEEECCCC-----ChHHHHHH
Confidence 8765 456799999999999999862 46666654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=180.49 Aligned_cols=165 Identities=19% Similarity=0.112 Sum_probs=131.3
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|++++ .+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFG 84 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3467899999999999999999999999999999998755433322222 34677888999876 224
Q ss_pred CCCEEEEcccCCCCCC------CcCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH------YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+|++|||||...... ..++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------- 151 (271)
T 3tzq_B 85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA------------- 151 (271)
T ss_dssp CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------------
T ss_pred CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC-------------
Confidence 7999999999753311 22356789999999999999998 44554 899999987762
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|..
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~ 197 (271)
T 3tzq_B 152 ---AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRL 197 (271)
T ss_dssp ---BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTT
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccc
Confidence 3334578999999999999999987 689999999999999865
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=195.26 Aligned_cols=149 Identities=28% Similarity=0.351 Sum_probs=124.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~ 195 (309)
|+|||||||||||++|+++|+++|+ +|+++++. .+.+..+.++.++|+|||+||....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------~d~~~l~~~~~~~d~Vih~a~~~~~-- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELESALLKADFIVHLAGVNRP-- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------CCHHHHHHHHHHCSEEEECCCSBCT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------CCHHHHHHHhccCCEEEECCcCCCC--
Confidence 6899999999999999999999999 99988763 1122334456679999999986543
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 021681 196 YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY 273 (309)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (309)
.++...+++|+.++.+++++|++.+. ++|++||..+|+ .+.|+.+|+++|.+++.+
T Consensus 60 --~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~~ 117 (369)
T 3st7_A 60 --EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLREY 117 (369)
T ss_dssp --TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHHH
Confidence 34556677999999999999999884 799999999985 368999999999999999
Q ss_pred HHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 274 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 274 a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
+++.+++++++||+++|||+.....+.+++.|+++
T Consensus 118 ~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~ 152 (369)
T 3st7_A 118 AEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYK 152 (369)
T ss_dssp HHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHH
T ss_pred HHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHH
Confidence 98899999999999999998755556788887764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=178.77 Aligned_cols=157 Identities=14% Similarity=0.203 Sum_probs=114.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc---ccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~---~~~~~D~Vih~A~~~~~ 193 (309)
|+||||||+||||++++++|+++|++|++++|+...... . . ..++++.+|+.++ .+.++|+||||||....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~-~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ----T-H-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH----H-C-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh----c-c-CCCeEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 589999999999999999999999999999986433221 1 1 4678899999876 57789999999986211
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccccc-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG-DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~-~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (309)
..+.|+.++.+++++|++.+. ++|++||..+|. .....+..|+ .+..+.+.|+.+|...|.+ .
T Consensus 75 ---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k~~~e~~-~ 139 (221)
T 3ew7_A 75 ---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTARAQAKQL-E 139 (221)
T ss_dssp ---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-H
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHHHHHHHH-H
Confidence 134799999999999999865 999999976654 3333344444 4555667899999999997 3
Q ss_pred HHHH-hcCCcEEEEEeCceeCCCC
Q 021681 272 DYHR-GAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 272 ~~a~-~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+.. ..+++++++||+.+|||+.
T Consensus 140 ~~~~~~~gi~~~ivrp~~v~g~~~ 163 (221)
T 3ew7_A 140 HLKSHQAEFSWTYISPSAMFEPGE 163 (221)
T ss_dssp HHHTTTTTSCEEEEECSSCCCCC-
T ss_pred HHHhhccCccEEEEeCcceecCCC
Confidence 3433 6799999999999999843
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=181.92 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=126.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
.++|+||||||+|+||++++++|+++|++|++++|+.....+.... ....+.++.+|+++.. +.++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA--YPDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH--CTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--ccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999999999865433322211 1346888999998761 2379
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHH----HHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGL----AKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~----a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||......+ .+++...+++|+.|+.++++. +++.+. +||++||...+ .+
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~----------------~~ 144 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQ----------------LS 144 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------CC
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc----------------CC
Confidence 999999997543222 235677899999996555555 455555 89999998766 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+.+.|+.||++.|.+++.++.+ +|+++++++||.|++|..
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 189 (281)
T 3m1a_A 145 FAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLF 189 (281)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccc
Confidence 445578999999999999999887 699999999999988753
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=182.40 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=122.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCC--CCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~--~D~Vih~A~ 189 (309)
|+||||||+||||++++++|++ |++|++++|..... .. +.+|+.++ .+.+ +|+||||||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 66 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAA 66 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence 5799999999999999999994 89999999865311 11 67788765 3443 999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.........++...+++|+.++.+++++|++.++++|++||..+|+.... +++|+ ++..+.+.|+.+|.++|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~-----~~~~~~~~Y~~sK~~~e~~ 140 (273)
T 2ggs_A 67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEE-----DIPNPINYYGLSKLLGETF 140 (273)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 64432233578889999999999999999998889999999999976543 67777 4566778999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
++. ++++++||+.|||+
T Consensus 141 ~~~------~~~~~iR~~~v~G~ 157 (273)
T 2ggs_A 141 ALQ------DDSLIIRTSGIFRN 157 (273)
T ss_dssp HCC------TTCEEEEECCCBSS
T ss_pred HhC------CCeEEEeccccccc
Confidence 765 67899999999983
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=179.74 Aligned_cols=163 Identities=18% Similarity=0.113 Sum_probs=128.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|++++ .+.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 357889999999999999999999999999999998644332222221 24578889999876 1237
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc------CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~------~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||....... .++++..+++|+.|+.++++++.+. +.++|++||...+.
T Consensus 83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 147 (259)
T 4e6p_A 83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR--------------- 147 (259)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc---------------
Confidence 9999999997544332 2356788999999999999987543 34899999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |+++++++||.|++|.
T Consensus 148 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~ 192 (259)
T 4e6p_A 148 -GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEH 192 (259)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTT
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccch
Confidence 23344789999999999999998774 8999999999999985
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=180.30 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=123.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCC-
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH- 195 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~- 195 (309)
|+|||||||||||++|+++|+++|++|+++.|+.... ++...++....+.++|.|||+|+......
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------------~~~~~~~~~~~l~~~d~vihla~~~i~~~~ 67 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------------RITWDELAASGLPSCDAAVNLAGENILNPL 67 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------EEEHHHHHHHCCCSCSEEEECCCCCSSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------------eeecchhhHhhccCCCEEEEeccCcccchh
Confidence 6899999999999999999999999999998853211 12222334456788999999997422111
Q ss_pred ---CcCChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 196 ---YKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 196 ---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
........++.|+.+|.+|++++++.+. ++|+.||..+|+.....+.+|+ ++..+.+.|+..|...|..
T Consensus 68 ~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~~~~~~~~e~~ 142 (298)
T 4b4o_A 68 RRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFFSNLVTKWEAA 142 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchhHHHHHHHHHH
Confidence 1123456788999999999999998875 4889999999999888888888 6777788899888887765
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
.. ....+++++++||+.||||+
T Consensus 143 ~~--~~~~~~~~~~~r~~~v~g~~ 164 (298)
T 4b4o_A 143 AR--LPGDSTRQVVVRSGVVLGRG 164 (298)
T ss_dssp HC--CSSSSSEEEEEEECEEECTT
T ss_pred HH--hhccCCceeeeeeeeEEcCC
Confidence 32 34568999999999999985
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=179.71 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=130.3
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------ 176 (309)
...+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ....++..+.+|++++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE 84 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999998654332222111 1225788899999876
Q ss_pred ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+.++|++|||||......+. ++++..+++|+.|+.++++++.+. + .++|++||...+.
T Consensus 85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------ 152 (262)
T 3pk0_A 85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI------------ 152 (262)
T ss_dssp HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT------------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc------------
Confidence 124799999999975433322 356788999999999999987654 4 4899999976431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|.
T Consensus 153 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~ 198 (262)
T 3pk0_A 153 ---TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEG 198 (262)
T ss_dssp ---BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred ---CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcc
Confidence 12234478999999999999999987 58999999999999974
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=175.36 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=129.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
+..++|+||||||+|+||++++++|+++|++|++++|+..... ...+..+.+|++++. +.
T Consensus 24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 95 (260)
T 3un1_A 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERFG 95 (260)
T ss_dssp HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHCC
Confidence 3467889999999999999999999999999999998644322 236788999998761 23
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||||......+ .++++..+++|+.|+.++++++ ++.+. ++|++||..++..
T Consensus 96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------------- 161 (260)
T 3un1_A 96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP-------------- 161 (260)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC--------------
Confidence 79999999997544332 2356788999999999999987 34444 8999999876532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.||++.+.+++.++.+. |+++++++||.|++|..
T Consensus 162 ~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~ 208 (260)
T 3un1_A 162 MVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMH 208 (260)
T ss_dssp BTTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCC
Confidence 122344789999999999999999886 89999999999999854
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=176.36 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=125.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+.++.+|++++ .+..
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999998765443322222 24677889999876 1247
Q ss_pred CCEEEEcccCCCCCCC--------cCChhHHHHHHHHHHHHHHHHHHHc----------C-CcEEEEeccccccCCCCCC
Q 021681 181 VDQIYHLACPASPVHY--------KYNPVKTIKTNVMGTLNMLGLAKRV----------G-AKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~----------~-~r~v~iSS~~vy~~~~~~~ 241 (309)
+|++|||||....... .+++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~------ 155 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD------ 155 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH------
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc------
Confidence 9999999997543322 2457788999999999999998653 2 3799999987763
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.||++.+.+++.++.+ +|+++++++||.|.+|..
T Consensus 156 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 201 (257)
T 3tpc_A 156 ----------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMM 201 (257)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--
T ss_pred ----------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhh
Confidence 2234578999999999999999877 689999999999999853
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=175.75 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc---CCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL---LEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~---~~~D~Vi 185 (309)
+++|+|+||||+|+||++++++|+++|++|++++|+.....+...+ ...++++.+|+.++ .+ ..+|+||
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLLV 81 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---ccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence 5678999999999999999999999999999999864322211111 12456678898775 22 3589999
Q ss_pred EcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
||||......+ .+++...+++|+.|+.++++++.+. + .+||++||..+|.. ..+
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~ 145 (244)
T 1cyd_A 82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT----------------FPN 145 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------------CTT
T ss_pred ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC----------------CCC
Confidence 99996543222 2346778999999999999987653 4 48999999887742 223
Q ss_pred CCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...|+.+|++.|.+++.++.+ .+++++++|||.++||.
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~ 186 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM 186 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence 468999999999999999877 58999999999999974
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=174.04 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=121.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
++|+|+||||+|+||++++++|+++|+ +|++++|+........ ...+.++.+|+.++ .+.++|+||||
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 91 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFCC 91 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence 467999999999999999999999999 9999998754332211 13567788888775 45689999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
||.... ..++...+++|+.++.++++++++.+. +||++||..+|+. +.+.|+.+|.++
T Consensus 92 ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~~~ 150 (242)
T 2bka_A 92 LGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGEV 150 (242)
T ss_dssp CCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHH
T ss_pred CCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHHHH
Confidence 985321 224567889999999999999999886 8999999988742 236799999999
Q ss_pred HHHHHHHHHhcCC-cEEEEEeCceeCCCC
Q 021681 267 ETLTMDYHRGAGV-EVRIARIFNTYGPRM 294 (309)
Q Consensus 267 E~~v~~~a~~~gi-~~~ivRp~~V~Gp~~ 294 (309)
|.+++. .++ +++++|||.+|||..
T Consensus 151 e~~~~~----~~~~~~~~vrpg~v~~~~~ 175 (242)
T 2bka_A 151 EAKVEE----LKFDRYSVFRPGVLLCDRQ 175 (242)
T ss_dssp HHHHHT----TCCSEEEEEECCEEECTTG
T ss_pred HHHHHh----cCCCCeEEEcCceecCCCC
Confidence 999765 467 699999999999964
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=177.11 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC--CCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~------------~ 178 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+... ..++.++.+|++++. +
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999864322211111100 346788899998761 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|+||||||......+ .+++...+++|+.|+.++++++. +.+. ++|++||...+..
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 150 (263)
T 3ai3_A 84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP------------- 150 (263)
T ss_dssp SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC-------------
Confidence 379999999997543322 23567889999999999998874 3444 8999999887732
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|.+.+.+++.++.+ +|+++++++||.|++|.
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 194 (263)
T 3ai3_A 151 ---LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPD 194 (263)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 233468999999999999999877 58999999999999974
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=175.58 Aligned_cols=164 Identities=17% Similarity=0.079 Sum_probs=127.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++|++|||||+|+||++++++|+++|++|+++++......+...+.+ ...++..+.+|++++ .+.+
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999998875432222221111 235678899999876 1247
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||....... .++++..+++|+.|+.++++++ ++.+. ++|++||...+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV---------------- 146 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------------
Confidence 9999999997543332 2356789999999999999998 44444 899999976652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.||++.+.+++.++.+ +|++++.++||.|++|..
T Consensus 147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 192 (246)
T 3osu_A 147 GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMT 192 (246)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcc
Confidence 2234478999999999999999875 589999999999999854
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=176.76 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=128.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..+++|+|+||||+|+||++++++|+++|++|++++|..........+.-....+.++.+|++++. +.
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 91 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 91 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999998864322211111111236888999998761 23
Q ss_pred CCCEEEEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
++|+||||||..... .+ .+++...+++|+.|+.++++++.+. +. ++|++||..+|...
T Consensus 92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------- 160 (278)
T 2bgk_A 92 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG----------- 160 (278)
T ss_dssp CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-----------
T ss_pred CCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-----------
Confidence 799999999965321 11 1346788999999999999988653 43 89999999887421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|++.|.+++.++.+ .|++++++|||.|+||..
T Consensus 161 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 205 (278)
T 2bgk_A 161 ----EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLL 205 (278)
T ss_dssp ----TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCC
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhh
Confidence 113468999999999999999876 589999999999999864
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=171.12 Aligned_cols=147 Identities=20% Similarity=0.265 Sum_probs=120.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEeccccccc-cCC--CCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-LLE--VDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-~~~--~D~Vih~A~ 189 (309)
++|+|+||||+|+||++++++|+++|+ +|++++|+... ....++++.+|+.++. +.. +|+||||||
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~ 74 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG 74 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECee
Confidence 467999999999999999999999998 99999986543 1245677788887652 111 899999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
.... ...++...+++|+.++.+++++|++.+. ++|++||..+|+. +.+.|+.+|.++|.
T Consensus 75 ~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e~ 134 (215)
T 2a35_A 75 TTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQ 134 (215)
T ss_dssp CCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHH
T ss_pred eccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHHH
Confidence 5321 2356788899999999999999999887 7999999998842 23689999999999
Q ss_pred HHHHHHHhcCCc-EEEEEeCceeCCCC
Q 021681 269 LTMDYHRGAGVE-VRIARIFNTYGPRM 294 (309)
Q Consensus 269 ~v~~~a~~~gi~-~~ivRp~~V~Gp~~ 294 (309)
+++. .+++ ++++||+.+|||..
T Consensus 135 ~~~~----~~~~~~~~vrp~~v~g~~~ 157 (215)
T 2a35_A 135 ALQE----QGWPQLTIARPSLLFGPRE 157 (215)
T ss_dssp HHTT----SCCSEEEEEECCSEESTTS
T ss_pred HHHH----cCCCeEEEEeCceeeCCCC
Confidence 9765 4899 99999999999975
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=179.76 Aligned_cols=168 Identities=17% Similarity=0.087 Sum_probs=130.6
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------ 176 (309)
...+++|+||||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999987554332222211 124788899999886
Q ss_pred ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+..+|++|||||......+ .++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~------------ 183 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV------------ 183 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc------------
Confidence 23479999999997544332 23567889999999999999873 444 4999999976431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.||++.+.+++.++.+ +|+++++++||.|++|.
T Consensus 184 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 229 (293)
T 3rih_A 184 ---TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEG 229 (293)
T ss_dssp ---BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcc
Confidence 11223478999999999999999877 48999999999999974
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=175.34 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=128.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc-----------cC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI-----------LL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~-----------~~ 179 (309)
..+++|++|||||+|+||++++++|+++|++|+++++... ..+...+. .....+..+.+|+.+.. +.
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999999986422 11111111 12356788899998761 24
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||||........ ++++..+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------------- 170 (273)
T 3uf0_A 106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ--------------- 170 (273)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC---------------
Confidence 799999999976543322 3567899999999999999873 3444 899999987762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|++++.++||.|++|.
T Consensus 171 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 215 (273)
T 3uf0_A 171 -GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTAN 215 (273)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCc
Confidence 3334578999999999999999887 58999999999999874
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=179.14 Aligned_cols=167 Identities=17% Similarity=0.101 Sum_probs=128.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc----CCCceEEEecccccc----------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP---------- 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~----~~~~v~~~~~Dl~~~---------- 176 (309)
.+.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|++++
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999999999999999986543322211111 112688899999876
Q ss_pred --ccCCCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCC
Q 021681 177 --ILLEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 177 --~~~~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E 244 (309)
.+..+|++|||||..... . ..++++..+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 156 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN--------- 156 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC---------
Confidence 124799999999963221 1 12356788999999999999987543 3 3899999988762
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. |+++++++||.|++|.
T Consensus 157 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~ 201 (281)
T 3svt_A 157 -------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDL 201 (281)
T ss_dssp -------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcc
Confidence 33345789999999999999998774 6999999999999874
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=174.51 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=126.1
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------ 176 (309)
++...+++|+||||||+|+||++++++|+++|++|++++++..... .....+.+|++++
T Consensus 7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV---------NVSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT---------TSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc---------CceeEEEecCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999999999999999998643321 2456778898876
Q ss_pred ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+..+|++|||||........ +++...+++|+.|+.++++++.+ .+. +||++||...|.
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------ 145 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA------------ 145 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc------------
Confidence 224799999999975443322 24677899999999999998654 343 899999988773
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. +++++.++||.|.+|.
T Consensus 146 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~ 189 (269)
T 3vtz_A 146 ----ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPM 189 (269)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHH
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcc
Confidence 33345789999999999999999886 8999999999999863
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=173.25 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+........... ....++.++.+|++++. +.
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 457889999999999999999999999999999998643222111111 01346888999998761 23
Q ss_pred CCCEEEEcccCCC-CCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPAS-PVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|+||||||... ..... +++...+++|+.|+.++++++.+ .+. ++|++||...+..
T Consensus 90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------- 156 (260)
T 3awd_A 90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV------------- 156 (260)
T ss_dssp CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc-------------
Confidence 7999999999654 22221 24577899999999999998764 344 8999999876532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.+|++.|.+++.++.+ +|++++++|||.|++|..
T Consensus 157 -~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~ 203 (260)
T 3awd_A 157 -NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLT 203 (260)
T ss_dssp -CSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTT
T ss_pred -CCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchh
Confidence 12223478999999999999999877 699999999999999864
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=174.81 Aligned_cols=164 Identities=14% Similarity=0.036 Sum_probs=126.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------c-
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L- 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~- 178 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|++++. +
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999986433221111110 1346788899998761 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|++|||||....... .+++...+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 151 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------------- 151 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------------
Confidence 579999999997543222 23567889999999999999884 3444 899999987662
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.+.+|
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 195 (260)
T 2ae2_A 152 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 195 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSH
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCc
Confidence 22334689999999999999998774 899999999999886
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=175.42 Aligned_cols=165 Identities=17% Similarity=0.066 Sum_probs=125.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--------CCCceEEEeccccccc--------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--------RNPRFELIRHDVVEPI-------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--------~~~~v~~~~~Dl~~~~-------- 177 (309)
+++|+|+||||+|+||++++++|+++|++|++++|+.....+...... ....+.++.+|+.++.
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ 84 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999986443221111110 0146778899998761
Q ss_pred ----cCCC-CEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCC
Q 021681 178 ----LLEV-DQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 178 ----~~~~-D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~ 242 (309)
+..+ |+||||||...... ..+++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------- 157 (264)
T 2pd6_A 85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV------- 157 (264)
T ss_dssp HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-------
T ss_pred HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc-------
Confidence 2345 99999999754322 22356788999999999999987653 3 4899999986542
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|.+.+.+++.++.+ .|++++++|||.+++|..
T Consensus 158 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 203 (264)
T 2pd6_A 158 ---------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMT 203 (264)
T ss_dssp ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-
T ss_pred ---------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccch
Confidence 2223468999999999999999877 689999999999999864
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-22 Score=172.30 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=125.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc---CCCCEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL---LEVDQI 184 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~---~~~D~V 184 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+... .. ...+++.+|+.++ .+ .++|+|
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR-EC--PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HS--TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hc--CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 3567899999999999999999999999999999986432221111 11 2456678898776 22 358999
Q ss_pred EEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||......+ .+++...+++|+.++.++++++.+. + .++|++||...+. +..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 144 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc----------------CCC
Confidence 999996543222 2346788999999999999987653 4 4899999987763 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+...|+.+|++.|.+++.++.+ .++++++++||.|+++.
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~ 186 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSM 186 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTT
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccc
Confidence 4578999999999999999876 48999999999999985
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=169.25 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.... . ..+..+.+|+.++. +.++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-----~----~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 75 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-----Q----YPFATEVMDVADAAQVAQVCQRLLAETERL 75 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-----C----CSSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-----c----CCceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999999999999999999999999999864321 1 12677888987761 2479
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+ .++++..+++|+.|+.++++++ ++.+ .++|++||...+. +
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 139 (250)
T 2fwm_X 76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT----------------P 139 (250)
T ss_dssp CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------C
Confidence 999999997543322 2357889999999999999988 3444 4999999988762 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.+++|..
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 184 (250)
T 2fwm_X 140 RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQ 184 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccc
Confidence 334578999999999999999877 489999999999999853
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=171.95 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC-CCcccccccccCCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~-~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++|+. ....+.+.. ...++..+.+|++++. +.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5678999999999999999999999999999999865 222221111 1246788899998761 357
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------------- 146 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc----------------
Confidence 9999999997543322 2356788999999999988884 44454 899999988773
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 147 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 191 (249)
T 2ew8_A 147 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTAT 191 (249)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCcc
Confidence 2234478999999999999999877 48999999999999875
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=174.11 Aligned_cols=163 Identities=14% Similarity=0.014 Sum_probs=125.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-------CC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-------LE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-------~~ 180 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+.. ..+. ..+..+.+|++++ .+ .+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~ 86 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVV-AGLE-NGGFAVEVDVTKRASVDAAMQKAIDALGG 86 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTCT-TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHHh-cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999999999998643322211 1111 1567788999876 12 37
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+||||||....... .+++...+++|+.|+.++++++.+. + .++|++||...+.
T Consensus 87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 151 (263)
T 3ak4_A 87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV--------------- 151 (263)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---------------
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc---------------
Confidence 9999999997543322 2256788999999999999987543 3 5899999987652
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|++|.
T Consensus 152 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 196 (263)
T 3ak4_A 152 -GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAM 196 (263)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChh
Confidence 22234689999999999999998774 8999999999999874
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=175.40 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc-----cc-------C
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP-----IL-------L 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~-----~~-------~ 179 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.........+. .....+.++.+|+.++ .+ .
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 357789999999999999999999999999999998643322111111 0134677889999875 12 3
Q ss_pred CCCEEEEcccCCCCCCC---cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY---KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
++|+||||||......+ .+++...+++|+.|+.++++++. +.+. +||++||..++.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 151 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------
Confidence 79999999997543322 23467889999999999999875 3444 899999988763
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.|.+++.++.+. +++++++|||.+++|.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~ 196 (255)
T 1fmc_A 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 196 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchh
Confidence 23345789999999999999998764 8999999999999974
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=173.66 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=126.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
..++|++|||||+|+||++++++|+++|++|++++|+.....+ .....+..+.+|++++ .+.+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 87 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA-----LNLPNTLCAQVDVTDKYTFDTAITRAEKIYGP 87 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHT-----TCCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-----hhcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 4577899999999999999999999999999999985432221 1233678889999876 1247
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------------- 151 (266)
T 3p19_A 88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK---------------- 151 (266)
T ss_dssp EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------------
Confidence 99999999975443322 3467889999999999888764 344 4999999987762
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|.+|..
T Consensus 152 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~ 197 (266)
T 3p19_A 152 TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELL 197 (266)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGG
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchh
Confidence 3334578999999999999999877 489999999999999853
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=177.67 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=131.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~ 177 (309)
..+++|++|||||+|+||++++++|+++|++|++++++.....+...+.. ...++.++.+|+.++ .
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999987543222221111 235788899999876 1
Q ss_pred cCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+..+|++|||||...... ..++++..+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------------- 188 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE-------------- 188 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH--------------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC--------------
Confidence 247999999998654322 22357889999999999999999864 34899999988763
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|++|.
T Consensus 189 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~ 233 (291)
T 3ijr_A 189 --GNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233 (291)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTH
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCc
Confidence 22334689999999999999998774 8999999999999874
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=175.44 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc-----c-------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-----I-------L 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~-----~-------~ 178 (309)
+.+++|+||||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|+.++ . +
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999986432221111110 134678888999775 1 1
Q ss_pred -CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 -LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 -~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.++|+||||||....... .+++...+++|+.|+.++++++ ++.+ .++|++||..++.
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------- 156 (266)
T 1xq1_A 90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV------------- 156 (266)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc-------------
Confidence 579999999996543222 2356778999999999999988 3444 4899999987663
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |++++++|||.+++|..
T Consensus 157 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 202 (266)
T 1xq1_A 157 ---SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLA 202 (266)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchh
Confidence 22334789999999999999998774 89999999999999853
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-22 Score=176.95 Aligned_cols=165 Identities=14% Similarity=0.062 Sum_probs=127.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc---cCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~------------~ 177 (309)
.+++|++|||||+|+||++++++|+++|++|++++|......+..... .....+..+.+|++++ .
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988432222221111 1245788899999876 2
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+.++|++|||||......+ .+++...+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 168 (281)
T 3v2h_A 102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV------------- 168 (281)
T ss_dssp TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc-------------
Confidence 3479999999997544332 23567889999999999999873 3443 899999987662
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 169 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 213 (281)
T 3v2h_A 169 ---ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPL 213 (281)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcc
Confidence 23344689999999999999998774 8999999999999985
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=173.81 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=124.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-------CCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-------LEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-------~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+... .+. ..+..+.+|++++ .+ .++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA-ELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hhh-cCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999999986433221111 111 2477888999876 22 379
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+ .+++...+++|+.|+.++++++ ++.+. ++|++||...+. +
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 146 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA----------------G 146 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC----------------C
Confidence 999999997543322 2356788999999998777765 34444 899999988763 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|.+.+.+++.++.+ .|++++++|||.|++|..
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 191 (260)
T 1nff_A 147 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT 191 (260)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGG
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcc
Confidence 223468999999999999999877 589999999999999853
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=172.43 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=125.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----c-------cCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----I-------LLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-----~-------~~~~ 181 (309)
+|+++||||+|+||++++++|+++|++|++++|+.....+...+. ....++.++.+|++++ . +.++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI 81 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999998643322111111 0124678899999876 1 2379
Q ss_pred CEEEEcccCCCCCC---C----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVH---Y----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 182 D~Vih~A~~~~~~~---~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
|+||||||...... + .+++...+++|+.|+.++++.+. +.+. ++|++||...+.
T Consensus 82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 147 (250)
T 2cfc_A 82 DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV-------------- 147 (250)
T ss_dssp CEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc--------------
Confidence 99999999754322 1 23467889999999988877764 3354 899999987763
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|.+.+.+++.++.+. |++++++|||.|++|..
T Consensus 148 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~ 193 (250)
T 2cfc_A 148 --AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMT 193 (250)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTT
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCcc
Confidence 22334789999999999999998775 89999999999999864
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=173.94 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=119.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
++|+||||||+|+||++++++|+++ |++|++++|+...... + ...+.++.+|+.+. .+.++|+||||
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~-~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-I-----GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH-T-----TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh-c-----CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 4689999999999999999999999 8999999986432211 1 23456788888775 56789999999
Q ss_pred ccCCCCCC-------------CcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 188 A~~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
||...... ..+++...+++|+.++.++++++++.+. +||++||..++.. . .+.
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~-----~~~ 143 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------D-----HPL 143 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------T-----CGG
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------C-----Ccc
Confidence 98643211 1122345789999999999999999886 8999999887521 1 111
Q ss_pred CC--CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 254 GE--RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~--~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+ .+.|+.+|..+|.+++. .+++++++|||.+|||..
T Consensus 144 ~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~ 182 (253)
T 1xq6_A 144 NKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEG 182 (253)
T ss_dssp GGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCS
T ss_pred ccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCc
Confidence 11 13588899999998753 689999999999999864
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=174.71 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=129.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc--------ccccc---cc--cCCCceEEEecccccc--
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--------KDNLV---HH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~--------~~~~~---~~--~~~~~v~~~~~Dl~~~-- 176 (309)
..+++|++|||||+|+||++++++|+++|++|++++|+.... .+... .. .....+..+.+|++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 356789999999999999999999999999999999863321 11110 00 1235788899999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCC
Q 021681 177 ----------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDP 237 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~ 237 (309)
.+.++|++|||||......+ .++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 163 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS-- 163 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS--
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC--
Confidence 12479999999997543332 23567889999999999999863 334 3899999987762
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|..
T Consensus 164 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 209 (281)
T 3s55_A 164 --------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMT 209 (281)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTT
T ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccc
Confidence 3334578999999999999999986 489999999999999864
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=170.90 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=125.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------cCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--------~~~~D~Vi 185 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+. .+ ...+..+.+|++++. +.++|+||
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv 79 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL-EK---YPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG-GG---STTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-Hh---ccCceEEEeeCCCHHHHHHHHHHhCCCCEEE
Confidence 4678999999999999999999999999999999864332221 11 126788899998762 45799999
Q ss_pred EcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
||||......+ .++++..+++|+.|+.++++++.+ .+. ++|++||...+... ..+.
T Consensus 80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------~~~~ 144 (246)
T 2ag5_A 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG---------------VVNR 144 (246)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------------CTTB
T ss_pred ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC---------------CCCC
Confidence 99997543322 235678899999999999998753 344 89999998765210 1134
Q ss_pred CHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..|+.+|++.+.+++.++.+. |+++++++||.|++|.
T Consensus 145 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 184 (246)
T 2ag5_A 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS 184 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcc
Confidence 689999999999999998764 8999999999999974
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=171.06 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=125.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCC-cccccccccCCCceEEEecccccc-c------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-I------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-~------------~ 178 (309)
+++|+|+||||+|+||++++++|+++|++ |++++|+... ..+.+........+.++.+|++++ . +
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 56789999999999999999999999996 8888886431 111122222234678889999875 1 2
Q ss_pred CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.++|+||||||.. ..++++..+++|+.|+.++++++.+. +.++|++||...+.
T Consensus 83 g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 143 (254)
T 1sby_A 83 KTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN--------------- 143 (254)
T ss_dssp SCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc---------------
Confidence 3799999999863 24678899999999999999998642 23799999988763
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~ 188 (254)
T 1sby_A 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL 188 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcc
Confidence 2233468999999999999998876 68999999999999874
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=175.80 Aligned_cols=163 Identities=17% Similarity=0.067 Sum_probs=128.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|++++ .+.+
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998644332222211 34677889999876 2247
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .++++..+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 167 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV---------------- 167 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------------
Confidence 9999999997544332 235778899999999999998754 333 899999987652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|.
T Consensus 168 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 212 (277)
T 3gvc_A 168 AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM 212 (277)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCch
Confidence 3334578999999999999999877 58999999999999873
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=172.61 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+... .+ ...+..+.+|++++. +.++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR-EL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hh-CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999986432222111 11 235778889998761 2379
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+ .+++...+++|+.|+.++++.+ ++.+. +||++||...+. +
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 144 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------------G 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------------C
Confidence 999999997543222 2356788999999998666554 44554 899999987763 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.|++|
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 187 (254)
T 1hdc_A 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCc
Confidence 233478999999999999999876 4899999999999986
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-22 Score=175.87 Aligned_cols=165 Identities=13% Similarity=0.052 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----cCCCceEEEecccccc-----c-------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEP-----I------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~-----~------- 177 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|++++ .
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998643222111111 1124678889999876 1
Q ss_pred cCCCCEEEEcccCCCCCC--------CcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEecccc-ccCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEV-YGDPLEHPQKE 244 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~v-y~~~~~~~~~E 244 (309)
+.++|++|||||...... ..++++..+++|+.|+.++++++.+. +.++|++||... +.
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------- 154 (278)
T 1spx_A 84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH--------- 154 (278)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS---------
T ss_pred cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc---------
Confidence 237999999999654322 22346788999999999999988653 569999999876 52
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|..
T Consensus 155 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 200 (278)
T 1spx_A 155 -------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFG 200 (278)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccc
Confidence 2223468999999999999998866 589999999999999853
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=173.71 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=126.4
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|+.++ .+
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999999986433221111110 134678889999876 12
Q ss_pred -CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 -LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 -~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|++|||||......+ .++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 163 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------- 163 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC-------------
Confidence 579999999997543322 23567889999999999999874 334 4899999988773
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|++|..
T Consensus 164 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 209 (273)
T 1ae1_A 164 ---ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLV 209 (273)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchh
Confidence 22334789999999999999998774 89999999999999853
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=171.08 Aligned_cols=165 Identities=17% Similarity=0.038 Sum_probs=125.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCce-EEEeccccccc-----------cCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEPI-----------LLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v-~~~~~Dl~~~~-----------~~~ 180 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+... .+ ...+ ..+.+|+.+.. +.+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ-EL-GAAVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HH-GGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hh-cccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999999999999986432221111 11 1245 77888987761 257
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||........ +++...+++|+.|+.++++++. +.+. +||++||...+.. .
T Consensus 86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------------~ 151 (254)
T 2wsb_A 86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIV--------------N 151 (254)
T ss_dssp CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------C
T ss_pred CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccC--------------C
Confidence 99999999975443322 2457789999999888887763 3444 8999999877632 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+.+.|+.+|++.|.+++.++.+. |++++++|||.+++|.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~ 196 (254)
T 2wsb_A 152 RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEM 196 (254)
T ss_dssp SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchh
Confidence 22234789999999999999988774 8999999999999974
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=176.12 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=126.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------ 177 (309)
..+++|+|+||||+|+||++++++|+++|++|++++|+.....+...+.. ...++.++.+|+.+..
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999986433221111110 0346888999998761
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH-----cC-CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|+||||||....... .+++...+++|+.|+.++++++.+ .+ .++|++||..++.
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 169 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------ 169 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc------------
Confidence 2368999999996433221 235678899999999999888753 23 3899999987763
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.|.+++.++.+ .|++++++|||.|++|+
T Consensus 170 ----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~ 214 (302)
T 1w6u_A 170 ----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKG 214 (302)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcc
Confidence 2234578999999999999999877 68999999999999984
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=172.65 Aligned_cols=163 Identities=16% Similarity=0.081 Sum_probs=124.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec-CCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r-~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+||||||+|+||++++++|+++|++|++++| ...... ...+.+ ....+.++.+|+.++. +
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN-SVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999998 422111 111111 1346778899998751 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.++|+||||||....... .+++...+++|+.|+.++++++.+. + .++|++||...+
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~-------------- 149 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK-------------- 149 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc--------------
Confidence 379999999997543222 2346788999999999998886543 3 499999998765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+. |++++++|||.|++|.
T Consensus 150 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 195 (261)
T 1gee_A 150 --IPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 195 (261)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGG
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCch
Confidence 233445789999999999999988764 8999999999999984
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=174.66 Aligned_cols=164 Identities=18% Similarity=0.128 Sum_probs=128.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+ ....+..+.+|++++ .+.
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE--IGSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999999864332222211 134678889999876 124
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||||........ ++++..+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 165 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS--------------- 165 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------------
Confidence 799999999975443322 35678899999999999998753 333 899999988762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.||++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 166 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~ 210 (277)
T 4dqx_A 166 -AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPY 210 (277)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCch
Confidence 33445789999999999999998774 8999999999998863
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=174.60 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=129.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------ 177 (309)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++.
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999986443322211110 1357888999998862
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+.++|++|||||......+. ++++..+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 163 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------ 163 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc------------
Confidence 24799999999976543322 346788999999999999987542 3 4899999988762
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|.+|.
T Consensus 164 ----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 208 (266)
T 4egf_A 164 ----PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEM 208 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHH
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCch
Confidence 3334578999999999999999877 48999999999998863
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=176.53 Aligned_cols=176 Identities=14% Similarity=0.065 Sum_probs=134.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----c---cCCCCEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I---LLEVDQI 184 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~---~~~~D~V 184 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+..... ..++.++.+|+++. . +.++|++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 467899999999999999999999999999999998654332222221 35788899999876 1 2368999
Q ss_pred EEcccCCCCCC--CcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCC-CCCCCCCCCCCCCCCCCCCHHH
Q 021681 185 YHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 185 ih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~ 260 (309)
|||||+..+.. ..++++..+++|+.|+.++++++.+... |||++||...+.... .....+. ..+..+...|+
T Consensus 91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~Y~ 166 (291)
T 3rd5_A 91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLAYS 166 (291)
T ss_dssp EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHHHH
T ss_pred EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcchHH
Confidence 99999764332 3456789999999999999999988765 899999987764321 1111111 13445557899
Q ss_pred HHHHHHHHHHHHHHHhc---C--CcEEEEEeCceeCCCC
Q 021681 261 EGKRTAETLTMDYHRGA---G--VEVRIARIFNTYGPRM 294 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~---g--i~~~ivRp~~V~Gp~~ 294 (309)
.||++.+.+++.++.+. | ++++.++||.|.++-.
T Consensus 167 ~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~ 205 (291)
T 3rd5_A 167 QSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQ 205 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccc
Confidence 99999999999998774 4 9999999999988753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=171.03 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=127.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-------CC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-------LE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-------~~ 180 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+...+. ...+.++.+|+.++ .+ .+
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 467889999999999999999999999999999998754433222111 24678889999876 12 37
Q ss_pred CCEEEEcccCCCCCC----------CcCChhHHHHHHHHHHHHHHHHHHHc----------CC-cEEEEeccccccCCCC
Q 021681 181 VDQIYHLACPASPVH----------YKYNPVKTIKTNVMGTLNMLGLAKRV----------GA-KFLLTSTSEVYGDPLE 239 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~~~----------~~-r~v~iSS~~vy~~~~~ 239 (309)
+|+||||||...... ..+++...+++|+.++.++++++.+. +. ++|++||...+.
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---- 162 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---- 162 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH----
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC----
Confidence 999999999754322 12346788999999999999998754 43 899999987763
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 163 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 207 (265)
T 2o23_A 163 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 207 (265)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcc
Confidence 2233468999999999999998876 48999999999999874
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=173.80 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=120.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc----CCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL----LEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~----~~~D~Vih 186 (309)
||+||||||+||||++++++|+++|++|++++|+...... .+.+|+.+. .+ .++|+|||
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi~ 68 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLVC 68 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEEE
Confidence 3689999999999999999999999999999986433211 034566543 23 37999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCC-CCCCCCC-CCC--------C
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEH-PQKETYW-GNV--------N 251 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~-~~~E~~~-~~~--------~ 251 (309)
|||.... ..++...+++|+.|+.++++++.+. + .++|++||..+|+..... +..|..+ ... .
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T 2dkn_A 69 CAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQ 145 (255)
T ss_dssp CCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccc
Confidence 9986432 3568899999999999999987654 3 489999999988643211 1100000 000 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
...+.+.|+.+|++.|.+++.++.+ .|++++++|||.|+||.
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~ 190 (255)
T 2dkn_A 146 QGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL 190 (255)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh
Confidence 0124468999999999999998876 69999999999999974
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=173.52 Aligned_cols=166 Identities=16% Similarity=0.124 Sum_probs=129.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. ....++..+.+|++++ .+
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999999999999999999998654322211111 1235788899999876 12
Q ss_pred CCCCEEEEcccCCCCCCC---cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY---KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.++|++|||||......+ .++++..+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN--------------- 152 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC---------------
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC---------------
Confidence 479999999997654332 23567889999999999999874 3343 899999987762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 197 (256)
T 3gaf_A 153 -TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDA 197 (256)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCch
Confidence 33345789999999999999998774 8999999999998863
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=170.20 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=127.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+..
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR 83 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999986543322211111 234688899999876 1247
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH-----Hc-CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK-----RV-GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~-----~~-~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||....... .++++..+++|+.|+.++++++. +. +.++|++||...+.
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 148 (257)
T 3imf_A 84 IDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD--------------- 148 (257)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc---------------
Confidence 9999999996543322 23577889999999999999873 22 24899999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ +|++++.++||.|.+|..
T Consensus 149 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~ 195 (257)
T 3imf_A 149 -AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGG 195 (257)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcc
Confidence 3334568999999999999998854 489999999999998853
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=171.61 Aligned_cols=163 Identities=15% Similarity=0.049 Sum_probs=124.2
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+.+++|++|||||+|+||++++++|+++|++|++++|+.....+.+.. ..+.++.+|+.++ .+
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQ----AGAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHH----HTCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHh----cCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999875433222221 2367888999876 12
Q ss_pred CCCCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|++|||||.......+ +++...+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 98 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 162 (260)
T 3gem_A 98 SSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK--------------- 162 (260)
T ss_dssp SCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT---------------
T ss_pred CCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC---------------
Confidence 4799999999975443322 24667899999999999998754 23 4899999987762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+. +++++.++||.|.++.
T Consensus 163 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~ 206 (260)
T 3gem_A 163 -GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQP 206 (260)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--
T ss_pred -CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCC
Confidence 33345789999999999999998875 5999999999998874
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=161.00 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=116.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+|+|+||||+|+||++++++|+++|++|++++|+....... ....+.++.+|+.++ .++++|+|||+|+.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-----cCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 37999999999999999999999999999999865432211 134678889998875 56789999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
... .++. ++|+.++.++++++++.+. ++|++||..+|+..... + .+.+.|+.+|..+|.+
T Consensus 78 ~~~----~~~~---~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~-~~~~~y~~~K~~~e~~ 138 (206)
T 1hdo_A 78 RND----LSPT---TVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-----------P-PRLQAVTDDHIRMHKV 138 (206)
T ss_dssp TTC----CSCC---CHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-----------C-GGGHHHHHHHHHHHHH
T ss_pred CCC----CCcc---chHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-----------c-ccchhHHHHHHHHHHH
Confidence 433 1222 3899999999999999887 89999999998653211 1 1457899999999998
Q ss_pred HHHHHHhcCCcEEEEEeCcee
Q 021681 270 TMDYHRGAGVEVRIARIFNTY 290 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~ 290 (309)
++ +.+++++++||+.++
T Consensus 139 ~~----~~~i~~~~lrp~~~~ 155 (206)
T 1hdo_A 139 LR----ESGLKYVAVMPPHIG 155 (206)
T ss_dssp HH----HTCSEEEEECCSEEE
T ss_pred HH----hCCCCEEEEeCCccc
Confidence 74 468999999999973
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=168.90 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=121.9
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCC
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVD 182 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D 182 (309)
....++|+||||||+|+||++++++|+++|++|++++|+.....+.... + ...+.+..+|+.+. ...++|
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNA-L-KDNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-H-CSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-h-ccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 4456889999999999999999999999999999999864332221111 1 23677888898775 224699
Q ss_pred EEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
++|||||...... ..+++...+++|+.|+.++++++.+ .+ .+||++||...+. +.
T Consensus 87 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 150 (249)
T 3f9i_A 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA----------------GN 150 (249)
T ss_dssp EEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC------------------CC
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc----------------CC
Confidence 9999999754322 3357889999999999999888743 33 3899999987763 23
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+...|+.+|++.+.+++.++.+ .|+++++++||.|.++..
T Consensus 151 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 194 (249)
T 3f9i_A 151 PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMT 194 (249)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC----
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcc
Confidence 34578999999999999999876 489999999999998754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=169.45 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=123.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+||||||+|+||++++++|+++|++|++++|+... ...+..+.+|+.++. +.++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 75 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGSI 75 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999986432 235677889987761 2379
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|+||||||......+ .+++...+++|+.|+.++++++.+. + .+||++||...+. +
T Consensus 76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 139 (264)
T 2dtx_A 76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----------------I 139 (264)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc----------------C
Confidence 999999997543322 2357788999999999999988643 3 4899999987763 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcC--CcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~g--i~~~ivRp~~V~Gp 292 (309)
..+...|+.+|++.+.+++.++.+.+ +++++++||.+.+|
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~ 181 (264)
T 2dtx_A 140 TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTP 181 (264)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCc
Confidence 23447899999999999999987764 99999999999876
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=170.82 Aligned_cols=165 Identities=15% Similarity=0.071 Sum_probs=128.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+.+++|+++||||+|+||++++++|+++|++|++++|+.....+.... + ......+.+|++++ .+.
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY-L-GDNGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-H-GGGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h-cccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999999864432221111 1 12467788999876 124
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||||......+ .++++..+++|+.|+.++++++.+ .+ .++|++||...+.
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 147 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM--------------- 147 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------------
Confidence 79999999997544332 235778899999999999998754 34 3899999976652
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+ +|++++.++||.|.+|..
T Consensus 148 -~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~ 193 (248)
T 3op4_A 148 -GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT 193 (248)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTT
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchh
Confidence 2334578999999999999999876 489999999999998754
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=172.59 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=126.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+......+.++.+|++++ .+.
T Consensus 25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 44678999999999999999999999999999999986433222111111112677888999876 124
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-----CcEEEEeccccccCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-----AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-----~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
++|+||||||......+ .++++..+++|+.|+.++++++.+ .+ .+||++||...+..
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~---------- 174 (276)
T 2b4q_A 105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA---------- 174 (276)
T ss_dssp CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC----------
Confidence 79999999997543322 235678999999999998887642 23 48999999877632
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERS-CYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~-~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..... .|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 175 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~ 219 (276)
T 2b4q_A 175 ------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219 (276)
T ss_dssp ------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTT
T ss_pred ------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcc
Confidence 11224 7999999999999999876 48999999999999874
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=172.97 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+... .+ ...+.++.+|+.++. +..+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA-EL-GERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-HH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hc-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999999886432221111 11 346788899998762 2458
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|++|||||......+ .+++...+++|+.|+.++++++.+ .+.+||++||...+. +.
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 145 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------PI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------CC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC----------------CC
Confidence 999999997543322 235678899999999888776543 345899999988763 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---c--CCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---A--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~--gi~~~ivRp~~V~Gp~ 293 (309)
.+...|+.+|.+.+.+++.++.+ . |+++++++||.|++|.
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~ 190 (253)
T 1hxh_A 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM 190 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCch
Confidence 33468999999999999998876 3 8999999999999974
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=173.52 Aligned_cols=174 Identities=16% Similarity=0.062 Sum_probs=129.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------ 177 (309)
+.+++|+|+||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|+.++.
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999986443322211110 1346788999998761
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|+||||||....... .+++...+++|+.|+.++++++.+. + .+||++||..++...... .
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~-- 163 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----L-- 163 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----T--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----c--
Confidence 2459999999997543322 2346778999999999999987543 2 489999998765321100 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.+|++.+.+++.++.+. |++++++|||.|+++..
T Consensus 164 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 210 (265)
T 1h5q_A 164 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT 210 (265)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred ---cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccc
Confidence 122345789999999999999998763 89999999999999853
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=173.67 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=126.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+..
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP 101 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999986443322211111 235788899999876 1246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH------cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR------VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~------~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+|++|||||........ ++++..+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 102 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-------------- 167 (279)
T 3sju_A 102 IGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-------------- 167 (279)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS--------------
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc--------------
Confidence 99999999975443322 24678899999999999998765 343 899999987662
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|.+|
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 211 (279)
T 3sju_A 168 --GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETP 211 (279)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSH
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccch
Confidence 3334578999999999999999887 5899999999999886
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=177.56 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=132.7
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc--------c---cccc--cCCCceEEEeccccccc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--------N---LVHH--FRNPRFELIRHDVVEPI 177 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~--------~---~~~~--~~~~~v~~~~~Dl~~~~ 177 (309)
...+++|+||||||+|+||++++++|+++|++|+++++....... . .... ....++..+.+|+.++.
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 345788999999999999999999999999999999986322110 0 0000 12357888999998761
Q ss_pred ------------cCCCCEEEEcccCCCCC--CCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCC
Q 021681 178 ------------LLEVDQIYHLACPASPV--HYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEH 240 (309)
Q Consensus 178 ------------~~~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~ 240 (309)
+..+|++|||||..... ...+++...+++|+.|+.++++++.+. +.++|++||...+......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 24799999999975433 123457889999999999999999765 2489999998766433222
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..|. .+..+...|+.+|++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 165 ~~~~~-----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~ 216 (287)
T 3pxx_A 165 PGAGG-----PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDML 216 (287)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTT
T ss_pred ccccc-----cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccc
Confidence 22222 222344679999999999999998875 89999999999999854
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=171.83 Aligned_cols=169 Identities=16% Similarity=0.079 Sum_probs=126.6
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc---------
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI--------- 177 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~--------- 177 (309)
++...+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|++++.
T Consensus 14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999998643322111111 01346778889998761
Q ss_pred ---cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccc-cccCCCCCCCCC
Q 021681 178 ---LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE-VYGDPLEHPQKE 244 (309)
Q Consensus 178 ---~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~-vy~~~~~~~~~E 244 (309)
+.++|++|||||......+. ++++..+++|+.|+.++++++.+ .+ .+||++||.. .+
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 163 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE---------- 163 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC----------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc----------
Confidence 24799999999975433222 24678899999999999988743 33 3899999976 33
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 164 ------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 209 (267)
T 1vl8_A 164 ------VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209 (267)
T ss_dssp ------CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTT
T ss_pred ------cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccc
Confidence 12233468999999999999999876 48999999999998874
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=169.69 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=123.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+++|++|||||+|+||++++++|+++|++|++++|+... . .....+. . .++.+|++++ .+.++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~-~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-K-EVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALGRV 78 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-H-HHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-H-HHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999987544 2 2222222 3 6788999875 12479
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+. +++...+++|+.|+.++++++.+ .+. ++|++||...+. +
T Consensus 79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 142 (256)
T 2d1y_A 79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------A 142 (256)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------B
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------------C
Confidence 9999999975443322 24678899999999999998754 343 899999987652 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
..+...|+.+|++.+.+++.++.+. |+++++++||.+.++
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 185 (256)
T 2d1y_A 143 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE 185 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCc
Confidence 2234689999999999999998764 899999999999876
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=174.00 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec-CCCCcccccccccC---CCceEEEecccccc----c--------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHFR---NPRFELIRHDVVEP----I-------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r-~~~~~~~~~~~~~~---~~~v~~~~~Dl~~~----~-------- 177 (309)
+++|++|||||+|+||++++++|+++|++|++++| +.....+ ....+. ...+.++.+|+.+. .
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQR-LVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 87 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH-HHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHH-HHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence 46789999999999999999999999999999998 4322211 111110 34678888999876 2
Q ss_pred ----cCCCCEEEEcccCCCCCCCc---------------CChhHHHHHHHHHHHHHHHHHHHc---C-------CcEEEE
Q 021681 178 ----LLEVDQIYHLACPASPVHYK---------------YNPVKTIKTNVMGTLNMLGLAKRV---G-------AKFLLT 228 (309)
Q Consensus 178 ----~~~~D~Vih~A~~~~~~~~~---------------~~~~~~~~~Nv~gt~~ll~~a~~~---~-------~r~v~i 228 (309)
+.++|++|||||......+. +++...+++|+.|+.++++++.+. + .+||++
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i 167 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 167 (276)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence 23699999999975433221 346678999999999999998763 2 589999
Q ss_pred eccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 229 SS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
||...+. +..+...|+.+|++.+.+++.++.+. |+++++++||.|++|
T Consensus 168 sS~~~~~----------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~ 218 (276)
T 1mxh_A 168 CDAMTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218 (276)
T ss_dssp CCGGGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred CchhhcC----------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC
Confidence 9988763 23345689999999999999998774 899999999999998
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=172.97 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=125.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEeccccccc-----------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEPI----------- 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~~----------- 177 (309)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+ ......+..+.+|++++.
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999864332211111 111356788899998761
Q ss_pred -cCCCCEEEEcccCCCC-CCC----cCChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+.++|++|||||.... ..+ .++++..+++|+.|+.++++++ ++.+ .+||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 157 (267)
T 1iy8_A 89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR----------- 157 (267)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc-----------
Confidence 2369999999997543 221 2357788999999998877765 3444 4899999987652
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+ .|+++++++||.|++|.
T Consensus 158 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 202 (267)
T 1iy8_A 158 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM 202 (267)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcc
Confidence 2223468999999999999998876 48999999999998873
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=173.62 Aligned_cols=167 Identities=16% Similarity=0.096 Sum_probs=128.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------ 176 (309)
...+++|++|||||+|+||++++++|+++|++|++++|+.....+.....+ ....+..+.+|+.++
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999886432211111111 134678889998775
Q ss_pred ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc--C-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV--G-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~--~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+.++|+||||||....... .++++..+++|+.|+.++++++.+. + .++|++||...+..
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------- 170 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK------------- 170 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-------------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC-------------
Confidence 13479999999997543322 2356788999999999999999875 3 49999999875521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
...+...|+.+|++.+.+++.++.+ .|+++++++||.|.+|
T Consensus 171 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 214 (283)
T 1g0o_A 171 --AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD 214 (283)
T ss_dssp --SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccch
Confidence 1112468999999999999999876 4899999999999886
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=173.12 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=130.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+ + ..++..+.+|++++ .+..
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREE-F-GPRVHALRSDIADLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-H-GGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h-CCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999864332221111 1 24678899999876 2347
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|++|||||......+ .++++..+++|+.|+.++++++.+. +.++|++||...+. +.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 146 (255)
T 4eso_A 83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------GH 146 (255)
T ss_dssp EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------BC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------CC
Confidence 9999999997554332 2357788999999999999999764 34899999987663 23
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.+...|+.+|++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~ 190 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTK 190 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSST
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccc
Confidence 345789999999999999998874 89999999999999854
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=171.36 Aligned_cols=168 Identities=18% Similarity=0.054 Sum_probs=129.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++ .+.
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5688999999999999999999999999999999986544332211111 234677889999876 124
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|++|||||......+. ++++..+++|+.|+.++++++.+. + .++|++||...+..
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~------------- 175 (276)
T 3r1i_A 109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII------------- 175 (276)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc-------------
Confidence 799999999976543322 356778899999999999987542 2 47999999776522
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
....+...|+.||++.+.+++.++.+ .|++++.++||.|.++..
T Consensus 176 -~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~ 222 (276)
T 3r1i_A 176 -NIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELV 222 (276)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTT
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcc
Confidence 11223468999999999999999887 589999999999998753
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=169.20 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=125.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCCccccccccc-CCCceEEEeccccccc----------
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI---------- 177 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~---------- 177 (309)
+|+|+||||+|+||++++++|+++|+ +|++++|+.........+.. ...++.++.+|+.++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 89999886432221111110 1346788999998761
Q ss_pred --cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 178 --LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 --~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+.++|+||||||......+ .+++...+++|+.|+.++++++.+ .+. ++|++||..++.
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 150 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----------- 150 (244)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC-----------
Confidence 2369999999997543322 235678899999999999998743 344 899999988763
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+ .|++++++|||.|++|..
T Consensus 151 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 196 (244)
T 2bd0_A 151 -----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMW 196 (244)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTT
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhh
Confidence 2334578999999999999888765 589999999999999854
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=172.42 Aligned_cols=166 Identities=14% Similarity=0.015 Sum_probs=125.3
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
...++|+||||||+|+||++++++|+++|++|++++|+.....+...+. .....+.++.+|++++ .+
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999998654332211111 1235688899999876 12
Q ss_pred CCCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|+||||||..... . ..+++...+++|+.|+.++++++.+ .+ .+||++||...+
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~-------------- 170 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK-------------- 170 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS--------------
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc--------------
Confidence 4699999999973221 1 1235678899999999999998743 33 489999998766
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .|+++++++||.|..+-
T Consensus 171 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~ 216 (262)
T 3rkr_A 171 --NPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEF 216 (262)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----
T ss_pred --CCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCc
Confidence 23344578999999999999999876 58999999999998764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=169.81 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=124.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+|+||||+|+||++++++|+++|++|++++|+................+.++.+|+.++. +..+
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999999999999864322211111111256888999998761 2359
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC--CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
|+||||||........ +++...+++|+.|+.++++.+. +.+ .+||++||...+.
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 147 (251)
T 1zk4_A 84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---------------- 147 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc----------------
Confidence 9999999975432222 2467889999999988877754 334 4899999987763
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-----hcCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHR-----GAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~-----~~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++. ..+++++++|||.+++|.
T Consensus 148 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~ 194 (251)
T 1zk4_A 148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPL 194 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHH
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchh
Confidence 223347899999999999998876 358999999999999974
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=171.69 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=127.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC--CCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~------------~~ 179 (309)
..+|+++||||+|+||++++++|+++|++|+++++......+...+... ..++.++.+|++++. +.
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999998764433222222111 246889999998761 24
Q ss_pred CCCEEEEcccCC--CCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPA--SPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~--~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+|+||||||+. ..... .+++...+++|+.|+.++++++ ++.+. ++|++||..+++.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------ 152 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA------------ 152 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC------------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc------------
Confidence 799999999942 21111 2356788999999999999998 44554 8999999855421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.+|++.+.+++.++.+ .|+++++++||.|++|..
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 199 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMK 199 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGG
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccc
Confidence 22334578999999999999999877 589999999999999854
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=173.05 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=126.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++. +.
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999986433221111110 1346788899998761 24
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc------C-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~------~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
++|+||||||......+. +++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 165 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------- 165 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-------------
Confidence 699999999975433222 246788999999999999997654 4 4899999987652
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+. |+++++++||.|++|.
T Consensus 166 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 210 (277)
T 2rhc_B 166 ---GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM 210 (277)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHH
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCch
Confidence 22334689999999999999998763 7999999999999873
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=165.71 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vi 185 (309)
++||+++||||+++||++++++|+++|++|++.+++....... ....+..+.+|++++ .+.++|++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP-----RHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC-----CCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh-----hcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 5899999999999999999999999999999999875443321 235778889999876 456799999
Q ss_pred EcccCCCCCC--CcCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 186 HLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 186 h~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
||||+..+.. ..++|+.++++|+.|+..+++++.+ .+.+||++||...+. +......|
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~Y 147 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPAY 147 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHHH
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHHH
Confidence 9999754332 1236889999999999999888643 355899999986542 22234689
Q ss_pred HHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 260 DEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+.||.+...+.+.++.+ +||+++.|.||.|..|-
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m 184 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPL 184 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChh
Confidence 99999999999999977 48999999999998874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=171.23 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|++++ .+..
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 357899999999999999999999999999999988644332222221 34678888999876 1247
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||......+. ++++..+++|+.|+.++++++ ++.+ .++|++||...+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 145 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA--------------- 145 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc---------------
Confidence 99999999975443322 357788999999999999984 4444 3899999987663
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ +|++++.++||.|.++.
T Consensus 146 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~ 190 (247)
T 3rwb_A 146 -GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDG 190 (247)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcc
Confidence 2233478999999999999999877 58999999999998863
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=171.62 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=124.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC-cccccccccC---CCceEEEeccccccc------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFR---NPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~-~~~~~~~~~~---~~~v~~~~~Dl~~~~------------ 177 (309)
+++|+++||||+|+||++++++|+++|++|++++|+... ..+ ....+. ...+..+.+|++++.
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEK-VRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHH-HHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHH-HHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999886543 211 111111 246778889998761
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+.++|++|||||......+ .++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 147 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------------- 147 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc-------------
Confidence 2479999999997543322 235678899999999999988743 34 4899999987763
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+. |+++++++||.|.+|.
T Consensus 148 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 192 (260)
T 1x1t_A 148 ---ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPL 192 (260)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCch
Confidence 22334689999999999999998774 8999999999999985
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=172.43 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=128.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC---------cccc---cccc--cCCCceEEEecccccc--
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG---------RKDN---LVHH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~---------~~~~---~~~~--~~~~~v~~~~~Dl~~~-- 176 (309)
.+++|+++||||+|+||++++++|+++|++|+++++.... ..+. .... .....+..+.+|++++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 4678999999999999999999999999999999874211 1111 1111 1235678889999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccccccC
Q 021681 177 ----------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEVYGD 236 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~--~~r~v~iSS~~vy~~ 236 (309)
.+.++|++|||||......+ .++++..+++|+.|+.++++++.+ . +.+||++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 13479999999997654332 235678899999999999998743 3 34899999987662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ +|++++.++||.|++|..
T Consensus 171 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 216 (280)
T 3pgx_A 171 ---------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMI 216 (280)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTC
T ss_pred ---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCccc
Confidence 3334578999999999999999887 589999999999999854
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=170.63 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=122.8
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|+++. .+
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKF 81 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 45578899999999999999999999999999999998654332222111 34678899999876 12
Q ss_pred CCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---------CCcEEEEeccccccCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---------GAKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~r~v~iSS~~vy~~~~~~~~~E 244 (309)
..+|++|||||...... ..+++...+++|+.|+.++++++.+. +.++|++||...+
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~---------- 151 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG---------- 151 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT----------
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc----------
Confidence 47999999999754222 12356788999999999998887432 2269999998765
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|++.+.+++.++.+ .|++++.++||.+.+|.
T Consensus 152 ------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 197 (261)
T 3n74_A 152 ------RPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPL 197 (261)
T ss_dssp ------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChh
Confidence 23334567999999999999999877 58999999999999875
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=169.71 Aligned_cols=167 Identities=14% Similarity=0.053 Sum_probs=129.3
Q ss_pred ccCCCCCeEEEEcCCc-hhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-----------
Q 021681 111 GIGRRRLRIVVTGGAG-FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG-~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~----------- 176 (309)
...+++|++|||||+| +||++++++|+++|++|++++|+.....+...+. ....++.++.+|++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 3456889999999997 6999999999999999999998654332222111 1235788999999876
Q ss_pred -ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc-----C-CcEEEEeccccccCCCCCCCCCC
Q 021681 177 -ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----G-AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 -~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~-~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|+||||||......+ .++++..+++|+.|+.++++++.+. + .++|++||...+
T Consensus 97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~----------- 165 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGW----------- 165 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGT-----------
T ss_pred HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHc-----------
Confidence 12469999999997544332 2356788999999999999987653 3 379999998766
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .|++++.++||.|.++.
T Consensus 166 -----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 211 (266)
T 3o38_A 166 -----RAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKF 211 (266)
T ss_dssp -----CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--
T ss_pred -----CCCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchh
Confidence 23345578999999999999999877 58999999999998874
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=175.68 Aligned_cols=165 Identities=18% Similarity=0.134 Sum_probs=123.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccc-cc---cccc--CCCceEEEecccccc-----c-----
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-NL---VHHF--RNPRFELIRHDVVEP-----I----- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~-~~---~~~~--~~~~v~~~~~Dl~~~-----~----- 177 (309)
.++|++|||||+|+||++++++|+++|++|++.+|+...... .. .... ....+..+.+|++++ .
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999886433221 11 1111 135688899999876 1
Q ss_pred --cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 178 --LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 --~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+.++|+||||||....... .++++..+++|+.|+.++++++ ++.+. ++|++||...+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~---------- 152 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG---------- 152 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC----------
Confidence 2379999999997543322 2356788999999999999998 44454 8999999876632
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.||.+.|.+++.++.+ .|+++++|+||.|.++.
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 -----TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1122467999999999999999877 58999999999998764
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=173.20 Aligned_cols=165 Identities=9% Similarity=-0.020 Sum_probs=122.9
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------c
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~ 178 (309)
...+++|++|||||+|+||++++++|+++|++|++++++.....+...+. ...+.++.+|++++. +
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREM 99 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHc
Confidence 34578899999999999999999999999999999988643322221111 346888999998862 2
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|++|||||......+. ++++..+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~-------------- 165 (266)
T 3grp_A 100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV-------------- 165 (266)
T ss_dssp TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC------------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC--------------
Confidence 4799999999975433322 3578889999999888877763 3444 899999976652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 166 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~ 210 (266)
T 3grp_A 166 --GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAM 210 (266)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHH
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCch
Confidence 2223468999999999999999876 48999999999998873
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=174.90 Aligned_cols=171 Identities=18% Similarity=0.060 Sum_probs=129.9
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc--------ccccc---cc--cCCCceEEEecccccc--
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--------KDNLV---HH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~--------~~~~~---~~--~~~~~v~~~~~Dl~~~-- 176 (309)
..+++|++|||||+|+||++++++|+++|++|++++++.... .+... .. ....++.++.+|++++
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 346789999999999999999999999999999999863210 11110 00 0135788899999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccccccCCCCC
Q 021681 177 ----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEVYGDPLEH 240 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~----~--~~r~v~iSS~~vy~~~~~~ 240 (309)
.+..+|++|||||........+++...+++|+.|+.++++++.+ . +.+||++||...+....
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 166 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-- 166 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--
Confidence 12479999999997654444557889999999999999998743 2 24899999987653210
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.||++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 167 ----------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~ 213 (278)
T 3sx2_A 167 ----------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMI 213 (278)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT
T ss_pred ----------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccc
Confidence 111234679999999999999998774 79999999999999854
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=167.72 Aligned_cols=168 Identities=12% Similarity=-0.021 Sum_probs=124.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-------C-
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-------L- 179 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-------~- 179 (309)
++|+|+||||+|+||++++++|+++| ++|++++|+..... .+.+. ....+.++.+|++++ .+ .
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~-~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT-ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH-HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH-HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999 99999998654332 12221 345788999999876 12 2
Q ss_pred -CCCEEEEcccCCC-CCCC----cCChhHHHHHHHHHHHHHHHHHHHc----------------CCcEEEEeccccccCC
Q 021681 180 -EVDQIYHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----------------GAKFLLTSTSEVYGDP 237 (309)
Q Consensus 180 -~~D~Vih~A~~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----------------~~r~v~iSS~~vy~~~ 237 (309)
++|+||||||... ...+ .+++...+++|+.|+.++++++.+. ..+||++||...+...
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 7999999999754 2221 2346788999999999999887542 3489999998765432
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.. +. .+..+...|+.+|++.+.+++.++.+. |+++++++||.|.++.
T Consensus 160 ~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 209 (250)
T 1yo6_A 160 NT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209 (250)
T ss_dssp CC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----
T ss_pred cc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCC
Confidence 11 01 122345789999999999999998775 8999999999998874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=171.04 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=128.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ....++..+.+|++++ .+.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999998644322211111 1235788899999876 234
Q ss_pred CCCEEEEcccCCCCC-CC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||..... .+ .+++...+++|+.|+.++++++.+ .+.++|++||...+.
T Consensus 88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (264)
T 3ucx_A 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH--------------- 152 (264)
T ss_dssp CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC---------------
T ss_pred CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc---------------
Confidence 799999999864222 11 235778899999999999988643 346999999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ +|++++.++||.|++|.
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~ 197 (264)
T 3ucx_A 153 -SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGT 197 (264)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHH
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccccc
Confidence 3334578999999999999999887 58999999999999874
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=172.18 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=128.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
+..++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999986543322222111 235688899999886 22
Q ss_pred CCCCEEEEcccCCCC-CCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.++|++|||||.... ... .++++..+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------ 171 (283)
T 3v8b_A 104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT------------ 171 (283)
T ss_dssp SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB------------
T ss_pred CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC------------
Confidence 479999999997533 111 2356788999999999999988 44444 8999999875521
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+..+...|+.+|++.+.+++.++.+ .|++++.++||.|.+|..
T Consensus 172 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 218 (283)
T 3v8b_A 172 --FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNIS 218 (283)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTT
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcc
Confidence 12234578999999999999999987 479999999999998753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=169.16 Aligned_cols=162 Identities=14% Similarity=0.013 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc-----cc-------CC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-----IL-------LE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~-----~~-------~~ 180 (309)
+++|++|||||+|+||++++++|+++|++|++++|+.. .+...+.. ....+..+.+|+.++ .+ .+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999988654 11111110 124677888999876 22 37
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 143 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV---------------- 143 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc----------------
Confidence 9999999997543322 2356788999999888877765 44554 899999987763
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ .|+++++++||.|++|.
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 188 (255)
T 2q2v_A 144 GSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPL 188 (255)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcc
Confidence 2223468999999999999999877 48999999999999874
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=172.37 Aligned_cols=165 Identities=12% Similarity=0.055 Sum_probs=128.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++ .+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999999999986443222221111 135688899999876 12
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----c-CCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V-GAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||....... .++++..+++|+.|+.++++++.+ . +.+||++||...+.
T Consensus 104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 169 (277)
T 4fc7_A 104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-------------- 169 (277)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH--------------
T ss_pred CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence 479999999996543322 235788999999999999998743 2 34899999987652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~ 214 (277)
T 4fc7_A 170 --GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTE 214 (277)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSH
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecch
Confidence 22334689999999999999998774 8999999999999873
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=171.11 Aligned_cols=156 Identities=20% Similarity=0.147 Sum_probs=122.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..+++|++|||||+|+||++++++|+++|++|++++|........ ..+.+|+.+. .+.
T Consensus 24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~----------~~~~~Dv~~~~~~~~~~~~~~~~~g 93 (266)
T 3uxy_A 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD----------LHLPGDLREAAYADGLPGAVAAGLG 93 (266)
T ss_dssp --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS----------EECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh----------hccCcCCCCHHHHHHHHHHHHHhcC
Confidence 356889999999999999999999999999999998864433221 2235677654 234
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|++|||||......+ .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 158 (266)
T 3uxy_A 94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR--------------- 158 (266)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC---------------
Confidence 79999999997654332 2356788999999999999998 44444 899999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.||++.+.+++.++.+. |+++++++||.|++|.
T Consensus 159 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 203 (266)
T 3uxy_A 159 -PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPM 203 (266)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHH
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchH
Confidence 33345789999999999999998774 8999999999999873
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=170.19 Aligned_cols=164 Identities=14% Similarity=0.051 Sum_probs=128.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc---cCCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~------------~ 177 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ....++..+.+|++++ .
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998644332221111 2234588899999876 2
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+..+|++|||||......+ .++++..+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ------------- 151 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-------------
Confidence 3479999999997544332 2357788999999999999998542 2 3799999987662
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.+|
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~ 195 (265)
T 3lf2_A 152 ---PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESG 195 (265)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCc
Confidence 33345789999999999999998774 899999999999886
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=167.62 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=126.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999986432221111110 134678889999876 1247
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||......+. ++++..+++|+.|+.++++++.+ .+.++|++||...+. +
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 148 (247)
T 2jah_A 85 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV----------------N 148 (247)
T ss_dssp CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC----------------C
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC----------------C
Confidence 99999999975433222 24678899999999999998753 336899999987652 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 192 (247)
T 2jah_A 149 VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL 192 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcc
Confidence 233468999999999999998876 48999999999998874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=170.95 Aligned_cols=165 Identities=16% Similarity=0.039 Sum_probs=126.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|+.++. +.
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999998643322111111 01346778889987751 23
Q ss_pred CCCEEEEcccCCCC-CC----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|++|||||.... .. ..++++..+++|+.|+.++++++. +.+. +||++||...|.
T Consensus 91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 156 (260)
T 2zat_A 91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-------------- 156 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC--------------
Confidence 79999999996431 11 123467889999999999998874 3444 899999988773
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+. |+++++++||.+.++.
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 201 (260)
T 2zat_A 157 --PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNF 201 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSST
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCcc
Confidence 23344689999999999999998774 8999999999999874
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-21 Score=169.53 Aligned_cols=167 Identities=19% Similarity=0.139 Sum_probs=129.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+++|++|||||+|+||++++++|+++|++|+++++......+.....+ ...++..+.+|++++ .+
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999998765432222221111 135678899999876 12
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
.++|++|||||......+ .++++..+++|+.|+.++++++.+. +.++|++||..... .
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~---------------~ 172 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL---------------V 172 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC---------------C
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc---------------C
Confidence 479999999997544332 2357888999999999999998765 34899999965431 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 173 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~ 218 (271)
T 3v2g_A 173 PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMN 218 (271)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSS
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcc
Confidence 23345789999999999999998774 89999999999999854
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=172.02 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=128.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~ 177 (309)
+.+++|++|||||+|+||++++++|+++|++|+++++......+.....+ ....+..+.+|++++ .
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999998874332222221111 235678899999886 1
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+..+|++|||||....... .++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 170 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM------------- 170 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-------------
Confidence 2479999999997644332 235778899999999999998743 33 4899999976652
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 171 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~ 215 (269)
T 4dmm_A 171 ---GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM 215 (269)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSC
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcc
Confidence 2233468999999999999999876 48999999999999875
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=165.22 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=115.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc---CCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL---LEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~---~~~D~Vih~A 188 (309)
|+|+||||+|+||++++++|+ +|++|++++|+.. .+.+|+.++ .+ .++|+|||||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 489999999999999999999 9999999998532 245676654 22 3589999999
Q ss_pred cCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 021681 189 CPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 261 (309)
Q Consensus 189 ~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (309)
|........ +++...+++|+.++.++++++.+. +.++|++||...+. +..+...|+.
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~ 130 (202)
T 3d7l_A 67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASAAM 130 (202)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHHHH
Confidence 965433222 245678899999999999999876 45899999987652 3334478999
Q ss_pred HHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 262 GKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 262 sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+|.+.|.+++.++.+. |++++++|||.+++|.
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~ 164 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESW 164 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGH
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCch
Confidence 9999999999998764 8999999999999973
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=172.34 Aligned_cols=165 Identities=14% Similarity=0.047 Sum_probs=126.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CC---ceEEEeccccccc------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NP---RFELIRHDVVEPI------------ 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~---~v~~~~~Dl~~~~------------ 177 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+... .. .+.++.+|++++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999864332221111111 12 6888999998761
Q ss_pred cCCCCEEEEcccCCCCCC----C----cCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH----Y----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+..+|+||||||...... . .+++...+++|+.|+.++++++.+. +.++|++||...+...
T Consensus 84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 155 (280)
T 1xkq_A 84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA-------- 155 (280)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC--------
T ss_pred cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC--------
Confidence 236999999999754322 1 2246788999999999999987642 3689999998776321
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+ +|+++++++||.|++|.
T Consensus 156 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 199 (280)
T 1xkq_A 156 -------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGF 199 (280)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSH
T ss_pred -------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCc
Confidence 123468999999999999999865 58999999999999974
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=170.42 Aligned_cols=164 Identities=13% Similarity=0.036 Sum_probs=125.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++|++|||||+|+||++++++|+++|++|+++ +|+.....+...+. .....+.++.+|++++ .+..
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR 82 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999987 55432221111111 1235788899999876 2246
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++++..+++|+.|+.++++++.+ .+. +||++||...+ .
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~----------------~ 146 (258)
T 3oid_A 83 LDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI----------------R 146 (258)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT----------------S
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC----------------C
Confidence 89999999965433322 24677899999999999998743 343 89999998766 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.||++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 147 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~ 192 (258)
T 3oid_A 147 YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDAL 192 (258)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhh
Confidence 33445789999999999999998874 89999999999998743
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=173.34 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=129.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|++++ .+
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 45788999999999999999999999999999999886443322221111 234678888999876 12
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|++|||||......+ .++++..+++|+.|+.++++++.+ .+. +||++||...+
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~--------------- 166 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSE--------------- 166 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT---------------
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhC---------------
Confidence 379999999997544332 235778899999999999888754 343 89999997755
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .|++++.++||.|.+|.
T Consensus 167 -~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 212 (271)
T 4ibo_A 167 -LARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDM 212 (271)
T ss_dssp -SBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcc
Confidence 23334578999999999999999877 58999999999999874
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=172.94 Aligned_cols=164 Identities=13% Similarity=0.036 Sum_probs=126.1
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+...+... ...+.++.+|++++. +
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF 84 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567899999999 99999999999999999999998653 1111111100 123678889998761 2
Q ss_pred CCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.++|+||||||.... .. ..++++..+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 152 (261)
T 2wyu_A 85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK------------ 152 (261)
T ss_dssp SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC------------
Confidence 379999999996542 11 22356788999999999999999765 34899999977652
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|++|..
T Consensus 153 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 198 (261)
T 2wyu_A 153 ----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAA 198 (261)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGG
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchh
Confidence 22334689999999999999998775 89999999999999853
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=170.92 Aligned_cols=167 Identities=17% Similarity=0.109 Sum_probs=129.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~ 177 (309)
..+++|++|||||+|+||++++++|+++|++|+++++......+.....+ ...++..+.+|++++ .
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999998765433222221111 235688899999886 2
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+..+|++|||||......+ .++++..+++|+.|+.++++++.+. +.++|++||.....
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 158 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD--------------- 158 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------------
Confidence 2479999999997644332 2357888999999999999998765 34899999976321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.||++.+.+++.++.+ .|++++.++||.|.+|.
T Consensus 159 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 204 (270)
T 3is3_A 159 FSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDM 204 (270)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTT
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChh
Confidence 23334578999999999999999877 48999999999999874
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=172.11 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc-----cc------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-----IL------ 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~-----~~------ 178 (309)
+..++|+||||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.++ .+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999883221111111111 134678889999876 12
Q ss_pred -CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccc-cCCCCCCCCCCCCCC
Q 021681 179 -LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVY-GDPLEHPQKETYWGN 249 (309)
Q Consensus 179 -~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy-~~~~~~~~~E~~~~~ 249 (309)
.++|+||||||....... .+++...+++|+.|+.++++++.+. +.+||++||..++ ..
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 163 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG------------- 163 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS-------------
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCC-------------
Confidence 379999999986543222 2245788999999999999998765 4589999998776 21
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.|.+++.++.+. ++++++++||.++++.
T Consensus 164 ---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~ 207 (274)
T 1ja9_A 164 ---IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDM 207 (274)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence 1234679999999999999998774 8999999999998863
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=167.44 Aligned_cols=167 Identities=19% Similarity=0.115 Sum_probs=129.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc------------ccccc---cc--cCCCceEEEecccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR------------KDNLV---HH--FRNPRFELIRHDVV 174 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~------------~~~~~---~~--~~~~~v~~~~~Dl~ 174 (309)
..+++|+++||||+|+||++++++|+++|++|++++++.... .+.+. .. ....++..+.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 346789999999999999999999999999999998863211 11111 11 12357888999998
Q ss_pred cc------------ccCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEecc
Q 021681 175 EP------------ILLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTS 231 (309)
Q Consensus 175 ~~------------~~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~ 231 (309)
++ .+..+|++|||||...... ..++++..+++|+.|+.++++++.+. + .+||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 76 2247999999999754433 22357789999999999999987542 2 489999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 232 ~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+. +......|+.+|++.+.+++.++.+ +|++++.++||.|.+|..
T Consensus 167 ~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~ 216 (286)
T 3uve_A 167 GGLK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPML 216 (286)
T ss_dssp GGTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTT
T ss_pred hhcc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcc
Confidence 7662 3334578999999999999999877 589999999999998854
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=173.08 Aligned_cols=169 Identities=19% Similarity=0.119 Sum_probs=126.1
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC-CCcccccccc--cCCCceEEEeccccc----c-----
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHH--FRNPRFELIRHDVVE----P----- 176 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~-~~~~~~~~~~--~~~~~v~~~~~Dl~~----~----- 176 (309)
+....+++|+++||||+|+||++++++|+++|++|++++|+. ....+...+. .....+.++.+|+++ +
T Consensus 16 ~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~ 95 (288)
T 2x9g_A 16 PRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEE 95 (288)
T ss_dssp ------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHH
Confidence 334456789999999999999999999999999999999875 2221111111 113467889999988 4
Q ss_pred -------ccCCCCEEEEcccCCCCCCC-----c---------CChhHHHHHHHHHHHHHHHHHHHc-----------CCc
Q 021681 177 -------ILLEVDQIYHLACPASPVHY-----K---------YNPVKTIKTNVMGTLNMLGLAKRV-----------GAK 224 (309)
Q Consensus 177 -------~~~~~D~Vih~A~~~~~~~~-----~---------~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~r 224 (309)
.+.++|++|||||......+ . +++...+++|+.|+.++++++.+. +.+
T Consensus 96 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~ 175 (288)
T 2x9g_A 96 IINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLS 175 (288)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEE
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeE
Confidence 12479999999997543322 1 245678999999999999987543 238
Q ss_pred EEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 225 ~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
||++||...+. +..+...|+.+|++.+.+++.++.+. |+++++++||.|++|.
T Consensus 176 iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 231 (288)
T 2x9g_A 176 IVNLCDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV 231 (288)
T ss_dssp EEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT
T ss_pred EEEEecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc
Confidence 99999987662 33345789999999999999998774 8999999999999985
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-21 Score=171.89 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=125.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc------cCCCceEEEeccccccc---------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH------FRNPRFELIRHDVVEPI--------- 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~------~~~~~v~~~~~Dl~~~~--------- 177 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.........+. .....+.++.+|++++.
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999998643222111111 02356888999998761
Q ss_pred ---cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCC
Q 021681 178 ---LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 178 ---~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+..+|+||||||....... .+++...+++|+.|+.++++++.+. +.++|++||...+
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------- 163 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----------- 163 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc-----------
Confidence 2369999999996433222 2246778999999999999997652 3489999998732
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+. |++++++|||.|+||.
T Consensus 164 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 208 (303)
T 1yxm_A 164 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT 208 (303)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred ------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccch
Confidence 12233679999999999999998774 8999999999999983
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=169.37 Aligned_cols=169 Identities=13% Similarity=0.042 Sum_probs=126.9
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCC---CeEEEEecCCCCccccccccc-CCCceEEEeccccccc-----c---
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRG---DEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----L--- 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g---~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~-----~--- 178 (309)
....++|+||||||+|+||++++++|+++| ++|++++|+...... +.+.. ...++.++.+|+++.. +
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHHCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhccCCceEEEEecCCChHHHHHHHHHH
Confidence 445688999999999999999999999999 999999987554321 11110 1346888999998761 2
Q ss_pred ----C--CCCEEEEcccCCC-CCCC----cCChhHHHHHHHHHHHHHHHHHHHc----------------CCcEEEEecc
Q 021681 179 ----L--EVDQIYHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----------------GAKFLLTSTS 231 (309)
Q Consensus 179 ----~--~~D~Vih~A~~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----------------~~r~v~iSS~ 231 (309)
. ++|+||||||... ...+ .+++...+++|+.|+.++++++.+. +.+||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 2 6999999999754 2221 2356778999999999999988543 3589999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 232 EVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 232 ~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+.... +..+...|+.+|++.+.+++.++.+ .++++++++||.|.++.
T Consensus 175 ~~~~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 226 (267)
T 1sny_A 175 LGSIQGN-------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 226 (267)
T ss_dssp GGCSTTC-------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred cccccCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCC
Confidence 7764211 1124468999999999999999877 58999999999998764
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=169.29 Aligned_cols=166 Identities=10% Similarity=0.032 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC-CCCcccccccc-cCCCceEEEecccccc-----cc-------C
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHH-FRNPRFELIRHDVVEP-----IL-------L 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~-~~~~~~~~~~~-~~~~~v~~~~~Dl~~~-----~~-------~ 179 (309)
+++|+|+||||+|+||++++++|+++|++|++++|+ .........+. .....+.++.+|+.++ .+ .
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG 84 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999987 33222111111 0134678899999876 12 3
Q ss_pred CCCEEEEcccC-CCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC------CcEEEEeccccccCCCCCCCCC
Q 021681 180 EVDQIYHLACP-ASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG------AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 180 ~~D~Vih~A~~-~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~------~r~v~iSS~~vy~~~~~~~~~E 244 (309)
++|+||||||. ...... .+++...+++|+.|+.++++++.+ .+ .++|++||...+..
T Consensus 85 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 156 (258)
T 3afn_B 85 GIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-------- 156 (258)
T ss_dssp SCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC--------
T ss_pred CCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC--------
Confidence 79999999986 322221 124677899999999999887642 22 58999999876631
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.|.+++.++.+. |++++++|||.+++|..
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~ 202 (258)
T 3afn_B 157 -------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFH 202 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGG
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccc
Confidence 22244689999999999999988764 89999999999999854
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=173.11 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=127.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCC---ceEEEeccccccc-----------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNP---RFELIRHDVVEPI----------- 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~---~v~~~~~Dl~~~~----------- 177 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ... .+.++.+|++++.
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999986433222111110 112 6788999998761
Q ss_pred -cCCCCEEEEcccCCCCCC--C----cCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+.++|+||||||...... + .++++..+++|+.|+.++++++.+. +.+||++||...+...
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~--------- 173 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA--------- 173 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC---------
Confidence 247999999999754322 2 2356789999999999999987543 3589999998766321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 174 ------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~ 217 (297)
T 1xhl_A 174 ------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGF 217 (297)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSH
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcc
Confidence 023468999999999999998865 58999999999999874
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=170.99 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=125.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEecccccc-----ccC------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP-----ILL------ 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~-----~~~------ 179 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|+.++ .+.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999986432221111110 122678889999876 121
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|+||||||....... .+++...+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 149 (260)
T 2z1n_A 85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR--------------- 149 (260)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC---------------
Confidence 39999999996543222 23577889999999988877764 4454 899999988763
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|++|..
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 195 (260)
T 2z1n_A 150 -PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRV 195 (260)
T ss_dssp -CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCC
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchh
Confidence 22334689999999999999998774 89999999999999854
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=170.86 Aligned_cols=161 Identities=20% Similarity=0.204 Sum_probs=124.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+ ..... ..+..+.+|+.++. +.++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 83 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA-LEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGRL 83 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999999986432221 11111 24778899998761 2479
Q ss_pred CEEEEcccCCCCC-CC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||..... .+ .++++..+++|+.|+.++++++.+ .+.++|++||...+. +
T Consensus 84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 147 (270)
T 1yde_A 84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI----------------G 147 (270)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------C
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC----------------C
Confidence 9999999965322 11 124678899999999999998853 346999999975442 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ +|+++++++||.|++|.
T Consensus 148 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~ 191 (270)
T 1yde_A 148 QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPL 191 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccch
Confidence 122367999999999999999876 58999999999999973
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=172.88 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=120.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
..++|++|||||+|+||++++++|+++|++|+++++......+.....+ ....+.++.+|++++. +
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999999999864322211111111 2357888999998862 2
Q ss_pred CCCCEEEEcccCCC--CCC----CcCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEeccccccCCCCCCCCC
Q 021681 179 LEVDQIYHLACPAS--PVH----YKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 179 ~~~D~Vih~A~~~~--~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~vy~~~~~~~~~E 244 (309)
..+|++|||||... ... ..++++..+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 176 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------- 176 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc---------
Confidence 47999999999732 111 22357788999999999999887543 23899999987652
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|.+|..
T Consensus 177 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 222 (280)
T 4da9_A 177 -------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMT 222 (280)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCch
Confidence 2233468999999999999999887 589999999999998753
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=169.52 Aligned_cols=166 Identities=13% Similarity=0.038 Sum_probs=124.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc-----c-------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-----I-------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~-----~-------~ 178 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+............ ....+.++.+|+.++ . +
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999986432221111110 134678889999876 1 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|+||||||......+ .+++...+++|+.|+.++++++ ++.+. ++|++||...+..
T Consensus 84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------- 150 (248)
T 2pnf_A 84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG------------- 150 (248)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC-------------
Confidence 379999999997543221 2346788999999998877765 34454 8999999755421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|.+.+.+++.++.+ .++++++++||.+++|..
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~ 195 (248)
T 2pnf_A 151 ---NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT 195 (248)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchh
Confidence 123468999999999999998876 389999999999999853
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=167.38 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=114.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEe-cCCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+|+||||+|+||++++++|+++|++|++++ +...... .....+ ...++.++.+|+.++. +
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLD-ATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHH-HHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999984 4322211 111111 1346888999998761 2
Q ss_pred CCCCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccc-cccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSE-VYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~-vy~~~~~~~~~E~~~~ 248 (309)
.++|+||||||...... ..+++...+++|+.|+.++++++.+ .+. +||++||.. .|+.
T Consensus 82 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 149 (247)
T 2hq1_A 82 GRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------------ 149 (247)
T ss_dssp SCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------
Confidence 37999999999754322 2346788999999999999888754 344 899999974 4431
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
.+...|+.+|++.|.+++.++.+. ++++++++||.+.++
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 191 (247)
T 2hq1_A 150 -----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTD 191 (247)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred -----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecc
Confidence 234689999999999999998764 899999999999876
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=164.97 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=122.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----------ccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----------ILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----------~~~~~D~V 184 (309)
+|+++||||+|+||++++++|+++|++|++++|+... ..+.+ .+..+.+|+.++ .+.++|++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~l 74 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHVL 74 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCEE
Confidence 5799999999999999999999999999999986543 11111 156778888763 12479999
Q ss_pred EEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
|||||....... .++++..+++|+.|+.++++++. +.+. ++|++||...+... ...+
T Consensus 75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~~~ 140 (239)
T 2ekp_A 75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GPVP 140 (239)
T ss_dssp EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TTSC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CCCC
Confidence 999997543222 23577889999999999999874 3444 89999998877421 1134
Q ss_pred CCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
...|+.+|++.+.+++.++.+. |+++++++||.+.++.
T Consensus 141 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 181 (239)
T 2ekp_A 141 IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEF 181 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCch
Confidence 4689999999999999998774 8999999999999874
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=166.18 Aligned_cols=151 Identities=21% Similarity=0.180 Sum_probs=121.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC------CCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL------EVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~------~~D~V 184 (309)
+|+|+||||+|+||++++++|+++|++|++++|... . ..+.++.+|+.++ .+. ++|++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~l 70 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAV 70 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c----------cceEEEeCCCCCHHHHHHHHHHHHhhCCceEE
Confidence 579999999999999999999999999999998643 1 1346788888775 222 78999
Q ss_pred EEcccCCCCCCCcC--------ChhHHHHHHHHHHHHHHHHHHHc----C----C---cEEEEeccccccCCCCCCCCCC
Q 021681 185 YHLACPASPVHYKY--------NPVKTIKTNVMGTLNMLGLAKRV----G----A---KFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 185 ih~A~~~~~~~~~~--------~~~~~~~~Nv~gt~~ll~~a~~~----~----~---r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
|||||........+ ++...+++|+.++.++++++.+. + . ++|++||...+..
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 141 (242)
T 1uay_A 71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG--------- 141 (242)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC---------
T ss_pred EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---------
Confidence 99999754332221 56788999999999999998653 1 1 8999999887742
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|++.+.+++.++.+. |++++++|||.|++|.
T Consensus 142 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 185 (242)
T 1uay_A 142 -------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL 185 (242)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHH
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchh
Confidence 2334789999999999999988764 8999999999999974
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=169.31 Aligned_cols=162 Identities=20% Similarity=0.080 Sum_probs=123.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
+|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++. +.++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999986432221111110 1246788899998761 23799
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
++|||||......+ .++++..+++|+.|+.++++++.+ .+ .++|++||...+. +
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 145 (256)
T 1geg_A 82 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------G 145 (256)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------C
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----------------C
Confidence 99999997543222 234678899999999998888754 34 4899999976552 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|.+.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 146 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 189 (256)
T 1geg_A 146 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM 189 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch
Confidence 223468999999999999999876 48999999999998863
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=165.83 Aligned_cols=160 Identities=16% Similarity=0.027 Sum_probs=117.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D 182 (309)
++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ..+..+.+|+.++. +.++|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQA-LAAEL--EGALPLPGDVREEGDWARAVAAMEEAFGELS 80 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHS--TTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh--hhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 46789999999999999999999999999999986432221 11111 25778889998751 24799
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||....... .+++...+++|+.|+.++++.+ ++.+. +||++||...+. +.
T Consensus 81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 144 (234)
T 2ehd_A 81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------------PF 144 (234)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------------CC
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------------CC
Confidence 99999996543322 2346788999999998776665 44444 899999987763 23
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 187 (234)
T 2ehd_A 145 KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGF 187 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCc
Confidence 34578999999999999988765 48999999999998763
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=166.79 Aligned_cols=165 Identities=11% Similarity=0.001 Sum_probs=127.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.....+..... .....+.++.+|++++ .+..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999999999999998654322211111 0135788899999876 1236
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||....... .+++...+++|+.|+.++++++.+ .+ .++|++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (247)
T 3lyl_A 83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA---------------- 146 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc----------------
Confidence 8999999997644332 235678899999999999998754 33 3899999987662
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|.+.+.+++.++.+ .|+++++++||.|.++..
T Consensus 147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 192 (247)
T 3lyl_A 147 GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMT 192 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccc
Confidence 2334578999999999999999876 489999999999998754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=172.41 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=128.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-cccccccc--CCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF--RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~--~~~~v~~~~~Dl~~~------------~ 177 (309)
.+++|++|||||+|+||++++++|+++|++|+++++..... .+.+.... ....+.++.+|++++ .
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988753211 11111111 235678888999876 1
Q ss_pred cCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+.++|++|||||...... ..++++..+++|+.|+.++++++.+.- .+||++||...+.
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~-------------- 191 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ-------------- 191 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS--------------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc--------------
Confidence 347999999999744222 223578899999999999999997652 4899999988773
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|++|.
T Consensus 192 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 236 (294)
T 3r3s_A 192 --PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL 236 (294)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCcccc
Confidence 33345789999999999999998775 8999999999999864
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=167.25 Aligned_cols=161 Identities=19% Similarity=0.104 Sum_probs=124.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC--ccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG--RKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~--~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+|+++||||+|+||++++++|+++|++|++++|+... ..+...... ...++.++.+|++++. +.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 6799999999999999999999999999999986543 111111110 1346788899998761 237
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||......+ .+++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------------- 146 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc---------------
Confidence 9999999997543322 2356788999999999999987652 3 5899999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.+|
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 190 (258)
T 3a28_C 147 -GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTG 190 (258)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCCh
Confidence 2233468999999999999999876 4899999999999876
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=175.26 Aligned_cols=165 Identities=18% Similarity=0.101 Sum_probs=124.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEeccccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~~------------ 177 (309)
.+++|+||||||+|+||++++++|+++|++|++++|+.....+.... ......+.++.+|++++.
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999875433222111 111237888999998861
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc-----------CCcEEEEeccccccCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----------GAKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~r~v~iSS~~vy~~~~~~~~ 242 (309)
+..+|+||||||+.....+. +++...+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~------- 157 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL------- 157 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC-------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc-------
Confidence 24689999999975433322 356788999999999999987542 33799999987763
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||.+.+.+++.++.+ .|+++++++||.|.+|-
T Consensus 158 ---------~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 202 (319)
T 3ioy_A 158 ---------AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYI 202 (319)
T ss_dssp ---------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC---
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCc
Confidence 2233468999999888888887655 48999999999998874
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=172.31 Aligned_cols=165 Identities=13% Similarity=0.009 Sum_probs=127.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+..... .....+..+.+|++++ .+
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 3467899999999999999999999999999999998644322211111 0124567888999876 22
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||....... .++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 169 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA-------------- 169 (270)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence 479999999997544332 235778899999999999998753 23 4899999977652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.++
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 213 (270)
T 3ftp_A 170 --GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTD 213 (270)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSH
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCc
Confidence 2234478999999999999999877 4899999999999876
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=166.58 Aligned_cols=153 Identities=22% Similarity=0.191 Sum_probs=121.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------c--CC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L--LE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~--~~ 180 (309)
++|++|||||+|+||++++++|+++|++|++++|+...... ....+.+|++++. + .+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~ 72 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQ 72 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc---------ccEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46799999999999999999999999999999986543221 2456678887651 2 47
Q ss_pred CCEEEEcccCCCCCCC-----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY-----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|+||||||......+ .++++..+++|+.|+.++++++.+. +.++|++||...+. +
T Consensus 73 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~ 136 (236)
T 1ooe_A 73 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------P 136 (236)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------------C
Confidence 9999999997543222 2346788999999999999998764 24899999987762 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~-----gi~~~ivRp~~V~Gp 292 (309)
..+...|+.+|.+.+.+++.++.+. |+++++++||.|.+|
T Consensus 137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~ 181 (236)
T 1ooe_A 137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP 181 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCc
Confidence 3344689999999999999998765 499999999999886
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=171.48 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=123.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
..++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+..+.+|++++ .+.+
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999999999998644322222111 24677889999876 2247
Q ss_pred CCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHH----cC---CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 181 ~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+|++|||||..... . ..++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------------- 169 (272)
T 4dyv_A 103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------------- 169 (272)
T ss_dssp CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-------------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-------------
Confidence 99999999975432 1 1235678999999999999887643 32 4899999987662
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|++++.++||.|.+|-
T Consensus 170 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 214 (272)
T 4dyv_A 170 ---PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPM 214 (272)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC---
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChh
Confidence 3334578999999999999999877 48999999999998874
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=169.89 Aligned_cols=166 Identities=12% Similarity=-0.014 Sum_probs=123.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+...... ....+.++.+|++++. +.
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4577899999999999999999999999999998875432221111110 1346788899998761 24
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
++|+||||||......+ .+++...+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------------- 186 (285)
T 2c07_A 121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG-------------- 186 (285)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC--------------
Confidence 69999999997543322 23567889999999988888775 3444 8999999866521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|.+.+.+++.++.+. |+++++++||.+.++..
T Consensus 187 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 231 (285)
T 2c07_A 187 --NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT 231 (285)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCch
Confidence 1234689999999999999988764 89999999999998853
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=172.03 Aligned_cols=166 Identities=10% Similarity=-0.017 Sum_probs=125.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~ 178 (309)
..+++|+|+||||+|+||++++++|+++|++|++++|+.....+...+.. ...++.++.+|+.++. +
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 34678999999999999999999999999999999986433221111110 1346888999998761 2
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|+||||||......+. +++...+++|+.|+.++++++. +.+. +||++||..++.
T Consensus 107 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 172 (272)
T 1yb1_A 107 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV-------------- 172 (272)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC--------------
T ss_pred CCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC--------------
Confidence 4799999999975433322 2456889999999988888764 3444 899999987763
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc------CCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA------GVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~------gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|.+|.
T Consensus 173 --~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~ 220 (272)
T 1yb1_A 173 --SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGF 220 (272)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Confidence 22233679999999999999988764 8999999999998874
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=172.51 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=128.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+.
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3578899999999999999999999999999999886543222221111 235678888999876 124
Q ss_pred CCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|++|||||..... . ..++++..+++|+.|+.++++++.+ .+. ++|++||...+..
T Consensus 85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 151 (280)
T 3tox_A 85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------- 151 (280)
T ss_dssp CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB-------------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC-------------
Confidence 799999999965322 1 1235788999999999999998754 233 8999999876521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.||++.+.+++.++.+. |+++++++||.|.+|..
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~ 197 (280)
T 3tox_A 152 --GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPAN 197 (280)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchh
Confidence 22344789999999999999998874 89999999999999853
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=171.77 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=126.4
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~------------~~ 178 (309)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+...+... ...+.++.+|+.++ .+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999 99999999999999999999998754 1111111100 12367788999876 12
Q ss_pred CCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.++|++|||||.... .. ..++++..+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 150 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------------
Confidence 468999999997543 11 12356788999999999999999775 45899999976552
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|.++..
T Consensus 151 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 196 (275)
T 2pd4_A 151 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS 196 (275)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchh
Confidence 22334689999999999999998775 89999999999999853
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=171.29 Aligned_cols=167 Identities=19% Similarity=0.067 Sum_probs=129.3
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc--------ccccc---cc--cCCCceEEEecccccc--
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--------KDNLV---HH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~--------~~~~~---~~--~~~~~v~~~~~Dl~~~-- 176 (309)
..+++|++|||||+|+||++++++|+++|++|++++++.... .+.+. .. ....++..+.+|++++
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 346889999999999999999999999999999999863211 11111 00 1235788899999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc----C--CcEEEEecccccc
Q 021681 177 ----------ILLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYG 235 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~r~v~iSS~~vy~ 235 (309)
.+..+|++|||||...... ..++++..+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~ 183 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR 183 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence 2247999999999754432 22357889999999999999987543 2 3899999987662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.||++.+.+++.++.+. ||+++.|+||.|.+|..
T Consensus 184 ----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 229 (299)
T 3t7c_A 184 ----------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPML 229 (299)
T ss_dssp ----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT
T ss_pred ----------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccc
Confidence 33345789999999999999998775 89999999999999854
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=167.03 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=122.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc-----c------CC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----L------LE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~-----~------~~ 180 (309)
..++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ...++.++.+|++++. + .+
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 3568899999999999999999999999999999986544332221110 1357888999998761 1 36
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+ .+++...+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (252)
T 3h7a_A 84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR---------------- 147 (252)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC----------------
T ss_pred ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC----------------
Confidence 8999999997554332 23567889999999999988873 344 3899999987652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcE-EEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEV-RIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~-~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. |+++ +++.||.|.++.
T Consensus 148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~ 193 (252)
T 3h7a_A 148 GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAW 193 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChh
Confidence 33345789999999999999998774 8999 899999998874
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=165.35 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=120.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..+++|+|+||||+|+||++++++|+++|++|++++|+..... .+..+.+|+.++ .+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETHG 86 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3467889999999999999999999999999999998543221 256788898775 124
Q ss_pred CCCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||...... ..+++...+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 151 (253)
T 2nm0_A 87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL--------------- 151 (253)
T ss_dssp SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC---------------
Confidence 5899999999754322 2356889999999999999987754 344 899999986552
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 152 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 196 (253)
T 2nm0_A 152 -GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDM 196 (253)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC--
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcc
Confidence 1112357999999999999999877 47999999999998764
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=167.58 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
.+|++|||||+|+||++++++|+++|++|++++|+.....+.... +. ..+..+.+|++++ .+..+|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL-LG-NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HG-GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hc-CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 468999999999999999999999999999999865433222111 12 2588899999876 124699
Q ss_pred EEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 183 ~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
++|||||...... ..++++..+++|+.|+.++++++.+. +.++|++||...+. +..
T Consensus 80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 143 (235)
T 3l6e_A 80 LVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------GKA 143 (235)
T ss_dssp EEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------SCS
T ss_pred EEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------CCC
Confidence 9999999754322 22357889999999999999988542 23899999977552 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
....|+.||++.+.+++.++.+. |++++.++||.|..+.
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 185 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEF 185 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcc
Confidence 34689999999999999998764 7999999999998764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=163.21 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+.. ... .+..+.+|++++ .+..+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA-EAV---GAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTT---TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHc---CCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999999998643222111 111 267788999876 12359
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+ .++++..+++|+.|+.++++++.+. +. ++|++||...++.
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------------- 142 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN---------------- 142 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC----------------
Confidence 999999997543322 2356788999999999999988653 33 8999999874421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ .|+++++++||.|.++.
T Consensus 143 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 185 (245)
T 1uls_A 143 -LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRM 185 (245)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcc
Confidence 22368999999999999998876 48999999999998874
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=164.80 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=121.1
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCC
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVD 182 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D 182 (309)
+....+++|+|+||||+|+||++++++|+++|++|++++|+.. ...+. ..+.++ +|+.+. .+.++|
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~---~~~~~~-~D~~~~~~~~~~~~~~iD 83 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE----LLKRS---GHRYVV-CDLRKDLDLLFEKVKEVD 83 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHT---CSEEEE-CCTTTCHHHHHHHSCCCS
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH----HHHhh---CCeEEE-eeHHHHHHHHHHHhcCCC
Confidence 3345678899999999999999999999999999999998641 11111 245556 787222 223799
Q ss_pred EEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+||||||......+ .+++...+++|+.|+.++++++ ++.+. +||++||..+|. +.
T Consensus 84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 147 (249)
T 1o5i_A 84 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PI 147 (249)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC----------------CC
Confidence 99999996543322 2346788999999988776654 44554 999999988773 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.|++|.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 190 (249)
T 1o5i_A 148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER 190 (249)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCc
Confidence 33468999999999999998876 58999999999999985
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=168.79 Aligned_cols=165 Identities=16% Similarity=0.088 Sum_probs=129.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEeccccccc-----------cC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI-----------LL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~~-----------~~ 179 (309)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|+.+.. ..
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999999999999998765443322211 12456888999998761 13
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||........ ++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~--------------- 173 (275)
T 4imr_A 109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR--------------- 173 (275)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC---------------
Confidence 799999999975443322 3567889999999999999874 334 3899999987662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.||++.+.+++.++.+. |++++.++||.|.+|
T Consensus 174 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 217 (275)
T 4imr_A 174 -PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTD 217 (275)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCc
Confidence 23334679999999999999998774 899999999999876
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=171.32 Aligned_cols=169 Identities=12% Similarity=-0.025 Sum_probs=130.1
Q ss_pred CCccCCCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc---------
Q 021681 109 PVGIGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP--------- 176 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~--------- 176 (309)
.....+++|++|||||+| +||++++++|+++|++|++++|+..... ...... ....+..+.+|++++
T Consensus 23 ~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 23 RTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKK-RVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred cchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 345567889999999997 9999999999999999999998743211 111110 113457889999876
Q ss_pred ---ccCCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCC
Q 021681 177 ---ILLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 177 ---~~~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~ 242 (309)
.+..+|++|||||.... .. ..+++...+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~------- 174 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK------- 174 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-------
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-------
Confidence 22479999999997542 11 22357889999999999999998764 23899999987662
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.||++.+.+++.++.+. |++++.++||.|.+|..
T Consensus 175 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~ 220 (296)
T 3k31_A 175 ---------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLAS 220 (296)
T ss_dssp ---------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSC
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchh
Confidence 33345789999999999999998774 89999999999999754
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=170.85 Aligned_cols=164 Identities=15% Similarity=0.019 Sum_probs=125.5
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+++||||+ |+||++++++|+++|++|++++|+. ...+...+.. ......++.+|++++. +
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999 9999999999999999999999875 2211111110 0122367888988761 2
Q ss_pred CCCCEEEEcccCCCC----C-----CCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----V-----HYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~-----~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
.++|++|||||.... . ...+++...+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence 368999999997542 1 122356789999999999999999765 34899999987652
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|++|..
T Consensus 155 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 200 (265)
T 1qsg_A 155 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAA 200 (265)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchh
Confidence 22334689999999999999998774 89999999999999854
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=168.79 Aligned_cols=165 Identities=19% Similarity=0.122 Sum_probs=127.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC---------cccccc---cc--cCCCceEEEecccccc--
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG---------RKDNLV---HH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~---------~~~~~~---~~--~~~~~v~~~~~Dl~~~-- 176 (309)
.+++|++|||||+|+||++++++|+++|++|+++++.... ..+... .. .....+..+.+|+.++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 4678999999999999999999999999999999874221 111111 10 1235788899999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccC
Q 021681 177 ----------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGD 236 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~ 236 (309)
.+..+|++|||||......+ .++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~- 166 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK- 166 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC-
Confidence 23469999999997654332 235788899999999999998643 33 4899999987662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. |++++.++||.|.+|.
T Consensus 167 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 211 (277)
T 3tsc_A 167 ---------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPM 211 (277)
T ss_dssp ---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGG
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCc
Confidence 23334689999999999999998774 8999999999999874
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=170.61 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccc---cccCCCceEEEecccccc----------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEP---------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~---------- 176 (309)
.+++|++|||||+|+||++++++|+++|+ +|++++|+.....+... .......+.++.+|++++
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35788999999999999999999999987 99999886443222111 111245788899999876
Q ss_pred --ccCCCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCC
Q 021681 177 --ILLEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 177 --~~~~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E 244 (309)
.+..+|++|||||..... . ..++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 180 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD--------- 180 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC---------
Confidence 224699999999965422 1 223578899999999999999873 334 4999999987652
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ .|++++.++||.|.++.
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~ 225 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEF 225 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSH
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcc
Confidence 3334578999999999999999987 58999999999999873
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=167.42 Aligned_cols=167 Identities=17% Similarity=0.096 Sum_probs=124.2
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------ 176 (309)
....++|+||||||+|+||++++++|+++|++|+++++............ .....+..+.+|+++.
T Consensus 8 ~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 8 HMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp -----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999884333222111111 1235678889999876
Q ss_pred ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.+.++|++|||||......+. +++...+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------ 155 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK------------ 155 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG------------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc------------
Confidence 224799999999976443322 3567889999999999888763 3444 899999987652
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 156 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 200 (256)
T 3ezl_A 156 ----GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDM 200 (256)
T ss_dssp ----SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred ----CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcc
Confidence 3334578999999999999999877 48999999999998864
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-22 Score=168.22 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=121.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC---CCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL---EVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~---~~D~Vih~A 188 (309)
|+|+||||+|+||++++++|+++ +|++++|+...... ....... .++.+|+.++ .+. ++|+|||||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~-~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 74 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAE-LAREVGA---RALPADLADELEAKALLEEAGPLDLLVHAV 74 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHH-HHHHHTC---EECCCCTTSHHHHHHHHHHHCSEEEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHH-HHHhccC---cEEEeeCCCHHHHHHHHHhcCCCCEEEECC
Confidence 58999999999999999999998 99999885432221 1111111 6778888775 333 799999999
Q ss_pred cCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 189 CPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 189 ~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
|...... ..+++...+++|+.|+.++++++++.+. +||++||..+|. +..+...|+.+|
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~sK 138 (207)
T 2yut_A 75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV----------------QVPGFAAYAAAK 138 (207)
T ss_dssp CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH----------------SSTTBHHHHHHH
T ss_pred CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCcchHHHHH
Confidence 9654322 2335778899999999999999966554 899999998873 233457899999
Q ss_pred HHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 264 RTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 264 ~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+.|.+++.++.+ .|++++++|||.++++.
T Consensus 139 ~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~ 171 (207)
T 2yut_A 139 GALEAYLEAARKELLREGVHLVLVRLPAVATGL 171 (207)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGG
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEecCcccCCC
Confidence 9999999999877 59999999999999874
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=164.04 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=118.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+ +..+.+|+.++ .+..
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG----------LFGVEVDVTDSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT----------SEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH----------hcCeeccCCCHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999999999999999999986433221 11367788765 1246
Q ss_pred CCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||...... ..++++..+++|+.|+.++++++.+ .+. ++|++||...+.
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------------- 145 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc----------------
Confidence 899999999754322 1235788999999999999998754 343 899999986542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|.++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 189 (247)
T 1uzm_A 146 GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 189 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCccc
Confidence 1223468999999999999998876 4899999999999876
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=168.64 Aligned_cols=164 Identities=13% Similarity=0.055 Sum_probs=122.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---cc-CCCceEEEecccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HF-RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~-~~~~v~~~~~Dl~~~------------ 176 (309)
..++|++|||||+|+||++++++|+++|++|++++|+.....+...+ .. ....+.++.+|+++.
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999865433222111 11 125678899999876
Q ss_pred ccCCCCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+..+|++|||||.......+ +++...+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 150 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY------------- 150 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-------------
Confidence 124699999999975443332 3467889999999999999874 334 3899999976552
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.+|++.+.+++.++.+. |++++.++||.|..+
T Consensus 151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 194 (250)
T 3nyw_A 151 ---GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD 194 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc
Confidence 22235789999999999999998774 899999999999775
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=168.55 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=124.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|++++ .+..+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999986443222111110 134677888999876 23479
Q ss_pred CEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+ .+++...+++|+.|+.++++++.+ .+ .+||++||...+. +
T Consensus 83 D~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~----------------~ 146 (264)
T 3tfo_A 83 DVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS----------------V 146 (264)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------C
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc----------------c
Confidence 999999997543332 235788899999999999888743 34 4899999987662 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+. |++++.++||.|.++-
T Consensus 147 ~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~ 188 (264)
T 3tfo_A 147 VPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESEL 188 (264)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC----
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcc
Confidence 3344689999999999999998875 8999999999998874
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=165.08 Aligned_cols=164 Identities=15% Similarity=0.056 Sum_probs=123.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec-CCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r-~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
+++|+++||||+|+||++++++|+++|++|++++| +..... .....+ ....+..+.+|++++. +
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKAN-EVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999987 322211 111111 1346788899998761 2
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|++|||||......+ .++++..+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 147 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG------------- 147 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC-------------
Confidence 379999999997543322 23567889999999888877764 3454 8999999866521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
......|+.+|.+.+.+++.++.+ .|+++++++||.|.+|..
T Consensus 148 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 192 (246)
T 2uvd_A 148 ---NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMT 192 (246)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcch
Confidence 123468999999999999998866 489999999999988753
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=170.16 Aligned_cols=164 Identities=10% Similarity=-0.033 Sum_probs=125.6
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~------------~~ 178 (309)
+++|+|+||||+ |+||++++++|+++|++|++++|+.. ..+...+... ...+.++.+|++++ .+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 577899999999 99999999999999999999998653 1111111100 12356788999876 12
Q ss_pred CCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
.++|+||||||.... .. ..+++...+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------- 166 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------- 166 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----------
Confidence 479999999997542 11 12356788999999999999998764 24899999977652
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+. |+++++++||.|++|..
T Consensus 167 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 212 (285)
T 2p91_A 167 -----VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAA 212 (285)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchh
Confidence 22334689999999999999998774 89999999999999854
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=166.58 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=121.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCccccccccc--CCCceEEEeccccccc------------cCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+|+|+||||+|+||++++++|+++|++|+++ +|+..... .....+ ....+..+.+|+.++. +.+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE-EVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999985 55432211 111111 1246778899998761 237
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||....... .+++...+++|+.|+.++++++.+. +. ++|++||...+.
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 143 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI---------------- 143 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC----------------
Confidence 9999999997543322 2356778999999999999988653 44 899999986542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|.+.+.+++.++.+ .|+++++++||.+++|.
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 188 (244)
T 1edo_A 144 GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM 188 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred CCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccch
Confidence 1123468999999999999998876 48999999999999874
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=165.00 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=129.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
++++||+++||||+++||++++++|+++|++|++.+|+..... ..... -...++..+.+|++++ .+
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999998754321 11111 1235677889999876 34
Q ss_pred CCCCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
..+|++|||||+......+ ++|+..+++|+.|+..+++++.+ .+.++|++||...+.
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------- 145 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT---------------- 145 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence 6799999999975433322 35788999999999999888643 356999999987652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||.+.+.+.+.++.+ +||+++.|.||.|..|-
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 190 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPL 190 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChh
Confidence 2223468999999999999999977 48999999999998774
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=169.56 Aligned_cols=163 Identities=20% Similarity=0.214 Sum_probs=122.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----------cC
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LL 179 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----------~~ 179 (309)
.+.+++|++|||||+|+||++++++|+++|++|+++++......+ .. ...+.++.+|++++. +.
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g 78 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA----DL-GDRARFAAADVTDEAAVASALDLAETMG 78 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHH----HT-CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHH----hc-CCceEEEECCCCCHHHHHHHHHHHHHhC
Confidence 345678999999999999999999999999999999984322111 11 346888999998761 23
Q ss_pred CCCEEEEcccCCCCC--------CCcCChhHHHHHHHHHHHHHHHHHHHc------------C-CcEEEEeccccccCCC
Q 021681 180 EVDQIYHLACPASPV--------HYKYNPVKTIKTNVMGTLNMLGLAKRV------------G-AKFLLTSTSEVYGDPL 238 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~a~~~------------~-~r~v~iSS~~vy~~~~ 238 (309)
.+|++|||||..... ...++++..+++|+.|+.++++++.+. + .++|++||...+.
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 155 (257)
T 3tl3_A 79 TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD--- 155 (257)
T ss_dssp CEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C---
T ss_pred CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC---
Confidence 799999999964321 223457889999999999999988642 2 2799999987662
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.||++.+.+++.++.+ .|++++.++||.|.+|..
T Consensus 156 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~ 201 (257)
T 3tl3_A 156 -------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLL 201 (257)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC
T ss_pred -------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhh
Confidence 2223467999999999999999877 489999999999998753
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=165.92 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=129.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++||+++||||+++||++++++|+++|++|++++++....++...+.. ...++..+.+|++++ .+.
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999986543322222211 235678899999887 346
Q ss_pred CCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||+..... + .++|++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~-------------- 149 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR-------------- 149 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------------
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC--------------
Confidence 7999999999654322 2 236889999999999999888643 34 3899999987552
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+...+.+.++.+ +||+++.|.||.|-.|-
T Consensus 150 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 194 (254)
T 4fn4_A 150 --GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNI 194 (254)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSC
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcc
Confidence 2223468999999999999999977 48999999999998773
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=171.92 Aligned_cols=164 Identities=17% Similarity=0.100 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.+++|+||||||+|+||++++++|+++|++|++++|+.....+...+.. ....+.++.+|+++.. +.
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999999999986543322211110 2357888999998761 24
Q ss_pred CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
++|+||||||......+ .+++...+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 173 (301)
T 3tjr_A 108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV-------------- 173 (301)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC--------------
Confidence 79999999997644332 235678899999999999998743 33 4899999987662
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.||++.+.+++.++.+. |+++++++||.|.++
T Consensus 174 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 217 (301)
T 3tjr_A 174 --PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETK 217 (301)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccc
Confidence 33345789999999999999998764 899999999999876
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=168.96 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=128.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEecccccc--------ccCC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEP--------ILLE 180 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~--------~~~~ 180 (309)
+.+++|++|||||+|+||++++++|+++|++|++++|+.....+... .......+..+.+|+.++ .+.+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999999986543322211 111235677888999776 2347
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++++..+++|+.|+.++++++.+ .+ .++|++||...+ .
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~----------------~ 149 (267)
T 3t4x_A 86 VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAI----------------M 149 (267)
T ss_dssp CSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGT----------------S
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhc----------------c
Confidence 99999999976544332 35677899999998888777643 34 389999998776 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.+.+|
T Consensus 150 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (267)
T 3t4x_A 150 PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE 193 (267)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCc
Confidence 33445789999999999999998774 799999999999876
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=168.47 Aligned_cols=167 Identities=15% Similarity=0.062 Sum_probs=124.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEeccccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~~------------ 177 (309)
.+++|+||||||+|+||++++++|+++|++|++++|+.....+.... .-....+.++.+|+.++.
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999864322211111 101245778899998762
Q ss_pred cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHH----HHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMG----TLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~g----t~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+.++|+||||||......+ .+++...+++|+.+ +..+++.+++.+ .+||++||...+..
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---------- 178 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------- 178 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc----------
Confidence 2379999999997543332 23467889999999 556666666665 58999999887632
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ .++++++++||.|.++.
T Consensus 179 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~ 226 (279)
T 1xg5_A 179 ----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQF 226 (279)
T ss_dssp ----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSH
T ss_pred ----CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchh
Confidence 12233468999999999999988765 47999999999998863
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=162.95 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=126.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
.|+||||||+++||++++++|+++|++|++++++.....+... +...+..+.+|++++ .+.++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4799999999999999999999999999999986433322221 235677889999886 3467999
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (309)
+|||||......+. ++|+..+++|+.|+..+.+++. +.+.++|++||...+. +...
T Consensus 79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~~~~ 142 (247)
T 3ged_A 79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------SEPD 142 (247)
T ss_dssp EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------CCTT
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------CCCC
Confidence 99999975544332 3688999999999999988874 3456999999987652 2223
Q ss_pred CCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
...|+.||.+...+.+.++.+. +|+++.|.||.|-.|.
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~ 182 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTE 182 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCC
Confidence 4689999999999999998775 7999999999997764
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=168.40 Aligned_cols=161 Identities=13% Similarity=0.029 Sum_probs=120.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~D~V 184 (309)
|++|||||+|+||++++++|+++|++|++++|+.....+...+......+..+.+|++++ .+..+|++
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 101 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL 101 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 799999999999999999999999999999986433222111111114678889999876 12458999
Q ss_pred EEcccCCCC-CCC----cCChhHHHHHHHHHHHHHHHHHH----Hc-CC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RV-GA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 185 ih~A~~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~-~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|||||.... ..+ .++++..+++|+.|+.++++++. +. .. +||++||...+. +.
T Consensus 102 vnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~----------------~~ 165 (272)
T 2nwq_A 102 INNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW----------------PY 165 (272)
T ss_dssp EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS----------------CC
T ss_pred EECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc----------------CC
Confidence 999997532 221 23577889999999998888764 33 35 899999987662 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|++.+.+++.++.+ .|+++++++||.|.+|.
T Consensus 166 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~ 208 (272)
T 2nwq_A 166 PGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEF 208 (272)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcc
Confidence 33468999999999999999876 48999999999998874
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=165.05 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=119.2
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
....++|+|+||||+|+||++++++|+++|++|++++|+...... ..+..|+.+. .+
T Consensus 17 ~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 17 RGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----------HSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----------EEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----------cceEEEeCCHHHHHHHHHHHHHHc
Confidence 444567899999999999999999999999999999987543321 2344555543 23
Q ss_pred CCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|+||||||...... ..+++...+++|+.|+.++++++.+. +.+||++||...+
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------------- 149 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL---------------- 149 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG----------------
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc----------------
Confidence 46899999999754322 12356788999999999999998764 2389999998776
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
.+..+...|+.+|++.+.+++.++.+ .++++++++||.|.++
T Consensus 150 ~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~ 196 (251)
T 3orf_A 150 NRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP 196 (251)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc
Confidence 23334578999999999999999877 4899999999999876
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=169.20 Aligned_cols=166 Identities=10% Similarity=-0.001 Sum_probs=129.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------ 177 (309)
+.+++|+|+||||+|+||++++++|+++|++|++++|......+.+...+ ...++.++.+|+.++.
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999985433322222111 2357888999998761
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..++|++|||||........ +++...+++|+.|+.++++++.+ .+ .++|++||...+.
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 171 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------------- 171 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-------------
Confidence 24799999999976543322 35678899999999999888744 34 3899999977652
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+..+...|+.+|++.+.+++.++.+ .+++++.++||.|.++.
T Consensus 172 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 216 (271)
T 4iin_A 172 ---GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDM 216 (271)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCc
Confidence 3334578999999999999999877 58999999999998874
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-21 Score=169.23 Aligned_cols=169 Identities=14% Similarity=-0.065 Sum_probs=126.1
Q ss_pred CCccCCCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc---------
Q 021681 109 PVGIGRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP--------- 176 (309)
Q Consensus 109 p~~~~~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~--------- 176 (309)
++....++|+||||||+ |+||++++++|+++|++|++++|+.... +.+.+. .....+.++.+|++++
T Consensus 7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK-DRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhH-HHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 34556788999999999 9999999999999999999999873221 111111 0123467889999876
Q ss_pred ---ccCCCCEEEEcccCCCC----C-----CCcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCC
Q 021681 177 ---ILLEVDQIYHLACPASP----V-----HYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 177 ---~~~~~D~Vih~A~~~~~----~-----~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~ 241 (309)
.+..+|++|||||.... . ...+++...+++|+.|+.++++++.+. +.++|++||...+.
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 159 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER------ 159 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc------
Confidence 12468999999997543 1 122356788999999999999999765 34899999987662
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+. |+++++++||.|.++..
T Consensus 160 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 205 (271)
T 3ek2_A 160 ----------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAA 205 (271)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----
T ss_pred ----------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhh
Confidence 33345789999999999999998764 89999999999998753
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=163.00 Aligned_cols=163 Identities=15% Similarity=0.030 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc------------cCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+||+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+.++.+|++++. +.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999998654332221111 12357888999998761 236
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||......+ .+++...+++|+.|+.++++++.+ .+.++|++||...+. +
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~----------------~ 144 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR----------------L 144 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------------C
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc----------------c
Confidence 9999999997654432 235678899999999999999854 345788888865442 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~-~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.+..+ .+++++.++||.|..+.
T Consensus 145 ~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~ 186 (235)
T 3l77_A 145 IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYF 186 (235)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSST
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccc
Confidence 223368999999999999998654 48999999999998764
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=167.11 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=125.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
+|+++||||+|+||++++++|+++| +.|++++|+.....+ +.+.. ..++.++.+|++++ .+..+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKK-LKEKY-GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHH-HHHHH-GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHH-HHHHh-CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 6899999999999999999999985 688888875432221 11111 24678899999876 12479
Q ss_pred CEEEEcccCCCC-CCC----cCChhHHHHHHHHHHHHHHHHH----HHcCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||.... ... .++++..+++|+.|+.++++++ ++.+.++|++||...+. +
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~----------------~ 143 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM----------------Y 143 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------S
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------C
Confidence 999999997433 221 2356788999999999999988 44557999999987662 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCceeCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ivRp~~V~Gp~~ 294 (309)
..+...|+.+|++.+.+++.++.+. +++++.++||.|.+|..
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~ 186 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQ 186 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCS
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhH
Confidence 3345789999999999999999875 89999999999998853
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=165.92 Aligned_cols=166 Identities=15% Similarity=0.043 Sum_probs=125.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccc--ccc----------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDV--VEP---------- 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl--~~~---------- 176 (309)
...+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+.++.+|+ .++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999998644322211111 0123567788888 554
Q ss_pred --ccCCCCEEEEcccCCCCC-CC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCC
Q 021681 177 --ILLEVDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 177 --~~~~~D~Vih~A~~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E 244 (309)
.+..+|++|||||..... .. .++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------- 157 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ--------- 157 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS---------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc---------
Confidence 224799999999974321 11 22467889999999999999884 334 4899999987652
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--CcEEEEEeCceeCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGP 292 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~g--i~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+.+ ++++.+.||.|..+
T Consensus 158 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~ 200 (252)
T 3f1l_A 158 -------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA 200 (252)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc
Confidence 333447899999999999999998863 99999999999764
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=165.63 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=121.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~D~V 184 (309)
|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...+..+.+|++++. +.++|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE-LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 589999999999999999999999999999986432221 11111 136788899998761 2369999
Q ss_pred EEcccCCC-CCC----CcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPAS-PVH----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~-~~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||... ... ..++++..+++|+.|+.++++++. +.+ .+||++||...+. +..
T Consensus 79 vnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~~ 142 (248)
T 3asu_A 79 VNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PYA 142 (248)
T ss_dssp EECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CCT
T ss_pred EECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc----------------CCC
Confidence 99999652 111 123577889999999999998875 334 4999999987652 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYG 291 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~G 291 (309)
+...|+.+|++.+.+++.++.+. |+++++++||.|.|
T Consensus 143 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~g 182 (248)
T 3asu_A 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGG 182 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccccc
Confidence 44789999999999999998774 89999999999994
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=161.62 Aligned_cols=160 Identities=12% Similarity=0.037 Sum_probs=120.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc----CCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL----LEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~----~~~D~Vih 186 (309)
||+||||||+|+||++++++|+++|++|++++|+.....+..... ...+.++.+|+.+. .+ ...|+|||
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL--SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC--SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999999999998654332222111 34567888898876 12 22499999
Q ss_pred cccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 187 LACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 187 ~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
|||......+. +++...+++|+.|+.++++++.+. +.++|++||...+. +......
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~ 142 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQEST 142 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTTCHH
T ss_pred eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCCCch
Confidence 99975443322 346788999999999999987653 33899999987762 3334578
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 259 YDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
|+.+|++.+.+++.++.+. |++++.++||.|..+-
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 180 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEF 180 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChH
Confidence 9999999999999998875 8999999999998874
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=166.00 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc------------cCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~------------~~~ 180 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|+.++. +.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 84 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 84 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999986433221111110 1346788899998761 247
Q ss_pred CCEEEEcccCC-CCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPA-SPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~-~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||.. ....+ .+++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 149 (262)
T 1zem_A 85 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------------- 149 (262)
T ss_dssp CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS---------------
T ss_pred CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc---------------
Confidence 99999999965 22221 2356788999999999999987543 4 3899999987663
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|..+
T Consensus 150 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 150 -GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 2223468999999999999998866 4899999999998776
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=164.56 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----------ccCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----------ILLEVD 182 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----------~~~~~D 182 (309)
+++|++|||||+|+||++++++|++ |+.|++++|+....... .....+..+.+|+.+. .+.++|
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAAL----AEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH----HTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHH----HhhcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 4678999999999999999999988 89999998854322211 1234678888888765 123699
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
++|||||........ +++...+++|+.|+.++++++. +.+.++|++||...+. +..
T Consensus 78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 141 (245)
T 3e9n_A 78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG----------------PHP 141 (245)
T ss_dssp EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-------------------------
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc----------------CCC
Confidence 999999975443322 2467889999999998888864 3456899999987763 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|++.+.+++.++.+ .|+++++++||.|.++.
T Consensus 142 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 183 (245)
T 3e9n_A 142 GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPM 183 (245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCch
Confidence 4578999999999999999876 58999999999999874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=170.55 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=127.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc--------cccccc---c--cCCCceEEEecccccc--
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--------KDNLVH---H--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~--------~~~~~~---~--~~~~~v~~~~~Dl~~~-- 176 (309)
..+++|++|||||+|+||++++++|+++|++|+++++..... .+.+.+ . .....+..+.+|++++
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 346789999999999999999999999999999998753211 111110 0 1235788899999876
Q ss_pred ----------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccC
Q 021681 177 ----------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGD 236 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~ 236 (309)
.+..+|++|||||......+ .++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~- 200 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR- 200 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC-
Confidence 12479999999997644332 235778899999999999998743 22 3799999987662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. ||+++.++||.|++|.
T Consensus 201 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 245 (317)
T 3oec_A 201 ---------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM 245 (317)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred ---------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcc
Confidence 23344689999999999999998874 8999999999999873
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=167.68 Aligned_cols=168 Identities=13% Similarity=-0.019 Sum_probs=125.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc-----------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI----------- 177 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~----------- 177 (309)
....++|+|+||||+|+||++++++|+++|++|+++++......+..... .....+.++.+|++++.
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999977664322221111111 12357888999998761
Q ss_pred -cCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH-----HcC-CcEEEEeccccccCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|+||||||......+ .+++...+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 169 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM----------- 169 (267)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-----------
T ss_pred HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-----------
Confidence 2479999999997654332 23577889999999999999873 333 4899999976652
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |+++++++||.|.++..
T Consensus 170 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 215 (267)
T 4iiu_A 170 -----GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMI 215 (267)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTC
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcc
Confidence 22345789999999999999988774 89999999999999864
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-21 Score=168.97 Aligned_cols=162 Identities=20% Similarity=0.182 Sum_probs=125.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~~~ 181 (309)
+++|+++||||+|+||++++++|+++|++|++++|+.....+... .+. ..+..+.+|++++. +..+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA-ALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-Hhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999986433222111 111 46778899998761 2468
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|++|||||........ ++++..+++|+.|+.++++++.+. +.+||++||...++. .
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------------~ 144 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA-----------------F 144 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-----------------H
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC-----------------C
Confidence 9999999975433222 246788999999999999998764 358999999887621 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
....|+.+|++.+.+++.++.+ .|+++++++||.|.++..
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 187 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT 187 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchh
Confidence 1257999999999999998876 489999999999999853
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=166.67 Aligned_cols=166 Identities=15% Similarity=0.061 Sum_probs=123.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~ 178 (309)
.+++|+|+||||+|+||++++++|+++|++|++++|+...... ..... ....+.++.+|+.++. +
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK-AEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHH-HHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999986543221 11111 1346788899998761 2
Q ss_pred CCCCEEEEcccCCCC-CCCc-----CChhHHHHHHHHHH----HHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASP-VHYK-----YNPVKTIKTNVMGT----LNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~-~~~~-----~~~~~~~~~Nv~gt----~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|+||||||.... .... +++...+++|+.|+ ..+++.+++.+. +||++||...+..
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 178 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV----------- 178 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC-----------
Confidence 359999999997544 2221 24677899999995 455666666554 9999999876521
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
....+...|+.+|++.|.+++.++.+. + ++++++||.+.++..
T Consensus 179 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~ 224 (279)
T 3ctm_A 179 ---NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDIT 224 (279)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTT
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccc
Confidence 113344689999999999999998774 6 999999999998754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=168.21 Aligned_cols=165 Identities=18% Similarity=0.109 Sum_probs=121.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
++|+||||||+|+||++++++|+++|++|++++.......+.....+ ....+.++.+|++++ .+..
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 104 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR 104 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999999887543222222211111 235788899999876 2247
Q ss_pred CCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+|+||||||...... ..+++...+++|+.|+.++++++.+. +.+||++||...+..
T Consensus 105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 173 (272)
T 4e3z_A 105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG----------- 173 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC-----------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC-----------
Confidence 999999999754322 22356788999999999999987653 237999999876532
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.......|+.+|++.+.+++.++.+. |+++++++||.|.+|..
T Consensus 174 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 219 (272)
T 4e3z_A 174 ----SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLH 219 (272)
T ss_dssp ----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcc
Confidence 11133579999999999999998775 89999999999999853
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=166.18 Aligned_cols=165 Identities=16% Similarity=0.039 Sum_probs=129.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+++||+++||||+++||++++++|+++|++|++.+++.....+...+.. ...++..+.+|++++ .+.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 5789999999999999999999999999999999986543332222211 235677888999887 345
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH-----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||......+. ++|+.++++|+.|+..+++++.+ .+ .+||++||...+.
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-------------- 151 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-------------- 151 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------------
Confidence 799999999976544433 36889999999999999887632 23 4899999987652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+...+.+.++.+ +||+++.|.||.|..|.
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 196 (255)
T 4g81_D 152 --ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDM 196 (255)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGG
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCch
Confidence 2223468999999999999999977 48999999999998763
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=165.04 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=128.2
Q ss_pred CCCCCeEEEEcCCch--hHHHHHHHHHHCCCeEEEEecCCCCcc--cccccccCCCceEEEeccccccc-----------
Q 021681 113 GRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHFRNPRFELIRHDVVEPI----------- 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~--IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~~~~~v~~~~~Dl~~~~----------- 177 (309)
.+++|+++||||+|+ ||++++++|+++|++|++++|+..... ..+.......++.++.+|++++.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999987 999999999999999999988643211 11112223347889999998761
Q ss_pred -cCCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+..+|++|||||.... .. ..+++...+++|+.++.++++++.+. +.+||++||...+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL---------- 153 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc----------
Confidence 2469999999997542 11 12246778999999999999999765 23899999987662
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.||++.+.+++.++.+. |++++.++||.|.++..
T Consensus 154 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 199 (266)
T 3oig_A 154 ------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSA 199 (266)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGG
T ss_pred ------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccc
Confidence 33345789999999999999998774 89999999999998743
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=161.95 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccccCCCceEEEeccccccc-------cCCCCEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPI-------LLEVDQI 184 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~~-------~~~~D~V 184 (309)
.++||+++||||+++||+++++.|+++|++|++.+++..... +.+.. ...++..+.+|++++. ..++|++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL 83 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAK--DGGNASALLIDFADPLAAKDSFTDAGFDIL 83 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH--TTCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHH--hCCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 578999999999999999999999999999999998643211 11111 2356788899998872 2359999
Q ss_pred EEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||+.....+. ++|++++++|+.|+..+++++.+ .+ .+||++||...+. +..
T Consensus 84 VNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g~~ 147 (247)
T 4hp8_A 84 VNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------GGI 147 (247)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCS
T ss_pred EECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------CCC
Confidence 9999976544432 36889999999999999987532 33 4899999977552 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
....|+.||.....+.+.++.+ +||+++.|.||.|..|.
T Consensus 148 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~ 189 (247)
T 4hp8_A 148 RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNN 189 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc
Confidence 3468999999999999999877 48999999999998763
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=167.09 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=112.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------c
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~ 177 (309)
.+.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. .....+.++.+|++++ .
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 44568899999999999999999999999999999998644332221111 1235678899999876 1
Q ss_pred cCCCCEEEEcccCCCCCC-------CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH-------YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+.++|++|||||...... ..+++...+++|+.|+.++++++. +.+. +||++||...|.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------- 153 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence 247999999998632111 223467889999999887777653 3444 899999988762
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+...|+.+|++.+.+++.++.+. |++++.++||.|++|..
T Consensus 154 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 196 (253)
T 3qiv_A 154 ---------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEAN 196 (253)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccch
Confidence 12469999999999999999875 79999999999999853
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=166.23 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=118.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCccccccccc-CCCceEE-Eeccccccc------------cCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFEL-IRHDVVEPI------------LLE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~~-~~~~v~~-~~~Dl~~~~------------~~~ 180 (309)
||+|+||||+|+||++++++|+++|++|+++ +|+.....+...... ....+.. +.+|+.+.. +.+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999998 554322211111100 1234455 888987751 347
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|+||||||......+ .+++...+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 145 (245)
T 2ph3_A 81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG--------------- 145 (245)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC---------------
Confidence 9999999997543221 2356788999999976666654 44554 8999999765421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
..+...|+.+|.+.+.+++.++.+. |++++++|||.+++|.
T Consensus 146 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 189 (245)
T 2ph3_A 146 -NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEM 189 (245)
T ss_dssp -CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcc
Confidence 1223689999999999999988764 8999999999999874
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=166.40 Aligned_cols=164 Identities=19% Similarity=0.135 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++|++|||||+|+||++++++|+++|++|++.++......+.+...+ ...++..+.+|++++ .+.
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999988654332222221111 235678889999876 224
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
.+|++|||||......+. ++++..+++|+.|+.++++++.+. +.++|++||...+. +
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 168 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL----------------L 168 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH----------------C
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc----------------C
Confidence 799999999975443322 246788999999999999998764 34899999987652 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
......|+.||++.+.+++.++.+. |++++.++||.|..|.
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 212 (267)
T 3u5t_A 169 HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDL 212 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC---
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcc
Confidence 2334689999999999999999874 8999999999998874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=165.06 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=124.5
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---c---cccc--CCCceEEEecccccc------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---L---VHHF--RNPRFELIRHDVVEP------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~---~~~~--~~~~v~~~~~Dl~~~------ 176 (309)
.+.+++|+++||||+|+||++++++|+++|++|++++|+.....+. + ...+ ...++..+.+|++++
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 3457889999999999999999999999999999999876532221 1 0000 135688899999876
Q ss_pred ------ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCC
Q 021681 177 ------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 177 ------~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~ 241 (309)
.+..+|++|||||......+. ++++..+++|+.|+.++++++.+. + .++|++||...+..
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----- 158 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP----- 158 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-----
Confidence 124799999999976443332 246788999999999999998654 3 38999999765421
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCc
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFN 288 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~ 288 (309)
...+...|+.||++.+.+++.++.+ .|++++.++||.
T Consensus 159 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~ 198 (285)
T 3sc4_A 159 ----------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRT 198 (285)
T ss_dssp ----------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSS
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCC
Confidence 1123368999999999999999877 589999999994
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=166.24 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=128.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||++|||||+++||++++++|+++|++|++.+|+....++...+. ..++..+.+|++++ .+.+
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999998654433322222 24566788999876 3457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|++|||||......+. ++|+..+++|+.|+..+++++.+. +.++|++||...+. +.
T Consensus 104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------------~~ 167 (273)
T 4fgs_A 104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------------GT 167 (273)
T ss_dssp EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS----------------CC
T ss_pred CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc----------------CC
Confidence 99999999975444433 368899999999999999998654 23799999976552 23
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+...+.+.++.+. ||+++.|.||.|..|.
T Consensus 168 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~ 210 (273)
T 4fgs_A 168 PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTG 210 (273)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChh
Confidence 334689999999999999999874 8999999999998874
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=164.83 Aligned_cols=165 Identities=11% Similarity=-0.016 Sum_probs=127.4
Q ss_pred cCCCCCeEEEEcCCch--hHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------
Q 021681 112 IGRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~--IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------ 176 (309)
..+++|+|+||||+|+ ||++++++|+++|++|++++|.. ..+...+. .....+.++.+|++++
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 3467899999999966 99999999999999999999875 11111111 0123477889999876
Q ss_pred ccCCCCEEEEcccCCCCC---------CCcCChhHHHHHHHHHHHHHHHHHHHc----CCcEEEEeccccccCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPV---------HYKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQK 243 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~r~v~iSS~~vy~~~~~~~~~ 243 (309)
.+..+|++|||||..... ...+++...+++|+.++.++++++.+. +.++|++||...+.
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~-------- 171 (280)
T 3nrc_A 100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK-------- 171 (280)
T ss_dssp HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS--------
T ss_pred HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc--------
Confidence 234689999999975431 122356778999999999999998653 34899999987662
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ .|+++++++||.|.++..
T Consensus 172 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 217 (280)
T 3nrc_A 172 --------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAA 217 (280)
T ss_dssp --------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGG
T ss_pred --------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhh
Confidence 3344578999999999999999876 589999999999998753
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=167.14 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=126.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------~~ 178 (309)
..++|+++||||+|+||++++++|+++|++|+++++......+..... ....++.++.+|+++. .+
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357789999999999999999999999999999985432222111111 1235688899999876 12
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||......+ .+++...+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 167 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-------------- 167 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc--------------
Confidence 479999999997644332 235678899999999999998743 34 3899999977652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+..+...|+.+|++.+.+++.++.+. |++++.++||.|.++..
T Consensus 168 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 213 (269)
T 3gk3_A 168 --GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMV 213 (269)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhh
Confidence 23344789999999999999998774 89999999999998753
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=164.81 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=125.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+... . ....+..+.+|++++ .+..
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~-~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEV-A-HGGNAVGVVGDVRSLQDQKRAAERCLAAFGK 79 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-H-TBTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH-H-cCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999999999999999986433222111 1 134678899999876 2347
Q ss_pred CCEEEEcccCCCCCCC---------cCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY---------KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+|++|||||....... .+.++..+++|+.|+.++++++.+ .+.++|++||...+.
T Consensus 80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 147 (281)
T 3zv4_A 80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------------ 147 (281)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc------------
Confidence 9999999997533221 113677899999999999998754 345899999987652
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+. .++++.++||.|..+-
T Consensus 148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~ 191 (281)
T 3zv4_A 148 ----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDL 191 (281)
T ss_dssp ----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCc
Confidence 33344689999999999999998875 3999999999998873
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=168.52 Aligned_cols=165 Identities=16% Similarity=0.081 Sum_probs=122.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|++++ .+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999998654322211111 0123357889999876 22
Q ss_pred CCCCEEEEcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHH----cC---CcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..+|++|||||..... . ..++++..+++|+.|+.++++++.+ .+ .+||++||...+
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~------------ 177 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ------------ 177 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC------------
Confidence 4699999999975332 1 1235778999999999998887643 32 489999998765
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+..+...|+.+|++.+.+++.++.+ +|++++.++||.|..+-
T Consensus 178 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 223 (281)
T 4dry_A 178 ----TPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDM 223 (281)
T ss_dssp ----CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC--
T ss_pred ----CCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChh
Confidence 23344578999999999999999876 58999999999998864
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=162.39 Aligned_cols=153 Identities=18% Similarity=0.094 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------c--CC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L--LE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~--~~ 180 (309)
++|+++||||+|+||++++++|+++|++|++++|+...... ....+.+|++++. + .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---------~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~ 76 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQK 76 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC---------CcEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999999999986543221 2455677887651 2 47
Q ss_pred CCEEEEcccCCCCCCC-----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY-----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||......+ .+++...+++|+.++.++++++.+. +.++|++||...+. +
T Consensus 77 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 140 (241)
T 1dhr_A 77 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD----------------G 140 (241)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc----------------C
Confidence 9999999997543322 2346788999999999999998764 34899999987763 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~-----gi~~~ivRp~~V~Gp 292 (309)
..+...|+.+|.+.+.+++.++.+. |+++++++||.|-.+
T Consensus 141 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~ 185 (241)
T 1dhr_A 141 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 185 (241)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc
Confidence 2334689999999999999998763 599999999999775
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=168.43 Aligned_cols=165 Identities=12% Similarity=-0.021 Sum_probs=125.6
Q ss_pred CCCCCeEEEEcCCch--hHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------c
Q 021681 113 GRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~--IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~ 177 (309)
.+++|++|||||+|+ ||++++++|+++|++|++++|+.... +...+.. ....+.++.+|++++ .
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALK-KRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHH-HHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 467899999999987 99999999999999999998863211 1111110 113577889999876 2
Q ss_pred cCCCCEEEEcccCCCC----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|++|||||.... .. ..+++...+++|+.++.++++++.+. +.+||++||...+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------- 175 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------- 175 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence 2479999999997541 11 22357788999999999999998764 23899999987663
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.||++.+.+++.++.+ +|++++.++||.|.++..
T Consensus 176 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 221 (293)
T 3grk_A 176 -----VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAA 221 (293)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhh
Confidence 2334578999999999999999877 489999999999998753
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=160.07 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=117.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vi 185 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.. +|++++ .+.++|++|
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 56789999999999999999999999999999987532 445443 235799999
Q ss_pred EcccCCCCC-C----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 186 h~A~~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
||||..... . ..++++..+++|+.|+.++++++.+. +.++|++||...+. +..+..
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~~ 128 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK----------------VVANTY 128 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----------------CCTTCH
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----------------CCCCch
Confidence 999975222 1 12356788999999999999999765 34899999987763 333457
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CcEEEEEeCceeCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAG-VEVRIARIFNTYGPRM 294 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~g-i~~~ivRp~~V~Gp~~ 294 (309)
.|+.+|++.+.+++.++.+.+ ++++.++||.|.+|..
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~ 166 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAY 166 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhh
Confidence 899999999999999998865 9999999999998853
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=161.78 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=122.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc-----CCCCE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL-----LEVDQ 183 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~-----~~~D~ 183 (309)
++|++|||||+|+||++++++|++ .|+.|++.++..... ...+..+.+|++++ .+ ..+|+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~ 73 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFDG 73 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCCE
Confidence 578999999999999999999999 788898888754311 23457888999876 11 26899
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
+|||||........ ++++..+++|+.|+.++++++.+.- .++|++||...+. +....
T Consensus 74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~ 137 (244)
T 4e4y_A 74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI----------------AKPNS 137 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC----------------CCTTB
T ss_pred EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc----------------CCCCC
Confidence 99999975433322 3567889999999999999987652 3899999987762 33344
Q ss_pred CHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 257 SCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
..|+.||++.+.+++.++.+ +|+++++++||.|.+|
T Consensus 138 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 176 (244)
T 4e4y_A 138 FAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTD 176 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCch
Confidence 68999999999999999875 5899999999999886
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=164.13 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=120.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cccccCCCceEEEeccccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEPI------------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~Dl~~~~------------~ 178 (309)
.++|+++||||+|+||++++++|+++|++|++++|+.....+. +........+..+.+|++++. +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999864332211 111111246788899998761 2
Q ss_pred CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHH----HHcC----CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA----KRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a----~~~~----~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|+||||||... .+++...+++|+.|+.++++.+ ++.+ .++|++||...+.
T Consensus 85 g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 145 (267)
T 2gdz_A 85 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------- 145 (267)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC---------------
Confidence 46899999998642 4578899999999877666554 3432 3899999988763
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH--H---hcCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYH--R---GAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a--~---~~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++ . ..|+++++++||.|.+|.
T Consensus 146 -~~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~ 192 (267)
T 2gdz_A 146 -PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI 192 (267)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHH
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchh
Confidence 22234689999999999998752 2 358999999999998873
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-21 Score=167.90 Aligned_cols=180 Identities=15% Similarity=0.013 Sum_probs=128.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCccccccccc-CCCceEEEecccccc-----c-------cCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-----I-------LLE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~-----~-------~~~ 180 (309)
++|+|+||||+|+||++++++|++ .|++|++++|+.....+...... ...++.++.+|+.+. . +.+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 568999999999999999999999 99999999986432221111110 124678889999875 1 237
Q ss_pred CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccC-CC----------CCCC
Q 021681 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGD-PL----------EHPQ 242 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~-~~----------~~~~ 242 (309)
+|+||||||....... .+++...+++|+.|+.++++++.+.. .+||++||..++.. .. ...+
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI 162 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccccc
Confidence 9999999997543322 23467789999999999999998752 38999999766532 00 0111
Q ss_pred CCCCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHHh-------cCCcEEEEEeCceeCCCC
Q 021681 243 KETYWG--------------NVNPIGERSCYDEGKRTAETLTMDYHRG-------AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 243 ~E~~~~--------------~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-------~gi~~~ivRp~~V~Gp~~ 294 (309)
.|+.+. ...+..+.+.|+.+|++.+.+++.++.+ .|+++++++||.|.++..
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~ 235 (276)
T 1wma_A 163 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235 (276)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT
T ss_pred chhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcC
Confidence 111000 0011223478999999999999998866 489999999999988753
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=164.13 Aligned_cols=166 Identities=14% Similarity=0.045 Sum_probs=124.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+++|++|||||+|+||++++++|+++|++|+++++......+.....+ ....+..+.+|++++ .+
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999998554332221111111 134678889999876 12
Q ss_pred CCCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.++|++|||||...... . .++++..+++|+.|+.++++++.+. +.++|++||...+..
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-------------- 150 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--------------
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--------------
Confidence 47999999998652222 1 2246788999999999999999765 348999999876611
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. +++++.++||.|.++.
T Consensus 151 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~ 194 (259)
T 3edm_A 151 -GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTF 194 (259)
T ss_dssp -CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcc
Confidence 22234689999999999999998875 3999999999998874
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=169.89 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=125.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEe-cCCCCcccccccc--cCCCceEEEeccccccc-------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------- 177 (309)
+++|++|||||+|+||++++++|+++|++|++++ |+.....+...+. .....+.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 123 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 123 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence 5678999999999999999999999999999998 7543222111111 01346788888987754
Q ss_pred ----------------cCCCCEEEEcccCCCCCCC------------------cCChhHHHHHHHHHHHHHHHHHHH---
Q 021681 178 ----------------LLEVDQIYHLACPASPVHY------------------KYNPVKTIKTNVMGTLNMLGLAKR--- 220 (309)
Q Consensus 178 ----------------~~~~D~Vih~A~~~~~~~~------------------~~~~~~~~~~Nv~gt~~ll~~a~~--- 220 (309)
+..+|+||||||......+ .+++...+++|+.|+.++++++.+
T Consensus 124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~ 203 (328)
T 2qhx_A 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 203 (328)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1369999999997543222 234567899999999999998753
Q ss_pred -cC-------CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCce
Q 021681 221 -VG-------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNT 289 (309)
Q Consensus 221 -~~-------~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V 289 (309)
.+ .+||++||...+. +..+...|+.+|++.+.+++.++.+. ||++++|+||.|
T Consensus 204 ~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v 267 (328)
T 2qhx_A 204 GTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 267 (328)
T ss_dssp HSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred hcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcc
Confidence 33 3899999987662 23345689999999999999998774 899999999999
Q ss_pred eCCC
Q 021681 290 YGPR 293 (309)
Q Consensus 290 ~Gp~ 293 (309)
.++.
T Consensus 268 ~T~~ 271 (328)
T 2qhx_A 268 VLVD 271 (328)
T ss_dssp SCCC
T ss_pred cCCc
Confidence 9885
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=163.05 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=122.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccc--ccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDV--VEP------------ 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl--~~~------------ 176 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+. .......++..|+ .+.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998654332211111 1223455565555 543
Q ss_pred ccCCCCEEEEcccCCCCCC-----CcCChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
.+..+|++|||||...... ..+++...+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK----------- 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence 2347999999999743322 123577889999999999999984 3333 899999987652
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ .+++++.++||.|..+
T Consensus 160 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~ 204 (247)
T 3i1j_A 160 -----GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG 204 (247)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc
Confidence 3334578999999999999999876 4799999999999764
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=155.71 Aligned_cols=147 Identities=14% Similarity=0.234 Sum_probs=112.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHH-HCCCeEEEEecCCC-CcccccccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll-~~g~~V~~i~r~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
+|+|+||||+|+||++++++|+ +.|++|++++|+.. ...+.. .....+.++.+|++++ .+.++|+|||||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI---IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH---HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc---cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 4569999999999999999999 89999999998644 222110 0235788899999875 567899999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS-CYDEGKRTA 266 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~ 266 (309)
|.. |+. +.++++++++.+. +||++||..+|+...... .+ | .. .... .|+.+|..+
T Consensus 82 g~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~-~~--~---~~-~~~~~~y~~~K~~~ 138 (221)
T 3r6d_A 82 MES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVAL-EK--W---TF-DNLPISYVQGERQA 138 (221)
T ss_dssp CCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHH-HH--H---HH-HTSCHHHHHHHHHH
T ss_pred CCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccc-cc--c---cc-cccccHHHHHHHHH
Confidence 742 445 9999999999886 899999999886422110 00 0 00 0113 799999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
|.+++. .+++++++|||.++++
T Consensus 139 e~~~~~----~~i~~~~vrpg~v~~~ 160 (221)
T 3r6d_A 139 RNVLRE----SNLNYTILRLTWLYND 160 (221)
T ss_dssp HHHHHH----SCSEEEEEEECEEECC
T ss_pred HHHHHh----CCCCEEEEechhhcCC
Confidence 998753 6899999999999998
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=165.18 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=124.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEe-cCCCCcccccccc--cCCCceEEEeccccccc-------------
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------- 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------- 177 (309)
+++|++|||||+|+||++++++|+++|++|++++ |+.....+...+. .....+.++.+|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 86 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence 5678999999999999999999999999999999 7543222111111 01346788888987754
Q ss_pred ----------------cCCCCEEEEcccCCCCCCC------------------cCChhHHHHHHHHHHHHHHHHHHH---
Q 021681 178 ----------------LLEVDQIYHLACPASPVHY------------------KYNPVKTIKTNVMGTLNMLGLAKR--- 220 (309)
Q Consensus 178 ----------------~~~~D~Vih~A~~~~~~~~------------------~~~~~~~~~~Nv~gt~~ll~~a~~--- 220 (309)
+..+|++|||||......+ .+++...+++|+.|+.++++++.+
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~ 166 (291)
T 1e7w_A 87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 166 (291)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1369999999997543222 234567899999999999998753
Q ss_pred -cC-------CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCce
Q 021681 221 -VG-------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT 289 (309)
Q Consensus 221 -~~-------~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V 289 (309)
.+ .+||++||...+. +......|+.+|++.+.+++.++.+ .||+++.++||.|
T Consensus 167 ~~~~~~~~~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 230 (291)
T 1e7w_A 167 GTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230 (291)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred hcCCCCCCCCcEEEEEechhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCc
Confidence 33 4899999987662 2334578999999999999999876 4899999999999
Q ss_pred eCCC
Q 021681 290 YGPR 293 (309)
Q Consensus 290 ~Gp~ 293 (309)
..+.
T Consensus 231 ~T~~ 234 (291)
T 1e7w_A 231 VLVD 234 (291)
T ss_dssp CCGG
T ss_pred cCCc
Confidence 7764
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=162.74 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=116.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc-------ccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-------ILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~-------~~~~~D~Vih~ 187 (309)
||++|||||+|+||++++++|+++|++|++++|+....... .+.. ....+..++.+-.+. .+.++|++|||
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~n 79 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL-EAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSN 79 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH-HHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 46899999999999999999999999999998865432211 1100 011222222222222 23479999999
Q ss_pred ccCC-CCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPA-SPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 188 A~~~-~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
||.. ..... .++++..+++|+.|+.++++++. +.+ .++|++||...+. +.....
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~~~ 143 (254)
T 1zmt_A 80 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKELS 143 (254)
T ss_dssp CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTTCH
T ss_pred CCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc----------------CCCCch
Confidence 9975 32222 23567889999999999999874 333 4999999987662 223346
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.|+.+|.+.+.+++.++.+. |+++++++||.|+||.
T Consensus 144 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~ 182 (254)
T 1zmt_A 144 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSED 182 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccc
Confidence 89999999999999998774 8999999999998875
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-20 Score=161.28 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=114.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----cc----CCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL----LEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~----~~~D~Vih 186 (309)
+|+|+||||+|+||++++++|+++|++|++++|+...... . +.+|+.+. .+ ..+|+|||
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~ 68 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLVL 68 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 4689999999999999999999999999999986433221 0 34566544 22 46799999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCC-----CCC-------C
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKET-----YWG-------N 249 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~-----~~~-------~ 249 (309)
|||.... ...++..+++|+.|+.++++++.+ .+ .++|++||...+......+..+. .+. .
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T 1fjh_A 69 CAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145 (257)
T ss_dssp CCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhc
Confidence 9986431 245889999999999999998863 33 48999999888732111110000 000 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..+..+...|+.||.+.+.+++.++.+ .|+++++++||.|.++.
T Consensus 146 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 192 (257)
T 1fjh_A 146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL 192 (257)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc
Confidence 012223468999999999999998876 58999999999999875
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=164.12 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=112.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
|+||||||+||||++++++|+++ |++|++++|+...... + ....++++.+|+.++ .+.++|+|||+|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-l----~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST-L----ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH-H----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH-H----hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57999999999999999999999 9999999986433221 1 123577888998775 5678999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
.. . . . ++|+.++.+++++|++.++ +||++||..+|. .+ ..|+.+|..+|+
T Consensus 76 ~~--~----~--~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~~K~~~E~ 126 (287)
T 2jl1_A 76 PH--Y----D--N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEE---------------SI----IPLAHVHLATEY 126 (287)
T ss_dssp CC--S----C--H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG---------------CC----STHHHHHHHHHH
T ss_pred CC--c----C--c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------CC----CchHHHHHHHHH
Confidence 42 1 1 1 5799999999999999987 899999998762 11 369999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+++. .+++++++||+.++|+.
T Consensus 127 ~~~~----~~~~~~ilrp~~~~~~~ 147 (287)
T 2jl1_A 127 AIRT----TNIPYTFLRNALYTDFF 147 (287)
T ss_dssp HHHH----TTCCEEEEEECCBHHHH
T ss_pred HHHH----cCCCeEEEECCEecccc
Confidence 9853 68999999999988864
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=163.49 Aligned_cols=165 Identities=21% Similarity=0.136 Sum_probs=125.8
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----------cC
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LL 179 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----------~~ 179 (309)
...+++|++|||||+|+||++++++|+++|++|++++|+.....+...+. ...+.++.+|+++.. +.
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQLG 102 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTSS
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 34568899999999999999999999999999999998644332222211 346888999998761 23
Q ss_pred CCCEEEEc-ccCCCCCCC---------cCChhHHHHHHHHHHHHHHHHHHHc-----------CCcEEEEeccccccCCC
Q 021681 180 EVDQIYHL-ACPASPVHY---------KYNPVKTIKTNVMGTLNMLGLAKRV-----------GAKFLLTSTSEVYGDPL 238 (309)
Q Consensus 180 ~~D~Vih~-A~~~~~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~r~v~iSS~~vy~~~~ 238 (309)
.+|++||| |+....... .+++...+++|+.|+.++++++... +.+||++||...+.
T Consensus 103 ~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 179 (281)
T 3ppi_A 103 RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE--- 179 (281)
T ss_dssp EEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS---
T ss_pred CCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC---
Confidence 58999999 544322211 1236888999999999999987521 23899999988762
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 239 EHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.++.
T Consensus 180 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 224 (281)
T 3ppi_A 180 -------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPI 224 (281)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchh
Confidence 33345789999999999999998774 8999999999998763
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=160.98 Aligned_cols=163 Identities=11% Similarity=0.030 Sum_probs=123.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---ccc---c--cCCCceEEEecccccc--------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVH---H--FRNPRFELIRHDVVEP-------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~---~--~~~~~v~~~~~Dl~~~-------- 176 (309)
.+++|+++||||+|+||++++++|+++|++|++++|+....... +.. . ....++..+.+|++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999876532211 110 0 0135678899999876
Q ss_pred ----ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCC
Q 021681 177 ----ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQK 243 (309)
Q Consensus 177 ----~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~ 243 (309)
.+..+|++|||||........ ++++..+++|+.|+.++++++.+ .+ .++|++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence 124799999999975443322 35678899999999999998754 23 489999997755210
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCce
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT 289 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V 289 (309)
.......|+.||++.+.+++.++.+ .|++++.++||.+
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~ 197 (274)
T 3e03_A 157 --------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTV 197 (274)
T ss_dssp --------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBC
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcc
Confidence 0223467999999999999999877 4899999999953
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=164.95 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=123.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc--ccccccc--CCCceEEEecccccc-----------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~----------- 176 (309)
..+++|++|||||+|+||++++++|+++|++|+++++...... +.+...+ ...++.++.+|++++
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999887533211 1111111 135688899999876
Q ss_pred -ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 177 -ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 177 -~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+.++|++|||||......+. ++++..+++|+.|+.++++++.+. +.++|++||...+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------ 154 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------ 154 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC------------
Confidence 124799999999976544322 356788999999999999999874 248999999876532
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+. |++++.++||.|..+
T Consensus 155 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (262)
T 3ksu_A 155 ----TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTS 197 (262)
T ss_dssp ----HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTH
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCc
Confidence 2223579999999999999999875 899999999999765
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-20 Score=166.71 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=122.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc--cc-----cCCCceEEEecccccc-----cc-----
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HH-----FRNPRFELIRHDVVEP-----IL----- 178 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~--~~-----~~~~~v~~~~~Dl~~~-----~~----- 178 (309)
+|+|+||||+|+||++++++|+++|++|+++++.......... .. ....++.++.+|++++ .+
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999998888775433221111 00 0124688899999876 12
Q ss_pred CCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||......+ .+++...+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~-------------- 147 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM-------------- 147 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS--------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc--------------
Confidence 249999999996543222 2356788999999999999986 33444 899999987652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.||++.+.+++.++.+ .|+++++|+||.|.++-
T Consensus 148 --~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 --GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 2223468999999999999999875 58999999999998874
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=163.72 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=123.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
.++|+|+||||+|+||++++++|+++|++|++++|+.....+...+. .....+.++.+|+++.. +.
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999998643322111110 12236788899998751 24
Q ss_pred CCCEEEEc-ccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHL-ACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~-A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
++|+|||| ||.......+ +++...+++|+.|+.++++++.+ .+.++|++||...+.
T Consensus 106 ~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------------- 169 (286)
T 1xu9_A 106 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV---------------- 169 (286)
T ss_dssp SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS----------------
T ss_pred CCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc----------------
Confidence 79999999 5653322122 24577899999999999998754 345899999987652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc-----CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~-----gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.||.+.+.+++.++.+. ++++++++||.|.++
T Consensus 170 ~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~ 215 (286)
T 1xu9_A 170 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 215 (286)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh
Confidence 22345789999999999999887664 899999999999875
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=163.04 Aligned_cols=165 Identities=12% Similarity=-0.000 Sum_probs=126.4
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc------cccc--cCCCceEEEecccccc------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHH--FRNPRFELIRHDVVEP------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~------~~~~--~~~~~v~~~~~Dl~~~------ 176 (309)
...+++|+||||||+|+||.+++++|+++|++|++++|+....... .... .....+..+.+|++++
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3457889999999999999999999999999999999876543211 0111 1135678889999876
Q ss_pred ------ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCC
Q 021681 177 ------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHP 241 (309)
Q Consensus 177 ------~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~ 241 (309)
.+.++|+||||||......+. ++++.++++|+.|+.++++++.. .+ .+||++||...+..
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~----- 194 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP----- 194 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC-----
Confidence 134799999999975443322 34678899999999999999854 23 48999999876521
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCce
Q 021681 242 QKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNT 289 (309)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V 289 (309)
.+......|+.+|++.+.+++.++.+. +|+++.+.||.+
T Consensus 195 ---------~~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~ 235 (346)
T 3kvo_A 195 ---------VWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTA 235 (346)
T ss_dssp ---------GGTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBC
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 112345789999999999999998874 799999999963
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=167.62 Aligned_cols=164 Identities=16% Similarity=0.063 Sum_probs=124.3
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC---------Cccccccccc--CCCceEEEecccccc----
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT---------GRKDNLVHHF--RNPRFELIRHDVVEP---- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~---------~~~~~~~~~~--~~~~v~~~~~Dl~~~---- 176 (309)
..+++|++|||||+|+||++++++|+++|++|++++++.. ...+.....+ ....+..+.+|++++
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 3467899999999999999999999999999999987621 1111111111 234677889999876
Q ss_pred --------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc-----------CCcEEEEecccc
Q 021681 177 --------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----------GAKFLLTSTSEV 233 (309)
Q Consensus 177 --------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~r~v~iSS~~v 233 (309)
.+..+|++|||||......+ .+++...+++|+.|+.++++++.+. +.+||++||...
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~ 182 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence 12479999999997654332 2357788999999999999987432 148999999776
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 234 y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+. +......|+.||++.+.+++.++.+ .||+++.|+|| +..+
T Consensus 183 ~~----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~ 227 (322)
T 3qlj_A 183 LQ----------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTR 227 (322)
T ss_dssp HH----------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSC
T ss_pred cc----------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCc
Confidence 52 2233468999999999999999887 58999999999 6554
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=158.18 Aligned_cols=169 Identities=12% Similarity=0.030 Sum_probs=128.7
Q ss_pred cCCCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCc-cccccccc--CCCceEEEecccccc----------
Q 021681 112 IGRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF--RNPRFELIRHDVVEP---------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~~~--~~~~v~~~~~Dl~~~---------- 176 (309)
..+++|+++||||+ |+||.+++++|+++|++|+++++..... .+...+.. ...++.++.+|+.++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 45688999999999 9999999999999999999998865443 22221111 135788888999876
Q ss_pred --ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHH----HHcC-CcEEEEeccccccCCCCCCCCCC
Q 021681 177 --ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 --~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|++|||||......+. +++...+++|+.|+.++++++ ++.+ .++|++||...+..
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 166 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIA--------- 166 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccccccc---------
Confidence 234689999999976543322 356788999999999999987 3334 48999999765522
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--CcEEEEEeCceeCCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGPRM 294 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~g--i~~~ivRp~~V~Gp~~ 294 (309)
....+...|+.+|++.+.+++.++.+.+ ++++.+.||.|..+-.
T Consensus 167 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~ 212 (267)
T 3gdg_A 167 -----NFPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLS 212 (267)
T ss_dssp -----CSSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCG
T ss_pred -----CCCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchh
Confidence 1112346899999999999999998753 8999999999988643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-20 Score=165.27 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=126.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc-c------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-I------------ 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~-~------------ 177 (309)
..++|+||||||+|+||++++++|+++|++|++++|+.....+...+. ....++.++.+|+++. .
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999998754332222211 1234788999999885 1
Q ss_pred cCCCCEEEEcccCCCCC----------------------------------CCcCChhHHHHHHHHHHHHHHHHHHH---
Q 021681 178 LLEVDQIYHLACPASPV----------------------------------HYKYNPVKTIKTNVMGTLNMLGLAKR--- 220 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~----------------------------------~~~~~~~~~~~~Nv~gt~~ll~~a~~--- 220 (309)
+..+|+||||||+.... ...+.++..+++|+.|+.++++++..
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 24799999999975321 01224567799999999999998753
Q ss_pred -cC-CcEEEEeccccccCCCCC--------------------------------CCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 221 -VG-AKFLLTSTSEVYGDPLEH--------------------------------PQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 221 -~~-~r~v~iSS~~vy~~~~~~--------------------------------~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
.+ .+||++||...+...... ...+. ....+...|+.||++.
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~~SK~a~ 243 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN-----GWPSFGAAYTTSKACL 243 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTT-----TCCSSCHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccc-----cCcccchhhHHHHHHH
Confidence 23 489999997654321100 00111 1112346899999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEeCceeCCC
Q 021681 267 ETLTMDYHRGA-GVEVRIARIFNTYGPR 293 (309)
Q Consensus 267 E~~v~~~a~~~-gi~~~ivRp~~V~Gp~ 293 (309)
+.+++.++.+. +++++.++||.|.++-
T Consensus 244 ~~~~~~la~e~~~i~v~~v~PG~v~T~~ 271 (311)
T 3o26_A 244 NAYTRVLANKIPKFQVNCVCPGLVKTEM 271 (311)
T ss_dssp HHHHHHHHHHCTTSEEEEECCCSBCSGG
T ss_pred HHHHHHHHhhcCCceEEEecCCceecCC
Confidence 99999999885 7999999999998863
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=156.87 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=121.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++||++|||||+++||++++++|+++|++|++.+|..... .. ....+.+|++++ .+.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG---LP------EELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT---SC------TTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC---CC------cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999853221 11 112567888776 3467
Q ss_pred CCEEEEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 181 ~D~Vih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+|++|||||..... .+ .++|+..+++|+.|+.++++++.+ .+ .++|++||...+-
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~-------------- 144 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVL-------------- 144 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhcc--------------
Confidence 99999999964322 12 236788999999999999888643 34 3899999976541
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPI-GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~-~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+. .....|+.||.+.+.+.+.++.+ +||+++.|.||.|-.|
T Consensus 145 --~~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~ 189 (261)
T 4h15_A 145 --PLPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETE 189 (261)
T ss_dssp --CCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCH
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCc
Confidence 21 12367999999999999999987 4899999999999765
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=163.13 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=115.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
+|+|+||||||+||++++++|+++| ++|++++|+....... .+....++++.+|+.++ ++.++|+|||+|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~---~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAK---ELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHH---HHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHH---HHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 4789999999999999999999999 9999999875432110 11123578889998775 5678999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
.... ...+.|+.++.+++++|++.++ +||++|+..+|+... ..+...|+.+|..+|.
T Consensus 82 ~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~--------------~~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 82 YWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA--------------GRLAAAHFDGKGEVEE 139 (299)
T ss_dssp HHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT--------------TSCCCHHHHHHHHHHH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC--------------CcccCchhhHHHHHHH
Confidence 3211 1235789999999999999987 899988878775311 1123679999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+++. .|++++++||+.+||+.
T Consensus 140 ~~~~----~gi~~~ilrp~~~~~~~ 160 (299)
T 2wm3_A 140 YFRD----IGVPMTSVRLPCYFENL 160 (299)
T ss_dssp HHHH----HTCCEEEEECCEEGGGG
T ss_pred HHHH----CCCCEEEEeecHHhhhc
Confidence 8865 58999999999999974
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=158.47 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=116.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-e--cCCCCcccccccccCCCceEEEecccccc-------ccCCCCEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-D--NFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIY 185 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~--r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-------~~~~~D~Vi 185 (309)
+|+++||||+|+||++++++|+++|++|+++ + |+.....+.. ..+ ...++.+.+-.+. .+..+|++|
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFE-SEN--PGTIALAEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH-HHS--TTEEECCCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHH-HHh--CCCcccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4799999999999999999999999999998 5 7543222111 111 1233333322222 234699999
Q ss_pred EcccCCCC---CCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASP---VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 186 h~A~~~~~---~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
||||.... ..+. ++++..+++|+.|+.++++++. +.+ .+||++||...+. +.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~ 141 (244)
T 1zmo_A 78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK----------------PL 141 (244)
T ss_dssp ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------CC
T ss_pred ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC----------------CC
Confidence 99997544 2222 3567889999999999999875 334 3899999987763 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.....|+.+|.+.+.+++.++.+ .|+++++++||.|..+.
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 184 (244)
T 1zmo_A 142 AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPT 184 (244)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCc
Confidence 33467999999999999999876 48999999999998764
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=159.81 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=125.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccccccc------------c-
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L- 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~------------~- 178 (309)
+++|+++||||+|+||++++++|+++|++|+++++......+.....+ ....+..+.+|+.+.. +
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 84 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999887543322221111111 2346778888987751 1
Q ss_pred -----CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCC
Q 021681 179 -----LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 -----~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
..+|++|||||........ ++++..+++|+.|+.++++++.+. +.++|++||...+.
T Consensus 85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----------- 153 (255)
T 3icc_A 85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------- 153 (255)
T ss_dssp HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS-----------
T ss_pred ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc-----------
Confidence 1399999999975443322 246778999999999999998765 34899999987662
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+. |++++.++||.|.++..
T Consensus 154 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 199 (255)
T 3icc_A 154 -----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMN 199 (255)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSS
T ss_pred -----CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccch
Confidence 23334789999999999999998774 89999999999998753
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=154.18 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=128.4
Q ss_pred cCCCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCccccc--ccccCCCceEEEecccccc-----------
Q 021681 112 IGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~--~~~~~~~~v~~~~~Dl~~~----------- 176 (309)
++++||+++||||+| +||.+++++|+++|++|++.+|+....++.. .+......+..+.+|++++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 457899999999887 8999999999999999999998754432221 1222345778899999876
Q ss_pred -ccCCCCEEEEcccCCCCCCC----c----CChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCC
Q 021681 177 -ILLEVDQIYHLACPASPVHY----K----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 177 -~~~~~D~Vih~A~~~~~~~~----~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E 244 (309)
.+..+|++|||||....... . +++...+++|+.++..+.+.+.+.- .+||++||....
T Consensus 82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~---------- 151 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE---------- 151 (256)
T ss_dssp HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT----------
T ss_pred HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc----------
Confidence 34579999999996533211 1 2356678999999999998886542 389999997654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+......|+.||.+.+.+++.++.+ +||+++.|.||.|..|..
T Consensus 152 ------~~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~ 198 (256)
T 4fs3_A 152 ------FAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSA 198 (256)
T ss_dssp ------SCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGG
T ss_pred ------cCcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhh
Confidence 23334478999999999999999877 489999999999987643
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=158.59 Aligned_cols=163 Identities=13% Similarity=-0.013 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHH---CCCeEEEEecCCCCcccccccc---cCCCceEEEeccccccc---------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI---------L 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~---~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~~---------~ 178 (309)
+++|+++||||+|+||++++++|++ +|++|++++|+.....+...+. .....+.++.+|++++. .
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999 8999999998643322211111 11346788899998761 1
Q ss_pred -----CCCC--EEEEcccCCCCC-------CCcCChhHHHHHHHHHHHHHHHHHHHc------C-CcEEEEeccccccCC
Q 021681 179 -----LEVD--QIYHLACPASPV-------HYKYNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEVYGDP 237 (309)
Q Consensus 179 -----~~~D--~Vih~A~~~~~~-------~~~~~~~~~~~~Nv~gt~~ll~~a~~~------~-~r~v~iSS~~vy~~~ 237 (309)
..+| ++|||||..... ...++++..+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 161 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ-- 161 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS--
T ss_pred hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC--
Confidence 2478 999999975331 122357789999999999999998653 2 3799999988762
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCceeCC
Q 021681 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGP 292 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ivRp~~V~Gp 292 (309)
+..+...|+.+|++.+.+++.++.+. +++++.++||.|-.+
T Consensus 162 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 --------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred --------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc
Confidence 33345789999999999999998875 499999999998665
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=156.78 Aligned_cols=163 Identities=13% Similarity=0.004 Sum_probs=121.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEeccccccc-------------cC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~-------------~~ 179 (309)
+++|++|||||+|+||++++++|+++|++|++++|+.....+...+.. ...++.++.+|++++. +.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 82 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG 82 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999986432221111110 1246778899998761 45
Q ss_pred CCCEEEEccc--CC-------CCC--CCcCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCC
Q 021681 180 EVDQIYHLAC--PA-------SPV--HYKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQK 243 (309)
Q Consensus 180 ~~D~Vih~A~--~~-------~~~--~~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~ 243 (309)
.+|++||||| .. .+. ...++++..+++|+.++.++++++. +.+ .++|++||...+..
T Consensus 83 ~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 155 (260)
T 2qq5_A 83 RLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------- 155 (260)
T ss_dssp CCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC-------
T ss_pred CceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC-------
Confidence 6899999994 21 111 1223567889999999988887764 334 48999999876521
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+...|+.+|.+.+.+++.++.+ +|+++++++||.|.+|.
T Consensus 156 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 156 ----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 12368999999999999999865 48999999999998874
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=159.34 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=123.2
Q ss_pred CCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------------cC
Q 021681 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (309)
Q Consensus 114 ~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------------~~ 179 (309)
+++|+++|||| +|+||++++++|+++|++|++++|+.....+.+.+.+ ...+.++.+|++++. +.
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56789999999 9999999999999999999999986433212222222 235667889998761 23
Q ss_pred ---CCCEEEEcccCCCC-----CC----CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCC
Q 021681 180 ---EVDQIYHLACPASP-----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 180 ---~~D~Vih~A~~~~~-----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E 244 (309)
.+|++|||||.... .. ..+++...+++|+.|+.++++++.+. +.+||++||...++
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------- 154 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---------
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc---------
Confidence 79999999997541 11 12346788999999999999999764 24899999876432
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+. |++++.++||.|..+
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 197 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch
Confidence 1234689999999999999998774 899999999999775
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=152.56 Aligned_cols=150 Identities=12% Similarity=0.123 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
..+|+||||||+|+||++++++|+++| ++|++++|+...... .....++++.+|+.++ .+.++|+||||
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-----PYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-----SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-----cccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 457899999999999999999999999 899999986543322 1234788899999876 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
|+.. .. ...+.++++++++.+. +||++||..+|+........+. ......+...|. .+
T Consensus 96 a~~~-------~~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~ 154 (236)
T 3qvo_A 96 LTGE-------DL-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWN---NAVIGEPLKPFR----RA 154 (236)
T ss_dssp CCST-------TH-------HHHHHHHHHHHHHTTCCEEEEECCCCC-------------------CGGGHHHH----HH
T ss_pred CCCC-------ch-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccch---hhcccchHHHHH----HH
Confidence 9731 11 1346789999999886 8999999999976443222111 001222223343 34
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
|..+ ...+++++++|||.++++.
T Consensus 155 ~~~l----~~~gi~~~~vrPg~i~~~~ 177 (236)
T 3qvo_A 155 ADAI----EASGLEYTILRPAWLTDED 177 (236)
T ss_dssp HHHH----HTSCSEEEEEEECEEECCS
T ss_pred HHHH----HHCCCCEEEEeCCcccCCC
Confidence 4433 3579999999999999974
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=163.54 Aligned_cols=147 Identities=16% Similarity=0.249 Sum_probs=113.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc--cccCCCceEEEecccccc-----ccC--CCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEP-----ILL--EVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~--~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vi 185 (309)
.+|+|||||||||||++|+++|++.|++|++++|.......... ..+....++++.+|+.+. ++. ++|+||
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 88 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV 88 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence 35789999999999999999999999999999997533221111 112235788999999775 566 899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
|+|+. .|+.++.+++++|++.+ + +||+ | +||. ..+|. .+..+.+.|+.+|
T Consensus 89 ~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~-----~~~~p~~~y~~sK 140 (346)
T 3i6i_A 89 STVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRA-----DPVEPGLNMYREK 140 (346)
T ss_dssp ECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTC-----CCCTTHHHHHHHH
T ss_pred ECCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCcc-----CcCCCcchHHHHH
Confidence 99974 38899999999999999 7 5554 4 3442 23333 4556678999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
..+|.+++. .|++++++|||.++|..
T Consensus 141 ~~~e~~l~~----~g~~~tivrpg~~~g~~ 166 (346)
T 3i6i_A 141 RRVRQLVEE----SGIPFTYICCNSIASWP 166 (346)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEESSCC
T ss_pred HHHHHHHHH----cCCCEEEEEeccccccc
Confidence 999998865 68999999999999965
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=157.92 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=114.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC-----Ccc---cccccccC-CCceEEEecccccc------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT-----GRK---DNLVHHFR-NPRFELIRHDVVEP------ 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~-----~~~---~~~~~~~~-~~~v~~~~~Dl~~~------ 176 (309)
+.+++|+++||||+|+||++++++|+++|++|++.++... ... +.....+. .... ..+|+.+.
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~--~~~D~~~~~~~~~~ 82 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK--AVANYDSVEAGEKL 82 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE--EEEECCCGGGHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe--EEEeCCCHHHHHHH
Confidence 3467899999999999999999999999999999876321 011 11111111 1111 12455443
Q ss_pred ------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccc-cccCCCCC
Q 021681 177 ------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSE-VYGDPLEH 240 (309)
Q Consensus 177 ------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~-vy~~~~~~ 240 (309)
.+..+|++|||||......+ .++++..+++|+.|+.++++++. +.+ .+||++||.. .++.
T Consensus 83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~---- 158 (319)
T 1gz6_A 83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN---- 158 (319)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC----
Confidence 23479999999997544322 23577889999999999998873 344 4999999964 4432
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCce
Q 021681 241 PQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT 289 (309)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V 289 (309)
.+...|+.+|++.+.+++.++.+ .|+++++++||.+
T Consensus 159 -------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~ 197 (319)
T 1gz6_A 159 -------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG 197 (319)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc
Confidence 12468999999999999999877 4899999999987
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=154.88 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=104.7
Q ss_pred eEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+||||||+||||++++++|+++ |++|++++|....... + ....++++.+|+.++ .+.++|+|||+|+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~----~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA-L----AAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH-H----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh-h----hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4899999999999999999998 9999999986443221 1 123577888998775 56789999999974
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
. . ..|+.++.+++++|++.++ +||++||..+|. .+ ..|+.+|..+|.+
T Consensus 76 ~--------~----~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~sK~~~e~~ 124 (286)
T 2zcu_A 76 E--------V----GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT---------------SP----LGLADEHIETEKM 124 (286)
T ss_dssp ------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT---------------CC----STTHHHHHHHHHH
T ss_pred C--------c----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------Cc----chhHHHHHHHHHH
Confidence 1 0 1588999999999999887 899999988771 11 3699999999999
Q ss_pred HHHHHHhcCCcEEEEEeCceeCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
++. .+++++++||+.++++
T Consensus 125 ~~~----~~~~~~ilrp~~~~~~ 143 (286)
T 2zcu_A 125 LAD----SGIVYTLLRNGWYSEN 143 (286)
T ss_dssp HHH----HCSEEEEEEECCBHHH
T ss_pred HHH----cCCCeEEEeChHHhhh
Confidence 864 5899999999877664
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.51 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=103.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
|+||||||||+||++++++|++. |++|++++|+...... +....++++.+|+.++ ++.++|+|||||+.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~-----~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD-----DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG-----GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH-----hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 57999999999999999999998 8999999986543321 1235788999999876 57889999999975
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
... ...|+.++.+++++|++.++ +||++||.+.. . . .+. .+...+...|..
T Consensus 76 ~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~---~------~-----~~~----~~~~~~~~~e~~ 127 (289)
T 3e48_A 76 IHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQ---H------N-----NPF----HMSPYFGYASRL 127 (289)
T ss_dssp CCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCS---T------T-----CCS----TTHHHHHHHHHH
T ss_pred Ccc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCC---C------C-----CCC----ccchhHHHHHHH
Confidence 321 13589999999999999997 89999995421 0 1 111 111222233333
Q ss_pred HHHHHHhcCCcEEEEEeCceeCCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
+ .+.|++++++||+.+||+.
T Consensus 128 ~----~~~g~~~~ilrp~~~~~~~ 147 (289)
T 3e48_A 128 L----STSGIDYTYVRMAMYMDPL 147 (289)
T ss_dssp H----HHHCCEEEEEEECEESTTH
T ss_pred H----HHcCCCEEEEecccccccc
Confidence 3 3568999999999999973
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=150.69 Aligned_cols=166 Identities=14% Similarity=0.017 Sum_probs=115.9
Q ss_pred CCCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCC----------CCcccccccccCC---CceEEEec------
Q 021681 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFF----------TGRKDNLVHHFRN---PRFELIRH------ 171 (309)
Q Consensus 113 ~~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~----------~~~~~~~~~~~~~---~~v~~~~~------ 171 (309)
.+++|+++||||+ |+||++++++|+++|++|++++|+. ....+...+.... ........
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 3578899999999 9999999999999999999987531 0011111111000 00122222
Q ss_pred ------cccc--------c------------ccCCCCEEEEcccCCC--CCC----CcCChhHHHHHHHHHHHHHHHHHH
Q 021681 172 ------DVVE--------P------------ILLEVDQIYHLACPAS--PVH----YKYNPVKTIKTNVMGTLNMLGLAK 219 (309)
Q Consensus 172 ------Dl~~--------~------------~~~~~D~Vih~A~~~~--~~~----~~~~~~~~~~~Nv~gt~~ll~~a~ 219 (309)
|+++ + .+..+|++|||||... ... ..++++..+++|+.|+.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2211 1 1246999999998532 111 123577889999999999999997
Q ss_pred Hc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeC
Q 021681 220 RV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (309)
Q Consensus 220 ~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~G 291 (309)
+. +.++|++||...+.. .... ..|+.+|++.+.+++.++.+ +|++++.++||.|.+
T Consensus 165 ~~m~~~g~iv~isS~~~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T 228 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERI----------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHhccCceEEEEeccccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence 64 348999999765521 1122 47999999999999998865 589999999999999
Q ss_pred CCC
Q 021681 292 PRM 294 (309)
Q Consensus 292 p~~ 294 (309)
|..
T Consensus 229 ~~~ 231 (297)
T 1d7o_A 229 RAA 231 (297)
T ss_dssp CCS
T ss_pred chh
Confidence 864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=157.01 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=109.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecc-cccc-----ccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD-VVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~D-l~~~-----~~~~~D~Vih~A~ 189 (309)
+|+|+|||||||||++|+++|+++|++|++++|+...... ........++++.+| +.++ .+.++|+||||++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~--~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH--HHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 5789999999999999999999999999999986543210 111112467888999 8765 4678999999986
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccc--cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE--VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~--vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
... . +.|..+ .+++++|++.+ + +||++||.. .|+. .+.+.|+.+|..
T Consensus 83 ~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------------~~~~~y~~sK~~ 133 (352)
T 1xgk_A 83 SQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-----------------WPAVPMWAPKFT 133 (352)
T ss_dssp STT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------------CCCCTTTHHHHH
T ss_pred CCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------------CCCccHHHHHHH
Confidence 321 1 247777 99999999998 6 899999975 3321 122569999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+|++++. .+++++++||+ +||++.
T Consensus 134 ~E~~~~~----~gi~~~ivrpg-~~g~~~ 157 (352)
T 1xgk_A 134 VENYVRQ----LGLPSTFVYAG-IYNNNF 157 (352)
T ss_dssp HHHHHHT----SSSCEEEEEEC-EEGGGC
T ss_pred HHHHHHH----cCCCEEEEecc-eecCCc
Confidence 9999875 48999999987 688864
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=161.75 Aligned_cols=163 Identities=14% Similarity=0.007 Sum_probs=123.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+++||||+|+||.++++.|+++|++|+++++.... +.+........+.++.+|+++. .+.+
T Consensus 210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~--~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~ 287 (454)
T 3u0b_A 210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA--EDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGG 287 (454)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH--HHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999875321 1111111112456788999876 1234
Q ss_pred -CCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHc----C-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 -VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 -~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|+||||||+...... .++++..+++|+.|+.++.+++... + .+||++||...+.
T Consensus 288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~--------------- 352 (454)
T 3u0b_A 288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA--------------- 352 (454)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH---------------
T ss_pred CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC---------------
Confidence 9999999997654332 2356788999999999999999765 3 3899999976542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.+|.+.+.+++.++.+ .|++++.++||.|.++.
T Consensus 353 -g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 397 (454)
T 3u0b_A 353 -GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKM 397 (454)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC--
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChh
Confidence 1223468999999999999998866 48999999999998874
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=156.10 Aligned_cols=169 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCC-C-cccccccccC-C-C-ceEEEeccccccccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFT-G-RKDNLVHHFR-N-P-RFELIRHDVVEPILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~-~-~~~~~~~~~~-~-~-~v~~~~~Dl~~~~~~~~D~ 183 (309)
.|+|+||||+||||++++..|++.|+ +|+++++... . ......+... . . ..++...+...+.++++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 36899999999999999999999886 8999887531 0 0110111100 0 1 1123322333456789999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEeccc-cccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTSTSE-VYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS~~-vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
|||+||..... ..+....+++|+.++.++++++++.+ . +++++|+.. +.. +..++.. ....|.+.|
T Consensus 84 Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~---~~~~p~~~y 153 (327)
T 1y7t_A 84 ALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNA---PGLNPRNFT 153 (327)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTC---TTSCGGGEE
T ss_pred EEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHc---CCCChhhee
Confidence 99999865432 35677889999999999999999975 3 677776643 110 1111100 123455679
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+.||+..|++...+++..|+++.++|+++||||..
T Consensus 154 g~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 154 AMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred ccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 99999999999999988999999999999999964
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=149.98 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=108.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-ccccc--cccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLV--HHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~--~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
+|+|+||||||+||++++++|+++|++|++++|+.... .+... ..+....++++.+|+.++ ++.++|+|||+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 57899999999999999999999999999999875332 11110 111234678889998775 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEGKR 264 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~ 264 (309)
|+.... ..|+.++.+++++|++.+ + +||+ | +|+...... + .+..+ ...| .+|.
T Consensus 84 a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~------~~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 84 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM--E------HALQPGSITF-IDKR 139 (313)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC--C------CCCSSTTHHH-HHHH
T ss_pred Cccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc--c------cCCCCCcchH-HHHH
Confidence 975322 137788999999999998 7 6764 3 454322111 1 22223 3568 9999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 265 TAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 265 ~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
.+|.+++ +.+++++++||+.++|+
T Consensus 140 ~~e~~~~----~~g~~~~ilrp~~~~~~ 163 (313)
T 1qyd_A 140 KVRRAIE----AASIPYTYVSSNMFAGY 163 (313)
T ss_dssp HHHHHHH----HTTCCBCEEECCEEHHH
T ss_pred HHHHHHH----hcCCCeEEEEeceeccc
Confidence 9999875 35899999999998874
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=156.38 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=120.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcc--ccccccc--CCCceEEEecccccc-----ccC---
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEP-----ILL--- 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~-----~~~--- 179 (309)
...+++||||||+|+||.+++++|+++|++ |++++|+..... ..+...+ ....+.++.+|++++ .+.
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999995 888888653211 1111111 134688899999876 222
Q ss_pred ---CCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccc-ccCCCCCCCCCCCCCCC
Q 021681 180 ---EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV-YGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ---~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~v-y~~~~~~~~~E~~~~~~ 250 (309)
.+|+||||||....... .+++...+++|+.|+.++++++.+.+. +||++||... ++.
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~-------------- 368 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA-------------- 368 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC--------------
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCC--------------
Confidence 46999999997544322 224667889999999999999988765 8999999654 432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.....|+.+|...+.+.+.+. ..|+++++++||.+.++++
T Consensus 369 ---~g~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm 408 (486)
T 2fr1_A 369 ---PGLGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGM 408 (486)
T ss_dssp ---TTCTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC----
T ss_pred ---CCCHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcc
Confidence 123579999999999988764 4689999999999988754
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-17 Score=161.11 Aligned_cols=163 Identities=14% Similarity=-0.005 Sum_probs=108.4
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC---------CCCccccccccc-CCCceEEEecccccc-
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF---------FTGRKDNLVHHF-RNPRFELIRHDVVEP- 176 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~---------~~~~~~~~~~~~-~~~~v~~~~~Dl~~~- 176 (309)
.++...+++|+++||||+|+||++++++|+++|++|+++++. .........+.. ....+ .+|+.+.
T Consensus 11 ~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~d~~ 87 (613)
T 3oml_A 11 SDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYNSVI 87 (613)
T ss_dssp ----CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCE---EECCCCGG
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeCCHH
Confidence 344566889999999999999999999999999999998872 111111111110 01111 2344332
Q ss_pred -----------ccCCCCEEEEcccCCCCCCC----cCChhHHHHHHHHHHHHHHHHH----HHcCC-cEEEEeccccccC
Q 021681 177 -----------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGD 236 (309)
Q Consensus 177 -----------~~~~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-r~v~iSS~~vy~~ 236 (309)
.+..+|++|||||+.....+ .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 88 ~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~- 166 (613)
T 3oml_A 88 DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY- 166 (613)
T ss_dssp GHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH-
T ss_pred HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC-
Confidence 22469999999997654332 2357889999999999999987 33443 899999975542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCce
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNT 289 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V 289 (309)
+......|+.+|++.+.+++.++.+. ||+++.+.||.+
T Consensus 167 ---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 167 ---------------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA 207 (613)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--
T ss_pred ---------------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC
Confidence 12234689999999999999998774 899999999864
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=153.42 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=122.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc--ccccccc--CCCceEEEecccccc-----cc--CCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEP-----IL--LEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~-----~~--~~~ 181 (309)
..+++||||||+|+||.+++++|+++|+ +|++++|+..... ..+...+ ...++.++.+|+.+. .+ ..+
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l 336 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP 336 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999999 5888888643211 1111111 134688899999886 23 349
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccc-cccCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSE-VYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-~~-r~v~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|+||||||........ +.+...+++|+.|+.++.+++... +. +||++||.. +++. .
T Consensus 337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~-----------------~ 399 (511)
T 2z5l_A 337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN-----------------A 399 (511)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC-----------------T
T ss_pred cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC-----------------C
Confidence 9999999975443222 245678899999999999998766 54 899999974 4432 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
....|+.+|...+.+++.+. ..|+++++++||.+-+.++
T Consensus 400 g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm 438 (511)
T 2z5l_A 400 GQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGM 438 (511)
T ss_dssp TBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTC
T ss_pred CCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCcc
Confidence 23689999999999998764 5699999999998854443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=145.54 Aligned_cols=164 Identities=14% Similarity=0.029 Sum_probs=113.8
Q ss_pred CCCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCCC----------CcccccccccCCC---ceEEE--------
Q 021681 113 GRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFT----------GRKDNLVHHFRNP---RFELI-------- 169 (309)
Q Consensus 113 ~~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~~----------~~~~~~~~~~~~~---~v~~~-------- 169 (309)
.+++|+++|||| +|+||++++++|+++|++|++++|+.. ...+...+..... ....+
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 357889999999 899999999999999999999886320 0000011100000 01122
Q ss_pred ----eccccc--------c------------ccCCCCEEEEcccCCC--CCCC----cCChhHHHHHHHHHHHHHHHHHH
Q 021681 170 ----RHDVVE--------P------------ILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAK 219 (309)
Q Consensus 170 ----~~Dl~~--------~------------~~~~~D~Vih~A~~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~ 219 (309)
.+|+++ + .+..+|++|||||... ...+ .+++...+++|+.|+.++++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 223332 1 1246999999998642 1111 23567889999999999999986
Q ss_pred Hc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeC
Q 021681 220 RV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (309)
Q Consensus 220 ~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~G 291 (309)
+. +.+||++||...+.. .... ..|+.+|++.+.+++.++.+ +||+++.|+||.|..
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T 229 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERV----------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSC----------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHhcCCEEEEEeccccccc----------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence 54 348999999876521 1122 46999999999999998765 589999999999976
Q ss_pred C
Q 021681 292 P 292 (309)
Q Consensus 292 p 292 (309)
+
T Consensus 230 ~ 230 (315)
T 2o2s_A 230 R 230 (315)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=145.38 Aligned_cols=145 Identities=18% Similarity=0.258 Sum_probs=104.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC-CCcc--cccc--cccCCCceEEEecccccc-----ccCCCCEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRK--DNLV--HHFRNPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~-~~~~--~~~~--~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
+|+|+||||||+||++++++|+++|++|++++|+. .... +... ..+....++++.+|+.++ ++.++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999999875 1110 1110 011224578889998775 567899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEG 262 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~s 262 (309)
|+|+... +.++.+++++|++.+ + +||+ | +||... +|. .+..| .+.| .+
T Consensus 82 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~s 132 (307)
T 2gas_A 82 CAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRH-----DAVEPVRQVF-EE 132 (307)
T ss_dssp ECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSC-----CCCTTHHHHH-HH
T ss_pred ECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccc-----cCCCcchhHH-HH
Confidence 9997432 456789999999998 6 6662 3 344211 121 22233 3578 99
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
|..+|.+++. .+++++++||+.++++.
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~ 159 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYF 159 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTT
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeeccc
Confidence 9999988754 58999999999988853
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.69 E-value=8e-17 Score=146.61 Aligned_cols=165 Identities=12% Similarity=-0.003 Sum_probs=101.1
Q ss_pred CCCCCeEEEEcC--CchhHHHHHHHHHHCCCeEEEEecCC-----------CCccc----------ccccccCCC-----
Q 021681 113 GRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFF-----------TGRKD----------NLVHHFRNP----- 164 (309)
Q Consensus 113 ~~~~k~VlITGa--tG~IG~~l~~~Ll~~g~~V~~i~r~~-----------~~~~~----------~~~~~~~~~----- 164 (309)
.+++|++||||| +|+||++++++|+++|++|++++|+. ....+ .....+...
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 357889999999 89999999999999999999987531 00000 000000000
Q ss_pred ceEEEec------------cccc-------------c-------ccCCCCEEEEcccCCC--CCC----CcCChhHHHHH
Q 021681 165 RFELIRH------------DVVE-------------P-------ILLEVDQIYHLACPAS--PVH----YKYNPVKTIKT 206 (309)
Q Consensus 165 ~v~~~~~------------Dl~~-------------~-------~~~~~D~Vih~A~~~~--~~~----~~~~~~~~~~~ 206 (309)
....+.. |+++ . .+..+|++|||||... ... ..+++...+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 0122222 2222 1 1246999999998642 111 12346788999
Q ss_pred HHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHh----cC
Q 021681 207 NVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRG----AG 278 (309)
Q Consensus 207 Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~a~~----~g 278 (309)
|+.|+.++++++.+. +.+||++||...+. +.... ..|+.+|++.+.+++.++.+ +|
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~g 229 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEK----------------VIPGYGGGMSSAKAALESDCRTLAFEAGRARA 229 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEecccccc----------------ccCccchhhHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999998764 35899999976542 11122 47999999999999998865 58
Q ss_pred CcEEEEEeCceeCCC
Q 021681 279 VEVRIARIFNTYGPR 293 (309)
Q Consensus 279 i~~~ivRp~~V~Gp~ 293 (309)
|+++.|+||.|..+-
T Consensus 230 Irvn~v~PG~v~T~~ 244 (319)
T 2ptg_A 230 VRVNCISAGPLKSRA 244 (319)
T ss_dssp CEEEEEEECCCC---
T ss_pred eeEEEEeeCCccChh
Confidence 999999999998763
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-16 Score=149.94 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=122.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc--ccccccc--CCCceEEEeccccccc-----c------
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DNLVHHF--RNPRFELIRHDVVEPI-----L------ 178 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~--~~~~~~~--~~~~v~~~~~Dl~~~~-----~------ 178 (309)
.++++|||||+|+||.++++.|+++|+ +|+++.|...... ..+...+ ...++.++.+|++++. +
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 348999999999999999999999998 7788777532211 1111111 2357888999998861 1
Q ss_pred CCCCEEEEcccCC-CCCCCc----CChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPA-SPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 179 ~~~D~Vih~A~~~-~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
..+|+||||||+. ...... +++...+++|+.|+.++.+++.+.+. +||++||...+- .
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~----------------g 381 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW----------------G 381 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------T
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC----------------C
Confidence 2589999999975 222222 24678899999999999999988765 899999965441 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
......|+.+|...+.+++.+. ..|+++++|.||.+.++++.
T Consensus 382 ~~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~ 423 (496)
T 3mje_A 382 SGGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMA 423 (496)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-
T ss_pred CCCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccc
Confidence 1234689999999999998764 56999999999999887764
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=140.30 Aligned_cols=162 Identities=7% Similarity=-0.002 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCC---------CCc---cccccc-ccCCCceEEEecccccc---
Q 021681 115 RRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFF---------TGR---KDNLVH-HFRNPRFELIRHDVVEP--- 176 (309)
Q Consensus 115 ~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~---------~~~---~~~~~~-~~~~~~v~~~~~Dl~~~--- 176 (309)
++|+++||||++ +||.+++++|+++|++|++.++.. ... ...... ......+.++.+|+.+.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 367999999875 999999999999999999776442 111 111110 11123356666666543
Q ss_pred -----------------------------ccCCCCEEEEcccCCC--CCCC----cCChhHHHHHHHHHHHHHHHHHHHc
Q 021681 177 -----------------------------ILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV 221 (309)
Q Consensus 177 -----------------------------~~~~~D~Vih~A~~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (309)
.+..+|++|||||+.. ...+ .+++...+++|+.|+.++++++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1235899999999632 1111 2257889999999999999998654
Q ss_pred ---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeCC
Q 021681 222 ---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS-CYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 222 ---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~Gp 292 (309)
+.+||++||...+. +..... .|+.||++.+.+++.++.+ +|++++.+.||.|..+
T Consensus 161 m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQK----------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 24899999977552 222233 7999999999999988765 4899999999999765
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-17 Score=147.34 Aligned_cols=145 Identities=17% Similarity=0.267 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC-CCcc-cccc--cccCCCceEEEecccccc-----ccCCCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRK-DNLV--HHFRNPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~-~~~~-~~~~--~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
++|+|+||||||+||++++++|+++|++|++++|+. .... +... ..+....++++.+|+.++ ++.++|+||
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 467899999999999999999999999999999875 2110 1100 011224678899999775 567899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEG 262 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~s 262 (309)
|+|+.. ++.++.+++++|++.+ + +|| .| +|+... +|. .+..+ .+.| .+
T Consensus 83 ~~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v-~S---~~g~~~----~~~-----~~~~p~~~~y-~s 133 (321)
T 3c1o_A 83 SALPFP---------------MISSQIHIINAIKAAGNIKRFL-PS---DFGCEE----DRI-----KPLPPFESVL-EK 133 (321)
T ss_dssp ECCCGG---------------GSGGGHHHHHHHHHHCCCCEEE-CS---CCSSCG----GGC-----CCCHHHHHHH-HH
T ss_pred ECCCcc---------------chhhHHHHHHHHHHhCCccEEe-cc---ccccCc----ccc-----ccCCCcchHH-HH
Confidence 999742 1566889999999998 7 676 22 344211 221 22222 3579 99
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
|..+|.+++. .+++++++||+.++|+
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~ 159 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAY 159 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceeccc
Confidence 9999998864 5899999999988774
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=143.00 Aligned_cols=144 Identities=17% Similarity=0.343 Sum_probs=104.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc--cccc--ccccCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--KDNL--VHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~--~~~~--~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
+|+|+||||||+||++++++|+++|++|++++|..... .+.. ...+....++++.+|+.++ +++++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999999999875432 1111 0111235678899999775 5678999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEGK 263 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK 263 (309)
+|+.. ++.++.+++++|++.+ + +||+ |+ ||... +|. .+..| ...| .+|
T Consensus 84 ~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~~~-----~~~~p~~~~y-~sK 134 (308)
T 1qyc_A 84 TVGSL---------------QIESQVNIIKAIKEVGTVKRFFP-SE---FGNDV----DNV-----HAVEPAKSVF-EVK 134 (308)
T ss_dssp CCCGG---------------GSGGGHHHHHHHHHHCCCSEEEC-SC---CSSCT----TSC-----CCCTTHHHHH-HHH
T ss_pred CCcch---------------hhhhHHHHHHHHHhcCCCceEee-cc---cccCc----ccc-----ccCCcchhHH-HHH
Confidence 99742 1456789999999998 6 6663 43 44211 121 22233 3568 999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
..+|.+++. .+++++++||+.++|+
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~ 159 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGY 159 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHH
T ss_pred HHHHHHHHh----cCCCeEEEEeceeccc
Confidence 999988764 5899999999998875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=143.65 Aligned_cols=142 Identities=18% Similarity=0.299 Sum_probs=102.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~~ 190 (309)
+++|+||||||+||++++++|+++|++|++++|+.......+.. +....++++.+|+.++ +++++|+|||+|+.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDE-FQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHH-hhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 35899999999999999999999999999999875422211111 1224578899999775 56789999999974
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-RSCYDEGKRTAE 267 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~~~E 267 (309)
. ++.++.+++++|++.+ + +||+ | +|+... +|. .+..+ ...| .+|..+|
T Consensus 90 ~---------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 90 P---------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRI-----NALPPFEALI-ERKRMIR 140 (318)
T ss_dssp G---------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTC-----CCCHHHHHHH-HHHHHHH
T ss_pred h---------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----ccc-----cCCCCcchhH-HHHHHHH
Confidence 2 1456789999999998 6 6663 3 344211 121 22222 2468 9999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
.+++. .+++++++||+.+++
T Consensus 141 ~~~~~----~~~~~~~lr~~~~~~ 160 (318)
T 2r6j_A 141 RAIEE----ANIPYTYVSANCFAS 160 (318)
T ss_dssp HHHHH----TTCCBEEEECCEEHH
T ss_pred HHHHh----cCCCeEEEEcceehh
Confidence 88754 689999999988776
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-16 Score=148.71 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=119.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEE-ecCCCC------------ccccccccc--CCCceEEEecccccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVI-DNFFTG------------RKDNLVHHF--RNPRFELIRHDVVEP 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i-~r~~~~------------~~~~~~~~~--~~~~v~~~~~Dl~~~ 176 (309)
...++++|||||+|+||.++++.|+++|++ |+++ .|+... ..+.+...+ ....+.++.+|+++.
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDA 327 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCH
Confidence 457789999999999999999999999997 5555 665321 111111111 135688899999886
Q ss_pred c-----------cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcC-----C-cEEEEecccccc
Q 021681 177 I-----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG-----A-KFLLTSTSEVYG 235 (309)
Q Consensus 177 ~-----------~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~-----~-r~v~iSS~~vy~ 235 (309)
. +..+|+||||||+....... +++..++++|+.|+.++.+++.... . +||++||...+-
T Consensus 328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT
T ss_pred HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC
Confidence 1 23589999999975543322 2467889999999999999987654 3 799999976542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.......|+.+|...+.+++++. ..|+++++|.||.+ +.++
T Consensus 408 ----------------g~~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm 448 (525)
T 3qp9_A 408 ----------------GGAGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSR 448 (525)
T ss_dssp ----------------CCTTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSG
T ss_pred ----------------CCCCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-cccc
Confidence 12234689999999999876653 45899999999998 4443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=146.44 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=116.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEeccc-ccc---------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDV-VEP---------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl-~~~---------~~~~ 180 (309)
.+++|+++||||+++||++++++|+++|++|++.++.. . +...+.+ ....+..+.+|+ .+. .+..
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~-~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--A-TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--C-HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--H-HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999999999987521 1 1111111 123455667787 332 2457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||+.....+. ++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~---------------- 459 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY---------------- 459 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------------
Confidence 99999999975433322 35788999999999999888743 33 4899999975441
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCc
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFN 288 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~ 288 (309)
+......|+.||++...+.+.++.+ +||+++.|.||.
T Consensus 460 ~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~ 499 (604)
T 2et6_A 460 GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA 499 (604)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC
Confidence 1112367999999999999999877 489999999983
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=134.28 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=119.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCcccc-----------cccc--cCCCceEEEecccccc---
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDN-----------LVHH--FRNPRFELIRHDVVEP--- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~-----------~~~~--~~~~~v~~~~~Dl~~~--- 176 (309)
..+|++|||||+++||.++++.|++ .|++|+++++........ .... .....+..+.+|++++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4678999999999999999999999 999999998764432211 1111 1234677889999876
Q ss_pred ---------ccCCCCEEEEcccCC---------------CCC-----------------------CCcCChhHHHHHHHH
Q 021681 177 ---------ILLEVDQIYHLACPA---------------SPV-----------------------HYKYNPVKTIKTNVM 209 (309)
Q Consensus 177 ---------~~~~~D~Vih~A~~~---------------~~~-----------------------~~~~~~~~~~~~Nv~ 209 (309)
.+..+|++|||||.. .+. ...++++.++++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 345799999999863 111 112357788899988
Q ss_pred HHH-HHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---c-CC
Q 021681 210 GTL-NMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---A-GV 279 (309)
Q Consensus 210 gt~-~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~-gi 279 (309)
++. .+++++... +.++|++||....-. .+......|+.+|.+.+.+++.++.+ . |+
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~--------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GI 270 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT--------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGG 270 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCe
Confidence 876 566665432 348999999764311 12112268999999999999999877 4 89
Q ss_pred cEEEEEeCceeCC
Q 021681 280 EVRIARIFNTYGP 292 (309)
Q Consensus 280 ~~~ivRp~~V~Gp 292 (309)
+++++.||.|-.+
T Consensus 271 RVNaVaPG~i~T~ 283 (405)
T 3zu3_A 271 DARVSVLKAVVSQ 283 (405)
T ss_dssp EEEEEECCCCCCH
T ss_pred EEEEEEeCCCcCc
Confidence 9999999998775
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=144.55 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=110.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC--------CcccccccccC--CCceEEEeccccc-------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT--------GRKDNLVHHFR--NPRFELIRHDVVE------- 175 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~--------~~~~~~~~~~~--~~~v~~~~~Dl~~------- 175 (309)
.+++|+++||||+++||++++++|+++|++|++.++... ...+...+.+. .........|+.+
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~ 84 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVET 84 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHH
Confidence 357899999999999999999999999999999887531 11111111111 1112111122211
Q ss_pred --cccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCC
Q 021681 176 --PILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKE 244 (309)
Q Consensus 176 --~~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E 244 (309)
..+..+|++|||||+.....+. ++++.++++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 85 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~--------- 155 (604)
T 2et6_A 85 AVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY--------- 155 (604)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC---------
Confidence 1345799999999975433222 3578899999999999988864 334 4899999965431
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeC
Q 021681 245 TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIF 287 (309)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~ 287 (309)
+......|+.||++.+.+.+.++.+ +||+++.|.|+
T Consensus 156 -------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg 194 (604)
T 2et6_A 156 -------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL 194 (604)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence 1112357999999999999999877 48999999997
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=137.44 Aligned_cols=166 Identities=13% Similarity=0.008 Sum_probs=119.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCcccc-----------cccc--cCCCceEEEecccccc----
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDN-----------LVHH--FRNPRFELIRHDVVEP---- 176 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~-----------~~~~--~~~~~v~~~~~Dl~~~---- 176 (309)
.+|++|||||+++||.++++.|++ .|++|+++++........ ..+. .....+..+.+|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 478999999999999999999999 999999998865443321 0011 1234577889999876
Q ss_pred --------cc-CCCCEEEEcccCC-------------C--CC-----------------------CCcCChhHHHHHHHH
Q 021681 177 --------IL-LEVDQIYHLACPA-------------S--PV-----------------------HYKYNPVKTIKTNVM 209 (309)
Q Consensus 177 --------~~-~~~D~Vih~A~~~-------------~--~~-----------------------~~~~~~~~~~~~Nv~ 209 (309)
.+ ..+|++|||||.. . +. ...++++.++++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 35 6799999999852 1 11 012246677777777
Q ss_pred HHH-HHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCc
Q 021681 210 GTL-NMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVE 280 (309)
Q Consensus 210 gt~-~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~ 280 (309)
++. .+++++... +.++|++||....-. .+......|+.||.+.+.+.+.++.+ +||+
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~--------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR 285 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEIT--------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG 285 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG--------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence 765 666666443 348999999764311 11111257999999999999999877 4899
Q ss_pred EEEEEeCceeCCCC
Q 021681 281 VRIARIFNTYGPRM 294 (309)
Q Consensus 281 ~~ivRp~~V~Gp~~ 294 (309)
++++.||.|-.|-.
T Consensus 286 VNaVaPG~i~T~~~ 299 (422)
T 3s8m_A 286 ANVAVLKSVVTQAS 299 (422)
T ss_dssp EEEEEECCCCCTTG
T ss_pred EEEEEcCCCcChhh
Confidence 99999999988743
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=149.85 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=119.9
Q ss_pred cCCCCCeEEEEcCCch-hHHHHHHHHHHCCCeEEEEe-cCCCCccc---ccccccC--CCceEEEecccccc--------
Q 021681 112 IGRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVID-NFFTGRKD---NLVHHFR--NPRFELIRHDVVEP-------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~-IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~---~~~~~~~--~~~v~~~~~Dl~~~-------- 176 (309)
+.+++|++|||||+|+ ||.++++.|++.|++|++++ ++.....+ .+..... ...+.++.+|+.+.
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~ 750 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 750 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence 3467899999999998 99999999999999999985 43322211 1111111 34678889999876
Q ss_pred ----c-----cC-CCCEEEEcccCCCCC-CC------cCChhHHHHHHHHHHHHHHHHHHHc------C-CcEEEEeccc
Q 021681 177 ----I-----LL-EVDQIYHLACPASPV-HY------KYNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSE 232 (309)
Q Consensus 177 ----~-----~~-~~D~Vih~A~~~~~~-~~------~~~~~~~~~~Nv~gt~~ll~~a~~~------~-~r~v~iSS~~ 232 (309)
. +. .+|++|||||+.... .+ .+++..++++|+.|+.+++++++.. + .+||++||..
T Consensus 751 ~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a 830 (1887)
T 2uv8_A 751 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 830 (1887)
T ss_dssp HHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence 1 22 699999999975443 22 2346788999999999999987432 1 3799999976
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHhcC--CcEEEEEeCceeCC
Q 021681 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL-TMDYHRGAG--VEVRIARIFNTYGP 292 (309)
Q Consensus 233 vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~-v~~~a~~~g--i~~~ivRp~~V~Gp 292 (309)
.+.. ....|+.||++.+.+ .+.++.+.+ |+++.+.||.|.|.
T Consensus 831 g~~g------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT 875 (1887)
T 2uv8_A 831 GTFG------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 875 (1887)
T ss_dssp TCSS------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC
T ss_pred hccC------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 4411 235799999999998 777766543 99999999999953
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=127.93 Aligned_cols=165 Identities=8% Similarity=-0.092 Sum_probs=116.9
Q ss_pred CCCCeEEEEcCCchhHHH--HHHHHHHCCCeEEEEecCCCCccc-----------ccccc--cCCCceEEEecccccc--
Q 021681 114 RRRLRIVVTGGAGFVGSH--LVDKLIDRGDEVIVIDNFFTGRKD-----------NLVHH--FRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~--l~~~Ll~~g~~V~~i~r~~~~~~~-----------~~~~~--~~~~~v~~~~~Dl~~~-- 176 (309)
..+|++|||||+++||.+ +++.|++.|++|+++++....... .+.+. .....+..+.+|++++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 467899999999999999 999999999999999886443221 11111 1234677889999876
Q ss_pred ----------ccCCCCEEEEcccCC-------------C--CC-----------------------CCcCChhHHHHHHH
Q 021681 177 ----------ILLEVDQIYHLACPA-------------S--PV-----------------------HYKYNPVKTIKTNV 208 (309)
Q Consensus 177 ----------~~~~~D~Vih~A~~~-------------~--~~-----------------------~~~~~~~~~~~~Nv 208 (309)
.+..+|++|||||.. . +. ...+++..++++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 235699999999863 0 11 01224566777777
Q ss_pred HHHH-HHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cC
Q 021681 209 MGTL-NMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG----AG 278 (309)
Q Consensus 209 ~gt~-~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~g 278 (309)
.+.. .+++.+... +.++|.+||....-. .+......|+.+|++.+.+++.++.+ .|
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 6665 556665443 247999999754310 12222278999999999999999866 58
Q ss_pred CcEEEEEeCceeCC
Q 021681 279 VEVRIARIFNTYGP 292 (309)
Q Consensus 279 i~~~ivRp~~V~Gp 292 (309)
++++++.||.|-.+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999999775
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=149.04 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=117.7
Q ss_pred cCCCCCeEEEEcCCch-hHHHHHHHHHHCCCeEEEEe-cCCCCcccccccc---cC--CCceEEEecccccc--------
Q 021681 112 IGRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH---FR--NPRFELIRHDVVEP-------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~-IG~~l~~~Ll~~g~~V~~i~-r~~~~~~~~~~~~---~~--~~~v~~~~~Dl~~~-------- 176 (309)
+.+++|++|||||+|+ ||.+++++|+++|++|++++ |+.....+...+. .. ...+.++.+|+.+.
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe 551 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 551 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 3467899999999998 99999999999999999984 4433222211111 11 34678889999776
Q ss_pred ----c-----cC-CCCEEEEcccCCCCC-CC------cCChhHHHHHHHHHHHHHHHHHHH--c----C-CcEEEEeccc
Q 021681 177 ----I-----LL-EVDQIYHLACPASPV-HY------KYNPVKTIKTNVMGTLNMLGLAKR--V----G-AKFLLTSTSE 232 (309)
Q Consensus 177 ----~-----~~-~~D~Vih~A~~~~~~-~~------~~~~~~~~~~Nv~gt~~ll~~a~~--~----~-~r~v~iSS~~ 232 (309)
. +. .+|++|||||+.... .+ .+++...+++|+.|+.+++++++. . + .+||++||..
T Consensus 552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA 631 (1688)
T 2pff_A 552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 631 (1688)
T ss_dssp HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence 1 22 699999999975443 22 234678899999999999998732 2 1 3799999975
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHhcC--CcEEEEEeCceeCC
Q 021681 233 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL-TMDYHRGAG--VEVRIARIFNTYGP 292 (309)
Q Consensus 233 vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~-v~~~a~~~g--i~~~ivRp~~V~Gp 292 (309)
.+. + ....|+.||++.+.+ .+.++.+.+ |+++.|.||.|.|.
T Consensus 632 G~~----------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 632 GTF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 676 (1688)
T ss_dssp TTS----------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCC
T ss_pred hcc----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCC
Confidence 431 1 235799999999998 555554433 89999999999853
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=145.21 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=116.0
Q ss_pred CCCCCeEEEEcCCch-hHHHHHHHHHHCCCeEEEEecC-CCCccc---ccccccC--CCceEEEecccccc---------
Q 021681 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVIDNF-FTGRKD---NLVHHFR--NPRFELIRHDVVEP--------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~-IG~~l~~~Ll~~g~~V~~i~r~-~~~~~~---~~~~~~~--~~~v~~~~~Dl~~~--------- 176 (309)
.+++|++|||||+|+ ||.++++.|+++|++|+++++. .....+ .+...+. ...+.++.+|+.+.
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467899999999999 9999999999999999998643 222111 1111111 34678899999876
Q ss_pred ---c---cC-CCCEEEEcccCCCCC-CCc------CChhHHHHHHHHHHHHHHHHHH--Hc----C-CcEEEEecccccc
Q 021681 177 ---I---LL-EVDQIYHLACPASPV-HYK------YNPVKTIKTNVMGTLNMLGLAK--RV----G-AKFLLTSTSEVYG 235 (309)
Q Consensus 177 ---~---~~-~~D~Vih~A~~~~~~-~~~------~~~~~~~~~Nv~gt~~ll~~a~--~~----~-~r~v~iSS~~vy~ 235 (309)
. +. .+|+||||||+.... .+. +++..++++|+.|+.+++++++ .. + .+||++||...+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 1 33 699999999975443 221 3467889999999999987742 21 2 3799999975431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-c--CCcEEEEEeCcee
Q 021681 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG-A--GVEVRIARIFNTY 290 (309)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-~--gi~~~ivRp~~V~ 290 (309)
. ....|+.+|++.+.+++.++.+ . .|+++.|.||.+-
T Consensus 809 g------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~ 848 (1878)
T 2uv9_A 809 G------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTR 848 (1878)
T ss_dssp S------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBC
T ss_pred C------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccee
Confidence 1 1357999999999998765433 2 3999999999998
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=138.74 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=121.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHH-HCCC-eEEEEecCCCCcc---cccccc-cCCCceEEEeccccccc-----c---
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLI-DRGD-EVIVIDNFFTGRK---DNLVHH-FRNPRFELIRHDVVEPI-----L--- 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll-~~g~-~V~~i~r~~~~~~---~~~~~~-~~~~~v~~~~~Dl~~~~-----~--- 178 (309)
...+++++||||+|+||.++++.|+ ++|+ +|++++|+..... +...+. ....++.++.+|++++. +
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3568899999999999999999999 7898 5888888633221 111111 12457888999998761 1
Q ss_pred ---CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 179 ---LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 179 ---~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
..+|+||||||+.....+. ++++..+++|+.|+.++.+++...- +||++||...+-.
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-~iV~~SS~ag~~g--------------- 670 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-ALVLFSSVSGVLG--------------- 670 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-EEEEEEETHHHHT---------------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-EEEEEccHHhcCC---------------
Confidence 1589999999976543332 3578889999999999999883322 8999999754421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|...+.+.+++. ..|++++.|.||.+-+++
T Consensus 671 -~~g~~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g 710 (795)
T 3slk_A 671 -SGGQGNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHG 710 (795)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcch
Confidence 1223679999999998888765 469999999999887654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=133.93 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=113.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcc---cccccc-cCCCceEEEecccccc-----------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRK---DNLVHH-FRNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~---~~~~~~-~~~~~v~~~~~Dl~~~----------- 176 (309)
...+|+++||||+|+||.++++.|+++|++ |++++|+..... +...+. ....++..+.+|+++.
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999996 777777644321 111111 1234677888999876
Q ss_pred ccCCCCEEEEcccCCCCCC----CcCChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+..+|+||||||...... ..++++..+++|+.|+.++.+++...- .+||++||....-.
T Consensus 1961 ~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g------------- 2027 (2512)
T 2vz8_A 1961 QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRG------------- 2027 (2512)
T ss_dssp HHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTT-------------
T ss_pred hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCC-------------
Confidence 1346999999999653322 234678889999999999988876542 38999999754421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|.+.+.+++... ..|++...+..|.+-+.
T Consensus 2028 ---~~g~~~Y~aaKaal~~l~~~rr-~~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2028 ---NAGQANYGFANSAMERICEKRR-HDGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHH-HTTSCCCEEEECCBCTT
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHH-HCCCcEEEEEccCcCCc
Confidence 1123679999999999998754 45899988888766443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-11 Score=131.18 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=112.2
Q ss_pred CCCCCeEEEEcCCch-hHHHHHHHHHHCCCeEEEEecCCCCc----cccccccc--CCCceEEEecccccc---------
Q 021681 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVIDNFFTGR----KDNLVHHF--RNPRFELIRHDVVEP--------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~-IG~~l~~~Ll~~g~~V~~i~r~~~~~----~~~~~~~~--~~~~v~~~~~Dl~~~--------- 176 (309)
.+++|++|||||+++ ||.++++.|++.|++|++.+++.... .+.+...+ ....+..+.+|++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 378999999999999 99999999999999999999865431 11111111 124567788998765
Q ss_pred -------ccCCCCEEEEcccC----CCC--C---CCcCChh----HHHHHHHHHHHHHHHHHHHc----CC--c--EEEE
Q 021681 177 -------ILLEVDQIYHLACP----ASP--V---HYKYNPV----KTIKTNVMGTLNMLGLAKRV----GA--K--FLLT 228 (309)
Q Consensus 177 -------~~~~~D~Vih~A~~----~~~--~---~~~~~~~----~~~~~Nv~gt~~ll~~a~~~----~~--r--~v~i 228 (309)
.+..+|++|||||. ... . ...+++. ..+++|+.++..+++.+.+. +. + ++..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 13459999999996 110 0 0112343 34899999999988876542 21 1 2222
Q ss_pred eccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh--c--CCcEEEEEeCceeCCC
Q 021681 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG--A--GVEVRIARIFNTYGPR 293 (309)
Q Consensus 229 SS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~--~--gi~~~ivRp~~V~Gp~ 293 (309)
.|.. .+ .......|+.||++.+.+++.++.+ . +++++.+.||.|-+..
T Consensus 2293 ~ss~-~g----------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~ 2344 (3089)
T 3zen_D 2293 GSPN-RG----------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTG 2344 (3089)
T ss_dssp ECSS-TT----------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECST
T ss_pred CCcc-cc----------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCc
Confidence 2211 11 1112246999999999999999988 3 5899999999998654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=106.19 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=105.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecC----CCCcccc---cccccCCCceEEEeccccccccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNF----FTGRKDN---LVHHFRNPRFELIRHDVVEPILLEV 181 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~----~~~~~~~---~~~~~~~~~v~~~~~Dl~~~~~~~~ 181 (309)
.|+|+||||+||+|++++..|+..|. +|+++|+. ....... +.+.......++...+-..++++++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 46899999999999999999998875 78888875 2111111 1111001112222222234578899
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C--cEEEEeccc-c--ccCCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTSTSE-V--YGDPLEHPQKETYWGNVNPIGE 255 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--r~v~iSS~~-v--y~~~~~~~~~E~~~~~~~~~~~ 255 (309)
|+|||+||.... ...+....+..|+.++.++++.+.+.+ . +++++|.-. + |--... . ..+.+
T Consensus 85 D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~-----~-----~~~p~ 152 (329)
T 1b8p_A 85 DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKS-----A-----PSLPA 152 (329)
T ss_dssp SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHT-----C-----TTSCG
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHH-----c-----CCCCH
Confidence 999999985332 234566788999999999999999984 4 677777521 1 100000 0 01111
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
...|+.++.....+...+++..|++...++...|+|.
T Consensus 153 ~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 153 KNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred HHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 2346667777777777788888888777876677884
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=95.88 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=77.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccc---cccccCCCceEEEec-cccccccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDN---LVHHFRNPRFELIRH-DVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~-Dl~~~~~~~~D~Vih~A~ 189 (309)
.|+|+||||+|++|..++..|+..| .+|+++++... ... +.+......+..+.. +-..++++++|+|||+||
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 4689999999999999999999988 78999886543 111 111111112222211 122356899999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS 231 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~ 231 (309)
..... .......+..|+.++.++++.+.+.+. .+|+++|.
T Consensus 86 ~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 86 VPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred cCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 53322 233456688999999999999999876 67777774
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=94.17 Aligned_cols=165 Identities=12% Similarity=0.077 Sum_probs=100.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEec--CCCCccc---cccc--ccCCCceEEEecc-ccccccCCCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDN--FFTGRKD---NLVH--HFRNPRFELIRHD-VVEPILLEVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r--~~~~~~~---~~~~--~~~~~~v~~~~~D-l~~~~~~~~D~Vih 186 (309)
|+|+||||+|++|+.++..|+..+. ++.++++ ....... .+.+ .+....+++...+ -..++++++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 5899999999999999999998875 5777776 3211111 0111 1111234444433 34667899999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE-GKRT 265 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~-sK~~ 265 (309)
+||... .........+..|+.++.++++++++.+.++++++|.-+.-...- .... ..+.+...+|. +..-
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SNPv~~~t~~-~~k~------~~~p~~rviG~gt~LD 151 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDVMTYK-ALVD------SKFERNQVFGLGTHLD 151 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSSHHHHHHH-HHHH------HCCCTTSEEECTTHHH
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCcHHHHHHH-HHHh------hCcChhcEEEeCccHH
Confidence 998532 223445677899999999999999988744777777543210000 0000 01222234454 4444
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYG 291 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~G 291 (309)
...+...+++..|++...++. .|+|
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 555556666666776555554 5565
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-09 Score=92.76 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=77.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEec--CCCCccc---cccccc-CCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDN--FFTGRKD---NLVHHF-RNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r--~~~~~~~---~~~~~~-~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|+||||+|++|+.++..|+..+. +++++|+ .....+. .+.+.. ....+.+...| .+.++++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 5899999999999999999998875 6777776 3321111 111110 11233444333 56789999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccc
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE 232 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~ 232 (309)
+.... ........+..|+.++.++++.+.+.+. .+++++|.-
T Consensus 79 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP 121 (303)
T 1o6z_A 79 GIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (303)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 85322 2234556789999999999999999876 677777743
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=79.49 Aligned_cols=92 Identities=22% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
.+|+|+|+|+ |++|+.+++.|++.| ++|++++++...... . ....+..+..|+.+. .+.++|+|||++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~-~----~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAV-L----NRMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHH-H----HTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHH-H----HhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 4579999999 999999999999999 899999985432221 1 123456677777653 567899999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS 230 (309)
+.. .+..+++++.+.+++++.+++
T Consensus 78 ~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 78 PFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp CGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred Cch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 521 135788899999887665554
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-08 Score=87.93 Aligned_cols=164 Identities=10% Similarity=-0.027 Sum_probs=99.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHH-HCCCeEEEEecCCCCcccccc-----------cc--cCCCceEEEecccccc---
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLV-----------HH--FRNPRFELIRHDVVEP--- 176 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll-~~g~~V~~i~r~~~~~~~~~~-----------~~--~~~~~v~~~~~Dl~~~--- 176 (309)
..+|++|||||++++|.+.+..|+ +.|..|+++.+.......... +. -.......+.+|++++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 456899999999999999999998 678999988875443332110 00 1234667889999876
Q ss_pred ---------ccCCCCEEEEcccCCCCCCC------------------------cCC-h-----hHHHHHHHHHHHHH---
Q 021681 177 ---------ILLEVDQIYHLACPASPVHY------------------------KYN-P-----VKTIKTNVMGTLNM--- 214 (309)
Q Consensus 177 ---------~~~~~D~Vih~A~~~~~~~~------------------------~~~-~-----~~~~~~Nv~gt~~l--- 214 (309)
.+.++|++||++|....... ..+ + ...-+-++.+|..+
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~ 207 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGG 207 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhh
Confidence 34679999999985311000 000 0 00011223333332
Q ss_pred ------HHHHHHc-----CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCcEE
Q 021681 215 ------LGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA-GVEVR 282 (309)
Q Consensus 215 ------l~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~-gi~~~ 282 (309)
+.+.... |++++-+|+.+.- ..| |.-....||.+|...|..++.++.+. ++++.
T Consensus 208 s~~s~w~~al~~a~lla~G~siva~SYiGse----------~t~----P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~ 273 (401)
T 4ggo_A 208 EDWERWIKQLSKEGLLEEGCITLAYSYIGPE----------ATQ----ALYRKGTIGKAKEHLEATAHRLNKENPSIRAF 273 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCG----------GGH----HHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred hHHHHHHHHHHhhhcccCCceEEEEeccCcc----------eee----cCCCccHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 2333333 3478877774421 111 11112479999999999999998875 56666
Q ss_pred EEEeCceeC
Q 021681 283 IARIFNTYG 291 (309)
Q Consensus 283 ivRp~~V~G 291 (309)
++-++.+-.
T Consensus 274 v~v~~a~vT 282 (401)
T 4ggo_A 274 VSVNKGLVT 282 (401)
T ss_dssp EEECCCCCC
T ss_pred EEEcCcccc
Confidence 666655544
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-08 Score=87.51 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccc-----cccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-----~~~~~~D~Vih~A 188 (309)
.++|+++||||+|++|+++++.|++.|++|++++|...+..+...+......+.++.+|+.+ ..+.++|+|||||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a 196 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG 196 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence 56789999999999999999999999999999988643222111111000123445566644 3567799999999
Q ss_pred cC
Q 021681 189 CP 190 (309)
Q Consensus 189 ~~ 190 (309)
+.
T Consensus 197 g~ 198 (287)
T 1lu9_A 197 AI 198 (287)
T ss_dssp CT
T ss_pred Cc
Confidence 75
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=77.84 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=52.9
Q ss_pred CCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--
Q 021681 115 RRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-- 176 (309)
Q Consensus 115 ~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-- 176 (309)
+||+|||||| +|++|.++++.|+++|++|+++.+....... ....++.++.+..++
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em~ 75 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE------PHPNLSIREITNTKDLL 75 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC------CCTTEEEEECCSHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------CCCCeEEEEHhHHHHHH
Confidence 5789999999 9999999999999999999999986432110 012466666554332
Q ss_pred -----ccCCCCEEEEcccCC
Q 021681 177 -----ILLEVDQIYHLACPA 191 (309)
Q Consensus 177 -----~~~~~D~Vih~A~~~ 191 (309)
.+.++|++||+||+.
T Consensus 76 ~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp HHHHHHGGGCSEEEECSBCC
T ss_pred HHHHHhcCCCCEEEEcCccc
Confidence 456799999999864
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.2e-07 Score=80.27 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=75.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccc---cccccCCCceEEEec-cccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDN---LVHHFRNPRFELIRH-DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~-Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+||+|++|..++..|+..| .+|+++|++. .... +.+.....++..... +-.+++++++|+||++||.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 589999999999999999999888 6899999865 1111 112111112332212 2234468999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
... ........+..|+..+..+++.+.+... +++++|-
T Consensus 79 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 79 PRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 332 2334456688999999999999988764 5666544
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=75.00 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc
Q 021681 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176 (309)
Q Consensus 113 ~~~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~ 176 (309)
.++||+|||||| +|.||.++++.|+++|++|+++++..... . ...++.++.+-.++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~---~-----~~g~~~~dv~~~~~ 76 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP---T-----PPFVKRVDVMTALE 76 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC---C-----CTTEEEEECCSHHH
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc---c-----CCCCeEEccCcHHH
Confidence 367899999999 69999999999999999999987653111 0 11234333222211
Q ss_pred -------ccCCCCEEEEcccCC
Q 021681 177 -------ILLEVDQIYHLACPA 191 (309)
Q Consensus 177 -------~~~~~D~Vih~A~~~ 191 (309)
.+.++|++|||||+.
T Consensus 77 ~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 77 MEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp HHHHHHHHGGGCSEEEECCBCC
T ss_pred HHHHHHHhcCCCCEEEECCccc
Confidence 346799999999964
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=80.27 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=74.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--e-----EEEEecCCC--Cccccccccc--CCCce-EEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--E-----VIVIDNFFT--GRKDNLVHHF--RNPRF-ELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~-----V~~i~r~~~--~~~~~~~~~~--~~~~v-~~~~~Dl~~~~~~~~D~V 184 (309)
++|.||||+|+||+.++..|+..+. + ++++|.... .......+.. ..+.. .+...+-..+.++++|+|
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV 83 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence 5899999999999999999998764 4 888887431 1111111111 11111 222222234568899999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEec
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTST 230 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iSS 230 (309)
|++||.... ...+....++.|+..+.++++.+.+.+. +++.+|.
T Consensus 84 vitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 84 ILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 999984322 2345567788999999999999999874 3555554
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=65.34 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
++++|+|+|+ |.+|+.+++.|.+.|++|++++++...... .. ......+..|..+. .+.++|+||+++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~-~~----~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 78 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA-YA----SYATHAVIANATEENELLSLGIRNFEYVIVAI 78 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHT-TT----TTCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HH----HhCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence 4678999998 999999999999999999999875332211 11 11234556666543 156799999998
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccc
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy 234 (309)
+. +. +.|. .++..+++.+. +++..++...+
T Consensus 79 ~~--------~~----~~~~----~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 79 GA--------NI----QAST----LTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp CS--------CH----HHHH----HHHHHHHHTTCSEEEEECCSHHH
T ss_pred CC--------ch----HHHH----HHHHHHHHcCCCeEEEEeCCHHH
Confidence 52 11 2333 35566677766 56666665544
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-06 Score=81.92 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
++|+|+|+| +|++|+++++.|++.|++|++++|+...... +...+ ..+..+..|+.+. .+.++|+||||++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~-la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKK-LSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHH-TTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHH-HHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 367999998 7999999999999999999999886432221 11111 2356677777643 4578999999997
Q ss_pred CCCCCCCcCChhHHHHH--H-------HHHHHHHHHHHHHcCCc
Q 021681 190 PASPVHYKYNPVKTIKT--N-------VMGTLNMLGLAKRVGAK 224 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~--N-------v~gt~~ll~~a~~~~~r 224 (309)
...... -....++. | ...+.+++++|++.|++
T Consensus 78 ~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 78 YTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp --CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred cccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 432110 01112221 2 23578899999998875
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=5e-06 Score=75.90 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccc---cccc-cCCCceEEEeccccccccCCCCEEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDN---LVHH-FRNPRFELIRHDVVEPILLEVDQIYH 186 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~---~~~~-~~~~~v~~~~~Dl~~~~~~~~D~Vih 186 (309)
...+++|.|+|++|++|+.++..++..| .+|+++|.+..+.+.. +.+. +...++.+ ..| ..+.++++|+||.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d-~~~al~dADvVvi 82 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSD-IKEALTDAKYIVS 82 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESC-HHHHHTTEEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCC-HHHHhCCCCEEEE
Confidence 4567899999999999999999999988 4899998754322211 1111 11122322 122 2346889999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--c-EEEEe
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--K-FLLTS 229 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r-~v~iS 229 (309)
+||.. .....+-...+..|+.....+++.+.+.+. . ++.+|
T Consensus 83 taG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 83 SGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred ccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 99842 223345567789999999999999988764 3 44444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=62.37 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------cCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------~~~~D~Vih~A 188 (309)
++++|+|+|+ |.+|+.+++.|.+.|++|++++++...... . ....+.++.+|.+++. +.++|.||.+.
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~-~----~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIEL-L----EDEGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH-H----HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHH-H----HHCCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 4578999997 999999999999999999999975432211 1 1124667888887762 35799999887
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
+
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.8e-06 Score=73.68 Aligned_cols=73 Identities=10% Similarity=0.190 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEE-ecCCCCc-ccccccccC--CCceEEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGR-KDNLVHHFR--NPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i-~r~~~~~-~~~~~~~~~--~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+.++|.|+|++|.+|+.+++.+++. +.+++.+ ++..... .....+... ...+.. ..|+ ++.+.++|+||+++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~-~~dl-~~~l~~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSL-DAVKDDFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCS-TTTTTSCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee-cCCH-HHHhcCCCEEEEcCC
Confidence 3469999999999999999998865 5677644 4432211 111111111 112211 2233 445568999998873
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.1e-06 Score=79.20 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCccccccccc--CCCceEEEecccccc-----ccCC--CCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-----ILLE--VDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~-----~~~~--~D~ 183 (309)
||+|+|+|| |++|+.+++.|++.|. +|++.+|+..+........- ....+..+..|+.+. .+.+ +|+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 468999998 9999999999999983 89888886543322211110 113577788888664 3444 899
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iS 229 (309)
|||||++.. ...++++|.+.+++++-++
T Consensus 80 Vin~ag~~~------------------~~~v~~a~l~~g~~vvD~a 107 (405)
T 4ina_A 80 VLNIALPYQ------------------DLTIMEACLRTGVPYLDTA 107 (405)
T ss_dssp EEECSCGGG------------------HHHHHHHHHHHTCCEEESS
T ss_pred EEECCCccc------------------ChHHHHHHHHhCCCEEEec
Confidence 999996310 1467788888888766543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=61.15 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=47.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
+|+|+|+|+ |++|+.+++.|.+.|++|++++++..... .+... ..+..+..|..+. .+.++|+||++..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~-~~~~~---~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICK-KASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH-HHHHh---cCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 578999986 99999999999999999999987533221 11111 1344555665433 2567999999973
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.5e-05 Score=69.86 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccc---cccccC--CCceEEEeccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---LVHHFR--NPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~---~~~~~~--~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
..++|.|+|+ |.+|..++..|+..|. +|+++|++....+.. +.+... ...+.+...| .+.++++|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--YEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--HHHhCCCCEEEEe
Confidence 4578999996 9999999999999886 899998754332221 111111 1233443333 3578899999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
||.. .....+-...+..|+.....+++.+.+.+. .++.+|.
T Consensus 81 ag~p--~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 81 AGAN--QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 9842 222345566788999999999999988764 4544443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=7.1e-05 Score=67.39 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=75.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-C--CeEEEEecCCCCcccccccccCC-CceEEEe--ccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-G--DEVIVIDNFFTGRKDNLVHHFRN-PRFELIR--HDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g--~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~--~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+||+|.+|..++..|... + .+++++|... .......+.... ....+.. .+-..+.++++|+||-+||.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 58999999999999999998875 4 4888888765 222222221111 1223221 12234578999999999984
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
. .....+....++.|..-...+.+.+.+.+. .++.+|.
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3 233356677889999999999999988764 4555543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=71.16 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
-+.|+|+|.|| |++|+.+++.|.+ .++|.+.+++...... . ......+..|+.+. .++++|+||+++
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~-~-----~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEK-V-----KEFATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHH-H-----TTTSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHH-H-----hccCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 34568999998 9999999988865 4799988875432211 1 12344566676554 567899999998
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iS 229 (309)
++. . ...++++|.+.|++++=+|
T Consensus 86 p~~--------------~----~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 86 PGF--------------L----GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp CGG--------------G----HHHHHHHHHHHTCEEEECC
T ss_pred CCc--------------c----cchHHHHHHhcCcceEeee
Confidence 531 0 1368899999998877655
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.2e-05 Score=69.26 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccc---cccccC-CCceEEEeccccccccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---LVHHFR-NPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~---~~~~~~-~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
..+++|.|+|+ |.+|+.++..|+..|. +++++|.+....+.. +.+... ...+.+...| .+.++++|+||.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEEC
Confidence 45679999996 9999999999998876 899998754322211 111110 0233333332 4568999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
||.... ........++.|+.-...+.+.+.+.+. .++.+|
T Consensus 84 ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 84 AGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 984322 2234456678899999999999988764 444444
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00025 Score=64.06 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC-----CCceEEE-eccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELI-RHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~-~~Dl~~~~~~~~D~Vih~ 187 (309)
++++|.|+| +|.+|..++..|+..+. +|+++|.+....+....+... .....+. ..| .+.++++|+||.+
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVIi~ 80 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVIVT 80 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEEEc
Confidence 357899999 59999999999999887 899999865443221111111 1122232 233 3688999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
||... .........+..|+.....+++.+.+... .++.+|
T Consensus 81 ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 81 AGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 98432 23345567788999999999999988764 455554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00051 Score=54.91 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~ 187 (309)
..+++|+|+|+ |.+|..+++.|.+.|++|++++++...... +.. ......+..|..+. .+.++|+||.+
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~-~~~---~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHR-LNS---EFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGG-SCT---TCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HHh---cCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 34579999995 999999999999999999999986443221 110 12344555554332 25679999998
Q ss_pred cc
Q 021681 188 AC 189 (309)
Q Consensus 188 A~ 189 (309)
.+
T Consensus 92 ~~ 93 (155)
T 2g1u_A 92 TN 93 (155)
T ss_dssp SS
T ss_pred eC
Confidence 74
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=7.4e-05 Score=66.68 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=75.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccc---ccccc--CCCceEEE-eccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---LVHHF--RNPRFELI-RHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~---~~~~~--~~~~v~~~-~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|+|+ |.+|..++..|+..|. +|++++++....+.. +.+.. -.....+. ..| .+.++++|+||.+|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEECC
Confidence 58999998 9999999999999887 899999865432211 11110 01122333 234 67889999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
|... ....+....+..|+.-...+++.+.+.+. .++.+|.
T Consensus 78 g~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 8432 22345667788999999999999988864 4555553
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.72 E-value=6.7e-05 Score=68.68 Aligned_cols=97 Identities=9% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-----C-eEEEEecCC-CCc-ccccccccCC-CceEEEeccccccccCCCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-----D-EVIVIDNFF-TGR-KDNLVHHFRN-PRFELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-----~-~V~~i~r~~-~~~-~~~~~~~~~~-~~v~~~~~Dl~~~~~~~~D~Vi 185 (309)
++++|.|.||||++|+.|++.|++++ . +++.+.+.. ..+ -......+.. ..+.+...| .+.+.++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 35799999999999999999999987 4 676665321 111 1111001111 122222222 23456899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
.|.+... +..++..+ +.|+++|-+|+..
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADF 113 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTT
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCc
Confidence 9986321 33566677 7788999999864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00036 Score=62.91 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC----CCceEEEeccccccccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++|.|+|+ |++|..++..|+..+. +|+++|.+..+.+....+... ...+.+.. + ..+.++++|+||.+++
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-G-DYSDVKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-C-CHHHhCCCCEEEEcCC
Confidence 468999998 9999999999999886 899999875433322211111 12333332 2 2557899999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
... .........+..|+.....+++.+.+.+. -++.+.|
T Consensus 84 ~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 84 ANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp C--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 422 22234456678999999999999988754 3444444
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00021 Score=64.18 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC-----CCceEEEe-ccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|+|| |.+|..++..|+..|. +|+++|.+....+....+... .....+.. .|. +.++++|+||.++|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG 79 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEcCC
Confidence 68999998 9999999999999997 888888765433221111111 11222222 443 56899999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS 231 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~ 231 (309)
..... .......+..|+.....+.+.+.+.+. .++++.|.
T Consensus 80 ~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 80 APRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 43222 222334567888888999999888765 45555553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00013 Score=65.95 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc---ccc--cCCCceEEE-eccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHH--FRNPRFELI-RHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~---~~~--~~~~~v~~~-~~Dl~~~~~~~~D~Vih~ 187 (309)
++++|.|+|+ |.+|..++..|+..|. +|+++|++....+... .+. +......+. ..|. +.++++|+||.+
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVIia 82 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVIVT 82 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEEEC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEEEc
Confidence 4579999998 9999999999999988 9999998654432111 111 001122222 2343 678999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
||.... ...+....+..|+.-...+++.+.+.+. .++.+|.
T Consensus 83 ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 83 AGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 984322 2234456678899999999999988764 4555553
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=64.36 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=75.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc---ccc---cC-CCceEEEeccccccccCCCC
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHH---FR-NPRFELIRHDVVEPILLEVD 182 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~---~~~---~~-~~~v~~~~~Dl~~~~~~~~D 182 (309)
.+..+.|+|.|+|| |.+|..++..|+..|+ +|++++++....+... .+. +. ..++.. ..|+ ++.++++|
T Consensus 4 ~~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-~ea~~~aD 80 (331)
T 1pzg_A 4 ALVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSY-EAALTGAD 80 (331)
T ss_dssp CCCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSH-HHHHTTCS
T ss_pred CcCCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCH-HHHhCCCC
Confidence 34445679999998 9999999999999998 9999988754332211 111 11 122221 1343 33688999
Q ss_pred EEEEcccCCCCCCCcC---ChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 183 QIYHLACPASPVHYKY---NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
+||-+++.......+. ........|+.-...+++.+.+... -++.+.|
T Consensus 81 iVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 81 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 9999997432222100 3345567888888999999888754 3444444
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00026 Score=56.49 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=51.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
.++|+|+|+ |.+|+.+++.|.+.|++|++++++.....+.+.... ...+.++.+|.+++ .+.++|.||.+.+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 457999995 999999999999999999999975321111121111 12467788887765 2667999998873
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=64.36 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=73.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCCc--cc---ccccccCCCceEEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGR--KD---NLVHHFRNPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~~--~~---~~~~~~~~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
-+|.|+||+|.||+.|+..|..... ++.++|...... +. ++.+............+-..+.++++|+|
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advV 104 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIA 104 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEE
Confidence 4899999999999999988876532 677777543211 11 11111111122233333345678999999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEec
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTST 230 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS 230 (309)
|-.||... .....-...++.|..-...+.+.+.+.. ++++.+|.
T Consensus 105 vi~aG~pr--kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 105 IMCGAFPR--KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp EECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EECCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 99998533 3335667889999999999999998864 24555554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=65.68 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC--CCccccccccc-------CCCceEEEeccccccccCCCCEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF--TGRKDNLVHHF-------RNPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~--~~~~~~~~~~~-------~~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
+.++|.|+|+ |.+|..++..|+..|. +|+++|++. ...+....+.. ...++.. ..| .+.++++|+|
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d--~~a~~~aDvV 82 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD--YADTADSDVV 82 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC--GGGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC--HHHhCCCCEE
Confidence 4568999996 9999999999999998 999999863 21111111110 1122221 122 3578999999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
|-+||... ....+....++.|+.-...+.+.+.+.+. .++.+|.
T Consensus 83 Iiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 83 VITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp EECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 99998432 22345667889999999999999988764 4555553
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.7e-05 Score=73.08 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=50.3
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEeccccc-----cccCCCCEEE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILLEVDQIY 185 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-----~~~~~~D~Vi 185 (309)
...++++|+|+|+ |++|+.+++.|++. +.+|++++|+..+....... ..+..+..|+.+ ..+.++|+||
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----~~~~~~~~D~~d~~~l~~~l~~~DvVI 93 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----SGSKAISLDVTDDSALDKVLADNDVVI 93 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----GTCEEEECCTTCHHHHHHHHHTSSEEE
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----cCCcEEEEecCCHHHHHHHHcCCCEEE
Confidence 3456789999997 99999999999998 67999998864332211111 134455666543 3456899999
Q ss_pred EcccC
Q 021681 186 HLACP 190 (309)
Q Consensus 186 h~A~~ 190 (309)
|+++.
T Consensus 94 n~tp~ 98 (467)
T 2axq_A 94 SLIPY 98 (467)
T ss_dssp ECSCG
T ss_pred ECCch
Confidence 99974
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=64.67 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccc---ccc--cCCCceEEE-eccccccccCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHH--FRNPRFELI-RHDVVEPILLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~---~~~--~~~~~v~~~-~~Dl~~~~~~~~D~Vi 185 (309)
...++|.|+|+ |.+|..++..|+..|. +|+++|.+....+... .+. +. ....++ ..|. +.++++|+||
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-~~~~i~~~~d~--~~~~~aDiVv 92 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL-KTPKIVSSKDY--SVTANSKLVI 92 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC-SCCEEEECSSG--GGGTTEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc-CCCeEEEcCCH--HHhCCCCEEE
Confidence 35679999997 9999999999999886 8999987543222211 111 11 112233 2333 3589999999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.+||... .....-...++.|+.-...+.+.+.+... .++.+|.
T Consensus 93 i~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 93 ITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp ECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9998533 23345667889999999999999988754 4555553
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00028 Score=62.84 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=73.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccccccc-----CCCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~-----~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|+|+ |.||+.++..|+.++. +++++|......+....++. -.....+...+ ..+.++++|+||-.||
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~-d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES-CGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC-CHHHhCCCCEEEEecC
Confidence 68999995 9999999999988764 78888875432222221110 01112222221 1246889999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
... .........++.|..-...+.+.+.+.+. .++.+|.
T Consensus 79 ~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 79 LAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 533 33456778899999999999999998875 3444443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.56 E-value=8.7e-05 Score=65.40 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC-CceEEEecccccccc-CCCCEEEEcccCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEPIL-LEVDQIYHLACPA 191 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~~~-~~~D~Vih~A~~~ 191 (309)
.++|+++|+|+ |.+|++++..|++.|.+|++++|...+..+ +.+.+.. ..++. .|. +... .++|+||++++..
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~-la~~~~~~~~~~~--~~~-~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEE-LAKLFAHTGSIQA--LSM-DELEGHEFDLIINATSSG 191 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHH-HHHHTGGGSSEEE--CCS-GGGTTCCCSEEEECCSCG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHhhccCCeeE--ecH-HHhccCCCCEEEECCCCC
Confidence 46789999998 789999999999999999999876433221 1111111 12322 222 1111 5799999999753
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00057 Score=62.82 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=72.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC--e---EEEEecCCCCc----ccccccccCC--Cce-EEEeccccccccCCCCE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--E---VIVIDNFFTGR----KDNLVHHFRN--PRF-ELIRHDVVEPILLEVDQ 183 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~--~---V~~i~r~~~~~----~~~~~~~~~~--~~v-~~~~~Dl~~~~~~~~D~ 183 (309)
.++|.|+||+|.||.+++..|+..+. + +.+.+.+.... +....++... +-. .+...+-....++++|+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 35899999999999999999998763 2 66655433321 1111111111 111 12212223457899999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc-C--CcEEEEec
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--AKFLLTST 230 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~--~r~v~iSS 230 (309)
||-.||.. .....+-...++.|+.-...+.+.+.+. + +.++.+|.
T Consensus 112 VVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 112 ALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp EEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999743 2233566778999999999999999875 3 35555554
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00017 Score=65.68 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=58.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC---eEEEEec-CCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDN-FFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r-~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
++|.|.||+|.+|+.+++.|+++++ +++.+.. ....+. .. +....+.+.+.| ...+.++|+||.+.+.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~--~~--~~g~~i~~~~~~--~~~~~~~DvV~~a~g~-- 78 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MG--FAESSLRVGDVD--SFDFSSVGLAFFAAAA-- 78 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EE--ETTEEEECEEGG--GCCGGGCSEEEECSCH--
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc--cc--cCCcceEEecCC--HHHhcCCCEEEEcCCc--
Confidence 6899999999999999999997654 4555532 111111 10 111122222223 2336789999999851
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
..+..++..+.+.|+++|.+|+..
T Consensus 79 ----------------~~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 79 ----------------EVSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEETTCTT
T ss_pred ----------------HHHHHHHHHHHHCCCEEEEeCCCC
Confidence 124566777778888888888764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=2.1e-05 Score=65.67 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+||||+|.||..+++.+...|++|++++++.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999999999999999999999999998753
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=62.51 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=72.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccccccc-----CCCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~-----~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|+|+ |.+|..++..|+..|. +|+++|.+....+....+.. ......+...| ..+.++++|+||.+||
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~-~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN-DYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES-SSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC-CHHHhCCCCEEEECCC
Confidence 68999996 9999999999998886 89999986643322211110 01122333222 2457899999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
.... ...+....++.|+.-...+.+.+.+.+. .++.+|.
T Consensus 79 ~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 79 LPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 4322 2234567788999999999999988764 4555543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00044 Score=62.58 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC----CCceEEEeccccccccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+.++|.|+|| |.+|..++..|+..+. +++++|.+....+....+... ...+.+.. | ..+.++++|+||..+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence 4469999998 9999999999988775 789988754322221111111 12333333 3 355789999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
+.... ....-...+..|+.....+++.+.+.+. .++.+|
T Consensus 85 g~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 85 GAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 75322 2234456678899999999999888764 455553
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00045 Score=62.46 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccc---ccccC-CCceEEE-eccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHHFR-NPRFELI-RHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~---~~~~~-~~~v~~~-~~Dl~~~~~~~~D~Vih~ 187 (309)
..++|.|+|+ |.+|..++..|+..|. +|+++|.+....+... .+... .....+. ..|.. .++++|+||-+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVIT 96 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEe
Confidence 4579999998 9999999999999886 8999987543322211 11100 1112222 23443 38999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
||.... ...+....+..|+.-...+++.+.+.+. .++.+|.
T Consensus 97 aG~p~k--pG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 97 AGARQQ--EGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CSCCCC--SSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 985332 2344556778899999999999988754 4555543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00052 Score=61.64 Aligned_cols=108 Identities=14% Similarity=0.073 Sum_probs=73.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccccC----CCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+|| |.+|..++..|+..+ .+++++|.+..+.+....+... ...+.+.. + ..+.++++|+||..++.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~-~~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G-SYGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence 58999998 999999999999887 4899998764322221111111 12334433 3 35678999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
... ....-...+..|+.....+++.+.+.+. .++.+|
T Consensus 78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 78 AQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 332 2334556678899999999999988764 455553
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00073 Score=60.49 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=66.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccC----CCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~----~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+|| |.+|..++..|+..|+ +|+++|++.........+... .....+...| .+.++++|+||.+++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCCC
Confidence 58999998 9999999999999998 999999864322211111100 0122332223 3568899999999974
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.... .......+..|+.....+++.+.+... .++.+.|
T Consensus 78 ~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 78 NQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3222 222334567899999999998887754 3443434
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.001 Score=60.99 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=58.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
+++|.|.||||++|..|++.|.++++ ++..+... +.....+. +.. .++...++....+.++|+||-|++.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~-~saG~~~~--~~~--~~~~~~~~~~~~~~~~Dvvf~a~~~-- 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLK--FKD--QDITIEETTETAFEGVDIALFSAGS-- 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECT-TTTTCEEE--ETT--EEEEEEECCTTTTTTCSEEEECSCH--
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcc-ccCCCcce--ecC--CCceEeeCCHHHhcCCCEEEECCCh--
Confidence 35899999999999999998888755 33443321 11111111 111 2232233333456789999999851
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
..+...+..+.+.|+++|-.|+..
T Consensus 75 ----------------~~s~~~a~~~~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 75 ----------------STSAKYAPYAVKAGVVVVDNTSYF 98 (366)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred ----------------HhHHHHHHHHHHCCCEEEEcCCcc
Confidence 113455666677888998888865
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00045 Score=62.29 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=68.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccc---ccc-CCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLV---HHF-RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~---~~~-~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|.|+|| |.+|..++..|+..+. +++++|.+..+.+.... +.. -...+.+.. | ..+.++++|+||..++.
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAGA 82 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence 68999998 9999999999998875 89999875432221111 110 012333333 3 35578999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
..... ..-...+..|+.....+++.+.+.+. .++.+|
T Consensus 83 ~~~~g--~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 83 PQKPG--ESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 33222 23335567899999999999988864 455543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=58.29 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=70.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC--CCeEEEEecCCCCcccccccccC-----CCceEEEe-ccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~--g~~V~~i~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|+|+ |.+|..++..|++. |++|++++++....+....+... .....+.. .|. + .+.++|+||-++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-~l~~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-A-DTANSDIVIITA 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-G-GGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH-H-HHCCCCEEEEeC
Confidence 58999998 99999999999985 78999999875433221101000 01222222 343 3 388999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
+. +..........+..|+.-...+++.+.+... .++.++
T Consensus 78 ~~--p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 78 GL--PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp SC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 63 2222233556777899999999998887753 445543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00055 Score=62.43 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=59.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccc---ccCC-CceEEEeccccccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVH---HFRN-PRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~---~~~~-~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+++|.|.||+|++|+.+++.|+++.. +++.+.+... ....+.. .+.. ..+.+. +. +. +.++|+||.+++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~-~g~~~~~~~~~~~g~~~~~~~--~~-~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRF-AGEPVHFVHPNLRGRTNLKFV--PP-EK-LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTT-TTSBGGGTCGGGTTTCCCBCB--CG-GG-CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchh-hCchhHHhCchhcCccccccc--ch-hH-hcCCCEEEEcCCc
Confidence 46899999999999999999998765 7777655321 1111111 1111 122222 22 22 4789999999862
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
. .+..++..+.+.|+++|-.|+..
T Consensus 79 ~------------------~s~~~a~~~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 G------------------VFAREFDRYSALAPVLVDLSADF 102 (345)
T ss_dssp T------------------HHHHTHHHHHTTCSEEEECSSTT
T ss_pred H------------------HHHHHHHHHHHCCCEEEEcCccc
Confidence 1 13456666778888988888853
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00047 Score=63.64 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccccc---CC-------CceEEEecccccc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF---RN-------PRFELIRHDVVEP 176 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~---~~-------~~v~~~~~Dl~~~ 176 (309)
+|....+++++|.|.||||++|..|++.|.++.+ ++..+.-+.+.....+.+.. .. ....+.. ....
T Consensus 11 ~~~~~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~--~~~~ 88 (381)
T 3hsk_A 11 VPRGSHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE--CKPE 88 (381)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE--SSSC
T ss_pred ccccccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEe--Cchh
Confidence 4444445567899999999999999998887754 66544322111111111110 00 1112222 2222
Q ss_pred -ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 177 -ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 177 -~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.+.++|+||.|.+. .-+..+...+.+.|+++|=.|+..-+
T Consensus 89 ~~~~~~Dvvf~alp~------------------~~s~~~~~~~~~~G~~VIDlSa~fR~ 129 (381)
T 3hsk_A 89 GNFLECDVVFSGLDA------------------DVAGDIEKSFVEAGLAVVSNAKNYRR 129 (381)
T ss_dssp TTGGGCSEEEECCCH------------------HHHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred hhcccCCEEEECCCh------------------hHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 46789999999741 11335556667788899988887644
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=6.7e-05 Score=67.87 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+||||+|.||..+++.+...|++|++++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 568999999999999999999999999999998754
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.002 Score=58.44 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=59.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC---CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG---DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g---~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
+++|.|.||+|++|+.+++.|++++ .+++.+..... ....+. +....+.+...| ...+.++|+||.|.+..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~-~G~~~~--~~~~~i~~~~~~--~~~~~~vDvVf~a~g~~- 76 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERS-EGKTYR--FNGKTVRVQNVE--EFDWSQVHIALFSAGGE- 76 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-TTCEEE--ETTEEEEEEEGG--GCCGGGCSEEEECSCHH-
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCC-CCCcee--ecCceeEEecCC--hHHhcCCCEEEECCCch-
Confidence 5689999999999999999999884 25666653211 111111 112233333323 23456899999998511
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
.+...+..+.+.|+++|-.|+..
T Consensus 77 -----------------~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 77 -----------------LSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence 14456677778888888888864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0019 Score=58.12 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccc---ccc--cCCCceEEEeccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHH--FRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~---~~~--~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
+.++|.|+|| |.+|..++..|+..+. +|+++|.+....+... .+. +....+.+.. | ..+.++++|+||.+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~-~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G-EYSDCHDADLVVIC 81 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C-CGGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C-CHHHhCCCCEEEEC
Confidence 3469999998 9999999999998874 8888887543222111 111 1112333333 3 25568999999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
++... .........+..|+.-...+.+.+.+... -++.+.|
T Consensus 82 ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 82 AGAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 97532 22344556678899999999999888754 3444444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0033 Score=56.65 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc---ccc----cCCCceEEEeccccccccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHH----FRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~---~~~----~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
+++|.|+|| |.+|..++..|+..|. +|+++|.+....+... .+. ....++.. ..|. +.++++|+||-+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~--~al~~aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNTY--DDLAGADVVIVT 79 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECCG--GGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE-CCCH--HHhCCCCEEEEe
Confidence 368999998 9999999999999998 8888887654332111 111 01222322 1444 568999999999
Q ss_pred ccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHHcCC
Q 021681 188 ACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKRVGA 223 (309)
Q Consensus 188 A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (309)
++........ ..-......|+.-...+++.+.+...
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p 118 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9743222111 00344567788888888888877754
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00013 Score=64.76 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC----C---ceEEEeccccccccCCCCEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN----P---RFELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~----~---~v~~~~~Dl~~~~~~~~D~Vi 185 (309)
..++|+++|||++ .+|+++++.|++.| +|++++|...+..+ +.+.+.. . .+++. |+ .+.+.++|+||
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~-l~~~~~~~~~~~~~~~~d~~--~~-~~~~~~~DilV 198 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEA-LAKEIAEKLNKKFGEEVKFS--GL-DVDLDGVDIII 198 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHH-HHHHHHHHHTCCHHHHEEEE--CT-TCCCTTCCEEE
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHH-HHHHHhhhcccccceeEEEe--eH-HHhhCCCCEEE
Confidence 3578899999985 99999999999999 99998876432221 1111100 0 12222 22 34567899999
Q ss_pred EcccCCC
Q 021681 186 HLACPAS 192 (309)
Q Consensus 186 h~A~~~~ 192 (309)
+|++...
T Consensus 199 n~ag~~~ 205 (287)
T 1nvt_A 199 NATPIGM 205 (287)
T ss_dssp ECSCTTC
T ss_pred ECCCCCC
Confidence 9998643
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=61.32 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=46.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----cCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|+|+||+|++|+.+++.|++.|++|++++|+...... +.+. +....+. .+..++.+.++|+||++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~D~Vi~~~ 72 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEA-KAAEYRRIAGDASIT---GMKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHH-HHHHHHHHHSSCCEE---EEEHHHHHHHCSEEEECS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhccccccCCCC---hhhHHHHHhcCCEEEEeC
Confidence 579999999999999999999999999999886432211 1110 0001222 122334567799999997
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00078 Score=61.05 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=56.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC--CCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF--FTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~--~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~ 194 (309)
|+|.|.||+|.+|+.+++.|.++++.+..+... .......+. +....+++...|.. + + ++|+||.|.|.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~--~~g~~i~v~~~~~~-~-~-~~DvV~~a~g~---- 71 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA--FRGEEIPVEPLPEG-P-L-PVDLVLASAGG---- 71 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE--ETTEEEEEEECCSS-C-C-CCSEEEECSHH----
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE--EcCceEEEEeCChh-h-c-CCCEEEECCCc----
Confidence 479999999999999999999776643222111 000111111 11123444444432 2 4 89999999852
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
..+...+..+.+.|+++|-.|+..
T Consensus 72 --------------~~s~~~a~~~~~~G~~vId~s~~~ 95 (331)
T 2yv3_A 72 --------------GISRAKALVWAEGGALVVDNSSAW 95 (331)
T ss_dssp --------------HHHHHHHHHHHHTTCEEEECSSSS
T ss_pred --------------cchHHHHHHHHHCCCEEEECCCcc
Confidence 123345566667788888888874
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00041 Score=61.09 Aligned_cols=74 Identities=14% Similarity=0.300 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCC-CceEEEecccccccc-CCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEPIL-LEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~-~~v~~~~~Dl~~~~~-~~~D~Vih~A~~ 190 (309)
..++|+++|+|+ |.+|++++..|++.|.+|++.+|...+..+ +.+.+.. ..++.. |+ +... .++|+||++++.
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~-l~~~~~~~~~~~~~--~~-~~~~~~~~DivIn~t~~ 190 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKE-LAERFQPYGNIQAV--SM-DSIPLQTYDLVINATSA 190 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHH-HHHHHGGGSCEEEE--EG-GGCCCSCCSEEEECCCC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHccccCCeEEe--eH-HHhccCCCCEEEECCCC
Confidence 356789999997 789999999999999999999886433222 1111111 123322 22 1111 379999999874
Q ss_pred C
Q 021681 191 A 191 (309)
Q Consensus 191 ~ 191 (309)
.
T Consensus 191 ~ 191 (272)
T 1p77_A 191 G 191 (272)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.001 Score=60.76 Aligned_cols=97 Identities=10% Similarity=0.118 Sum_probs=58.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC----------CCceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR----------NPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~----------~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
+++|.|.||+|++|+.+++.|+++.. +++.+..........+..... ...+.+...|. +.+.++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCEE
Confidence 46899999999999999999987754 777764211111111111000 01122222232 234789999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
|.|.+. ..+..++..+.+.|+++|-.|+..
T Consensus 82 f~atp~------------------~~s~~~a~~~~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 82 LSALPN------------------ELAESIELELVKNGKIVVSNASPF 111 (350)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred EECCCh------------------HHHHHHHHHHHHCCCEEEECCccc
Confidence 988741 124556777788888977777764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00016 Score=66.65 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEE--EeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFEL--IRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~--~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
...+++|+|+|+ |.||..+++.+...|++|++++++...... ..+.+.. .+.. ...+..++.+.++|+||++++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~-~~~~~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQY-LDDVFGG-RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTTT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHHhcCc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 356789999998 999999999999999999999986432211 1111111 1211 1222233456789999999974
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=59.82 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=57.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCC----------CceEEEeccccccccC-CCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRN----------PRFELIRHDVVEPILL-EVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~----------~~v~~~~~Dl~~~~~~-~~D~V 184 (309)
++|.|.||+|++|+.+++.|++++. +|+.+.++.......+...... ..+.+...|.. ..+. ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPK-HEEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTT-SGGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHH-HHhcCCCCEE
Confidence 5899999999999999999988753 7777754221111111110000 11112222322 2335 89999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
|.+.+. ..+..++..+.+.|+++|-.|+..
T Consensus 88 ~~atp~------------------~~~~~~a~~~~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 88 FSALPS------------------DLAKKFEPEFAKEGKLIFSNASAY 117 (354)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCEEEECCSTT
T ss_pred EECCCc------------------hHHHHHHHHHHHCCCEEEECCchh
Confidence 999851 113345666677788877777654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0004 Score=58.82 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=50.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
|+|+|+|+ |.+|+.+++.|.+.|++|++++++...... +. ....+.++.+|.+++ .+.++|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~-l~---~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEE-FA---KKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHH-HH---HHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HH---HHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 57999996 999999999999999999999975432221 11 112456788888765 2567999997763
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0029 Score=57.42 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC--CCccccccc---ccCC-CceEEEec-ccccccc-CCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF--TGRKDNLVH---HFRN-PRFELIRH-DVVEPIL-LEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~--~~~~~~~~~---~~~~-~~v~~~~~-Dl~~~~~-~~~D~Vih 186 (309)
|++|.|.||||++|..|++.|.++.. ++..+.... +.....+.+ .+.. ..+.+... | ...+ .++|+||-
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~--~~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSD--ISEFSPGVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESS--GGGTCTTCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCC--HHHHhcCCCEEEE
Confidence 57999999999999999999998643 777665432 111111111 1111 12222222 2 2233 78999998
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
|.+. .-+..++..+.+.|+++|-.|+..
T Consensus 82 a~p~------------------~~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAH------------------EVSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCCh------------------HHHHHHHHHHHHCCCEEEEcCCcc
Confidence 8741 113455666677888999999864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00011 Score=66.60 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccc----cCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPI----LLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~----~~~~D~Vih~A~ 189 (309)
.+++|||+||+|.||..+++.+...|++|++++++..+.+. +...+.... ++....|+.+.. -.++|+||+|+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 227 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRF-LVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG 227 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence 56799999999999999999999999999999875432221 101112111 111111222211 136999999996
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00041 Score=56.92 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccccCCCceEEEecccccc-----c--cCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I--LLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~--~~~~D~Vi 185 (309)
..+++|+|.| .|.+|..+++.|.+. |++|++++++...... +. ...+..+.+|..++ + +.++|.||
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~-~~----~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQ-HR----SEGRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH-HH----HTTCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHH-HH----HCCCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 4567899998 599999999999999 9999999986432221 11 11344555565442 3 56799999
Q ss_pred Eccc
Q 021681 186 HLAC 189 (309)
Q Consensus 186 h~A~ 189 (309)
.+.+
T Consensus 111 ~~~~ 114 (183)
T 3c85_A 111 LAMP 114 (183)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 8773
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0035 Score=56.96 Aligned_cols=93 Identities=23% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEec-CCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDN-FFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r-~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+++|.|.||||++|..|++.|.++.+ ++..+.. ....+. +. +.. .++...|.....+.++|+||-|++.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~--~~--~~~--~~~~~~~~~~~~~~~~Dvvf~a~~~- 73 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRK--LA--FRG--QEIEVEDAETADPSGLDIALFSAGS- 73 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCE--EE--ETT--EEEEEEETTTSCCTTCSEEEECSCH-
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCc--ee--ecC--CceEEEeCCHHHhccCCEEEECCCh-
Confidence 46899999999999999998888743 4554432 111111 11 111 2333334444556889999999851
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
..+...+..+.+.|+++|-.|+..
T Consensus 74 -----------------~~s~~~a~~~~~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 74 -----------------AMSKVQAPRFAAAGVTVIDNSSAW 97 (344)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------HHHHHHHHHHHhCCCEEEECCCcc
Confidence 113455566667788888888864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00014 Score=66.37 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.+++|+|+||+|.+|..+++.+...|++|++++++..
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~ 206 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE 206 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh
Confidence 5679999999999999999999999999999987543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00026 Score=64.43 Aligned_cols=37 Identities=27% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.+++|||+||+|.||..+++.+...|++|++++++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~ 205 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG 205 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence 5679999999999999999999999999999987644
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00013 Score=66.64 Aligned_cols=34 Identities=29% Similarity=0.159 Sum_probs=31.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
++|+||||+|.||..+++.+...|+ +|++++++.
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~ 196 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH 196 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 7999999999999999999999999 999998753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0013 Score=57.94 Aligned_cols=73 Identities=14% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEE-ecCCCCc-ccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVI-DNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i-~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
++++|.|.|++|.+|+.+++.+.+.. .+++.+ ++..... .....+...... .+...+-.++.+.++|+||.+.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~-gv~v~~dl~~ll~~~DVVIDfT 81 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT-GVALTDDIERVCAEADYLIDFT 81 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCC-SCBCBCCHHHHHHHCSEEEECS
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCC-CceecCCHHHHhcCCCEEEEcC
Confidence 35799999999999999999998764 466665 4432211 111111111111 1111222334455789999886
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.006 Score=55.11 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=67.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc---ccccc----CCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN---LVHHF----RNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~---~~~~~----~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
++|.|+|| |.+|..++..|+..|+ +|+++|++....+.. +.+.. ...++... .|. +.++++|+||-++
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~VI~av 90 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY--EYLQNSDVVIITA 90 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH--HHHCCCCEEEEcC
Confidence 58999997 9999999999999998 999999875433321 11110 12233221 454 5788999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (309)
+...... ..-......|+.-...+++.+.+...
T Consensus 91 g~p~k~g--~tr~dl~~~n~~i~~~i~~~i~~~~p 123 (328)
T 2hjr_A 91 GVPRKPN--MTRSDLLTVNAKIVGSVAENVGKYCP 123 (328)
T ss_dssp SCCCCTT--CCSGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCC--CchhhHHhhhHHHHHHHHHHHHHHCC
Confidence 7432222 22234556788888888888877654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=55.63 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccc-c--cccccC-CCceEEEec-cccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKD-N--LVHHFR-NPRFELIRH-DVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~-~--~~~~~~-~~~v~~~~~-Dl~~~~~~~~D~Vih~A 188 (309)
.|+|.|.|+ |.+|..++..|++.|+ +|++++++...... . +.+... .....+... | .+.+.++|+||-++
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~aD~Vii~v 83 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD--PEICRDADMVVITA 83 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC--GGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC--HHHhCCCCEEEECC
Confidence 468999997 9999999999999998 99999986422210 0 111110 012222222 2 24577899999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
+.... ........+..|......+++.+.+.+. .+|...+
T Consensus 84 ~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 84 GPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 63222 2234556677888888888888877644 3444444
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00044 Score=62.25 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=49.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC--CcccccccccC---CCceEEEeccc---cccccCCCCE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT--GRKDNLVHHFR---NPRFELIRHDV---VEPILLEVDQ 183 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~--~~~~~~~~~~~---~~~v~~~~~Dl---~~~~~~~~D~ 183 (309)
..++|+++|+|+ |.+|++++..|.+.|. +|+++.|... .+.+.+.+.+. ...+..+..+- ..+.+.++|+
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 467899999997 8999999999999998 8999988621 11111111111 12234443322 2234668999
Q ss_pred EEEccc
Q 021681 184 IYHLAC 189 (309)
Q Consensus 184 Vih~A~ 189 (309)
||++..
T Consensus 230 IINaTp 235 (315)
T 3tnl_A 230 FTNATG 235 (315)
T ss_dssp EEECSS
T ss_pred EEECcc
Confidence 999864
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0032 Score=56.55 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccc---cccccC--CCceEEEeccccccccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---LVHHFR--NPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~---~~~~~~--~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
+.++|.|+|+ |.+|..++..|+..+. +|+++|++....+.. +.+... ...+.+.. | ..+.++++|+||.+
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~-~~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G-DYDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C-CGGGTTTCSEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C-cHHHhCCCCEEEEc
Confidence 3468999998 9999999999988764 899999864322211 111111 11333333 3 23568899999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
++....... .....+..|..-...+++.+.+... -++++-|
T Consensus 82 ~~~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 82 AGANQKPGE--TRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp CSCCCCTTT--CSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCCCCCC--CHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 986444332 3345567888888888888887754 3444434
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00012 Score=65.97 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+||||+|.||..+++.+...|++|++++++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~ 175 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA 175 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999999999999999999999999998753
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=68.19 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
.++++++|||| |++|++++..|++.|++|++++|...+..+ +...+.. .+..+ .|+.+.....+|++|||++....
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~-la~~~~~-~~~~~-~dl~~~~~~~~DilVN~agvg~~ 437 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALE-LAEAIGG-KALSL-TDLDNYHPEDGMVLANTTSMGMQ 437 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHH-HHHHTTC--CEET-TTTTTC--CCSEEEEECSSTTCT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHcCC-ceeeH-HHhhhccccCceEEEECCCCCCC
Confidence 56789999999 799999999999999999998886433222 2222111 11111 13211123458999999986422
Q ss_pred C-----CCc----CChhHHHHHHHHHH-HHHHHHHHHcCCc
Q 021681 194 V-----HYK----YNPVKTIKTNVMGT-LNMLGLAKRVGAK 224 (309)
Q Consensus 194 ~-----~~~----~~~~~~~~~Nv~gt-~~ll~~a~~~~~r 224 (309)
. ... ..+...+++|+.+. ..+++.+++.|.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~~ 478 (523)
T 2o7s_A 438 PNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAI 478 (523)
T ss_dssp TCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTCE
T ss_pred CCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCCE
Confidence 1 111 12234455555442 2355555555544
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00052 Score=61.24 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
..++++|+|+|+ |.+|+.++..|++.|. +|++++|...+..+ +.+.+....-+....+-..+.+.++|+||++.+..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~-la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAER-LVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHH-HHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 356889999997 7899999999999998 89998886433221 21111110002222222334567899999998643
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0011 Score=60.84 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccc---ccCCCc-eEEEeccccccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVH---HFRNPR-FELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~---~~~~~~-v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++|.|.||+|++|+.+++.|.++.. +++.+..... ....+.. .+.... .++...+ +..+.++|+||.|++.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~-~g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRK-AGQSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTT-TTSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCCT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchh-cCCCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCCc
Confidence 36899999999999999999998865 7777754321 1111111 111100 1111122 3345689999999852
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
.. +...+..+ +.|+++|-.|+..
T Consensus 93 ~~------------------s~~~a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 93 GT------------------TQEIIKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TT------------------HHHHHHTS-CTTCEEEECSSTT
T ss_pred hh------------------HHHHHHHH-hCCCEEEECCccc
Confidence 11 23455666 6777888888853
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00016 Score=66.14 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567999999999999999999999999999998754
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0003 Score=55.51 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+++|+|.|+ |.+|+.+++.|.+.|.+|++.+++...... +.+.+. .+....+-..+.+.++|+||.+.+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~-~a~~~~---~~~~~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRA-FAEKYE---YEYVLINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHH-HHHHHT---CEEEECSCHHHHHHTCSEEEECSCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHH-HHHHhC---CceEeecCHHHHhcCCCEEEEeCCC
Confidence 679999995 999999999999999998888876433222 111111 3333344444567789999999864
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.002 Score=55.90 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCc------------------cccc----ccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDNL----VHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~------------------~~~~----~~~~~~~~v~~~~ 170 (309)
+++++|+|.|+ |.+|+++++.|++.|. +++++|++.-.. .+.+ ........++.+.
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45679999995 8999999999999997 888888764111 0001 1111122344555
Q ss_pred ccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 171 ~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
.++.+ +.+.++|+||.+.. +.. .-..+.++|++.++.+|..+...
T Consensus 108 ~~~~~~~~~~~~~~~DvVi~~~d---------~~~--------~~~~l~~~~~~~~~p~i~~~~~g 156 (249)
T 1jw9_B 108 ALLDDAELAALIAEHDLVLDCTD---------NVA--------VRNQLNAGCFAAKVPLVSGAAIR 156 (249)
T ss_dssp SCCCHHHHHHHHHTSSEEEECCS---------SHH--------HHHHHHHHHHHHTCCEEEEEEEB
T ss_pred ccCCHhHHHHHHhCCCEEEEeCC---------CHH--------HHHHHHHHHHHcCCCEEEeeecc
Confidence 44442 35678999998872 221 22345667777777777765543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00036 Score=61.87 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccc---ccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
..++++++|+|+ |.+|++++..|.+.|. +|++++|...+..+.... ......+.....|-..+.+.++|+||++.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 357889999997 8999999999999998 799988864432221111 11122344443333445567799999987
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
.
T Consensus 203 p 203 (283)
T 3jyo_A 203 P 203 (283)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0034 Score=56.45 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=66.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccc---ccccC-CCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHHFR-NPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~---~~~~~-~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|.|+ |.+|..++..|++.|+ +|++++++........ .+... .....+...| .+.+.++|+||-+++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccCC
Confidence 57999997 9999999999999998 9999998643222111 10000 0112222234 3467899999999864
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (309)
.... ..........|+.....+++.+.+...
T Consensus 78 ~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~ 108 (319)
T 1a5z_A 78 PQKP--GETRLQLLGRNARVMKEIARNVSKYAP 108 (319)
T ss_dssp CCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3211 123445567888888889888877643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0047 Score=55.42 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=69.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccc---cc---c-CCCceEEEeccccccccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLV---HH---F-RNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~---~~---~-~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
.|+|.|.|+ |.+|..++..|++.|+ +|++++++......... .. . ...++.. ..|. +.+.++|+||-+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~--~a~~~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY--ADISGSDVVIIT 79 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH--HHhCCCCEEEEe
Confidence 368999997 9999999999999998 99999986543322110 00 0 0122222 1343 567899999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS 230 (309)
++..... .......+.-|......+++.+.+... .++.+|.
T Consensus 80 vg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 80 ASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9743322 223344556777778888888877643 3444443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=57.87 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..++++++|+|+ |.+|++++..|.+.|. +|+++.|...+..+ +.+.+....+.....+-... .++|+||++..
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~-la~~~~~~~~~~~~~~~l~~--~~~DivInaTp 190 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALA-LRNELDHSRLRISRYEALEG--QSFDIVVNATS 190 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHH-HHHHHCCTTEEEECSGGGTT--CCCSEEEECSS
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhccCCeeEeeHHHhcc--cCCCEEEECCC
Confidence 457899999997 7999999999999996 89998886443222 21111112344443322221 67999999864
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00018 Score=65.10 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+||||+|.||..+++.+...|++|++++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467999999999999999999999999999998764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00031 Score=63.75 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|||+||+|.+|..+++.+...|++|++++++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999999999999999999999999998754
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=58.33 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..++++++|+|+ |.+|++++..|++.|. +|++++|...+..+.....-....+.....+ +...++|+||++..
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~---~l~~~aDiIInaTp 196 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE---QLKQSYDVIINSTS 196 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---GCCSCEEEEEECSC
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH---HhcCCCCEEEEcCc
Confidence 357889999997 7899999999999996 8999988644322211111111123333322 12267899999864
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0051 Score=55.04 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=71.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccccc-----CCCceEEEe-ccccccccCCCCEEEEcccC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~-----~~~~v~~~~-~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+|.|+|| |.+|..++..|+..+. +|+++|.+....+....+.. ......+.. .|. +.++++|+||-.++.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence 4889998 9999999999988776 79999986543322111111 011222333 453 578999999999985
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.... ...-...+..|+.-...+++.+.+... .++.+|
T Consensus 78 ~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 78 GRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp CCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4332 234456678899999999999888653 455554
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0011 Score=58.58 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++++++|+|+ |.+|++++..|.+.|. +|+++.|...+..+... .+.....+-..+.+.++|+||++..
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~------~~~~~~~~~~~~~~~~aDiVInaTp 184 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL------NINKINLSHAESHLDEFDIIINTTP 184 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS------CCEEECHHHHHHTGGGCSEEEECCC
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH------hcccccHhhHHHHhcCCCEEEECcc
Confidence 46789999996 8999999999999998 89998886543322111 2233333333445678999999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=55.68 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=59.2
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEc
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
-|...+.++|+|||.|| |-+|...++.|++.|++|++++.... +.+........+.++..+..+..+.++|.||-+
T Consensus 23 ~Pifl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~---~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaA 98 (223)
T 3dfz_A 23 YTVMLDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS---AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVA 98 (223)
T ss_dssp CEEEECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC---HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEEC
T ss_pred cccEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEEC
Confidence 56777889999999995 89999999999999999999986432 222222233467777777777788899999965
Q ss_pred c
Q 021681 188 A 188 (309)
Q Consensus 188 A 188 (309)
.
T Consensus 99 T 99 (223)
T 3dfz_A 99 T 99 (223)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0017 Score=50.90 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=50.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------cCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------~~~~D~Vih~A~ 189 (309)
++|+|.|+ |.+|..+++.|.+.|++|++++++...... + ....+.++.+|.+++. +.++|.||-+.+
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~-~----~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDE-L----RERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH-H----HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH-H----HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 47999995 999999999999999999999986433221 1 1235667888887662 356899998873
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0053 Score=54.86 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=67.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCccccccc---c--cCCCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVH---H--FRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~---~--~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|.| +|.+|..++..|++.| ++|++++++.........+ . .....+.+...|. +.+.++|+||-+++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav~ 78 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTLG 78 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEecC
Confidence 6899999 7999999999999998 7999999864322211111 0 0111233333454 56789999999986
Q ss_pred CCCC----CCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 190 PASP----VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 190 ~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.... .. ......+..|+.....+++.+.+... .++++.|
T Consensus 79 ~~~~~~~~~g--~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 79 NIKLQQDNPT--GDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp CGGGTC---------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CcccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 4221 11 11223456788888888888877643 3433334
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=58.29 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=53.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHH-CCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLID-RGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~-~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
|++|.|.||+|++|+.++++|+. +++ .++.+......+ .+. .+....+.+...+- ...+.++|+||.|.+
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~-~~~g~~i~~~~~~~-~~~~~~~DvVf~a~g-- 74 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAP-SFGGTTGTLQDAFD-LEALKALDIIVTCQG-- 74 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCC-GGGTCCCBCEETTC-HHHHHTCSEEEECSC--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Ccc-ccCCCceEEEecCC-hHHhcCCCEEEECCC--
Confidence 46899999999999999995555 443 444544322221 111 11112222222211 122568999999985
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~ 232 (309)
...+..++..+.+.|++.+.++-++
T Consensus 75 ----------------~~~s~~~a~~~~~~G~k~vVID~ss 99 (367)
T 1t4b_A 75 ----------------GDYTNEIYPKLRESGWQGYWIDAAS 99 (367)
T ss_dssp ----------------HHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred ----------------chhHHHHHHHHHHCCCCEEEEcCCh
Confidence 1224456667777887544444433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.018 Score=51.33 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc--cCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+++|.|+|| |.+|..++..|+..|. +|+++|.+.. ......+. +...++... .|. +.++++|+||-.+|.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCCC
Confidence 3468999996 9999999999999988 8999998654 22221111 222345442 454 568999999999986
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (309)
. .....-...+..|+.-...+++.+.+...
T Consensus 88 ~---~pG~tR~dl~~~n~~i~~~i~~~i~~~~p 117 (303)
T 2i6t_A 88 L---GSSQSYLDVVQSNVDMFRALVPALGHYSQ 117 (303)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 22234455677888888888888877643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00044 Score=62.45 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEe---ccccccc-----cCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEPI-----LLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~---~Dl~~~~-----~~~~D~Vih 186 (309)
.+++|||+||+|.+|..+++.+...|.+|++++++..+.. ...+ +... .+++ .|..+.. -.++|+||+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~ga~--~~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKE-YGAE--YLINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-TTCS--EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCc--EEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 4679999999999999999999999999999987543222 1111 2211 1222 2222221 135999999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
|+|
T Consensus 224 ~~g 226 (334)
T 3qwb_A 224 SVG 226 (334)
T ss_dssp CCG
T ss_pred CCC
Confidence 997
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.013 Score=53.38 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELI 169 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~ 169 (309)
.++.++|+|.|+ |.+|+++++.|+..|. +++++|.+.-...+. +........++.+
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 193 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI 193 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence 345679999996 8899999999999996 888888653221111 1111122345555
Q ss_pred eccccccc----cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 021681 170 RHDVVEPI----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (309)
Q Consensus 170 ~~Dl~~~~----~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS 230 (309)
..++.+.. +.++|+||.+.. +... .-..+-++|.+.++.+|..+.
T Consensus 194 ~~~i~~~~~~~~~~~~DlVvd~~D---------n~~~-------~r~~ln~~c~~~~~p~i~~~~ 242 (353)
T 3h5n_A 194 ALNINDYTDLHKVPEADIWVVSAD---------HPFN-------LINWVNKYCVRANQPYINAGY 242 (353)
T ss_dssp ECCCCSGGGGGGSCCCSEEEECCC---------CSTT-------HHHHHHHHHHHTTCCEEEEEE
T ss_pred ecccCchhhhhHhccCCEEEEecC---------ChHH-------HHHHHHHHHHHhCCCEEEEEE
Confidence 55543332 788999999862 2210 112345778888887777654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00086 Score=60.84 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec--ccccc---cc--CCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEP---IL--LEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~--Dl~~~---~~--~~~D~Vih~ 187 (309)
.+++|||+||+|.||..+++.+...|++|++++++..+.+ ...+ +.... +++. |+.+. .. .++|+||+|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~ga~~--v~~~~~~~~~~v~~~~~~~g~Dvvid~ 234 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-FVKS-VGADI--VLPLEEGWAKAVREATGGAGVDMVVDP 234 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHH-HTCSE--EEESSTTHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHh-cCCcE--EecCchhHHHHHHHHhCCCCceEEEEC
Confidence 5679999999999999999999999999999987544332 1211 22221 2222 22221 11 259999999
Q ss_pred cc
Q 021681 188 AC 189 (309)
Q Consensus 188 A~ 189 (309)
+|
T Consensus 235 ~g 236 (342)
T 4eye_A 235 IG 236 (342)
T ss_dssp CC
T ss_pred Cc
Confidence 97
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=60.75 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec--cccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~--Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++++|+|+|+ |.+|+.+++.+...|.+|+++++...+.+. +.+... ..+..+.. +...+.+.++|+||++++.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSY-LETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 34579999998 999999999999999999999886433221 111111 11222211 1223355689999999874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0005 Score=62.69 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccc----cCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPI----LLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~----~~~~D~Vih~A~ 189 (309)
.+++|+|+||+|.||..+++.+...|++|++++++..+.. .+.+ +.... ++....|..+.. -.++|+||+|+|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g 244 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE-ACER-LGAKRGINYRSEDFAAVIKAETGQGVDIILDMIG 244 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-HTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHh-cCCCEEEeCCchHHHHHHHHHhCCCceEEEECCC
Confidence 5679999999999999999999999999999987543322 1111 11111 111111222211 136999999997
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=58.42 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC------C----CceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR------N----PRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~------~----~~v~~~~~Dl~~~~~~~~D~V 184 (309)
+++|.|.||||++|..|++.|.++.+ ++..+..... ....+..... . ....+.. .....+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~--~~~~~~~~vDvv 83 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKP--TDPKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEE--CCGGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEe--CCHHHhcCCCEE
Confidence 35899999999999999997777653 6655532211 1111111100 0 0111222 222345789999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
|.|.+... +..+...+.+.|+++|-.|+..-
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R 114 (359)
T 4dpl_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHR 114 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCcc
Confidence 99985211 22445556677889999998753
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=58.42 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=57.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccC------C----CceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR------N----PRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~------~----~~v~~~~~Dl~~~~~~~~D~V 184 (309)
+++|.|.||||++|..|++.|.++.+ ++..+..... ....+..... . ....+.. .....+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~--~~~~~~~~vDvv 83 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKP--TDPKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEE--CCGGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEe--CCHHHhcCCCEE
Confidence 35899999999999999997777653 6655532211 1111111100 0 0111222 222345789999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
|.|.+... +..+...+.+.|+++|-.|+..-
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R 114 (359)
T 4dpk_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHR 114 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCcc
Confidence 99985211 22445556677889999998753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=59.08 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC---CcccccccccC---CCceEEEecccc---ccccCCCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT---GRKDNLVHHFR---NPRFELIRHDVV---EPILLEVD 182 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~---~~~~~~~~~~~---~~~v~~~~~Dl~---~~~~~~~D 182 (309)
..++++++|+|+ |.+|++++..|.+.|. +|+++.|... +..+ +.+.+. ...+.....+-. .+.+.++|
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~-la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVA-FAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHH-HHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHH-HHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 457889999997 8999999999999998 8999888622 2111 111110 112333332221 23456799
Q ss_pred EEEEcccC
Q 021681 183 QIYHLACP 190 (309)
Q Consensus 183 ~Vih~A~~ 190 (309)
+||++...
T Consensus 223 iIINaTp~ 230 (312)
T 3t4e_A 223 ILTNGTKV 230 (312)
T ss_dssp EEEECSST
T ss_pred EEEECCcC
Confidence 99998643
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.013 Score=53.22 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
++..+|+|.|+ |++|+++++.|+..|. +++++|...-...+. +.+......++...
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 35569999995 8899999999999997 888887542111100 11111223455555
Q ss_pred ccc---cccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 171 HDV---VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 171 ~Dl---~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
.++ .+..+.++|+||.+.. |...-..+-++|.+.++.+|..++.+.+|
T Consensus 113 ~~~~~~~~~~~~~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~G~~G 163 (346)
T 1y8q_A 113 EDIEKKPESFFTQFDAVCLTCC-----------------SRDVIVKVDQICHKNSIKFFTGDVFGYHG 163 (346)
T ss_dssp SCGGGCCHHHHTTCSEEEEESC-----------------CHHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred cccCcchHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence 554 2345678999998762 22223456678888888888877766655
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=58.73 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec----cccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~----Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.+|+|+||+|.+|..+++.+...|++|++++++..+.+. ..+ +... .+++. |+.+ .+.++|+||+ +|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~-~ga~--~~~~~~~~~~~~~-~~~~~d~vid-~g 197 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL-PLA-LGAE--EAATYAEVPERAK-AWGGLDLVLE-VR 197 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHH-HHH-TTCS--EEEEGGGHHHHHH-HTTSEEEEEE-CS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHh-cCCC--EEEECCcchhHHH-HhcCceEEEE-CC
Confidence 46799999999999999999998999999999875443321 111 2221 12221 2222 2367999999 86
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0088 Score=52.92 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEe-cCCCCc-ccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVID-NFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~-r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+++|.|.|++|.+|+.+++.+.+. +.+++.+. +..... .....+........+...+-.++.+.++|+||.+.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS 96 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC
Confidence 458999999999999999999876 44666654 332211 11111111111111111223344556789888876
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.017 Score=49.95 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CCeEEEEec
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDN 148 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r 148 (309)
|+|.|.|++|.+|+.+++.+.+. +++++.+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEc
Confidence 47999999999999999999876 788876654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00054 Score=61.69 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC-ceEEEeccccccc---c--CCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDVVEPI---L--LEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~~Dl~~~~---~--~~~D~Vih~A 188 (309)
.+++|+|+||+|.+|..+++.+...|++|++++++..+.+ ...+ +... .++....|..+.. . .++|+||+|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 217 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA-HAKA-LGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGV 217 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHH-HTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCCEEEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence 5679999999999999999999889999999987543222 1111 1211 1111111222221 1 3699999999
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 218 g 218 (325)
T 3jyn_A 218 G 218 (325)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00089 Score=60.61 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC-ceEEEeccccccc---c--CCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDVVEPI---L--LEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~~Dl~~~~---~--~~~D~Vih~A 188 (309)
.+++|+|+||+|.+|..+++.+...|++|++++++..+.. .+.+ +... .++....|+.+.. . .++|+||+|+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE-ELLR-LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHH-HTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHh-CCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 5679999999999999999988889999999987654332 1211 1211 1111112222221 1 3699999999
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 222 g 222 (340)
T 3gms_A 222 G 222 (340)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0032 Score=53.20 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+|+|.|.| +|.+|+.+++.|.+.|++|++++|+...... +.. ..+... | ..+.+.++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~-~~~----~g~~~~--~-~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR-LFP----SAAQVT--F-QEEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH-HSB----TTSEEE--E-HHHHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH----cCCcee--c-HHHHHhCCCEEEECCC
Confidence 457899999 8999999999999999999998875432211 111 122222 2 2335678999998874
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0085 Score=51.00 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=48.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
.++|+|.|+ |.+|+.+++.|.+.|+ |++++++..... .. . ..+.++.+|.+++ .+.++|.||.+.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~----~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK----VL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHH----HH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHH----HH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 358999997 9999999999999999 998886533211 11 1 3477888888765 256799999876
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.001 Score=60.37 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~ 150 (309)
.+++|+|+||+|.||..+++.+... |++|++++++.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~ 206 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 206 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 5679999999999999999999998 99999998754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=59.70 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC-ceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
...+++|+|+|+ |.||..+++.+...|.+|++++++...... ..+.+... .......+-.++.+.++|+||.+++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~-~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQ-LDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 456889999998 999999999999999999999876433211 11111111 11111122233456689999998863
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00078 Score=61.07 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|||+||+|.+|..+++.+...|++|++++++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467999999999999999999999999999998754
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.017 Score=52.95 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=39.9
Q ss_pred CeEEEEcCCchhHHHHHH-HHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccc-cccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVD-KLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-PILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~-~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-~~~~~~D~Vih~A~ 189 (309)
++|-|.||||++|..|++ .|.++.+ ++..+....... .+.+ +......+. |..+ ..+.++|+||-|.+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~~-~~~~~~~~~--~~~~~~~~~~~Dvvf~a~~ 73 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PAPN-FGKDAGMLH--DAFDIESLKQLDAVITCQG 73 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCC-SSSCCCBCE--ETTCHHHHTTCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCc--CHHH-hCCCceEEE--ecCChhHhccCCEEEECCC
Confidence 579999999999999999 5555552 555554322111 1111 111112222 3322 24678999999985
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0028 Score=58.10 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccc--cCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPI--LLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~--~~~~D~Vih~A~~ 190 (309)
.+.+|+|+||+|.+|..+++.+...|.+|+++++ . .+.+.+. .+.... ++..+.|+.+.. ..++|+||+++|.
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~-~~~~~~~-~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~ 258 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-Q-DASELVR-KLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGG 258 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-G-GGHHHHH-HTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-h-HHHHHHH-HcCCCEEEECCchHHHHHHhhcCCCCEEEECCCC
Confidence 5679999999999999999988889999988873 2 2222222 222211 111111222221 2469999999873
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0011 Score=60.72 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|+|+||+|.+|..+++.+...|++|++++++.
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~ 198 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD 198 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence 467999999999999999999999999999998753
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.028 Score=48.66 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
+++++|+|.|+ |.+|+++++.|+..|. +++++|.+.-...+. +........++.+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45679999996 6799999999999997 788887642111100 00111122344444
Q ss_pred ccccc----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 171 ~Dl~~----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.++.+ ..+.++|+||.+.. +. ..-..+-++|.+.++.+|..+....+
T Consensus 105 ~~~~~~~~~~~~~~~DvVi~~~d---------~~--------~~r~~l~~~~~~~~~p~i~~~~~g~~ 155 (251)
T 1zud_1 105 QRLTGEALKDAVARADVVLDCTD---------NM--------ATRQEINAACVALNTPLITASAVGFG 155 (251)
T ss_dssp SCCCHHHHHHHHHHCSEEEECCS---------SH--------HHHHHHHHHHHHTTCCEEEEEEEBTE
T ss_pred ccCCHHHHHHHHhcCCEEEECCC---------CH--------HHHHHHHHHHHHhCCCEEEEeccccc
Confidence 43432 34567999998862 12 12234566777777777777654433
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0085 Score=52.51 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+++++|+|+ |.+|++++..|.+.|.+|+++.|...+..+.. .+. +.....+ + +.++|+||++...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la--~~~---~~~~~~~---~-l~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ--RLG---CDCFMEP---P-KSAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH--HHT---CEEESSC---C-SSCCSEEEECCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HCC---CeEecHH---H-hccCCEEEEcccC
Confidence 789999996 99999999999999999999988755433222 111 2222211 1 2389999998643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0028 Score=57.99 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec---cccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~---Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.+|||+|+ |.||..+++.+...|.+|++++++..+... ....+... .+++. |...+...++|+||+++|
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~-~~~~lGa~--~v~~~~~~~~~~~~~~~~D~vid~~g 260 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEE-ALKNFGAD--SFLVSRDQEQMQAAAGTLDGIIDTVS 260 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHH-HHHTSCCS--EEEETTCHHHHHHTTTCEEEEEECCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHhcCCc--eEEeccCHHHHHHhhCCCCEEEECCC
Confidence 5679999996 999999999998899999998875433221 11112211 12222 112223357999999997
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.013 Score=51.94 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc---------------------cccccccCCCceEEEe
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK---------------------DNLVHHFRNPRFELIR 170 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~---------------------~~~~~~~~~~~v~~~~ 170 (309)
.++.++|+|.| .|.+|+++++.|++.|. +++++|.+.-... +.+........++.+.
T Consensus 33 kL~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~ 111 (292)
T 3h8v_A 33 KIRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111 (292)
T ss_dssp GGGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence 45667999999 58999999999999996 8888886531110 0011111233455555
Q ss_pred ccccc-----ccc-----------CCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 171 HDVVE-----PIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 171 ~Dl~~-----~~~-----------~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
.++.+ ..+ .++|+||.+. ++. ..-..+-++|.+.++.+|+.+..
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~---------Dn~--------~~R~~in~~c~~~~~Pli~~gv~ 171 (292)
T 3h8v_A 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV---------DNF--------EARMTINTACNELGQTWMESGVS 171 (292)
T ss_dssp CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC---------SSH--------HHHHHHHHHHHHHTCCEEEEEEC
T ss_pred ccCCcHHHHHHHhhhhcccccccCCCCCEEEECC---------cch--------hhhhHHHHHHHHhCCCEEEeeee
Confidence 55543 111 5799999887 222 22234667788888888776553
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0067 Score=53.59 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..++++++|+|+ |..|++++..|.+.|. +|+++.|...+..+ +.. .+..+..+-.+. + ++|+||++..
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~-La~-----~~~~~~~~~l~~-l-~~DivInaTp 187 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSE-IYG-----EFKVISYDELSN-L-KGDVIINCTP 187 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHH-HCT-----TSEEEEHHHHTT-C-CCSEEEECSS
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHH-----hcCcccHHHHHh-c-cCCEEEECCc
Confidence 357889999996 7899999999999998 89998876433222 211 122233222223 4 8999999874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0064 Score=53.51 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=45.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+|+|.|.|++|.+|..+++.|.+.|++|++++++...... +.. .. +.. .| ..+.+.++|+||-+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~-~~~-~g---~~~--~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDR-LQG-MG---IPL--TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHH-HHH-TT---CCC--CC-SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHh-cC---CCc--CC-HHHHhcCCCEEEEcC
Confidence 4699999999999999999999999999988875432211 111 11 111 12 234567899999887
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=52.23 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCeEEEEcCCchhHHHHHH-HHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccc-cccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVD-KLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-PILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~-~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-~~~~~~D~Vih~A~ 189 (309)
.++|-|.||||++|..|++ .|.++.+ ++..+....... .+.+ +......+. |..+ ..+.++|+||.|++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~~-~~~~~~~v~--~~~~~~~~~~vDvvf~a~~ 77 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGG--KAPS-FAKNETTLK--DATSIDDLKKCDVIITCQG 77 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTS--BCCT-TCCSCCBCE--ETTCHHHHHTCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCC--CHHH-cCCCceEEE--eCCChhHhcCCCEEEECCC
Confidence 4689999999999999999 5555552 555554322111 1111 111112222 3322 23578999999985
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=57.05 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC---CCcccccccccCCCceEEEec-cccccc---cCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---TGRKDNLVHHFRNPRFELIRH-DVVEPI---LLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~---~~~~~~~~~~~~~~~v~~~~~-Dl~~~~---~~~~D~Vih 186 (309)
.++++|+|+|| |.+|..+++.+...|++|++++++. .+. +... .+. .+.++. |+.+.. -.++|+||+
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~-~~g---a~~v~~~~~~~~~~~~~~~~d~vid 252 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIE-ETK---TNYYNSSNGYDKLKDSVGKFDVIID 252 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHH-HHT---CEEEECTTCSHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHH-HhC---CceechHHHHHHHHHhCCCCCEEEE
Confidence 45789999999 9999999999988999999998764 222 1111 112 122211 222221 146999999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
++|
T Consensus 253 ~~g 255 (366)
T 2cdc_A 253 ATG 255 (366)
T ss_dssp CCC
T ss_pred CCC
Confidence 997
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0051 Score=57.20 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+++|+|.|+ |.+|..+++.|...|. +|++++|...+..+ +...+. .+.+..+-..+.+.++|+||.+.+
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~-la~~~g---~~~~~~~~l~~~l~~aDvVi~at~ 236 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVE-LARDLG---GEAVRFDELVDHLARSDVVVSATA 236 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHH-HHHHHT---CEECCGGGHHHHHHTCSEEEECCS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHcC---CceecHHhHHHHhcCCCEEEEccC
Confidence 46889999997 9999999999999998 89998875432211 111111 122222223345678999999975
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.01 Score=51.56 Aligned_cols=68 Identities=15% Similarity=0.326 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++ +++|.|+ |.+|++++..|++.|. +|++++|...+..+ +.+ .+.....+-..+.+.++|+||++..
T Consensus 107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~-la~-----~~~~~~~~~~~~~~~~aDiVInatp 175 (253)
T 3u62_A 107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKA-LDF-----PVKIFSLDQLDEVVKKAKSLFNTTS 175 (253)
T ss_dssp CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHT-CCS-----SCEEEEGGGHHHHHHTCSEEEECSS
T ss_pred CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHH-----HcccCCHHHHHhhhcCCCEEEECCC
Confidence 366 8999996 8999999999999998 89999886433222 111 1222233333445678999999864
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.01 Score=52.16 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=36.2
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.|.....++|+|||.|| |-+|...++.|++.|++|++++...
T Consensus 5 lpl~~~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 5 LQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp EEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred eeEEEEcCCCEEEEECC-cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45666788999999995 7999999999999999999998543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=52.15 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
...+++|+|.|+ |.||+.+++.|...|.+|++.++....... ..+ ..++.+..+-.++.+.++|+|+.+..
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~-~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLAR-ITE----MGLVPFHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHH----TTCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHH----CCCeEEchhhHHHHhhCCCEEEECCC
Confidence 467899999995 999999999999999999999876432111 111 12233333444566788999999875
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.036 Score=57.25 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (309)
++..+|+|.|+ |++|.++++.|+..|. +++++|...-...+. +.+......++.+.
T Consensus 25 L~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~ 103 (1015)
T 3cmm_A 25 MQTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLD 103 (1015)
T ss_dssp HTTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECC
T ss_pred HhcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEec
Confidence 45679999995 8899999999999997 888888542111100 11111233555565
Q ss_pred ccccccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 171 HDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 171 ~Dl~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
.++....+.++|+||.+.. .|...-..+-++|.+.++.+|..++.+.+|
T Consensus 104 ~~l~~~~l~~~DvVv~~~d----------------~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 104 SLDDVTQLSQFQVVVATDT----------------VSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp CCCCSTTGGGCSEEEECTT----------------SCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred CCCCHHHHhcCCEEEEcCC----------------CCHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 6666667788999997641 023334456678888888888877665544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=55.98 Aligned_cols=37 Identities=27% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
...||+|+|||++ .||+.+++.|...|.+|++.+++.
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3678999999975 999999999999999999988754
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.014 Score=51.72 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+++|.|.||.|.+|..++..|.+.|++|++++++.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 356899999999999999999999999999988653
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0031 Score=57.21 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=46.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec---ccccccc-----CCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPIL-----LEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~---Dl~~~~~-----~~~D~Vih~ 187 (309)
+++|+|+||+|.+|...++.+...|.+|++++++..+.+ .+.+ +... .+++. |+.+... .++|+||++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~-~Ga~--~~~~~~~~~~~~~v~~~~~~~g~D~vid~ 240 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA-LLKD-IGAA--HVLNEKAPDFEATLREVMKAEQPRIFLDA 240 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHH-HHHH-HTCS--EEEETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCC--EEEECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence 369999999999999999988889999999987543322 1111 1211 12222 2222211 369999999
Q ss_pred cc
Q 021681 188 AC 189 (309)
Q Consensus 188 A~ 189 (309)
+|
T Consensus 241 ~g 242 (349)
T 3pi7_A 241 VT 242 (349)
T ss_dssp SC
T ss_pred CC
Confidence 96
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=53.59 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
+++|+|.|. |-+|+.+++.|.+.|++|++++++...... + ....+.++.+|.+++ -+.++|+||-+.
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~-~----~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIET-L----RKFGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHH-H----HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH-H----HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 457999995 999999999999999999999976443221 1 112456778888776 246789999877
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0032 Score=57.06 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+.+|+|+||+|.+|...++.+...|.+|++++++.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~ 185 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567999999999999999999989999999998753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0025 Score=57.10 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec---cccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~---Dl~~~~~~~~D~Vih~A~ 189 (309)
.|.+|+|+||+|.+|...++.+...|.+|+++.+.. +.+... .+.... +++. |...+.+.++|+||.+.|
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~--~~~~~~-~lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR--NHAFLK-ALGAEQ--CINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH--HHHHHH-HHTCSE--EEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc--hHHHHH-HcCCCE--EEeCCCcchhhhhccCCCEEEECCC
Confidence 467999999999999999999988999998887432 111111 222221 2222 212234468999999986
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.022 Score=51.05 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEe-c--cccccccCCCCEEEE
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIR-H--DVVEPILLEVDQIYH 186 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~-~--Dl~~~~~~~~D~Vih 186 (309)
+....+++++|.|++.-+|+.+++.|++.|.+|++++|......+.......... ...+. . +-..+.+.++|+||.
T Consensus 172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 4457899999999988899999999999999999988752221111111101001 11111 1 233456678999999
Q ss_pred cccC
Q 021681 187 LACP 190 (309)
Q Consensus 187 ~A~~ 190 (309)
+.+.
T Consensus 252 Atg~ 255 (320)
T 1edz_A 252 GVPS 255 (320)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0029 Score=57.31 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc---c--CCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI---L--LEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~---~--~~~D~Vih~A~ 189 (309)
.+.+|||+||+|.+|..+++.+...|.+|+++ .+..+ .+...+ +....++ ...|+.+.. . .++|+||.++|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~-~~~~~~-lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~g 225 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSD-LEYVRD-LGATPID-ASREPEDYAAEHTAGQGFDLVYDTLG 225 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHH-HHHHHH-HTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHH-HHHHHH-cCCCEec-cCCCHHHHHHHHhcCCCceEEEECCC
Confidence 46799999999999999999999999999888 43222 111221 2211122 111222211 1 36999999986
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.021 Score=50.21 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=45.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+||+++|.|+++.+|+.++..|++.|..|+++.+... | ..+.+.++|+||...+
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~--------------------~-L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK--------------------D-LSLYTRQADLIIVAAG 212 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------C-HHHHHTTCSEEEECSS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch--------------------h-HHHHhhcCCEEEECCC
Confidence 468999999999999999999999999999998865211 1 2244677899998886
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.025 Score=47.37 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
..+|+|.|.| .|.+|..++..|.+.|++|++++++.
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4567999999 79999999999999999999988753
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.028 Score=48.97 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=44.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eE-EEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FE-LIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~-~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.|+ |.+|..++..|.+.|++|++++|+...... +........ +. .+..+. .+.+.++|+||-+.
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCccceee-EEEEcCCCceeeeeeeecC-ccccCCCCEEEEEe
Confidence 57999996 999999999999999999999886543322 211100111 10 011122 23556799999887
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.014 Score=51.21 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++|+|+|.|+ |.+|+.++..|++.|.+|++.+|+..+... +.+.+ .++. .+-..+.+.++|+||++...
T Consensus 127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~-l~~~~---g~~~--~~~~~~~~~~aDiVi~atp~ 196 (275)
T 2hk9_A 127 VKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIK-LAQKF---PLEV--VNSPEEVIDKVQVIVNTTSV 196 (275)
T ss_dssp GGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHH-HTTTS---CEEE--CSCGGGTGGGCSEEEECSST
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHc---CCee--ehhHHhhhcCCCEEEEeCCC
Confidence 46789999995 899999999999999999888875432221 11111 2222 22223456789999999754
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.07 Score=52.26 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEec
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRH 171 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~ 171 (309)
+..+|+|.|+ |++|.++++.|+..|. +++++|...-...+. +........++.+..
T Consensus 16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~ 94 (640)
T 1y8q_B 16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHD 94 (640)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEES
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3458999995 8999999999999997 888888643211110 011112234555555
Q ss_pred cccc-----cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 172 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 172 Dl~~-----~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
++.+ ..+.++|+||.+.. |+..-..+-+.|.+.++.+|..++.+.+
T Consensus 95 ~i~~~~~~~~~~~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iPlI~~g~~G~~ 145 (640)
T 1y8q_B 95 SIMNPDYNVEFFRQFILVMNALD-----------------NRAARNHVNRMCLAADVPLIESGTAGYL 145 (640)
T ss_dssp CTTSTTSCHHHHTTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTE
T ss_pred ccchhhhhHhhhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEeccc
Confidence 5532 35678999998862 2233345667788888777776665443
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.033 Score=53.51 Aligned_cols=103 Identities=10% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc----------c------------ccccccCCCceEEEec
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------D------------NLVHHFRNPRFELIRH 171 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~----------~------------~~~~~~~~~~v~~~~~ 171 (309)
+..+|+|.|+ |++|.++++.|+..|. +++++|...-... + .+.+......++.+..
T Consensus 31 ~~~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~ 109 (531)
T 1tt5_A 31 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE 109 (531)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 3458999995 8899999999999997 8888885421110 0 0111112234445544
Q ss_pred ccc------ccccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 172 DVV------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 172 Dl~------~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
++. ...+.++|+||.+. ++. ..-..+.+.|.+.++.+|..++.+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~DvVi~~~---------d~~--------~~r~~ln~~c~~~~iplI~~~~~G~~G 162 (531)
T 1tt5_A 110 SPENLLDNDPSFFCRFTVVVATQ---------LPE--------STSLRLADVLWNSQIPLLICRTYGLVG 162 (531)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEES---------CCH--------HHHHHHHHHHHHTTCCEEEEEEETTEE
T ss_pred CcchhhhhhHHHhcCCCEEEEeC---------CCH--------HHHHHHHHHHHHcCCCEEEEEecCCeE
Confidence 443 24567899999886 222 233455678888888888887766555
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0069 Score=55.17 Aligned_cols=71 Identities=21% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec----cccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~----Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+.+|||+|+ |.+|..+++.+...|.+|++++++..+.+ .+.+ +... .+++. |..+....++|+||.++|.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~-~~~~-lGa~--~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE-DAMK-MGAD--HYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHH-HTCS--EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHH-cCCC--EEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 4679999999 99999999888888999999987654332 1111 2221 12222 3322233579999999873
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.018 Score=50.93 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
...+++|+|.| .|.||+.+++.|...|.+|++.++...... .... ..++.+..+-.++.+.++|+|+.+..
T Consensus 152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~-~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 152 TIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLA-RIAE----MGMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH----TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHH-HHHH----CCCeecChhhHHHHhcCCCEEEECCC
Confidence 45788999999 599999999999999999999987643211 1111 12233333344556788999999873
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.022 Score=50.54 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccc-ccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-~~~~~~~D~Vih~A~~ 190 (309)
..+|++++|.|+++.+|+.++..|++.|..|+++.+... |+. .+.+.++|+||...+.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------------~l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------------TEDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------------HHHHHHHHHTCSEEEECSCC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------------CchhhhhhccCCEEEECCCC
Confidence 468999999999999999999999999999998875211 111 2456788999999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.022 Score=50.96 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=46.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEecccccc-ccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-ILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-~~~~~D~Vih~A 188 (309)
...|+|.|.| .|.||..+++.|.+.|+ +|++.+++......... ....+....|. ++ .+.++|+||-+.
T Consensus 31 ~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~~~~~~~-~~~~~~~aDvVilav 102 (314)
T 3ggo_A 31 LSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDEGTTSI-AKVEDFSPDFVMLSS 102 (314)
T ss_dssp CSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSEEESCT-TGGGGGCCSEEEECS
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcchhcCCH-HHHhhccCCEEEEeC
Confidence 3457999999 79999999999999999 99999876432221111 11111112222 33 577899999886
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.039 Score=49.65 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=50.6
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.....||+|.|.| .|.||+.+++.|...|.+|++.++....... . -.....+-.++.+.++|+|+.+.
T Consensus 132 ~~~l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~--------~~~~~~~~l~ell~~aDvV~l~l 199 (324)
T 3evt_A 132 TSTLTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPADH-F--------HETVAFTATADALATANFIVNAL 199 (324)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCTT-C--------SEEEEGGGCHHHHHHCSEEEECC
T ss_pred CccccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhHh-H--------hhccccCCHHHHHhhCCEEEEcC
Confidence 4567899999999 7999999999999999999999876433211 1 11233444566778899998876
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.029 Score=52.99 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|...+.++|+|+|.|| |-+|...++.|++.|++|++++..... .+........+.++..+..+..+.++|.||-+.
T Consensus 5 P~~~~l~~~~vlVvGg-G~va~~k~~~L~~~ga~V~vi~~~~~~---~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at 80 (457)
T 1pjq_A 5 PIFCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIP---QFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (457)
T ss_dssp EEEECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCH---HHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred eeEEECCCCEEEEECC-CHHHHHHHHHHHhCcCEEEEEcCCCCH---HHHHHHhcCCEEEEECCCCccccCCccEEEEcC
Confidence 5566778999999995 789999999999999999999864322 222222234566666666666666777777654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0059 Score=57.31 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.|++|+|+||+|.||...++.+...|.+|++++++.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~ 255 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA 255 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567999999999999999999999999999888643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.043 Score=51.38 Aligned_cols=34 Identities=41% Similarity=0.562 Sum_probs=30.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.| +|++|..++..|++.|++|++++++..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 5789998 799999999999999999999987643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.11 Score=49.32 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHC-CC-eEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~-g~-~V~~i~r~~~ 151 (309)
..|+|.|.| .|++|..++..|++. |+ +|++++++..
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 346899998 699999999999999 99 9999998766
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.025 Score=49.73 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.++|.|.| +|.+|..++..|++.|++|++.+++..
T Consensus 4 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 4 ITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899998 599999999999999999999988654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0091 Score=54.30 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCce-EEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v-~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.+|+|+|+ |.+|...++.+...|.+|++++++..+... ..+.+....+ +..+.|...+...++|+||.++|
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~-~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g 253 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREE-ALQDLGADDYVIGSDQAKMSELADSLDYVIDTVP 253 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHH-HHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHH-HHHHcCCceeeccccHHHHHHhcCCCCEEEECCC
Confidence 5679999995 999999998888889999998876433221 1111222211 11111112223347999999987
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.017 Score=51.54 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
..++|+|.|.| .|.+|..+++.|++.|++|++.+++...
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~ 56 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSK 56 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 34668999998 6999999999999999999999886543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.034 Score=48.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=45.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+|++++|.|+++.+|+.++..|++.|..|+++.+.. .| ..+.+.++|+||...+
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~~-L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------------TD-LKSHTTKADILIVAVG 213 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------SS-HHHHHTTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------------hh-HHHhcccCCEEEECCC
Confidence 46899999999999999999999999999998876421 01 2245678899999886
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.044 Score=48.20 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=44.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..+||+++|.|+++.+|+.++..|++.|..|+++.+... | ..+.+.++|+||...+
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~--------------------~-L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR--------------------D-LADHVSRADLVVVAAG 213 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS--------------------C-HHHHHHTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc--------------------C-HHHHhccCCEEEECCC
Confidence 468999999999999999999999999999998864211 1 1234567888888876
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.026 Score=49.40 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..|++++|.|+++.+|+.++..|++.|++|+++.+.. .-..+.+.++|+||...+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHHSSEEEECSSC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHhhccCCEEEECCCC
Confidence 6889999999999999999999999999999886421 1122345678999988863
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.004 Score=56.42 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.+.+|||+|+ |.+|..+++.+...|+ +|++++++.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~ 202 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD 202 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5679999999 9999999999888999 999998753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0098 Score=56.26 Aligned_cols=69 Identities=16% Similarity=0.383 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
..|+|+|.|+ |-+|+.|++.|.++|++|++++.+...... +.+ ...+..+.+|.+++ -+.++|.+|-+.
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~-~~~---~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRE-LQD---KYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHH-HHH---HSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHH---hcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 3579999995 899999999999999999999975432221 111 12566788888777 246799988654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.005 Score=55.64 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEe---cccccc---ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEP---ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~---~Dl~~~---~~~~~D~Vih~A 188 (309)
.+++|+|+|| |.+|..+++.+...|++|++++++..+.+ ...+ +... .+++ .|+.+. ...++|+||+++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-lGa~--~~~d~~~~~~~~~~~~~~~~~d~vid~~ 238 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKE-LGAD--LVVNPLKEDAAKFMKEKVGGVHAAVVTA 238 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHH-TTCS--EEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHH-CCCC--EEecCCCccHHHHHHHHhCCCCEEEECC
Confidence 4679999999 77999999999999999999987543222 1111 1111 1222 122111 115799999998
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 239 g 239 (339)
T 1rjw_A 239 V 239 (339)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.036 Score=47.74 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEe
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~ 147 (309)
+++|.|+|+ |.+|+.+++.+.+++++++.+.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~ 33 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVI 33 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEE
Confidence 579999999 9999999999999877766643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.007 Score=54.68 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.+.+|||+|| |.+|..+++.+...|. +|++++++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4679999999 9999999998888998 999998753
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.03 Score=52.79 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=56.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC-C---eEEEEecCCCCcccccccccCCCceEEEeccc--------cccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG-D---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--------VEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g-~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl--------~~~~~~~~D~V 184 (309)
++|+|.| .|.||+.+++.|+++. . +|++++...... .+.+.. .+.+...++ .+.++++.|+|
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~---g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQY---GVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHH---TCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhc---CCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 3689999 7999999999999875 3 688877543322 111111 123333222 23355556999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS 230 (309)
||++-+. ....++++|.+.|+.++=++-
T Consensus 88 IN~s~~~------------------~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 88 IDVSIGI------------------SSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp EECCSSS------------------CHHHHHHHHHHHTCEEEESSC
T ss_pred EECCccc------------------cCHHHHHHHHHcCCCEEECCC
Confidence 9866210 134688999999877665553
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.062 Score=48.30 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=49.7
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
....||+|.|.| .|-||+.+++.|...|.+|++.++....... . -.....+-.++.+.++|+|+.+.-
T Consensus 136 ~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~--------~~~~~~~~l~ell~~aDvV~l~lP 203 (324)
T 3hg7_A 136 QGLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-F--------DQVYQLPALNKMLAQADVIVSVLP 203 (324)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-C--------SEEECGGGHHHHHHTCSEEEECCC
T ss_pred cccccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-h--------hcccccCCHHHHHhhCCEEEEeCC
Confidence 457889999999 7999999999999999999999876422111 0 112234445667788999888763
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.046 Score=48.98 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=48.5
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
....+|+|.|.| .|-||+.+++.|...|.+|++.++....... .......+-.++.+.++|+|+.+.
T Consensus 135 ~~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~---------~~~~~~~~~l~ell~~aDiV~l~~ 201 (315)
T 3pp8_A 135 YTREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWPG---------VESYVGREELRAFLNQTRVLINLL 201 (315)
T ss_dssp CCSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCTT---------CEEEESHHHHHHHHHTCSEEEECC
T ss_pred CCcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhhh---------hhhhcccCCHHHHHhhCCEEEEec
Confidence 456889999999 6999999999999999999999876432211 011122234456777889888775
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.018 Score=52.64 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccc----cCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPI----LLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~----~~~~D~Vih~A 188 (309)
..+.+|+|+||+|.+|...++.+...|.+|+++. +. .+.+.. ..+.... ++....|+.+.. -.++|+||.+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~-~~~~~~-~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~ 239 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SP-HNFDLA-KSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCI 239 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CG-GGHHHH-HHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESS
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CH-HHHHHH-HHcCCcEEEECCCchHHHHHHHHccCCccEEEECC
Confidence 4567999999999999999998888999998875 22 222222 2222221 111122322221 13499999998
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 240 g 240 (371)
T 3gqv_A 240 T 240 (371)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.015 Score=51.42 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=30.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+|+|.|.|+ |.+|..++..|.+.|++|++++++.
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCH
Confidence 468999995 9999999999999999999998754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.036 Score=52.14 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCC-CCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE-VDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~-~D~Vih~A~~ 190 (309)
.+++|+|+|.|. |..|.++++.|.++|++|.+.|......... .+.+....+.+......+..+.+ +|.||...|+
T Consensus 6 ~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~-~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 6 TFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPT-AQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI 82 (451)
T ss_dssp TTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHH-HHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred hcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChH-HHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence 356889999997 8899999999999999999999754211111 11122224455544444444555 8999998875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.045 Score=51.54 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=30.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.| .|++|..++..|++.|++|++++++..
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 6899998 599999999999999999999998644
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.05 Score=49.16 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
.++++|+|.|+ |++|+++++.|+..|. +++++|..
T Consensus 32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence 46679999995 8999999999999997 78888765
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.031 Score=50.44 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.|.+|||+|+ |.+|...++.+...|.+|++++++..+.+ .+. .+....+ + .|. +....++|+||.++|
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~-~lGa~~v--~-~~~-~~~~~~~D~vid~~g 243 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQ-DAL-SMGVKHF--Y-TDP-KQCKEELDFIISTIP 243 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHH-HHH-HTTCSEE--E-SSG-GGCCSCEEEEEECCC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHH-hcCCCee--c-CCH-HHHhcCCCEEEECCC
Confidence 4679999997 99999999888889999999887654332 122 2222222 2 221 222237999999986
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.032 Score=49.37 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=48.4
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
....||+|.|.| .|.||+.+++.|...|.+|++.++....... ++ ..+-.++.+.++|+|+.+.-
T Consensus 118 ~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----------~~--~~~~l~ell~~aDiV~l~~P 182 (290)
T 3gvx_A 118 TLLYGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----------DV--ISESPADLFRQSDFVLIAIP 182 (290)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTTC----------SE--ECSSHHHHHHHCSEEEECCC
T ss_pred eeeecchheeec-cCchhHHHHHHHHhhCcEEEEEecccccccc----------cc--ccCChHHHhhccCeEEEEee
Confidence 357889999999 6999999999999999999999876433211 11 23334556777898888763
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.021 Score=51.94 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEe
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~ 147 (309)
.+.+|.|.||||++|..|++.|.++.. ++..+.
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~ 45 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 45 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 455899999999999999999999865 666554
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=50.50 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=42.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.| .|.+|..+++.|++.|++|++.+++.......... .+ ...+-..+.+.++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL-----GA--ERAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT-----TC--EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-----CC--eecCCHHHHHhcCCEEEEEc
Confidence 6899998 69999999999999999999998865433221111 11 11222233445677777665
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=51.75 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.++|+|.|.| .|.+|..+++.|++.|++|++.+++......... ..+. ..+-.++.+.++|+||-+.
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~--~~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----LGAT--IHEQARAAARDADIVVSML 95 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----TTCE--EESSHHHHHTTCSEEEECC
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----CCCE--eeCCHHHHHhcCCEEEEEC
Confidence 3567999997 5999999999999999999999876433221111 1121 1223344566788888776
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.35 Score=37.55 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCCeEEEEcCC---chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 115 RRLRIVVTGGA---GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 115 ~~k~VlITGat---G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+.++|.|.|++ |.+|..+++.|++.|++|+.++... +.+ ..+. ..+-.++....+|+++-+..
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~----~~i------~G~~--~~~s~~el~~~vDlvii~vp-- 78 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY----DEI------EGLK--CYRSVRELPKDVDVIVFVVP-- 78 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC----SEE------TTEE--CBSSGGGSCTTCCEEEECSC--
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC----CeE------CCee--ecCCHHHhCCCCCEEEEEeC--
Confidence 44689999987 8999999999999999977766431 111 0111 11222334456899987751
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS 230 (309)
. .....+++.|.+.|++.+++.+
T Consensus 79 --------~--------~~v~~v~~~~~~~g~~~i~~~~ 101 (138)
T 1y81_A 79 --------P--------KVGLQVAKEAVEAGFKKLWFQP 101 (138)
T ss_dssp --------H--------HHHHHHHHHHHHTTCCEEEECT
T ss_pred --------H--------HHHHHHHHHHHHcCCCEEEEcC
Confidence 1 1234555666677775444443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.015 Score=53.24 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.+|||+|+ |.+|...++.+...|.+|++++++..+.+ ...+ +.... ++..+.|..+....++|+||.++|
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~-~a~~-lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g 266 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE-AAKA-LGADEVVNSRNADEMAAHLKSFDFILNTVA 266 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHH-HTCSEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCcEEeccccHHHHHHhhcCCCEEEECCC
Confidence 4679999997 88999999888888999999887544322 1111 22211 111111222223357999999986
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=51.48 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=30.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
+|+|+||+|.+|...++.+...|++|++++++..
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~ 185 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA 185 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 7999999999999999988889999999987643
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.19 Score=42.65 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=38.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEE-EecCCCCcccccccccCCCceEEEecccccccc-CCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~-i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~-~~~D~Vih~A~ 189 (309)
|+|.|.|. |.+|+.+++.|.+.|++|+. .++. ... + . ...| .++.+ .++|+||-+..
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~-~~~-~---------~---~~~~-~~~l~~~~~DvVv~~~~ 59 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVR-GEH-E---------K---MVRG-IDEFLQREMDVAVEAAS 59 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSS-CCC-T---------T---EESS-HHHHTTSCCSEEEECSC
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecC-cch-h---------h---hcCC-HHHHhcCCCCEEEECCC
Confidence 47899996 99999999999988888854 4443 111 1 0 1122 23344 57999998873
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.068 Score=47.35 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=40.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
++|-+.| .|.+|..+++.|++.|++|++.+|+..+.+.... ... ..++-..+.+..+|+||-+-
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----~G~--~~~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK-----LGA--TVVENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTT-----TTC--EECSSGGGGCCTTCEEEECC
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----cCC--eEeCCHHHHHhcCCceeeec
Confidence 4788888 7999999999999999999999886554332211 111 22344445566778887765
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=48.93 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEE-EecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~-i~r~~~ 151 (309)
++|+|.|.| +|.+|..+++.|.+.|++|++ .+|+..
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~ 58 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPA 58 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence 357899999 799999999999999999988 666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 309 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 6e-78 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-51 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-49 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-45 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 4e-45 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 7e-43 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-39 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-37 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 4e-37 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-34 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-33 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-31 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-31 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 9e-30 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-26 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-17 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 3e-16 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 4e-16 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-14 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 5e-14 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 6e-14 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 4e-13 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 8e-13 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 4e-12 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 1e-11 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 2e-11 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 3e-09 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-08 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 3e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 9e-06 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-04 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 3e-04 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.004 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 238 bits (607), Expect = 6e-78
Identities = 135/192 (70%), Positives = 157/192 (81%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+
Sbjct: 3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 62
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP
Sbjct: 63 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 122
Query: 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLD 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 123 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 182
Query: 298 DGRVVSNFVAQV 309
DGRVVSNF+ Q
Sbjct: 183 DGRVVSNFILQA 194
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 171 bits (435), Expect = 1e-51
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVH--HFRNPRFELIRH 171
++TG G GS+L + L+++G EV I F T R D++ H NP+F L
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 172 DVVEPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-- 222
D+ + L D++Y+L + +P T + MGTL +L + +G
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 223 --AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVE 280
+F STSE+YG E PQKET P RS Y K A +T++Y G+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMY 177
Query: 281 VRIARIFNTYGPRM 294
+FN PR
Sbjct: 178 ACNGILFNHESPRR 191
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 166 bits (422), Expect = 1e-49
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I++TGGAGF+GS +V +I + +V ID + G ++L + R+ D+ +
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----- 223
+ D + HLA + P I+TN++GT +L +A++ +
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 224 -----KFLLTSTSEVYGDPLEHPQKET-----YWGNVNPIGERSCYDEGKRTAETLTMDY 273
+F ST EVYGD + E + S Y K +++ L +
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 274 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308
R G+ + N YGP + +++ +
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILN 214
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 153 bits (388), Expect = 4e-45
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 20/205 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIR 170
R++VTGGAGF+GSH V +L+ DEVIV+D+ + G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDVVEPILLEV-----DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AK 224
D+ + LL D I H A + +TNV GT +L A G +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
+ ST++VYG E+ +P+ S Y K ++ + YHR G++VRI
Sbjct: 122 VVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 285 RIFNTYGPRMCLDDGRVVSNFVAQV 309
R N YGP +++ FV +
Sbjct: 177 RCCNNYGPYQ--HPEKLIPLFVTNL 199
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 4e-45
Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 14/182 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+ + G G VGS + +L RGD +V+ +D L + +
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDELNLLDSRAVHDFFASE----- 53
Query: 178 LLEVDQIYHLACPASP-VHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYG 235
+DQ+Y A V P I N+M N++ A + K L +S +Y
Sbjct: 54 --RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYP 111
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ P E+ Y K L Y+R G + R N YGP
Sbjct: 112 KLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN 171
Query: 296 LD 297
Sbjct: 172 FH 173
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 148 bits (374), Expect = 7e-43
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 23/197 (11%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVHHFR---NPRFELIRHDV 173
+TG G GS+L + L+++G EV I F TGR ++L + + +L D+
Sbjct: 6 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 65
Query: 174 VEPIL-------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---- 222
+ ++ +IY+L + T + +GTL +L K G
Sbjct: 66 TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINS 125
Query: 223 AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVR 282
KF STSE+YG E PQKET P RS Y K A + +++ +
Sbjct: 126 VKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAV 180
Query: 283 IARIFNTYGPRMCLDDG 299
+FN PR +
Sbjct: 181 NGILFNHESPRRGANFV 197
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 138 bits (348), Expect = 4e-39
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
I+VTGGAGF+GS+ V + + + V V+D + R EL+ D+ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L++ D I H A + + +P I TN +GT +L A++ +F ST
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 231 SEVYGD-PLEHPQKETYWGNVNPIGE------RSCYDEGKRTAETLTMDYHRGAGVEVRI 283
EVYGD PL G S Y K ++ + + R GV+ I
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATI 183
Query: 284 ARIFNTYGPRMCLD 297
+ N YGP ++
Sbjct: 184 SNCSNNYGPYQHIE 197
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 134 bits (338), Expect = 1e-37
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
R++VTGG+G++GSH +L+ G +VI++DN ++ L + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
L+ +D + H A + P++ NV GTL ++ + K F+
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMD-YHRGAGVEVRIARI 286
+S++ VYGD + P E++ +S Y + K E + D + + R
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 287 FNTYGPRMCLDDGRVVSNFVAQV 309
FN G D G +
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNL 200
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 133 bits (334), Expect = 4e-37
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++ L+ +V+ +DNF TG + NL V + F+ I+
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 172 DVVEPILL-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKF 225
D+ VD + H A S +P+ + TN+ G LNML A+ F
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 137
Query: 226 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
++S YGD P+ E G S Y K E + R G R
Sbjct: 138 TYAASSSTYGDHPGLPKVEDTIGK-----PLSPYAVTKYVNELYADVFSRCYGFSTIGLR 192
Query: 286 IFNTYGPRMCLDD--GRVVSNFVAQV 309
FN +G R + V+ + + +
Sbjct: 193 YFNVFGRRQDPNGAYAAVIPKWTSSM 218
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (314), Expect = 3e-34
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 13/203 (6%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--HFRNPRFELIRHDVVEP 176
++VTGGAG++GSH V +LI+ G + +V DN D++ D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLT 228
LE +D + H A + P++ N++GT+ +L L ++ F+ +
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 229 STSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARI 286
S++ VYGD P P+G + Y K E + D + + I R
Sbjct: 124 SSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRY 182
Query: 287 FNTYGPRMCLDDGRVVSNFVAQV 309
FN G G +
Sbjct: 183 FNPIGAHPSGLIGEDPLGIPNNL 205
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 122 bits (307), Expect = 3e-33
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 21/199 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP 176
++++TGG GF+GS+L + +G ++IV DN G DNL FE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA--KRVGAKFLL 227
+ D +HLA + NP + NV GTLN+L +
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 228 TSTSEVYGDPLEHPQKETYWGNVN-----------PIGERSCYDEGKRTAETLTMDYHRG 276
+ST++VYGD ++ ET + S Y K A+ +DY R
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 277 AGVEVRIARIFNTYGPRMC 295
G+ + R + YG R
Sbjct: 182 FGLNTVVFRHSSMYGGRQF 200
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 118 bits (295), Expect = 1e-31
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 16/203 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP 176
+VTG G G++L L+++G V + + + L + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61
Query: 177 ILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLL 227
+ + ++Y+LA + PV T + +G ++L ++ +F
Sbjct: 62 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 121
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
STSE++G Q E P RS Y K +T++Y G+ +F
Sbjct: 122 ASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 176
Query: 288 NTYGPRMCLD-DGRVVSNFVAQV 309
N P ++ R V++ VA++
Sbjct: 177 NHESPLRGIEFVTRKVTDAVARI 199
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 117 bits (293), Expect = 5e-31
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 10/184 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I +TG GF+ SH+ +L G VI D + +++ F L+ V+E
Sbjct: 17 KISITGAGGFIASHIARRLKHEGHYVIASDWK---KNEHMTEDMFCDEFHLVDLRVMENC 73
Query: 178 LLEVDQIYHLACPASP----VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK---FLLTST 230
L + + H+ A+ + N + N M + NM+ A+ G K + ++
Sbjct: 74 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 133
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
LE + P + + K E L Y++ G+E RI R N Y
Sbjct: 134 IYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIY 193
Query: 291 GPRM 294
GP
Sbjct: 194 GPFG 197
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 113 bits (283), Expect = 9e-30
Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 24/196 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLV---HHFRNPRFELIR 170
++TG G GS+L + L+ +G EV + F T R +++ H+ +L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 171 HDVVEPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223
D+ + L D++Y+LA + P T G L +L +
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 224 KF-----LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAG 278
+ S PQ ET P RS Y K A T++Y G
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAYG 177
Query: 279 VEVRIARIFNTYGPRM 294
+ +FN PR
Sbjct: 178 LFACNGILFNHESPRR 193
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (261), Expect = 1e-26
Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 19/208 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--------VHHFRNPRFELI 169
+++VTGGAG++GSH V +L++ G +VIDNF + V E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPILLEVDQ-------IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDY-HRGAGVEV 281
K L+ S+S +PQ G + Y + K E + D
Sbjct: 124 VKNLVFSSSATVYG---NPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 282 RIARIFNTYGPRMCLDDGRVVSNFVAQV 309
+ R FN G G +
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNL 208
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 78.7 bits (192), Expect = 5e-17
Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 30/212 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTG------------------RKDNLV 158
R++V GGAG++GSH V L+ D V+++D+ + D
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 159 HHFRNPRFELIRHDVVEPILLE--------VDQIYHLACPASPVHYKYNPVKTIKTNVMG 210
+ + L DV L +D + H+ + +P+K NV+G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 211 TLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE---RSCYDEGKRTAE 267
L +L ++ S+S T ++ + S Y E K AE
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCLDDG 299
+ D G++ R FN G D G
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIG 215
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 76.0 bits (185), Expect = 3e-16
Identities = 38/203 (18%), Positives = 63/203 (31%), Gaps = 15/203 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+ VTG GF G L L G V + D+ +
Sbjct: 10 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 69
Query: 178 LLEVDQ-------IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK----FL 226
L ++H+A PV+T TNVMGT+ +L + VG +
Sbjct: 70 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNI 129
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM---DYHRGAGVEVRI 283
+ + + ++ G +P E ++ + + G V
Sbjct: 130 TSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVAT 189
Query: 284 ARIFNTYGPRMCLDDGRVVSNFV 306
R N G D R+V + +
Sbjct: 190 VRAGNVIGGGDWALD-RIVPDIL 211
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 75.4 bits (183), Expect = 4e-16
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--- 173
R+++ G GF+G+HL ++L+ EV +D L +P F + D+
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL----NHPHFHFVEGDISIH 57
Query: 174 ---VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + + + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGE--RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
SEVYG + E + + R Y K+ + + Y G++ + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 289 TYGPRMCLD 297
GPR+
Sbjct: 178 WMGPRLDNL 186
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.3 bits (168), Expect = 1e-14
Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 8/148 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I + G G G + + + G EV V+ + ++++ V+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD 236
+ D + L + + G N++ K G + +++ + D
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTV-------MSEGARNIVAAMKAHGVDKVVACTSAFLLWD 117
Query: 237 PLEHPQKETYWGNVNPIGERSCYDEGKR 264
P + P + + + + + G +
Sbjct: 118 PTKVPPRLQAVTDDHIRMHKVLRESGLK 145
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 69.3 bits (167), Expect = 5e-14
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTGGAGF+GS++V L D+G +++V+DN G K + N + + D + I
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 178 LLEVDQIYHLACPASPVHYKYNP 200
+ + A
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTE 83
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 69.6 bits (168), Expect = 6e-14
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 18/81 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------------------VH 159
R++V GG G+ G L + EV ++DN D+
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62
Query: 160 HFRNPRFELIRHDVVEPILLE 180
EL D+ + L
Sbjct: 63 ALTGKSIELYVGDICDFEFLA 83
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 66.4 bits (160), Expect = 4e-13
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP----RFELIRHDV 173
++VTG GFV SH+V++L++ G +V + NL + + D+
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 174 VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
++ + + +A AS V + + + + GTLN L A + TS
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 232 EVYGDPLEHPQKETYW 247
+ P E +
Sbjct: 132 STVSALIPKPNVEGIY 147
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 65.6 bits (158), Expect = 8e-13
Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 23/180 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG---RKDNLVHHFRNPRFELIRHDVV 174
R+++ GG G++G +V+ I G V+ K ++ +F+ +LI +
Sbjct: 5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 64
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
+ L ++ + + + + + + K L S +
Sbjct: 65 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPSEFGMD 119
Query: 235 GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
D +EH + + A + G
Sbjct: 120 PDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMFAGYFA 164
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 63.3 bits (152), Expect = 4e-12
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG----RKDNLVHHFRNPRFELIRHDV 173
RI++ G G++G H+ +D G ++ T K L+ F+ ++ +
Sbjct: 5 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 64
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 61.8 bits (148), Expect = 1e-11
Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I++TG G +G + +L + EVI D +D ++ V
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTD-----VQD----------LDITNVLAVNKF 47
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
E + + + A + + K N +G N+ A VGA+ + ST V+
Sbjct: 48 FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFD 107
Query: 236 DPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ P E N ++ + + + + I R YG
Sbjct: 108 GEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDGNN 158
Query: 296 L 296
Sbjct: 159 F 159
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 60.6 bits (145), Expect = 2e-11
Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 2/177 (1%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP 176
++VTG +G G + KL + D+ + + + + + ++ D + P
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 64
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
+D + L + ++P K + + + ++V G
Sbjct: 65 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV 124
Query: 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
N + + + Y +G I R
Sbjct: 125 KHIVVVGSMGGTNPDH-PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE 180
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 54.9 bits (130), Expect = 3e-09
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 14/144 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I++ G G VG L L G +I +D + NP V
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSKEFCGDF----SNP-------KGVAET 49
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ ++ D I + A + + P N + A GA + ST V+
Sbjct: 50 VRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109
Query: 236 DPLEHPQKETYWGNVNPIGERSCY 259
+ P +ET + + ++
Sbjct: 110 GTGDIPWQETDATSPLNVYGKTKL 133
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 52.0 bits (123), Expect = 3e-08
Identities = 20/199 (10%), Positives = 42/199 (21%), Gaps = 9/199 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
I V G G G+ L+ G V + + + P L + +
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQAIPNVTLFQGPLLNNV 62
Query: 174 --VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
++ + + + GT+ + +
Sbjct: 63 PLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPA 122
Query: 232 EVYGDPLEHPQKETYWGNVNPIGER-SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
P + + Y+ + F+
Sbjct: 123 VPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPD 182
Query: 291 GPRMCLDDGRVVSNFVAQV 309
P LD V + Q+
Sbjct: 183 IPLPWLDAEHDVGPALLQI 201
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.2 bits (113), Expect = 3e-07
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+++ G G G HL+D+++ VI + L H R +++ +
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVI----APARKALAEHPRLDNPVGPLAELLPQL 59
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVM 209
+D + + + ++
Sbjct: 60 DGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLP 91
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 9e-06
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
+ + G +G G L+ +++++G V
Sbjct: 16 SVFILGASGETGRVLLKEILEQGLFSKVT 44
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 12/112 (10%), Positives = 27/112 (24%), Gaps = 5/112 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+ VV G G VG L G EV++ + + + + +
Sbjct: 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDA 84
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
+ ++ + + ++ N G
Sbjct: 85 SRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
V+ G+GFV +D L D G +V V + +K + P + D
Sbjct: 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE 64
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNV 208
+ + P + K +V
Sbjct: 65 VAKHDLVISLIPYTFHATVIKSAIRQKKHV 94
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (81), Expect = 0.004
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147
+++V GG G +GS +++ G V+ ID
Sbjct: 4 KVIVYGGKGALGSAILEFFKKNGYTVLNID 33
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.97 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.97 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.96 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.96 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.96 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.96 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.95 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.95 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.95 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.95 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.94 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.93 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.93 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.93 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.92 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.92 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.9 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.89 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.87 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.86 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.85 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.85 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.85 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.85 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.85 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.85 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.85 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.85 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.85 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.84 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.84 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.84 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.84 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.84 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.84 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.84 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.84 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.84 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.84 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.83 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.83 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.83 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.83 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.83 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.82 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.82 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.82 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.82 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.82 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.81 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.81 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.81 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.81 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.81 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.81 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.81 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.81 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.8 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.8 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.8 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.8 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.79 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.79 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.79 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.78 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.78 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.78 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.77 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.77 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.77 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.76 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.75 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.75 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.75 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.74 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.74 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.74 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.73 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.72 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.72 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.72 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.67 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.66 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.63 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.61 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.59 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.57 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.57 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.56 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.56 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.55 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.51 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.19 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.19 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.14 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.11 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.11 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.08 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.04 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.92 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.89 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.89 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.87 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.86 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.8 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.78 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.76 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.75 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.73 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.7 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.69 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.68 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.65 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.65 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.64 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.61 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.53 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.52 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.49 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.47 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.47 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.46 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.37 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.36 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.08 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.07 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.06 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.0 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.96 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.93 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.9 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.86 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.76 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.76 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.75 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.7 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.68 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.64 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.57 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.41 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.4 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.38 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.15 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.11 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.0 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.95 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.94 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.75 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.72 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.71 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.6 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.56 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.52 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.5 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.41 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.39 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.29 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.25 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.2 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.1 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.03 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.98 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.98 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.96 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.92 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.77 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.67 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.62 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.62 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.62 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.46 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.44 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.37 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.35 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.34 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.16 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.12 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.11 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.09 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.08 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.03 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.97 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.97 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.89 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.88 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.88 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.83 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.83 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.8 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.79 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.77 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.69 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 93.65 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.59 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.44 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.37 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 93.21 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 93.18 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.14 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.1 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.96 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.93 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.88 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.87 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.74 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.74 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.67 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.58 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.49 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.36 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.3 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.22 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.07 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.03 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.98 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.92 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 91.9 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 91.88 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 91.64 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.61 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 91.24 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.95 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.93 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 90.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.78 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 90.76 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.7 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.67 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.65 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 90.63 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 90.49 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.21 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 90.2 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.2 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 89.89 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.8 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 89.58 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 89.56 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.47 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.1 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.59 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.57 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.42 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 88.06 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 87.49 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.48 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.44 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 87.15 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.05 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.98 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.79 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.69 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 86.46 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 86.3 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 86.21 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.97 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 85.93 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.21 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 85.02 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 84.95 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 84.88 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 84.87 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 84.29 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.16 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 83.53 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 83.24 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.03 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 83.03 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 82.51 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 81.86 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 81.73 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 81.6 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.45 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 80.12 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 80.03 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=264.77 Aligned_cols=192 Identities=70% Similarity=1.172 Sum_probs=173.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~ 196 (309)
|+||||||+||||++|+++|+++|++|+++++.................+++.+.|+.+..+.++|+|||+||......+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~~ 81 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNY 81 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchhH
Confidence 78999999999999999999999999999998766666555555667789999999999999999999999987655555
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG 276 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~ 276 (309)
..++...+++|+.|+.+|+++|++.++|+||+||..||+.....+.+|+.+...++..|.+.|+.+|.++|.+++.+++.
T Consensus 82 ~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~ 161 (312)
T d2b69a1 82 MYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQ 161 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999998888999988877778889999999999999999999999
Q ss_pred cCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 277 AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 277 ~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
+|++++++||++||||++..+.+++++.++++
T Consensus 162 ~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~ 193 (312)
T d2b69a1 162 EGVEVRVARIFNTFGPRMHMNDGRVVSNFILQ 193 (312)
T ss_dssp HCCCEEEEEECCEECTTCCTTCCCHHHHHHHH
T ss_pred hCCcEEEEEeeeEECCCCCCCCccHHHHHHHH
Confidence 99999999999999999877778899999876
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.5e-31 Score=241.43 Aligned_cols=174 Identities=32% Similarity=0.406 Sum_probs=144.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccc-----cccCCCceEEEecccccc-----ccC--CCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLV-----HHFRNPRFELIRHDVVEP-----ILL--EVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~-----~~~~~~~v~~~~~Dl~~~-----~~~--~~D~ 183 (309)
|+|||||||||||++|+++|+++|++|++++|...... ..+. ......+++++.+|+.+. .++ ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999998543211 1111 112346889999999876 233 4799
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC----cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
|||+||..+......++...+++|+.||.+|+++|++.++ |||++||..|||.+...+++|+ ++..|.+.|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~Y 156 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 156 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCChH
Confidence 9999998777777788899999999999999999998764 5999999999998888899998 677888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+.||+++|.+++.+++.++++++++||++||||+..
T Consensus 157 ~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~ 192 (357)
T d1db3a_ 157 AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG 192 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence 999999999999999999999999999999999763
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.97 E-value=2.4e-30 Score=234.00 Aligned_cols=185 Identities=32% Similarity=0.514 Sum_probs=155.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCe------EEEEecCCCC-cccccccccCCCceEEEecccccc-----ccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDE------VIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~------V~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~V 184 (309)
|+||||||+||||++|+++|+++|++ |+.+++.... .............++++..|+.+. ....+|.|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 68999999999999999999999874 4555544322 222333333557899999998776 45679999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGK 263 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (309)
+|+|+.........++...+++|+.|+.+++++|.+.++ ++|++||..+|+.....+++|+ ++..|.+.|+.+|
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHHH
Confidence 999987655555667788899999999999999999987 8999999999999988899998 6888889999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 264 ~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
.++|.+++.++++++++++++||++||||++ ...++++.|+++
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~--~~~~~i~~~i~~ 198 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQ--HPEKLIPLFVTN 198 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTC--CTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCC--CcCcHHHHHHHH
Confidence 9999999999999999999999999999987 446889999875
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.96 E-value=1.4e-29 Score=233.03 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=152.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeE-EEEecCCCC-cccccccccCCCceEEEeccccccc-----c--CCCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEV-IVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V-~~i~r~~~~-~~~~~~~~~~~~~v~~~~~Dl~~~~-----~--~~~D~Vih~ 187 (309)
|+||||||+||||++|+++|+++|++| +++++.... ....+........++++.+|+++.. + .++|+|||+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 689999999999999999999999975 555544322 2233444455678999999998772 2 258999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC----------CcEEEEeccccccCCCCCCCCCCC-----CCCCCC
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----------AKFLLTSTSEVYGDPLEHPQKETY-----WGNVNP 252 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----------~r~v~iSS~~vy~~~~~~~~~E~~-----~~~~~~ 252 (309)
||.........++..++++|+.||.+++++|++.+ .+||++||..+||.....+..|.. +...++
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence 98765555556788899999999999999998753 279999999999976654443332 223356
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHHhC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQV 309 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~~ 309 (309)
..|.+.|+.+|.++|.++..++++++++++++||++||||++ ..+++++.|++++
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~--~~~~~i~~~i~~~ 215 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH--FPEKLIPLVILNA 215 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC--CTTSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCC--CcCcHHHHHHHHH
Confidence 778899999999999999999999999999999999999987 4467899988763
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=2.1e-29 Score=229.47 Aligned_cols=189 Identities=29% Similarity=0.383 Sum_probs=159.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc------ccccCCCceEEEecccccc-----ccCCCCE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRHDVVEP-----ILLEVDQ 183 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~------~~~~~~~~v~~~~~Dl~~~-----~~~~~D~ 183 (309)
+.|+|||||||||||++|+++|+++|++|+++++......... ........++++.+|..+. ....++.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~ 94 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 94 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence 4479999999999999999999999999999998654333221 1111235788899999876 4567999
Q ss_pred EEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 021681 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
|+|+++.........++...+++|+.|+.+|+++|.+.++ ++|++||..+||.....+++|+ .+..|.+.|+.+
T Consensus 95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~s 169 (341)
T d1sb8a_ 95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYAVT 169 (341)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHHH
T ss_pred cccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcchHH
Confidence 9999987665556678889999999999999999999998 8999999999999888899998 677888999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC--CcHHHHHHHh
Q 021681 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQ 308 (309)
Q Consensus 263 K~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~--~~~i~~~i~~ 308 (309)
|.++|.+++.+++..+++++++||++||||+...+. ..+++.++++
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~ 217 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSS 217 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHH
Confidence 999999999999999999999999999999875443 4678877765
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.4e-28 Score=223.87 Aligned_cols=174 Identities=28% Similarity=0.328 Sum_probs=142.8
Q ss_pred CeE-EEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccc------cCCCceEEEeccccccc-----c--CCC
Q 021681 117 LRI-VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHH------FRNPRFELIRHDVVEPI-----L--LEV 181 (309)
Q Consensus 117 k~V-lITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~------~~~~~v~~~~~Dl~~~~-----~--~~~ 181 (309)
|+| |||||+||||++|+++|+++|++|++++|...... ..+... .....++++.+|+++.. + .++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 99999999999999999999999999998643221 111111 11246789999998762 2 358
Q ss_pred CEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC----cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERS 257 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (309)
++++|+|+.........+....+++|+.||.+++++|++.+. ++|++||.+|||.+...+++|+ ++..|.+
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~~ 155 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 155 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCCC
Confidence 899999976554445567778889999999999999998864 6999999999998888889998 6788899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 258 ~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.|+.||.++|++++.+++.++++++++||++||||+..
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~ 193 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRG 193 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCC
Confidence 99999999999999999899999999999999999764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.96 E-value=1.6e-28 Score=224.07 Aligned_cols=191 Identities=26% Similarity=0.403 Sum_probs=147.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeE--EEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEV--IVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V--~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
++|+|||||||||||++|+++|+++|++| +++++................+++++.+|+.+. ++..+|.|+|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~ 80 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 80 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence 47899999999999999999999999864 444443322222222233456899999999776 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCC---CCC----CCCCCCCCCCCCCCCHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE---HPQ----KETYWGNVNPIGERSCYD 260 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~---~~~----~E~~~~~~~~~~~~~~Y~ 260 (309)
|+.........++...+++|+.|+.++++++.+.+.++|++||..+||.... .+. ....+...++..|.+.|+
T Consensus 81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~ 160 (346)
T d1oc2a_ 81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160 (346)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHH
Confidence 9866555555678889999999999999999999999999999999975211 111 111122235677889999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCCCcHHHHHHH
Q 021681 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVA 307 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~ 307 (309)
.+|.++|.+++.++++++++++++||++||||+. .....+..++.
T Consensus 161 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~--~~~~~~~~~i~ 205 (346)
T d1oc2a_ 161 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ--HIEKFIPRQIT 205 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC--CTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC--CccchhHHHHH
Confidence 9999999999999999999999999999999976 33556666654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-28 Score=224.45 Aligned_cols=187 Identities=24% Similarity=0.452 Sum_probs=150.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc--cccCCCceEEEeccccccc-----cC--CCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEPI-----LL--EVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~--~~~~~~~v~~~~~Dl~~~~-----~~--~~D~Vih~ 187 (309)
|+||||||+||||++|++.|+++|++|+++++.......... +......++++.+|+++.. ++ ++|+|||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 689999999999999999999999999999987655443322 2234568899999998872 33 69999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
||.........++...+++|+.||.+++++|++.++ ++|++||..+|+.....+..|.. ....|.+.|+.+|.++
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~~ 156 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLMV 156 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHHH
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhhh
Confidence 986554445567889999999999999999999997 89999999999877766666553 3556789999999999
Q ss_pred HHHHHHHHHh-cCCcEEEEEeCceeCCCCCCC--------CCcHHHHHHH
Q 021681 267 ETLTMDYHRG-AGVEVRIARIFNTYGPRMCLD--------DGRVVSNFVA 307 (309)
Q Consensus 267 E~~v~~~a~~-~gi~~~ivRp~~V~Gp~~~~~--------~~~~i~~~i~ 307 (309)
|.++.++... .+++++++|+++||||+.... ...+++.++.
T Consensus 157 e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~ 206 (338)
T d1udca_ 157 EQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ 206 (338)
T ss_dssp HHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHH
T ss_pred hHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHH
Confidence 9999976655 489999999999999975322 1346666654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=2.4e-27 Score=213.36 Aligned_cols=174 Identities=22% Similarity=0.240 Sum_probs=146.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccccCCCceEEEecccccccc-------CCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~~~-------~~~D~Vih~A 188 (309)
|+|||||||||||++|+++|+++|++|++++|...... ..+.......++.++.+|+.+... ..+++++|+|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a 80 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA 80 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence 68999999999999999999999999999998654332 222223334678999999987621 2478999998
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
+.........++...++.|+.|+.+++++|++.+. ++++.||..+|+.......+|+ ++..|.+.|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 155 (321)
T d1rpna_ 81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYG 155 (321)
T ss_dssp SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHHHHH
Confidence 76555556667888999999999999999999885 6888888999988888888888 6778889999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
|.++..++.+++++++++||+++|||+..
T Consensus 156 E~~~~~~~~~~~~~~~~lr~~~vyGp~~~ 184 (321)
T d1rpna_ 156 HWITVNYRESFGLHASSGILFNHESPLRG 184 (321)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred HHHHHHHHhhcCCcEEEEEEecccCCCcc
Confidence 99999999999999999999999999763
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.4e-27 Score=216.29 Aligned_cols=173 Identities=27% Similarity=0.467 Sum_probs=141.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc--cccCCCceEEEeccccccc-----c--CCCCEEEEc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEPI-----L--LEVDQIYHL 187 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~--~~~~~~~v~~~~~Dl~~~~-----~--~~~D~Vih~ 187 (309)
|.|||||||||||++|+++|+++|++|+++++.......... .......++++.+|+.+.. + .++|+|||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 679999999999999999999999999999876555433221 1223457888899997762 2 269999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCC----CCCCCCCCCCCCCCCCCCHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE----HPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~----~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
||.........++.....+|+.|+.+++++|++.++ ++|++||..+||.... .+++|+ .+..|.+.|+.+
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~s 156 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGHT 156 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHHH
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHhH
Confidence 987655555667788899999999999999999997 8999999999987543 345555 577788999999
Q ss_pred HHHHHHHHHHHHHh--cCCcEEEEEeCceeCCCC
Q 021681 263 KRTAETLTMDYHRG--AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 263 K~~~E~~v~~~a~~--~gi~~~ivRp~~V~Gp~~ 294 (309)
|.++|++++.+.+. .+++++++|+++|||+..
T Consensus 157 K~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~ 190 (347)
T d1z45a2 157 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP 190 (347)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEeecceEeecC
Confidence 99999999998654 589999999999999853
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.8e-27 Score=212.49 Aligned_cols=188 Identities=22% Similarity=0.392 Sum_probs=151.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A~ 189 (309)
|+||||||+||||++|+++|+++|+ +|+++++.... .......++++++.+|+++. ...++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 6899999999999999999999995 89999874322 22233457899999998764 4456999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN--VNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~--~~~~~~~~~Y~~sK~~~E 267 (309)
.........++...+.+|+.|+.+++++|.+.+.+++++||..+|+.......+|..... .....|.+.|+.+|.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 766555566778889999999999999999999999999999999987777666653321 133456688999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCCCCCCC------CCcHHHHHHHh
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCLD------DGRVVSNFVAQ 308 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~------~~~~i~~~i~~ 308 (309)
.+++.+++++|++++++|++.+|||+.... ...+++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 203 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHH
Confidence 999999999999999999999999975432 24467776654
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.5e-27 Score=212.82 Aligned_cols=168 Identities=24% Similarity=0.307 Sum_probs=130.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--cCCCCEEEEcccCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--LLEVDQIYHLACPASP 193 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~--~~~~D~Vih~A~~~~~ 193 (309)
.|+|||||||||||++|+++|+++|+.|+++++... +++.+.+..+.. ...+|.|+|+|+....
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~ 67 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------LNLLDSRAVHDFFASERIDQVYLAAAKVGG 67 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------ccccCHHHHHHHHhhcCCCEEEEcchhccc
Confidence 468999999999999999999999999887654211 111111111122 2358999999975332
Q ss_pred CC-CcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021681 194 VH-YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271 (309)
Q Consensus 194 ~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (309)
.. ...+....+++|+.||.+++++|.+.++ +|||+||.+||+.....+++|+......+..+.+.|+.+|.++|++++
T Consensus 68 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 147 (315)
T d1e6ua_ 68 IVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCE 147 (315)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 21 2335667789999999999999999997 899999999999888888888754443444445689999999999999
Q ss_pred HHHHhcCCcEEEEEeCceeCCCCCCC
Q 021681 272 DYHRGAGVEVRIARIFNTYGPRMCLD 297 (309)
Q Consensus 272 ~~a~~~gi~~~ivRp~~V~Gp~~~~~ 297 (309)
.+++++|++++++||++||||+....
T Consensus 148 ~~~~~~gl~~~ilR~~~vyGp~~~~~ 173 (315)
T d1e6ua_ 148 SYNRQYGRDYRSVMPTNLYGPHDNFH 173 (315)
T ss_dssp HHHHHHCCEEEEEEECEEESTTCCCC
T ss_pred HHHHHhCCCEEEEeeccEECCCCCCC
Confidence 99999999999999999999986543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=1.5e-26 Score=212.07 Aligned_cols=177 Identities=24% Similarity=0.359 Sum_probs=141.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
++|+||||||+||||++|+++|+++|++|+++++....... ... ...++...|+.+. .+.++|.|||+|+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~---~~~--~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---EDM--FCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---GGG--TCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhc--ccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 67899999999999999999999999999999875333221 111 2334555666544 5678999999997
Q ss_pred CCCCCCC-cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHH
Q 021681 190 PASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYW--GNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 190 ~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~--~~~~~~~~~~~Y~~sK~~ 265 (309)
....... ...+...+.+|+.|+.+++++|++.++ ++|++||..+|+.....+.+|... ....+..|.+.|+.+|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~ 168 (363)
T d2c5aa1 89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA 168 (363)
T ss_dssp CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHHH
Confidence 5443332 456788899999999999999999998 899999999999877776666532 233567788999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCCCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCL 296 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~ 296 (309)
+|.+++.+.+++|++++++||++||||++..
T Consensus 169 ~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~ 199 (363)
T d2c5aa1 169 TEELCKHYNKDFGIECRIGRFHNIYGPFGTW 199 (363)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCEECTTSCC
T ss_pred HHHHHHHHHHHhCCCEEEEEeeeEeccCCcc
Confidence 9999999999999999999999999997643
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.94 E-value=1.2e-25 Score=207.50 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=145.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCcccc------------------cccccCCCceEEEecccccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDN------------------LVHHFRNPRFELIRHDVVEP 176 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~------------------~~~~~~~~~v~~~~~Dl~~~ 176 (309)
+|+||||||+||||++|+++|++ .|++|+++|+........ ......+..+.++.+|+++.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 57999999999999999999996 689999998643321110 00111234678899999876
Q ss_pred c--------cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCC--CC
Q 021681 177 I--------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQK--ET 245 (309)
Q Consensus 177 ~--------~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~--E~ 245 (309)
. ..++|+|||+|+.........+....+++|+.++.++++++++.++ +++++||..+|+........ +.
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 2 2468999999987665555567788899999999999999999997 79999999888765433221 11
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCCCC-------CcHHHHHHH
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDD-------GRVVSNFVA 307 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~~~-------~~~i~~~i~ 307 (309)
......+..|.+.|+.+|..+|.+++.+.+.+|++++++||+++|||++..+. ..+++.++.
T Consensus 162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~ 230 (383)
T d1gy8a_ 162 PIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILG 230 (383)
T ss_dssp CBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHH
T ss_pred ccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHH
Confidence 12223677888999999999999999999999999999999999999875432 345665543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=2.4e-26 Score=212.88 Aligned_cols=178 Identities=24% Similarity=0.268 Sum_probs=132.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc----------------c--ccccCCCceEEEecccccc-
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN----------------L--VHHFRNPRFELIRHDVVEP- 176 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~----------------~--~~~~~~~~v~~~~~Dl~~~- 176 (309)
||+|||||||||||++|+++|+++|++|+++|+..+..... . .......+++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999998543211100 0 0011235789999999876
Q ss_pred ----ccC--CCCEEEEcccCCCCCCCcCC---hhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCC
Q 021681 177 ----ILL--EVDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 ----~~~--~~D~Vih~A~~~~~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+. ++|+|||+||.........+ +...+++|+.||.+++++|++.+. ++++.||..+|+.... +..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 333 47999999986544333333 456789999999999999999886 4777777777765332 22222
Q ss_pred CCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 246 YWG---------NVNPIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 246 ~~~---------~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+. ...+..|.+.|+.+|+++|.+++.++++++++++++||++||||+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~ 217 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 217 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence 110 1135677889999999999999999999999999999999999975
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=2.2e-25 Score=201.71 Aligned_cols=173 Identities=25% Similarity=0.331 Sum_probs=136.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc----ccc---ccccCCCceEEEeccccccc-------cCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK----DNL---VHHFRNPRFELIRHDVVEPI-------LLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~----~~~---~~~~~~~~v~~~~~Dl~~~~-------~~~~D 182 (309)
|++||||||||||++|+++|+++|++|++++|...... ..+ ........+.+..+|+.+.. -.++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 78999999999999999999999999999998543211 111 11123456788899997752 13689
Q ss_pred EEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC------CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~------~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
+|||+|+........+++...+.+|+.|+.++++++++.. .++++.||..+|+. ...+.+|+ .+..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~-~~~~~~E~-----~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTT-SCSSBCTT-----SCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceeccc-CCCCCCCC-----CCCCCc
Confidence 9999998655555556788899999999999999987643 25677777777654 34567777 678889
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
+.|+.+|.++|.++..+++.++++++++||++||||+..
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~ 194 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG 194 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence 999999999999999999999999999999999999763
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-25 Score=200.27 Aligned_cols=175 Identities=26% Similarity=0.409 Sum_probs=139.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc--------ccccCCCceEEEeccccccc-----c--CC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--------VHHFRNPRFELIRHDVVEPI-----L--LE 180 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~--------~~~~~~~~v~~~~~Dl~~~~-----~--~~ 180 (309)
.|+|||||||||||++|+++|+++|++|+++++......... .......++.++.+|+++.. + ..
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence 368999999999999999999999999999987544322111 11224568899999998762 2 34
Q ss_pred CCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHH
Q 021681 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY 259 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (309)
+++++|+||..+......++...+++|+.||.++++++++.++ +++++||+.+|+.......++.. ....+.++|
T Consensus 82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y 157 (346)
T d1ek6a_ 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPY 157 (346)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHH
T ss_pred cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChH
Confidence 7789999987665555567888999999999999999999997 89999999999876655444331 334566899
Q ss_pred HHHHHHHHHHHHHHHHh-cCCcEEEEEeCceeCCCC
Q 021681 260 DEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 260 ~~sK~~~E~~v~~~a~~-~gi~~~ivRp~~V~Gp~~ 294 (309)
+.+|..+|..++.+++. .+++.+++|++++|||+.
T Consensus 158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~ 193 (346)
T d1ek6a_ 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHA 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCC
Confidence 99999999999988765 589999999999999964
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.92 E-value=3e-24 Score=195.49 Aligned_cols=190 Identities=23% Similarity=0.252 Sum_probs=144.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----c--CCCCEEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIY 185 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~--~~~D~Vi 185 (309)
++++|+|||||||||||++|+++|+++|++|++++|.................++++.+|+.++. + ..+|+|+
T Consensus 5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hhCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 35789999999999999999999999999999999876554433222223457899999998762 2 3589999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-c-EEEEeccccccCCC-CCCCCCCCCCCCCCCCCCCHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-K-FLLTSTSEVYGDPL-EHPQKETYWGNVNPIGERSCYDEG 262 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r-~v~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~s 262 (309)
|+|+.........++...+++|+.|+.++++++++.+. + +++.|+..+|.... ..+.+|+ .+..|.+.|+.+
T Consensus 85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~~~ 159 (356)
T d1rkxa_ 85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNS 159 (356)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHH
T ss_pred hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCccccc
Confidence 99986554445567888999999999999999999875 4 44444444444333 3344444 567778999999
Q ss_pred HHHHHHHHHHHHHh---------cCCcEEEEEeCceeCCCCCCCCCcHHHHHHHh
Q 021681 263 KRTAETLTMDYHRG---------AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ 308 (309)
Q Consensus 263 K~~~E~~v~~~a~~---------~gi~~~ivRp~~V~Gp~~~~~~~~~i~~~i~~ 308 (309)
|...|..+..++.+ +++.++++||+++|||++.. ...+++.+++.
T Consensus 160 k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~-~~~~i~~~~~~ 213 (356)
T d1rkxa_ 160 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRA 213 (356)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHH
T ss_pred cccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch-hhHHHHHHHHH
Confidence 99999999887653 47889999999999998642 35677777653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.92 E-value=2.4e-24 Score=195.96 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=138.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc--cc-cccCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LV-HHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~--~~-~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
+||+||||||+||||++|+++|+++|++|++++|+....... .. ..........+..|+.+. ++.++|+|+|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~ 89 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH 89 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence 588999999999999999999999999999998864322110 01 111223344566787664 6778999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC-C-cEEEEeccccccCC----CCCCCCCCCC-----------CC
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDP----LEHPQKETYW-----------GN 249 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-r~v~iSS~~vy~~~----~~~~~~E~~~-----------~~ 249 (309)
+|+. .....++...+++|+.||.+++++|.+.+ . ++|++||..+++.. .....+|+.| ..
T Consensus 90 ~a~~---~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e 166 (342)
T d1y1pa1 90 IASV---VSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPE 166 (342)
T ss_dssp CCCC---CSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCT
T ss_pred hccc---ccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccccc
Confidence 9964 34456677888999999999999999975 4 89999997654322 1223344433 12
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCCCCCCC-CCcHHHHHHH
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCLD-DGRVVSNFVA 307 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp~~~~~-~~~~i~~~i~ 307 (309)
..+..|.+.|+.+|..+|.+++.+++.+ +++++++||+.+|||..... ....+..+++
T Consensus 167 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~ 227 (342)
T d1y1pa1 167 SDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMM 227 (342)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHH
T ss_pred cCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHH
Confidence 2455566789999999999999998775 57788999999999975433 3445566554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.90 E-value=1.2e-23 Score=189.50 Aligned_cols=191 Identities=28% Similarity=0.403 Sum_probs=142.2
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-cccccccCCCceEEEecccccc-----ccC--CCCEEEEccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~ 189 (309)
+||||||+||||++|+++|+++|++|+++++...... ..+.......+++++.+|+.+. ++. ++|+|||+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999999999986543322 2222223456789999999875 232 4799999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEecc-ccccCCCCCCCCCC-----------CCCCCCCCCCC
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDPLEHPQKET-----------YWGNVNPIGER 256 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~-~vy~~~~~~~~~E~-----------~~~~~~~~~~~ 256 (309)
.........++...+++|+.||.+|+++|.+.+. +++++||. .+|+.....+..+. .+....+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH 161 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence 7655445567889999999999999999999987 66666665 44444332222111 11122456677
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCCC-CCCcHHHHHHHh
Q 021681 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCL-DDGRVVSNFVAQ 308 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~~-~~~~~i~~~i~~ 308 (309)
+.|+.+|...|.++..+.+.+++...++|+.++||+.... ....+++.|+.+
T Consensus 162 ~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
T d1orra_ 162 SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQK 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHH
Confidence 8999999999999999999999999999999999876432 345667776653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.6e-22 Score=179.21 Aligned_cols=181 Identities=24% Similarity=0.312 Sum_probs=136.8
Q ss_pred EEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEe-cccccc-----ccCCCCEEEEcccCC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIR-HDVVEP-----ILLEVDQIYHLACPA 191 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~-~Dl~~~-----~~~~~D~Vih~A~~~ 191 (309)
||||||+||||++|+++|+++|+ +|+++++........ ........+..+ .|..+. .+..++.|+|+|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV--NLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGH--HHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhh--cccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 89999999999999999999996 799988654433221 111223333333 233222 345689999999743
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTM 271 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (309)
.. ...+.......|+.++.++++++.+.++++++.||..+|+........|+ .+..+.+.|+.+|..+|.+++
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K~~~e~~~~ 152 (307)
T d1eq2a_ 80 ST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (307)
T ss_dssp CT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred cc--cccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccchhhhhcc
Confidence 32 33456777889999999999999999999999999999887776666665 455677899999999999999
Q ss_pred HHHHhcCCcEEEEEeCceeCCCCCCC--CCcHHHHHHHh
Q 021681 272 DYHRGAGVEVRIARIFNTYGPRMCLD--DGRVVSNFVAQ 308 (309)
Q Consensus 272 ~~a~~~gi~~~ivRp~~V~Gp~~~~~--~~~~i~~~i~~ 308 (309)
.++.+++++++++||+++|||++... .+.+++.++++
T Consensus 153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~ 191 (307)
T d1eq2a_ 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQ 191 (307)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHH
T ss_pred ccccccccccccccceeEeeccccccccccccccccccc
Confidence 99999999999999999999987533 24556655543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=8.3e-22 Score=169.67 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=117.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEeccccc-----cccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~-----~~~~~~D~Vih 186 (309)
.++|+|||||||||||++|+++|+++|. +|+++.|......... ...++....|+.+ ..+.++|++||
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d~vi~ 86 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFC 86 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccccccc
Confidence 3567999999999999999999999995 8999998654332221 1345555566544 35788999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
++|.. ....+.....++|+.++.+++++|++.++ +||++||..++.. +.+.|+.+|..
T Consensus 87 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~~K~~ 145 (232)
T d2bkaa1 87 CLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGE 145 (232)
T ss_dssp CCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHH
T ss_pred ccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHHHHHH
Confidence 99732 22334566788999999999999999998 7999999987632 23679999999
Q ss_pred HHHHHHHHHHhcCCc-EEEEEeCceeCCCCC
Q 021681 266 AETLTMDYHRGAGVE-VRIARIFNTYGPRMC 295 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~-~~ivRp~~V~Gp~~~ 295 (309)
+|..+.. .+++ ++|+||+.+||++..
T Consensus 146 ~E~~l~~----~~~~~~~IlRP~~i~G~~~~ 172 (232)
T d2bkaa1 146 VEAKVEE----LKFDRYSVFRPGVLLCDRQE 172 (232)
T ss_dssp HHHHHHT----TCCSEEEEEECCEEECTTGG
T ss_pred hhhcccc----ccccceEEecCceeecCCCc
Confidence 9988765 3554 899999999998753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.86 E-value=5.9e-21 Score=166.00 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+++||||+++||+++++.|+++|++|++.+++.....+...+. ...++..+.+|++++ .+..
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999998654322222122 235778899999887 2457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++|+..+++|+.|+..+++++. +.+ .++|++||.... .
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~----------------~ 144 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW----------------L 144 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG----------------S
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc----------------c
Confidence 99999999976544433 3688999999999999998764 334 489999998765 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|..|.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~ 189 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTAT 189 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----
T ss_pred cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcc
Confidence 3333468999999999999999876 48999999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.85 E-value=1e-21 Score=172.46 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=125.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccC--CCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~--~~D~Vih~A~~~~~~ 194 (309)
|+|||||||||||++|+++|.++|++|++++|.. +++.+.+..+..+. ++|+|||+|+.....
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~ 66 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTAVD 66 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHHcCCCEEEeeccccccc
Confidence 6799999999999999999999999999998632 11111111222333 589999999875555
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYH 274 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a 274 (309)
.....+...+..|+..+.++.+.+...+..++++||..+|+.....+..|. ++..+...|+.+|...|.+++.
T Consensus 67 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~~~~k~~~e~~~~~-- 139 (281)
T d1vl0a_ 67 KCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGENFVKA-- 139 (281)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHH--
T ss_pred cccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhhhhhhhHHHHHHHH--
Confidence 556677888899999999999999998889999999999999888888888 6777889999999999988754
Q ss_pred HhcCCcEEEEEeCceeCCCC
Q 021681 275 RGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 275 ~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+.+++++||++||||+.
T Consensus 140 --~~~~~~i~R~~~vyG~~~ 157 (281)
T d1vl0a_ 140 --LNPKYYIVRTAWLYGDGN 157 (281)
T ss_dssp --HCSSEEEEEECSEESSSS
T ss_pred --hCCCccccceeEEeCCCc
Confidence 478999999999999964
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.2e-20 Score=159.15 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=117.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~A~ 189 (309)
.+|+|+||||||+||++++++|+++|++|+++.|+..+.... ....++++.+|+.+. ++.++|+|||++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 578999999999999999999999999999999875543322 235678899998776 5788999999997
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET 268 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (309)
...... + .+++..++.++++++++.++ |+|++||..+|+.... .......|...|..+|+
T Consensus 77 ~~~~~~----~---~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~------------~~~~~~~~~~~~~~~e~ 137 (205)
T d1hdoa_ 77 TRNDLS----P---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK------------VPPRLQAVTDDHIRMHK 137 (205)
T ss_dssp CTTCCS----C---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC------------SCGGGHHHHHHHHHHHH
T ss_pred cCCchh----h---hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc------------ccccccccchHHHHHHH
Confidence 532211 1 13678899999999999998 8999999988864322 11122468888998888
Q ss_pred HHHHHHHhcCCcEEEEEeCceeCC
Q 021681 269 LTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 269 ~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
+++ +.+++++++||+.+++.
T Consensus 138 ~l~----~~~~~~tiirp~~~~~~ 157 (205)
T d1hdoa_ 138 VLR----ESGLKYVAVMPPHIGDQ 157 (205)
T ss_dssp HHH----HTCSEEEEECCSEEECC
T ss_pred HHH----hcCCceEEEecceecCC
Confidence 765 46899999999999864
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.2e-20 Score=163.62 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=125.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|+++||||+++||++++++|+++|++|++.+|+....++.. +......+.+|++++ .+..
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA----EAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999998643322222 223566788999876 3357
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc----CC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++|+..+++|+.|+.++++++.+. +. .++++||....+
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~---------------- 141 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------------- 141 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------------
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC----------------
Confidence 99999999976544432 357889999999999999987543 33 566777654332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~~ 295 (309)
......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|-..
T Consensus 142 -~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~ 187 (242)
T d1ulsa_ 142 -NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA 187 (242)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhh
Confidence 223468999999999999999877 4899999999999887543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=4.5e-21 Score=166.38 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=128.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
++||+++||||+++||++++++|+++|++|++.+|+....++...+. ...+..+.+|++++ .+..+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 68899999999999999999999999999999998654332222221 24577888999886 24569
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+. ++|++.+++|+.|+.++++.+. +.+ .++|++||...+ .+
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~----------------~~ 145 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL----------------AG 145 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------SC
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc----------------cc
Confidence 9999999976544433 3578899999999999988763 333 389999998765 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
......|+.+|++.+.+++.++.+ +||+++.|.||.|..|.
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~ 189 (244)
T d1nffa_ 146 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM 189 (244)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGG
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChh
Confidence 333468999999999999999977 48999999999998764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.85 E-value=4.5e-21 Score=167.36 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++||++|||||+++||++++++|+++|++|++.+|+.....+...+. ...+..+.+|++++ .+..
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999998654433322222 24678899999876 2457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++|+..+++|+.|+..+++++.+ .+ .++|++||...+ .
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~----------------~ 143 (254)
T d1hdca_ 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL----------------M 143 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------S
T ss_pred ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc----------------c
Confidence 99999999976544432 35788999999999999988743 33 499999998765 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~ 187 (254)
T d1hdca_ 144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc
Confidence 3334578999999999999999977 4899999999999764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.85 E-value=4.7e-21 Score=167.52 Aligned_cols=163 Identities=18% Similarity=0.131 Sum_probs=128.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||+++||||+++||++++++|+++|++|++.+|+....++...+. ..++..+.+|++++ .+..
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999998654333322222 34677889999887 2457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~--~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||......+. ++|+..+++|+.|+..+++++.+ . +.++|++||...+
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~---------------- 143 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR---------------- 143 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT----------------
T ss_pred ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc----------------
Confidence 99999999975544332 35788999999999999887532 2 2389999998765
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.+-.|.
T Consensus 144 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~ 189 (256)
T d1k2wa_ 144 RGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH 189 (256)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT
T ss_pred cccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh
Confidence 23334478999999999999999876 48999999999998763
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.85 E-value=4.7e-21 Score=167.03 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=128.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||++|||||+++||++++++|+++|++|++.+|+....++...+.-....+..+.+|++++ .+..
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3789999999999999999999999999999999986543332222222345788899999876 3457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
+|++|||||......+. ++|+..+++|+.|+.++++++.+ .+ .++|++||...+.
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------------- 147 (251)
T d1zk4a1 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------------- 147 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------------
T ss_pred ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------------
Confidence 99999999976544433 25788999999999999998743 23 3799999976542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+.+.++.+ +||+++.|.||.|..|
T Consensus 148 -~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~ 193 (251)
T d1zk4a1 148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTP 193 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCH
T ss_pred -cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCCh
Confidence 2223468999999999999988754 4799999999999765
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=1e-20 Score=163.43 Aligned_cols=154 Identities=17% Similarity=0.129 Sum_probs=120.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.+++|++|||||+++||++++++|+++|++|++++|+.... ..+..+.+|++++ .+..
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 73 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGP 73 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999864332 2345678888776 3357
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++|+.++++|+.++..+++.+. +.+. ++|++||...+.
T Consensus 74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 137 (237)
T d1uzma1 74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------------- 137 (237)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------
T ss_pred ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc----------------
Confidence 99999999976544432 3678899999999999888653 3444 899999976552
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|..|
T Consensus 138 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~ 181 (237)
T d1uzma1 138 GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 181 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCCh
Confidence 2233468999999999999999877 4899999999999765
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.1e-21 Score=166.12 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=127.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
..++||++|||||+++||+++++.|+++|++|++.+|+....++... . ......+.+|++++ .+.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ-E--LPGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-H--CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-h--cCCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999986443322211 1 24567888999876 345
Q ss_pred CCCEEEEcccCCCCCC-Cc----CChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVH-YK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||...... ++ ++|++++++|+.|+.++++++. +.+.++|++||...+.
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~--------------- 143 (250)
T d1ydea1 79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI--------------- 143 (250)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------------
T ss_pred CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc---------------
Confidence 7999999999654332 22 3578999999999999988764 3356999999976652
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 144 -~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~ 187 (250)
T d1ydea1 144 -GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTP 187 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCH
T ss_pred -cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCh
Confidence 2233468999999999999999877 4899999999999654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=6.5e-21 Score=165.20 Aligned_cols=161 Identities=15% Similarity=0.073 Sum_probs=126.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQI 184 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~V 184 (309)
+++||++|||||+++||++++++|+++|++|++++|+.....+...+ ...+..+.+|++++ .+.++|++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 57899999999999999999999999999999999864332222221 23567788899876 34679999
Q ss_pred EEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----c-C-CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V-G-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~-~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|||||......+. ++|+..+++|+.++..+++++.+ . + .++|++||...+. +..
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 142 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 142 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence 9999975544432 35788999999999999887643 2 2 3899999986552 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
....|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~ 183 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTD 183 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCH
Confidence 3468999999999999999877 4899999999999765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.2e-21 Score=167.25 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
+++||+++||||+++||++++++|+++|++|++.+|+....++.. +.+ ..+...+.+|++++ .+..
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~-~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAIS-DYL-GANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHH-GGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHh-CCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 468999999999999999999999999999999998644332222 111 23567788999876 2457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
+|++|||||......+. ++|+..+++|+.++..+++++. +.+ .++|++||...+.
T Consensus 79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------------- 142 (243)
T d1q7ba_ 79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM---------------- 142 (243)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------------
Confidence 99999999976554433 3678899999999999998874 334 4899999976552
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 143 ~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~ 186 (243)
T d1q7ba_ 143 GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETD 186 (243)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEech
Confidence 2233468999999999999999877 4899999999999765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.84 E-value=9.2e-21 Score=165.79 Aligned_cols=163 Identities=16% Similarity=0.152 Sum_probs=128.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc---ccccCCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---VHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~---~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
++||+++||||+++||++++++|+++|++|++.+|+....++.. .......++..+.+|++++ .+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998654332221 1222345778899999886 34
Q ss_pred CCCCEEEEcccCCCCCC-C----cCChhHHHHHHHHHHHHHHHHHHH----c-CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----V-GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|++|||||+..... + .++|+..+++|+.|+.++++++.+ . +.++|++||...+
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~-------------- 147 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI-------------- 147 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT--------------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc--------------
Confidence 67999999999754332 2 236788999999999999987633 2 3489999997754
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 148 --~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~ 192 (258)
T d1iy8a_ 148 --RGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTP 192 (258)
T ss_dssp --SBCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSH
T ss_pred --cCCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCH
Confidence 22333478999999999999999877 4899999999999765
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.84 E-value=1.2e-20 Score=165.31 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=128.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
+++||+++||||+++||++++++|+++|++|++.+|+.....+...+.+ ...++..+.+|++++ .+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999986543322222211 234677889999876 24
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCC--cEEEEeccccccCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA--KFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~--r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
..+|++|||||......+. ++|++.+++|+.|+.++++++.+ .+. .|+++||...+
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~-------------- 149 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK-------------- 149 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT--------------
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc--------------
Confidence 5799999999976554433 36788999999999999887643 332 58899997654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|.
T Consensus 150 --~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~ 195 (261)
T d1geea_ 150 --IPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 195 (261)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGG
T ss_pred --ccCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHh
Confidence 23333468999999999999999877 48999999999998763
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.7e-20 Score=163.46 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=128.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
++++|+++||||+++||++++++|+++|++|++.+|+.....+...+.. ...++..+.+|++++ .+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999987544333222211 134677889999876 34
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.++|++|||||......+. ++|+..+++|+.|+..+++++.+ .+ .++|+++|.....
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~-------------- 147 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-------------- 147 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc--------------
Confidence 5799999999975444332 36788999999999999998754 23 3899999865431
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|.
T Consensus 148 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~ 193 (251)
T d1vl8a_ 148 -VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 193 (251)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTT
T ss_pred -ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHH
Confidence 12223468999999999999999877 48999999999998764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.84 E-value=1e-20 Score=164.85 Aligned_cols=166 Identities=12% Similarity=-0.016 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.+++|++|||||+++||++++++|+++|++|++++|+....++...+.- ...++..+.+|++++ .+.
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999986543322221111 134678899999886 345
Q ss_pred CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
.+|++|||||......+. ++|+..+++|+.++..+++++. +.+ .+||++||...+.
T Consensus 87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~--------------- 151 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT--------------- 151 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC---------------
Confidence 799999999975544433 3678999999999999988763 334 4899999977652
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|-.|..
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~ 197 (251)
T d2c07a1 152 -GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT 197 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccc
Confidence 2223468999999999999999876 489999999999988753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.5e-20 Score=163.02 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=127.4
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCE
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQ 183 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~ 183 (309)
+.++||++|||||+++||++++++|+++|++|++++|+....++...+ ...+..+.+|++++ .+..+|+
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 357899999999999999999999999999999999864433222221 23567788899876 4567999
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH-----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|||||......+. ++|+..+++|+.++..+++++.+ .+ .++|++||...+. +.
T Consensus 80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~ 143 (244)
T d1pr9a_ 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AV 143 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CC
T ss_pred EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------cc
Confidence 99999976544432 36788999999999999887643 22 3899999987652 23
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.....|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 144 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~ 185 (244)
T d1pr9a_ 144 TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTS 185 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcCh
Confidence 33468999999999999999877 4899999999999876
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.84 E-value=8.7e-21 Score=166.14 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=127.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~~~~Dl~~~------------~~ 178 (309)
++||++|||||+++||++++++|+++|++|++.+|+.....+.+...+ ...++..+.+|++++ .+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999986433222222111 235778899999876 24
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||......+. ++|+..+++|+.|+.++++++. +.+ .++|++||...+.
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------------- 147 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------------- 147 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee--------------
Confidence 5799999999976554433 3578899999999999888763 334 3899999987652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 148 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 191 (260)
T d1x1ta1 148 --ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTP 191 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-
T ss_pred --ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCCh
Confidence 3334468999999999999999877 4899999999999776
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.3e-20 Score=163.87 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=125.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
++||++|||||+++||++++++|+++|++|++.+++.+..+ ..+. .....+.+|++++ .+..+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~--~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE--VAEA---IGGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH--HHHH---HTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHH---cCCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999998754321 1111 2345678999876 34579
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
|++|||||......+. ++|+..+++|+.|+.++++++.+ .+ .++|++||...+. +
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------------~ 141 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------A 141 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------B
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------------c
Confidence 9999999976544433 35788999999999999998743 33 3899999987652 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~ 184 (248)
T d2d1ya1 142 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE 184 (248)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCc
Confidence 334468999999999999999877 4899999999999765
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1e-20 Score=165.22 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=129.1
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
+.++||+++||||+++||++++++|+++|++|++.+|+....++...+.. ...++..+.+|++++ .+
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999986543322221111 235678899999886 34
Q ss_pred CCCCEEEEcccCCCCCCCc---CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|++|||||......++ ++|+..+++|+.|+.++++.+.+ .+. ++|++||...+
T Consensus 87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~---------------- 150 (255)
T d1fmca_ 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE---------------- 150 (255)
T ss_dssp SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------
T ss_pred CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchh----------------
Confidence 5799999999976543332 35788999999999999887643 333 89999997765
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 151 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 195 (255)
T d1fmca_ 151 NKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTD 195 (255)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSH
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcCh
Confidence 23334578999999999999999977 4899999999999776
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.83 E-value=4.3e-20 Score=162.34 Aligned_cols=166 Identities=16% Similarity=0.169 Sum_probs=128.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||++|||||+++||++++++|+++|++|++++++....++...+.-....+.++.+|++++ .+..
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999999986544333333332345677889999876 3457
Q ss_pred CCEEEEcccCCCCCC--Cc----CChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVH--YK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~--~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+|++|||||...... .. ++|+..+++|+.|+..+++++.+ .+. ++|++||...+..
T Consensus 83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~------------- 149 (268)
T d2bgka1 83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA------------- 149 (268)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC-------------
T ss_pred cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc-------------
Confidence 999999999754332 11 35788999999999999988743 333 8999999765421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|.
T Consensus 150 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~ 194 (268)
T d2bgka1 150 --GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPL 194 (268)
T ss_dssp --CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCC
T ss_pred --ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChH
Confidence 1111247999999999999999877 48999999999998874
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.83 E-value=5.5e-20 Score=160.41 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc--cccccCCCceEEEecccccc-------------c
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP-------------I 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~--~~~~~~~~~v~~~~~Dl~~~-------------~ 177 (309)
++++|+||||||+++||.+++++|+++|++|++++|........ +........+.+..+|++.+ .
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998765443211 12223455788888888632 2
Q ss_pred cCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc--------CCcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
+..+|++|||||.. ..+.++.++++|+.|+.++.+++.+. +.++|++||...+
T Consensus 82 ~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~--------------- 142 (254)
T d1sbya1 82 LKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF--------------- 142 (254)
T ss_dssp HSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT---------------
T ss_pred cCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc---------------
Confidence 35699999999853 34678999999999999999887432 1379999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++...+++.++.+ +||+++.|.||.|..|
T Consensus 143 -~~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~ 187 (254)
T d1sbya1 143 -NAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp -SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence 34444578999999999999999877 4899999999999876
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.8e-20 Score=165.21 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=118.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccC--CCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~--~~D~Vih~A~ 189 (309)
|+|||||||||||++|+++|+++|+ ++.+++.... ...|+.+. .++ ++|+|||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa 63 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE----------------FCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS----------------SCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc----------------ccCcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 6899999999999999999999885 5555543211 11344332 333 5799999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 269 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (309)
.........++...+++|+.++.+++++|++.+.+++++||+.+|+.....+.+|+ .+..|.+.|+.+|..+|..
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y~~~k~~~e~~ 138 (298)
T d1n2sa_ 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKA 138 (298)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred cccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchHhhhhhhhhhh
Confidence 76666677788899999999999999999999999999999999998888888888 6777889999999999998
Q ss_pred HHHHHHhcCCcEEEEEeCceeCC
Q 021681 270 TMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 270 v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
++... ....++|++..|+.
T Consensus 139 ~~~~~----~~~~~~~~~~~~~~ 157 (298)
T d1n2sa_ 139 LQDNC----PKHLIFRTSWVYAG 157 (298)
T ss_dssp HHHHC----SSEEEEEECSEECS
T ss_pred HHhhh----cccccccccceeec
Confidence 77643 44566777666644
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.83 E-value=3.8e-20 Score=161.91 Aligned_cols=164 Identities=15% Similarity=0.062 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+++||++|||||+++||++++++|+++|++|++.+|+....++...+.. ....+..+.+|++++ .+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999986544332222211 235677888999876 233
Q ss_pred -CCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 -EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 -~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||......+. ++|+.++++|+.|+..+.+++.+ .+ .++|++||....
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~--------------- 149 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA--------------- 149 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT---------------
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc---------------
Confidence 599999999975544432 35788999999999999887643 33 389999997654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..|
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 194 (259)
T d2ae2a_ 150 -LAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 194 (259)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSH
T ss_pred -cccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCH
Confidence 22333478999999999999999977 4899999999999765
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.83 E-value=1.7e-20 Score=163.59 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=126.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||+++||||+++||++++++|+++|++|++.+++....++... .+ ..+...+.+|++++ .+..
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA-EL-GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-HH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-Hh-CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999986443322222 22 24566788999876 3457
Q ss_pred CCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||......+. ++|++.+++|+.++..+++++.+ .+.++|++||...+ .+
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~----------------~~ 144 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW----------------LP 144 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT----------------SC
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh----------------cC
Confidence 99999999976544433 35789999999999999888654 34489999998765 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
......|+.+|++.+.+++.++.+ ++|+++.|.||.|..|
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~ 189 (253)
T d1hxha_ 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTP 189 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCH
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCH
Confidence 334468999999999999988865 3599999999999765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.82 E-value=4.1e-20 Score=161.78 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=127.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~ 179 (309)
.++||+++||||+++||++++++|+++|++|++++|+....++...+.. ...++..+.+|++++ .+.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999986443322211111 234678889999876 345
Q ss_pred CCCEEEEcccCCCCC-CCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPV-HYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
.+|++|||||..... .+. ++|+..+++|+.++..+++++.+ .+ .++|++||...+.
T Consensus 82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~-------------- 147 (260)
T d1zema1 82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK-------------- 147 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS--------------
T ss_pred CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc--------------
Confidence 799999999965432 222 35788999999999999888643 23 3899999977652
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+. ||+++.|.||.|-.|
T Consensus 148 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~ 191 (260)
T d1zema1 148 --GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 191 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCc
Confidence 22334689999999999999998774 899999999999765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.82 E-value=5.6e-20 Score=155.56 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=109.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEeccc---cccccCCCCEEEEcccCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---VEPILLEVDQIYHLACPA 191 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl---~~~~~~~~D~Vih~A~~~ 191 (309)
|+|||||||||||++|+++|+++|+ +|+++.|..... ...++....|+ .+.....+|.||||+|..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------cccccccccchhhhhhccccchheeeeeeeee
Confidence 6999999999999999999999998 566655532211 12333333333 333455689999999742
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLT 270 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (309)
.....+.....+.|+.++.+++++|++.++ +++++||..+++. +.+.|..+|..+|+.+
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~~l 133 (212)
T d2a35a1 74 --IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQAL 133 (212)
T ss_dssp --HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHHHH
T ss_pred --ccccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhhhc
Confidence 222345567889999999999999999997 7999999887642 2367999999999887
Q ss_pred HHHHHhcCC-cEEEEEeCceeCCCCC
Q 021681 271 MDYHRGAGV-EVRIARIFNTYGPRMC 295 (309)
Q Consensus 271 ~~~a~~~gi-~~~ivRp~~V~Gp~~~ 295 (309)
+. .++ +++++||+.||||...
T Consensus 134 ~~----~~~~~~~I~Rp~~v~G~~~~ 155 (212)
T d2a35a1 134 QE----QGWPQLTIARPSLLFGPREE 155 (212)
T ss_dssp TT----SCCSEEEEEECCSEESTTSC
T ss_pred cc----cccccceeeCCcceeCCccc
Confidence 54 455 5999999999999753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.7e-20 Score=161.40 Aligned_cols=165 Identities=10% Similarity=-0.007 Sum_probs=127.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
....||+++||||+++||++++++|+++|++|++.+|+..+.++...+. -...++..+.+|++++ .+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999998654332222111 1235688899999887 34
Q ss_pred CCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||........+ .++.++++|+.|+.++++++. +.+. ++|++||...+
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~--------------- 147 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH--------------- 147 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C---------------
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc---------------
Confidence 56999999999765544432 467889999999999988764 3443 89999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh------cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG------AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~------~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.||++.+.+.+.++.+ .|++++.+.||.|-.+
T Consensus 148 -~~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~ 195 (244)
T d1yb1a_ 148 -VSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 195 (244)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence 23333467999999999999999875 3799999999988665
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=5.3e-20 Score=160.97 Aligned_cols=165 Identities=14% Similarity=0.090 Sum_probs=119.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc-
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL- 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~- 178 (309)
++++|++|||||+++||.+++++|+++|++|++++|+....++...+. -...++..+.+|++++ .+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999999999999998654433222211 1234678889999876 23
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|++|||||......+. ++|+..+++|+.|+..+++++.+ .+ .++|++||....
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~--------------- 149 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV--------------- 149 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccc---------------
Confidence 3599999999976544432 35788999999999999987643 33 489999997654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|-
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~ 195 (259)
T d1xq1a_ 150 -VSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPL 195 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---
T ss_pred -ccccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHH
Confidence 22333468999999999999999877 48999999999997763
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.82 E-value=4.2e-20 Score=161.47 Aligned_cols=161 Identities=16% Similarity=0.071 Sum_probs=126.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLEVD 182 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~~D 182 (309)
||++|||||+++||++++++|+++|++|++.+|+....++...+. -...++..+.+|++++ .+..+|
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD 81 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 789999999999999999999999999999998644333222211 1234688899999887 345799
Q ss_pred EEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc------C-CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~------~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
++|||||......+. ++|+..+++|+.|+.++++++.+. + .++|++||...+ .
T Consensus 82 ilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~----------------~ 145 (257)
T d2rhca1 82 VLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK----------------Q 145 (257)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT----------------S
T ss_pred EEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc----------------c
Confidence 999999976544432 357899999999999999987542 3 379999997765 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|++.+.+++.++.+. ||+++.|.||.|-.|
T Consensus 146 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 189 (257)
T d2rhca1 146 GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETP 189 (257)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCH
Confidence 33344789999999999999999874 799999999999654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.81 E-value=5.9e-20 Score=160.75 Aligned_cols=175 Identities=16% Similarity=0.060 Sum_probs=129.1
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------ 176 (309)
.++++||++|||||+++||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999997655443322221 135678899999877
Q ss_pred ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----c-CC-cEEEEeccccccCCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V-GA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~-~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
.+..+|++|||||........ ++|++.+++|+.|+.++++++.+ . +. .++.++|...+.......
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~----- 158 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL----- 158 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET-----
T ss_pred HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc-----
Confidence 345799999999975444332 35788999999999999887643 2 23 566666665442211000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
........|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|..
T Consensus 159 ----~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~ 205 (260)
T d1h5qa_ 159 ----NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT 205 (260)
T ss_dssp ----TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG
T ss_pred ----ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcch
Confidence 11123367999999999999999876 489999999999977643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.81 E-value=1.1e-19 Score=160.11 Aligned_cols=164 Identities=14% Similarity=0.075 Sum_probs=124.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----cCCCceEEEecccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~------------ 176 (309)
.++||++|||||+++||++++++|+++|++|++.+|+....++...+. ....++..+.+|++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998654332222111 1234688899999876
Q ss_pred ccCCCCEEEEcccCCCCCCCc-----C---ChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEecc-ccccCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK-----Y---NPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTS-EVYGDPLEHPQK 243 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~-----~---~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~-~vy~~~~~~~~~ 243 (309)
.+.++|++|||||......+. . .|...+++|+.++.++++++.+ .+..+|+++|. +..
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~--------- 152 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP--------- 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---------
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc---------
Confidence 345799999999976543321 1 3788899999999999988644 34466666654 333
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 153 -------~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 197 (272)
T d1xkqa_ 153 -------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETG 197 (272)
T ss_dssp -------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSS
T ss_pred -------cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcch
Confidence 12233467999999999999999977 4899999999999765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.81 E-value=6.9e-20 Score=159.86 Aligned_cols=160 Identities=20% Similarity=0.092 Sum_probs=123.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------ccCCCCE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
|.+|||||+++||++++++|+++|++|++.+|+....++...+.. ...++..+.+|++++ .+..+|+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 567999999999999999999999999999986543322221111 234678889999886 3467999
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC--CcEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
+|||||......+. ++|+.++++|+.|+.++++++.+ .+ .+++++||...+ .+.
T Consensus 82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----------------~~~ 145 (255)
T d1gega_ 82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH----------------VGN 145 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT----------------SCC
T ss_pred EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc----------------ccC
Confidence 99999975544332 35788999999999999988643 23 369999997755 233
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.....|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 187 (255)
T d1gega_ 146 PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP 187 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH
T ss_pred cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh
Confidence 33468999999999999999877 4899999999998654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.81 E-value=1.7e-19 Score=159.13 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||++|||||+++||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++++ .+..
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999998644332222111 24677888999776 3457
Q ss_pred CCEEEEcccCCCCCCC-----cC----ChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY-----KY----NPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~-----~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+|++|||||....... .+ +|++++++|+.|+..+++++. +.+.++|+++|...+
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~------------- 146 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGF------------- 146 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT-------------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhc-------------
Confidence 9999999996543221 11 378899999999999988763 445689999887644
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcEEEEEeCceeCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGP 292 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~--gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+. +|+++.|.||.|-.|
T Consensus 147 ---~~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~ 190 (276)
T d1bdba_ 147 ---YPNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSD 190 (276)
T ss_dssp ---STTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSC
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecC
Confidence 122234679999999999999998774 599999999999765
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2.3e-19 Score=154.59 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~ 187 (309)
+++|++|||||+++||++++++|+++|++|++.+|+.+..++ ...+++.+|+.+. .+.++|++|||
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~--------~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR--------SGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH--------TCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh--------cCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 578999999999999999999999999999999985322211 1234566777654 45679999999
Q ss_pred ccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCH
Q 021681 188 ACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSC 258 (309)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (309)
||......+. ++|++.+++|+.++..+++++. +.+. ++|+++|.... .+......
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~----------------~~~~~~~~ 137 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVI----------------SPIENLYT 137 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------SCCTTBHH
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccc----------------cccccccc
Confidence 9965443332 3578889999999999888764 3343 89999997655 23334468
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 259 YDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
|+.+|.+.+.+++.++.+ +||+++.|.||.+-.|.
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~ 175 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER 175 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhh
Confidence 999999999999999877 48999999999998764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.81 E-value=1.2e-19 Score=159.15 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=122.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----cCCCceEEEecccccc------------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~------------ 176 (309)
.+++|++|||||+++||++++++|+++|++|++.+|+....++...+. ....++..+.+|++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998654333222111 1234688899999876
Q ss_pred ccCCCCEEEEcccCCCCCC--------CcCChhHHHHHHHHHHHHHHHHHHH----cCCcEEEEeccc-cccCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSE-VYGDPLEHPQK 243 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~r~v~iSS~~-vy~~~~~~~~~ 243 (309)
.+..+|++|||||...... ..++|+..+++|+.|+.++++++.+ .+..+|+++|.. .+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~--------- 152 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL--------- 152 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS---------
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc---------
Confidence 3457999999998643222 1235788999999999999888754 345677666654 23
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 244 ETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|.
T Consensus 153 -------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~ 198 (264)
T d1spxa_ 153 -------HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGF 198 (264)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC
T ss_pred -------ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcc
Confidence 12223467999999999999999877 48999999999997663
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2e-19 Score=157.07 Aligned_cols=167 Identities=14% Similarity=0.037 Sum_probs=127.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc---ccCCCceEEEecccccc------------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP------------ 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~---~~~~~~v~~~~~Dl~~~------------ 176 (309)
..+++|++|||||+++||.+++++|+++|++|++.+|+....++...+ .....++..+.+|++++
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999875433322221 11234778889999887
Q ss_pred ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC---CcEEEEeccccccCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG---AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~---~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+.++|++|||||........ ++++..+++|+.++.++.+++. +.+ .++|++||...+..
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~--------- 156 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV--------- 156 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC---------
Confidence 346799999999975444332 3578899999999999877763 333 48999999775421
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
.|......|+.+|.+.+.+++.++.+ ++|+++.|.||.+-.+
T Consensus 157 -----~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~ 203 (257)
T d1xg5a_ 157 -----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 203 (257)
T ss_dssp -----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred -----CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCCh
Confidence 12223356999999999999998864 4899999999988654
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.81 E-value=6.6e-20 Score=158.95 Aligned_cols=159 Identities=13% Similarity=0.032 Sum_probs=123.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------ccCCCCE
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEVDQ 183 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~~~~D~ 183 (309)
.||||||+++||++++++|+++|++|++.++......+.+.+.+ ...++..+.+|++++ .+..+|+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV 82 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 79999999999999999999999999987754332222222211 134677889999876 3457999
Q ss_pred EEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
+|||||......+. ++|++.+++|+.|+.++++++.+ .+ .++|++||...+- +..
T Consensus 83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------------~~~ 146 (244)
T d1edoa_ 83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------GNI 146 (244)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------CCT
T ss_pred cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------------CCC
Confidence 99999976544433 36788999999999999887643 33 4999999977652 223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
....|+.+|.+.+.+.+.++.+ +||+++.|.||.+-.|
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~ 187 (244)
T d1edoa_ 147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASD 187 (244)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSH
T ss_pred CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccH
Confidence 3468999999999999999987 4899999999999765
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.8e-19 Score=157.05 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=123.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc---ccccCCCceEEEecccccc------------ccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---VHHFRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~---~~~~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
+||++|||||+++||++++++|+++|++|++++|+.....+.. .+.....++..+.+|++++ .+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999998755433222 2222345788899999886 345
Q ss_pred CCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc----C----CcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV----G----AKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~----~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
.+|++|||||... ..++++.+++|+.++.++.+++.+. + .+||++||...+ .
T Consensus 82 ~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~----------------~ 141 (254)
T d2gdza1 82 RLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL----------------M 141 (254)
T ss_dssp CCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT----------------S
T ss_pred CcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc----------------c
Confidence 7999999998643 3578999999999999888876432 1 269999998765 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH--HHHh---cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMD--YHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~--~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++. ++.+ +||+++.|.||.|-.|
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~ 187 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA 187 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCCh
Confidence 333456899999999999885 3433 5899999999998654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.80 E-value=2.8e-19 Score=156.19 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc-
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL- 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~- 178 (309)
+++||++|||||+++||++++++|+++|++|++++|+....++..... .....+..+.+|+.++ .+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999998754332222111 1235677888999776 22
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|+++||||......+. ++|..++++|+.++..+.+++.+ .+ .++|++||....
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~--------------- 147 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGF--------------- 147 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGT---------------
T ss_pred CCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccc---------------
Confidence 2489999999976544433 36889999999999999887643 23 389999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.+..|.
T Consensus 148 -~~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~ 193 (258)
T d1ae1a_ 148 -SALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPL 193 (258)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---
T ss_pred -cccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcc
Confidence 23334578999999999999999877 48999999999998764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.80 E-value=1.6e-19 Score=159.09 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=124.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc----cCCCceEEEecccccc------------c
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~------------~ 177 (309)
++||+++||||+++||++++++|+++|++|++.+|+....++...+. ....++..+.+|++++ .
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998654332221111 1234688899999886 3
Q ss_pred cCCCCEEEEcccCCCCCC--C----cCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEeccccccCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
+..+|++|||||...... . .++|+..+++|+.++..+++++.+ .+. +++++||...+
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~------------ 149 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP------------ 149 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS------------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcc------------
Confidence 457999999998643222 1 124788999999999999888754 333 67777775543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 150 ----~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~ 194 (274)
T d1xhla_ 150 ----QAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATG 194 (274)
T ss_dssp ----SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSS
T ss_pred ----ccCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCc
Confidence 12233468999999999999999877 4899999999999776
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.5e-19 Score=158.71 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=126.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cccc---cCCCceEEEecccccc----------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHH---FRNPRFELIRHDVVEP---------- 176 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~~---~~~~~v~~~~~Dl~~~---------- 176 (309)
.++||++|||||+++||++++++|+++|++|++.+|+.....+. +... ....++..+.+|++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999875433222 1111 1235788899999877
Q ss_pred --ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc-----CCcEEEEeccccccCCCCCCCCCC
Q 021681 177 --ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 --~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----~~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|++|||||......+. ++|+..+++|+.|+..+++++.+. +.++|++|+....
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~----------- 157 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----------- 157 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-----------
Confidence 245799999999875444332 367889999999999999987543 2368877765432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
.......|+.+|.+.+.+++.++.+. ||+++.|.||.|..|.
T Consensus 158 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~ 202 (297)
T d1yxma1 158 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT 202 (297)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred ------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcc
Confidence 12234689999999999999999774 8999999999998763
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.79 E-value=3.3e-19 Score=154.11 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=123.8
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCe-------EEEEecCCCCccccccccc-CCCceEEEecccccc------------c
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDE-------VIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~-------V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~ 177 (309)
.||||||+++||++++++|+++|++ |++.+|+....++...+.. ....+..+.+|++++ .
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999987 7777776443322221111 235677889999886 3
Q ss_pred cCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
+..+|++|||||......+. ++++..+++|+.|+..+++++. +.+ .++|++||...+
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~-------------- 148 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT-------------- 148 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT--------------
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhc--------------
Confidence 45799999999976544433 3678899999999999988864 334 489999998765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+......|+.+|.+.+.+.+.++.+ +||+++.|.||.|-.|-
T Consensus 149 --~~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~ 194 (240)
T d2bd0a1 149 --KAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM 194 (240)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTT
T ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCch
Confidence 23334578999999999999999876 48999999999998764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.79 E-value=3.4e-19 Score=154.19 Aligned_cols=161 Identities=19% Similarity=0.130 Sum_probs=123.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~~ 181 (309)
++||++|||||+++||++++++|+++|++|++.+|+.....+...+. ..++..+.+|+.++ .+.++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999999999998765443332222 24677789999876 34679
Q ss_pred CEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcCC--c-EEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVGA--K-FLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 182 D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~--r-~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
|++|||||......+. ++|...+++|+.++.++++++.+.-. . ++++||.+.. +..
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-----------------~~~ 143 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-----------------GAF 143 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-----------------CHH
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-----------------ccc
Confidence 9999999875444332 25788999999999999999876532 3 4444444322 112
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
....|+.+|++.|.+++.++.+. |++++.|.||.|-.|.
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~ 185 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPM 185 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGG
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHH
Confidence 23579999999999999999884 7999999999997663
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-18 Score=151.29 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vi 185 (309)
++||++|||||+++||+++++.|+++|++|++++|+....++ ......+.....|+..+ .+..+|++|
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lV 79 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE----LEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG----GGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHhccCCceeeeeccccccccccccccccceeEE
Confidence 789999999999999999999999999999999986433222 22234566666666544 345799999
Q ss_pred EcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHH----cC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCC
Q 021681 186 HLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGER 256 (309)
Q Consensus 186 h~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (309)
||||......+. ++|+..+++|+.++..+++++.+ .+ .++|++||....- .+....
T Consensus 80 n~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------------~~~~~~ 144 (245)
T d2ag5a1 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------------KGVVNR 144 (245)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------------BCCTTB
T ss_pred ecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------------CCccch
Confidence 999976554333 36788999999999999888653 23 3899999864310 123344
Q ss_pred CHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 257 SCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
..|+.+|++.+.+++.++.+ +||+++.|.||.|-+|.
T Consensus 145 ~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~ 184 (245)
T d2ag5a1 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS 184 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechh
Confidence 78999999999999999977 48999999999998763
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=3.2e-19 Score=155.53 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=122.3
Q ss_pred CCCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~ 178 (309)
+++||++|||||+| +||++++++|+++|++|++.+++...................+.+|++++ .+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF 84 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc
Confidence 57899999999998 89999999999999999988876432221111111234566788999876 34
Q ss_pred CCCCEEEEcccCCCCCC--------CcCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
.++|++||||+...... ..+++...+++|+.++..+++.+.+. +.++|++||....
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------- 151 (256)
T d1ulua_ 85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------- 151 (256)
T ss_dssp SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-------------
T ss_pred CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-------------
Confidence 56999999998643111 11246778999999999999987653 2479999997765
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
.+......|+.+|.+.+.+++.++.+ +||+++.|.||.|..+..
T Consensus 152 ---~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~ 198 (256)
T d1ulua_ 152 ---KVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAA 198 (256)
T ss_dssp ---SBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccc
Confidence 23334478999999999999999977 489999999999987643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.78 E-value=1.5e-18 Score=152.64 Aligned_cols=168 Identities=17% Similarity=0.123 Sum_probs=128.1
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc-----------
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP----------- 176 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~----------- 176 (309)
....++||++|||||+++||++++++|+++|++|++.+++.....+...+.+ ....+..+.+|+.++
T Consensus 12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 3445899999999999999999999999999999999876443322222211 235678889999876
Q ss_pred -ccCCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCC
Q 021681 177 -ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWG 248 (309)
Q Consensus 177 -~~~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~ 248 (309)
.+..+|++||||+........ +++...+++|+.++..+++++.+. +.++++++|.....
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~------------- 158 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA------------- 158 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-------------
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-------------
Confidence 345799999999875544433 257888999999999999998764 23778887754321
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 249 NVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ +||+++.|.||.|-.|
T Consensus 159 --~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~ 203 (272)
T d1g0oa_ 159 --KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD 203 (272)
T ss_dssp --SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCCh
Confidence 12334467999999999999999877 4899999999999654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=8.4e-19 Score=156.50 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=119.0
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccc---cccCCCceEEEecccccc-------
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-----DNLV---HHFRNPRFELIRHDVVEP------- 176 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-----~~~~---~~~~~~~v~~~~~Dl~~~------- 176 (309)
+.++||++|||||+++||++++++|+++|++|++.++...... +.+. ..+.. ......+|+.+.
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-RGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-TTCEEEEECCCGGGHHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh-cccccccccchHHHHHHHH
Confidence 3578999999999999999999999999999999987643221 1111 11110 111122333222
Q ss_pred -----ccCCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCC
Q 021681 177 -----ILLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQ 242 (309)
Q Consensus 177 -----~~~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~ 242 (309)
.+.++|++|||||+.....+.+ +|+..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~------- 154 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY------- 154 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC-------
Confidence 3457999999999865544333 578899999999999988864 344 4999999976542
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 243 KETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+.+.++.+ +||+++.|.||.+-.+
T Consensus 155 ---------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~ 198 (302)
T d1gz6a_ 155 ---------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRM 198 (302)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTT
T ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcc
Confidence 2223468999999999999999877 4899999999977443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.77 E-value=3.8e-18 Score=147.97 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=122.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHH---CCCeEEEEecCCCCcccccccccCCCceEEEeccccccc--------------
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------- 177 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~---~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-------------- 177 (309)
.||+||||||+++||.+++++|++ +|++|++.+|+....++.....-...++.++.+|++++.
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 378999999999999999999974 688999999976554322111112467889999998761
Q ss_pred cCCCCEEEEcccCCCCCC-Cc----CChhHHHHHHHHHHHHHHHHHHH----c------------CCcEEEEeccccccC
Q 021681 178 LLEVDQIYHLACPASPVH-YK----YNPVKTIKTNVMGTLNMLGLAKR----V------------GAKFLLTSTSEVYGD 236 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~~----~------------~~r~v~iSS~~vy~~ 236 (309)
...+|++|||||...... .. ++++..+++|+.|+..+++++.. . +.++|++||....-.
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 245999999999754332 21 23677899999999999887532 1 237999999653210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
. .+......|+.||++...+++.++.+ .|++++.+.||.|-.+-
T Consensus 161 --~-----------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 161 --G-----------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp --T-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred --C-----------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence 0 23333468999999999999998866 48999999999998764
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.4e-18 Score=151.06 Aligned_cols=163 Identities=11% Similarity=0.105 Sum_probs=124.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc--cCCCceEEEecccccc------------ccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------ILL 179 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~--~~~~~v~~~~~Dl~~~------------~~~ 179 (309)
++||++|||||+++||++++++|+++|++|++++|+....++...+. ........+.+|+.+. ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999998754433322221 1234566677776554 335
Q ss_pred CCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHH----HcCCcEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 180 ~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
.+|++++|||........+ ++...+++|+.|+..+.+.+. +.+.++|++||...+ .
T Consensus 92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~----------------~ 155 (269)
T d1xu9a_ 92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK----------------V 155 (269)
T ss_dssp SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT----------------S
T ss_pred CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc----------------C
Confidence 6999999998765444332 457789999999998888764 345689999997755 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
+......|+.||++.+.+.+.++.+ .+|+++.+.||.|-.+
T Consensus 156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~ 201 (269)
T d1xu9a_ 156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 201 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc
Confidence 3344578999999999999999866 3689999999998654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.77 E-value=7.9e-19 Score=153.39 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=124.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------cc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~~ 178 (309)
.+.||+||||||+++||++++++|+++|++|++.++......+...+.+ ...++..+.+|++++ .+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999987765433322222222 234678899999876 33
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEecc-ccccCCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTS-EVYGDPLEHPQKETYWGNV 250 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~-~vy~~~~~~~~~E~~~~~~ 250 (309)
..+|++|||||........ ++++..+++|+.+..++++++.+.- .++++++|. +.+.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~--------------- 147 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT--------------- 147 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC---------------
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc---------------
Confidence 5699999999976544433 3578899999999999999987642 256666664 3331
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 251 NPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.+-.|
T Consensus 148 -~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~ 191 (259)
T d1ja9a_ 148 -GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTD 191 (259)
T ss_dssp -SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccCh
Confidence 2223468999999999999999877 4899999999998653
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=5.9e-18 Score=145.72 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccc-----cc-------cc--CC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-----EP-------IL--LE 180 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-----~~-------~~--~~ 180 (309)
+||+||||||+|+||++++++|+++|++|+++++......... .....|.. +. .+ .+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASAS---------VIVKMTDSFTEQADQVTAEVGKLLGDQK 71 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEE---------EECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccc---------ceeecccCcHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999987543322111 11111111 11 11 24
Q ss_pred CCEEEEcccCCCCCCC-----cCChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCC
Q 021681 181 VDQIYHLACPASPVHY-----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (309)
+|++|||||....... .++++..+++|+.++.++++++.+. +.++|++||...+ .+
T Consensus 72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~----------------~~ 135 (236)
T d1dhra_ 72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL----------------DG 135 (236)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG----------------SC
T ss_pred ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc----------------CC
Confidence 8999999985432221 1246778999999999999988754 3489999998765 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 253 IGERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
......|+.||++.+.+++.++.+ .|++++.|.||.|..|
T Consensus 136 ~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~ 180 (236)
T d1dhra_ 136 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 180 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC
Confidence 334468999999999999999865 3799999999999876
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8e-18 Score=148.93 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=121.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc--ccc----cc-ccCCCceEEEecccccc----------cc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNL----VH-HFRNPRFELIRHDVVEP----------IL 178 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~--~~~----~~-~~~~~~v~~~~~Dl~~~----------~~ 178 (309)
.|.||||||+++||++++++|+++|++|+.+++..+..+ +.+ .. ......+..+.+|++++ ..
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 467899999999999999999999998766654322211 111 11 11345788999999876 12
Q ss_pred CCCCEEEEcccCCCCCCCc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGN 249 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~ 249 (309)
..+|+++||||........ ++++..+++|+.|+.++++++. +.+ .++|++||...+
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~--------------- 146 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL--------------- 146 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT---------------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc---------------
Confidence 4599999999976554433 3578889999999999988763 444 489999998655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 250 VNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.||++.+.+.+.++.+ +|++++.|.||.|-.+
T Consensus 147 -~~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 147 -MGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 23334468999999999999999877 4899999999999765
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.3e-17 Score=144.46 Aligned_cols=163 Identities=19% Similarity=0.201 Sum_probs=122.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------------ccCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
.++||++|||||+++||.+++++|+++|++|++++|+....++...+. .........|+.+. ....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR 79 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCCccccccccccccccccccccccccccc
Confidence 368999999999999999999999999999999998765544333222 23445555555443 2345
Q ss_pred CCEEEEcccCCCCCCC----------cCChhHHHHHHHHHHHHHHHHHHHc----------C-CcEEEEeccccccCCCC
Q 021681 181 VDQIYHLACPASPVHY----------KYNPVKTIKTNVMGTLNMLGLAKRV----------G-AKFLLTSTSEVYGDPLE 239 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~----------~-~r~v~iSS~~vy~~~~~ 239 (309)
.|.++++++....... .++++..+++|+.++.++.+++.+. + .++|++||...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---- 155 (248)
T d2o23a1 80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---- 155 (248)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH----
T ss_pred ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc----
Confidence 8999988765433221 1257788999999999999998542 1 2699999987652
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCC
Q 021681 240 HPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (309)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+. ||+++.|.||.+..+.
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~ 200 (248)
T d2o23a1 156 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 200 (248)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecch
Confidence 33344789999999999999999774 8999999999998764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=4.4e-18 Score=148.54 Aligned_cols=164 Identities=15% Similarity=0.029 Sum_probs=126.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHH---CCCeEEEEecCCCCcccc---cccccCCCceEEEeccccccc---------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEPI--------- 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~---~g~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~Dl~~~~--------- 177 (309)
.++||+++||||+++||.+++++|++ +|++|++++|+....++. +.......++..+.+|++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 46889999999999999999999986 699999999865433222 112223457888999998761
Q ss_pred -------cCCCCEEEEcccCCCCCC---Cc----CChhHHHHHHHHHHHHHHHHHHHc----C---CcEEEEeccccccC
Q 021681 178 -------LLEVDQIYHLACPASPVH---YK----YNPVKTIKTNVMGTLNMLGLAKRV----G---AKFLLTSTSEVYGD 236 (309)
Q Consensus 178 -------~~~~D~Vih~A~~~~~~~---~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~---~r~v~iSS~~vy~~ 236 (309)
...+|+++||||...... .. ++++.++++|+.|+..+++++.+. + .++|++||...+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~-- 160 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-- 160 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc--
Confidence 124689999998654322 11 247788999999999999998653 2 279999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCcEEEEEeCceeCC
Q 021681 237 PLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGP 292 (309)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-~gi~~~ivRp~~V~Gp 292 (309)
.+......|+.+|++.+.+++.++.+ .||+++.|.||.|..+
T Consensus 161 --------------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 161 --------------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp --------------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred --------------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 23444578999999999999999876 4899999999999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=148.63 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=122.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc--CCCceEEEecccccc------------c
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~------------~ 177 (309)
..++||++|||||+|+||++++++|+++|++|++++|+.....+...+.. ....+..+.+|+.++ .
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 46899999999999999999999999999999999987544333222211 235677888999776 2
Q ss_pred cCCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHH----c-CC-cEEEEeccccccCCCCCCCCCCCC
Q 021681 178 LLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----V-GA-KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 178 ~~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~-~~-r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
+..+|++|||||......... ++...+.+|+.+...+...+.. . +. .++.++|.....
T Consensus 101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------ 168 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------ 168 (294)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------
Confidence 356999999999765444332 4567788898888877665422 1 22 577777765432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|.
T Consensus 169 ----~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~ 213 (294)
T d1w6ua_ 169 ----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKG 213 (294)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccch
Confidence 2223467999999999999999877 48999999999998764
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.74 E-value=4.9e-18 Score=147.68 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=116.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-------ccCCCCEEEEcccC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYHLACP 190 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-------~~~~~D~Vih~A~~ 190 (309)
++|||||+++||++++++|+++|++|++.+|+....++..........+++.+.+-.+. .+..+|++|||||.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~ 81 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIF 81 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 78999999999999999999999999999886544322111111112333333222111 34579999999986
Q ss_pred CCCCC-Cc----CChhHHHHHHHHHHHHHHHHHH----HcC-CcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHH
Q 021681 191 ASPVH-YK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 260 (309)
Q Consensus 191 ~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (309)
..... +. ++|+..+++|+.++.++++++. +.+ .++|++||...+. +......|+
T Consensus 82 ~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~~~~~Y~ 145 (252)
T d1zmta1 82 APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKELSTYT 145 (252)
T ss_dssp CCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTTCHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------ccccccccc
Confidence 43322 22 3578899999999999988763 333 5899999987652 333346899
Q ss_pred HHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 261 EGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 261 ~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
.+|.+.+.+++.++.+ +||+++.|.||.|-.+.
T Consensus 146 asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~ 181 (252)
T d1zmta1 146 SARAGACTLANALSKELGEYNIPVFAIGPNYLHSED 181 (252)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBT
T ss_pred cccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcc
Confidence 9999999999999877 48999999999998764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.74 E-value=1.9e-17 Score=142.40 Aligned_cols=151 Identities=21% Similarity=0.171 Sum_probs=111.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc--------------ccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------------ILLEVD 182 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------------~~~~~D 182 (309)
.+||||||+|+||++++++|+++|++|+++++......... ..+.+|..+. ....+|
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD 73 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSN---------ILVDGNKNWTEQEQSILEQTASSLQGSQVD 73 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEE---------EECCTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccccc---------ceeccccCchhHHHHHHHHHHHHhcCCCee
Confidence 47899999999999999999999999999998654322111 1112222111 224589
Q ss_pred EEEEcccCCCCCC-Cc----CChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEeccccccCCCCCCCCCCCCCCCCCCC
Q 021681 183 QIYHLACPASPVH-YK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254 (309)
Q Consensus 183 ~Vih~A~~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (309)
++|||||...... .. +.++.++++|+.++..+++++.+. +.++|++||...+ .+..
T Consensus 74 ~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~----------------~~~~ 137 (235)
T d1ooea_ 74 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM----------------GPTP 137 (235)
T ss_dssp EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG----------------SCCT
T ss_pred EEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc----------------CCcc
Confidence 9999999643322 11 245677999999999999988664 3489999997765 2333
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh-----cCCcEEEEEeCceeCC
Q 021681 255 ERSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (309)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~a~~-----~gi~~~ivRp~~V~Gp 292 (309)
....|+.+|++.+.+++.++.+ .+++++.+.||.+-.|
T Consensus 138 ~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~ 180 (235)
T d1ooea_ 138 SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP 180 (235)
T ss_dssp TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc
Confidence 4578999999999999999866 3788999999998765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.6e-18 Score=147.92 Aligned_cols=177 Identities=16% Similarity=0.033 Sum_probs=123.7
Q ss_pred CCeE-EEEcCCchhHHHHHHHHHHC-CCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------ccCC
Q 021681 116 RLRI-VVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------ILLE 180 (309)
Q Consensus 116 ~k~V-lITGatG~IG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~~~ 180 (309)
||+| |||||+++||.+++++|+++ |++|++.+|+....++...+. -....+.++.+|+.+. .+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 5555 99999999999999999986 889999998765433222221 1235678899999876 2356
Q ss_pred CCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHc---CCcEEEEecccccc-CCCCCC----------C
Q 021681 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG-DPLEHP----------Q 242 (309)
Q Consensus 181 ~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~r~v~iSS~~vy~-~~~~~~----------~ 242 (309)
+|++|||||+.......+ +++..+++|+.|+..+++++.+. +.++|++||..... .....+ .
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~ 161 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI 161 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccccc
Confidence 999999999865544333 46678999999999999998653 24899999964321 100000 0
Q ss_pred CC--------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-------cCCcEEEEEeCceeCC
Q 021681 243 KE--------------TYWGNVNPIGERSCYDEGKRTAETLTMDYHRG-------AGVEVRIARIFNTYGP 292 (309)
Q Consensus 243 ~E--------------~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~-------~gi~~~ivRp~~V~Gp 292 (309)
.+ ..........+...|+.||++...+.+.++.+ .|++++.+.||.|-.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 162 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred chhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 00 00000122334568999999999988877654 2899999999999765
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.72 E-value=5.9e-17 Score=140.52 Aligned_cols=167 Identities=13% Similarity=0.004 Sum_probs=117.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEecccccc------------cc--
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL-- 178 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------------~~-- 178 (309)
+.|+||||||+++||.+++++|+++|+ .|++..|+.....+ +.+ ....++.++.+|++++ .+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~-l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKS-IKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHT-CCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH-HHH-hhCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 347999999999999999999999996 67777776543322 222 2345788999999876 11
Q ss_pred CCCCEEEEcccCCCCCC-C-c---CChhHHHHHHHHHHHHHHHHHHH----c------------CCcEEEEeccccccCC
Q 021681 179 LEVDQIYHLACPASPVH-Y-K---YNPVKTIKTNVMGTLNMLGLAKR----V------------GAKFLLTSTSEVYGDP 237 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~-~-~---~~~~~~~~~Nv~gt~~ll~~a~~----~------------~~r~v~iSS~~vy~~~ 237 (309)
..+|++|||||...... . + +++++.+++|+.|+.++++++.. . ..+++.+|+...+-..
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 159 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence 24999999999754322 1 1 24678999999999999887632 1 1257777775443211
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 238 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
... .....+...|+.||++...+++.++.+ .||+++.+.||.|-.+
T Consensus 160 ~~~---------~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~ 208 (250)
T d1yo6a1 160 NTS---------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp CCS---------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---
T ss_pred Ccc---------cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC
Confidence 100 012233457999999999999999876 4899999999998654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.72 E-value=4e-17 Score=142.16 Aligned_cols=165 Identities=17% Similarity=0.204 Sum_probs=120.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc--cc-cccc-cCCCceEEEeccccccc----------
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DN-LVHH-FRNPRFELIRHDVVEPI---------- 177 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~--~~-~~~~-~~~~~v~~~~~Dl~~~~---------- 177 (309)
+..+++||||||+|+||.+++++|+++|+ +|+++.|+....+ .. ..+. ....++.++.+|++++.
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~ 85 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 85 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccc
Confidence 34556999999999999999999999998 5777777532221 11 1111 12357889999998761
Q ss_pred -cCCCCEEEEcccCCCCCCCcC----ChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCC
Q 021681 178 -LLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (309)
Q Consensus 178 -~~~~D~Vih~A~~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (309)
...+|.||||||........+ ++...+++|+.|+.++.+++.+.+. ++|++||....-
T Consensus 86 ~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~---------------- 149 (259)
T d2fr1a1 86 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF---------------- 149 (259)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------
T ss_pred ccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------------
Confidence 124899999999765544332 4567789999999999998877665 899999976542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 252 PIGERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|...+.+++.+. ..|++++.|.||.+.++++
T Consensus 150 g~~~~~~YaAaka~l~~la~~~~-~~Gi~v~~I~pg~~~~~g~ 191 (259)
T d2fr1a1 150 GAPGLGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGM 191 (259)
T ss_dssp CCTTCTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC----
T ss_pred CCcccHHHHHHHHhHHHHHHHHH-hCCCCEEECCCCcccCCcc
Confidence 22223579999999999988875 4689999999999887764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=1.4e-17 Score=141.43 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCe--EEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~--V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
.+++|||||||||||++++++|+++|++ |+.+.|+...... ....++++.+|+.+. .++++|.|||+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK------IGGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH------TTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh------ccCCcEEEEeeeccccccccccccceeeEEE
Confidence 3579999999999999999999999975 4555554322111 123556777887665 57889999999
Q ss_pred ccCCCCCCC-------------cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCC
Q 021681 188 ACPASPVHY-------------KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (309)
Q Consensus 188 A~~~~~~~~-------------~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (309)
|+....... .........+|+.|+.+++..+..... ...+.|+...+..... ...
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~ 144 (252)
T d2q46a1 76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LNK 144 (252)
T ss_dssp CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GGG
T ss_pred EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------ccc
Confidence 985432111 123456678999999999999988876 6777777665532110 011
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCceeCCCCC
Q 021681 254 GERSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (309)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~~ 295 (309)
.....|...+...+. +..+.+++++++||+++|||...
T Consensus 145 ~~~~~~~~~~~~~~~----~~~~~~~~~~ilRp~~v~g~~~~ 182 (252)
T d2q46a1 145 LGNGNILVWKRKAEQ----YLADSGTPYTIIRAGGLLDKEGG 182 (252)
T ss_dssp GGGCCHHHHHHHHHH----HHHHSSSCEEEEEECEEECSCTT
T ss_pred ccccchhhhhhhhhh----hhhcccccceeecceEEECCCcc
Confidence 122345555555443 34567999999999999999753
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2.3e-16 Score=137.08 Aligned_cols=164 Identities=14% Similarity=0.018 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCccccccccc-CCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~------------~~ 178 (309)
++||+||||||+| +||+++++.|+++|++|++.+++..... ...+.. ..........|+.+. ..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKG-RVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHH-HHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 6799999999998 8999999999999999999998743222 211111 122334455555443 33
Q ss_pred CCCCEEEEcccCCCCCCCc---------CChhHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccccccCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK---------YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETY 246 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~---------~~~~~~~~~Nv~gt~~ll~~a~~~~---~r~v~iSS~~vy~~~~~~~~~E~~ 246 (309)
...|++||+|+........ +++...+.+|+.+...+++.+...- ..++++||....
T Consensus 82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~------------ 149 (258)
T d1qsga_ 82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------ 149 (258)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------
T ss_pred cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc------------
Confidence 4589999999865433321 1345667888888888888876542 368888887643
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCceeCCCC
Q 021681 247 WGNVNPIGERSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (309)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~~---gi~~~ivRp~~V~Gp~~ 294 (309)
.+......|+.+|.+.+.+++.++.+. ||+++.|+||.|..+..
T Consensus 150 ----~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~ 196 (258)
T d1qsga_ 150 ----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAA 196 (258)
T ss_dssp ----SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTG
T ss_pred ----cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccc
Confidence 222334789999999999999999874 79999999999987753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.66 E-value=1.7e-16 Score=140.10 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=111.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---cccccCCCceEEEecccccc-----ccCCCCEEEEc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih~ 187 (309)
.++|||||||||||++|+++|+++|++|++++|........ ....+....++++.+|+.+. .+.+++.+|++
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 45799999999999999999999999999999865443211 11122456788999998775 56789999999
Q ss_pred ccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 021681 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 266 (309)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (309)
++.... ..|..++.+++++|.+.+. ++++.||.+++..... .+..+...|...|..+
T Consensus 83 ~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~-----------~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 83 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME-----------HALQPGSITFIDKRKV 140 (312)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC-----------CCCSSTTHHHHHHHHH
T ss_pred hhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc-----------cccchhhhhhHHHHHH
Confidence 864221 1455667788889888875 8888888766543221 3344456677777666
Q ss_pred HHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 267 ETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 267 E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
+.. ....+++++++||+.+||+..
T Consensus 141 ~~~----~~~~~~~~~i~r~~~~~g~~~ 164 (312)
T d1qyda_ 141 RRA----IEAASIPYTYVSSNMFAGYFA 164 (312)
T ss_dssp HHH----HHHTTCCBCEEECCEEHHHHT
T ss_pred HHh----hcccccceEEeccceeecCCc
Confidence 654 455789999999999999743
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.63 E-value=3.9e-16 Score=136.78 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccc----ccccCCCceEEEecccccc-----ccCCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL----VHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~----~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vih 186 (309)
.|+|||||||||||++++++|+++|++|++++|......... ........++++.+|+.+. .+.+++.++|
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 578999999999999999999999999999998755432211 1122345678888888776 4568999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT 265 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (309)
+++. .++.++.++++++...+. ++++.|+...+.. +. ....+...|...+..
T Consensus 83 ~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~-------~~-----~~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 83 TVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDVD-------NV-----HAVEPAKSVFEVKAK 135 (307)
T ss_dssp CCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCTT-------SC-----CCCTTHHHHHHHHHH
T ss_pred cccc---------------cccchhhHHHHHHHHhccccceeeeccccccc-------cc-----ccccccccccccccc
Confidence 9853 344556678888888877 6777666543321 11 111222334444444
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCceeCCCC
Q 021681 266 AETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 266 ~E~~v~~~a~~~gi~~~ivRp~~V~Gp~~ 294 (309)
.+. +..+.+++++++||+++||++.
T Consensus 136 ~~~----~~~~~~~~~~i~r~~~v~g~~~ 160 (307)
T d1qyca_ 136 VRR----AIEAEGIPYTYVSSNCFAGYFL 160 (307)
T ss_dssp HHH----HHHHHTCCBEEEECCEEHHHHT
T ss_pred ccc----hhhccCCCceecccceecCCCc
Confidence 444 4455789999999999999854
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=6.6e-16 Score=132.43 Aligned_cols=151 Identities=21% Similarity=0.172 Sum_probs=109.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----------ccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----------ILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----------~~~~~D~V 184 (309)
.|++|||||+++||++++++|+++|++|++++++.... ......+|+.+. .....+.+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 69 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFAV 69 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc-----------cceEeeccccchhhhHHHHHhhhccccccch
Confidence 47999999999999999999999999999999864322 233445555443 12334556
Q ss_pred EEcccCCCCCC--------CcCChhHHHHHHHHHHHHHHHHHHHc----------C-CcEEEEeccccccCCCCCCCCCC
Q 021681 185 YHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRV----------G-AKFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 185 ih~A~~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~----------~-~r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
+++++...... ..+.++..+++|+.+...+++.+... + .++|++||...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---------- 139 (241)
T d1uaya_ 70 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE---------- 139 (241)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH----------
T ss_pred hhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc----------
Confidence 66655322211 11245678999999999888876432 2 2799999987652
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
+......|+.+|++.+.+++.++.+ +||+++.|.||.|..|.
T Consensus 140 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~ 184 (241)
T d1uaya_ 140 ------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL 184 (241)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHH
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccc
Confidence 2333468999999999999999976 48999999999997653
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.59 E-value=5e-15 Score=129.57 Aligned_cols=164 Identities=10% Similarity=-0.049 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCcccccccc-cCCCceEEEecccccc------------cc
Q 021681 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (309)
Q Consensus 114 ~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~-~~~~~v~~~~~Dl~~~------------~~ 178 (309)
++||++|||||+| +||.+++++|+++|++|++++|+.... +...+. .......+...|++++ .+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~-~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE-KRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 81 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH-HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence 5799999999887 899999999999999999999874321 111111 1123445567777655 34
Q ss_pred CCCCEEEEcccCCCCCCCc-----CChhHHHH---HHHHHHHHHHHHHHHcCC---cEEEEeccccccCCCCCCCCCCCC
Q 021681 179 LEVDQIYHLACPASPVHYK-----YNPVKTIK---TNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETYW 247 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~-----~~~~~~~~---~Nv~gt~~ll~~a~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~ 247 (309)
..+|++|||++........ ..+..... ++..+...+.....+... .++.+|+.....
T Consensus 82 g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------------ 149 (274)
T d2pd4a1 82 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 149 (274)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc------------
Confidence 5799999999865433221 12222222 222333444444433322 355555555442
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCCC
Q 021681 248 GNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM 294 (309)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~~ 294 (309)
+......|+.+|.+.+.+++.++.+ +||+++.+.||.+..+..
T Consensus 150 ----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~ 195 (274)
T d2pd4a1 150 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS 195 (274)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred ----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccc
Confidence 2233467999999999999998876 489999999999987643
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.57 E-value=1.3e-14 Score=131.05 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
+.|+|+|||||||||++|+++|+++|++|+++.|+..+... ........++++.+|+.+. ++.++|.++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence 45799999999999999999999999999999987554322 1112345789999998774 567889998876
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE 267 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (309)
.... ..|+..+.+++++|++.++ ++++.||...... ....+...|..+|...+
T Consensus 80 ~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~--------------~~~~~~~~~~~~k~~~~ 133 (350)
T d1xgka_ 80 TSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL--------------YGPWPAVPMWAPKFTVE 133 (350)
T ss_dssp CSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG--------------TSSCCCCTTTHHHHHHH
T ss_pred cccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc--------------CCcccchhhhhhHHHHH
Confidence 3211 1467788999999999997 8888888654422 11122345667787777
Q ss_pred HHHHHHHHhcCCcEEEEEeCceeCC
Q 021681 268 TLTMDYHRGAGVEVRIARIFNTYGP 292 (309)
Q Consensus 268 ~~v~~~a~~~gi~~~ivRp~~V~Gp 292 (309)
..+. ..++++.++|++..+++
T Consensus 134 ~~~~----~~~~~~~~vr~~~~~~~ 154 (350)
T d1xgka_ 134 NYVR----QLGLPSTFVYAGIYNNN 154 (350)
T ss_dssp HHHH----TSSSCEEEEEECEEGGG
T ss_pred HHHH----hhccCceeeeeceeecc
Confidence 6544 46799999999988764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.57 E-value=1.9e-14 Score=126.17 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=107.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccccc---CCCceEE-----------------Eecccccc-
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFEL-----------------IRHDVVEP- 176 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~---~~~~v~~-----------------~~~Dl~~~- 176 (309)
.++||||+++||++++++|+++|++|++.++......+.+...+ ....... ..+|++++
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~~ 83 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT 83 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCHH
Confidence 78999999999999999999999999998875433222211110 1112222 33445433
Q ss_pred -----------ccCCCCEEEEcccCCCCCCCcC----C--------------hhHHHHHHHHHHHHHHHHHHHc------
Q 021681 177 -----------ILLEVDQIYHLACPASPVHYKY----N--------------PVKTIKTNVMGTLNMLGLAKRV------ 221 (309)
Q Consensus 177 -----------~~~~~D~Vih~A~~~~~~~~~~----~--------------~~~~~~~Nv~gt~~ll~~a~~~------ 221 (309)
.+..+|++|||||......+.+ + +...+.+|+.++..+.+++.+.
T Consensus 84 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 163 (284)
T d1e7wa_ 84 RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPA 163 (284)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHH
Confidence 2457999999999754433221 1 2246789999999998876432
Q ss_pred ---CC--cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCce
Q 021681 222 ---GA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT 289 (309)
Q Consensus 222 ---~~--r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V 289 (309)
+. ++++++|.... .+......|+.+|.+.+.+++.++.+ +||+++.|.||.+
T Consensus 164 ~~~~~~~~ii~~~s~~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t 223 (284)
T d1e7wa_ 164 KHRGTNYSIINMVDAMTN----------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 223 (284)
T ss_dssp GGSCSCEEEEEECCTTTT----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HhcCCCCccccccccccc----------------CCccceeeeccccccchhhhHHHHHHhCCccccccccccccc
Confidence 12 57777776543 23334578999999999999999876 4899999999974
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.56 E-value=2.8e-14 Score=123.85 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=108.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccc---cCCCceEEEecccccc----------------cc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEP----------------IL 178 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~----------------~~ 178 (309)
++|||||+++||++++++|+++|++|++.+++.+...+.+.+. ...........|..+. .+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998765443322211 1223444444433221 34
Q ss_pred CCCCEEEEcccCCCCCCCcC---------------ChhHHHHHHHHHHHHHHHHHHHcC---------C-cEEEEecccc
Q 021681 179 LEVDQIYHLACPASPVHYKY---------------NPVKTIKTNVMGTLNMLGLAKRVG---------A-KFLLTSTSEV 233 (309)
Q Consensus 179 ~~~D~Vih~A~~~~~~~~~~---------------~~~~~~~~Nv~gt~~ll~~a~~~~---------~-r~v~iSS~~v 233 (309)
..+|++|||||...+..... .+...+..|..+...........- . .++.+++...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (266)
T d1mxha_ 83 GRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 162 (266)
T ss_dssp SCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGG
T ss_pred CCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccc
Confidence 57999999999754432211 123445666666666655543321 1 4556666554
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 234 YGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 234 y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
. .+......|+.||++.+.+++.++.+ +||+++.|.||.+..|.
T Consensus 163 ~----------------~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~ 209 (266)
T d1mxha_ 163 D----------------LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP 209 (266)
T ss_dssp G----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS
T ss_pred c----------------ccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc
Confidence 3 23334578999999999999999876 48999999999998764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.56 E-value=1.5e-14 Score=125.91 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=113.3
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc---------------
Q 021681 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------------- 176 (309)
Q Consensus 114 ~~~k~VlITGat--G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------------- 176 (309)
++||++|||||+ .+||.+++++|+++|++|++.+++.....+.+.+.. ......+.+|+.++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~~ 82 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 82 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhccc
Confidence 578999999965 469999999999999999999886554433333332 23455678888765
Q ss_pred ccCCCCEEEEcccCCCCCCC------c---CChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEeccccccCCCCCCCCCC
Q 021681 177 ILLEVDQIYHLACPASPVHY------K---YNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKET 245 (309)
Q Consensus 177 ~~~~~D~Vih~A~~~~~~~~------~---~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iSS~~vy~~~~~~~~~E~ 245 (309)
.+..+|+++||||+...... + ..+...+.+|+.......+.+..... .+++++|....
T Consensus 83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~----------- 151 (268)
T d2h7ma1 83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS----------- 151 (268)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-----------
T ss_pred cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccc-----------
Confidence 12448999999986432211 1 13455677777777777776655432 34444444332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCC
Q 021681 246 YWGNVNPIGERSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (309)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp 292 (309)
........|+.+|.+.+.+++.++.+ +||+++.|.||.|-.+
T Consensus 152 -----~~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~ 196 (268)
T d2h7ma1 152 -----RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 196 (268)
T ss_dssp -----SCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred -----ccCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCCh
Confidence 12223468999999999999999877 4899999999998654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.55 E-value=9.3e-14 Score=122.59 Aligned_cols=168 Identities=12% Similarity=-0.012 Sum_probs=111.7
Q ss_pred cCCCCCeEEEEcCCc--hhHHHHHHHHHHCCCeEEEEecCCCCc------------ccccccccCC---CceEEEecccc
Q 021681 112 IGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGR------------KDNLVHHFRN---PRFELIRHDVV 174 (309)
Q Consensus 112 ~~~~~k~VlITGatG--~IG~~l~~~Ll~~g~~V~~i~r~~~~~------------~~~~~~~~~~---~~v~~~~~Dl~ 174 (309)
++++||++|||||+| +||.+++++|+++|++|++.++..... .......... ..+..+..++.
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 467999999999987 899999999999999999988742110 0000000000 11222221111
Q ss_pred ------------------------------ccccCCCCEEEEcccCCCCC--CC----cCChhHHHHHHHHHHHHHHHHH
Q 021681 175 ------------------------------EPILLEVDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLA 218 (309)
Q Consensus 175 ------------------------------~~~~~~~D~Vih~A~~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a 218 (309)
...+..+|++|||||..... .+ .+++...+++|+.++..+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 01235799999999864321 12 2247889999999999999988
Q ss_pred HHcCC---cEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeC
Q 021681 219 KRVGA---KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (309)
Q Consensus 219 ~~~~~---r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~G 291 (309)
..... ..+.+++...... .......|+.+|.+.+.+++.++.+ +||+++.|.||.+..
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 164 LPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHhhcCCcceeeeehhhccc---------------ccccccceecccccccccccccchhccccceEEecccccccccc
Confidence 76532 4556665443211 1223357999999999988776544 589999999999988
Q ss_pred CCC
Q 021681 292 PRM 294 (309)
Q Consensus 292 p~~ 294 (309)
+..
T Consensus 229 ~~~ 231 (297)
T d1d7oa_ 229 RAA 231 (297)
T ss_dssp CCS
T ss_pred hhh
Confidence 764
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.51 E-value=1.1e-13 Score=124.29 Aligned_cols=161 Identities=8% Similarity=0.027 Sum_probs=110.0
Q ss_pred CCeEEEEc--CCchhHHHHHHHHHHCCCeEEEEecCCCCcc-----------cc-ccccc-CCCceEEEecc--------
Q 021681 116 RLRIVVTG--GAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-----------DN-LVHHF-RNPRFELIRHD-------- 172 (309)
Q Consensus 116 ~k~VlITG--atG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-----------~~-~~~~~-~~~~v~~~~~D-------- 172 (309)
+|.+|||| ++.+||.+++++|+++|++|++.++...... .. ..... ..........|
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 57999999 5579999999999999999999876432110 00 00000 00111222222
Q ss_pred ------------cccc------------ccCCCCEEEEcccCCCCCC--C----cCChhHHHHHHHHHHHHHHHHHHHc-
Q 021681 173 ------------VVEP------------ILLEVDQIYHLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAKRV- 221 (309)
Q Consensus 173 ------------l~~~------------~~~~~D~Vih~A~~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~~~- 221 (309)
+.+. .+.++|++|||||...... + .++|..++++|+.++..+++.+.+.
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 2111 3457999999998654322 1 2357889999999999999998764
Q ss_pred --CCcEEEEeccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCcEEEEEeCceeC
Q 021681 222 --GAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (309)
Q Consensus 222 --~~r~v~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~a~~----~gi~~~ivRp~~V~G 291 (309)
+.++|.+||...... .....+.|+.+|.+.+.+++.++.+ +||+++.|.||.|-.
T Consensus 162 ~~~GsIv~iss~~~~~~---------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKV---------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred ccccccccceeehhccc---------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 237999988765421 1112357999999999999998865 489999999998854
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.44 E-value=3.8e-13 Score=116.04 Aligned_cols=172 Identities=15% Similarity=0.052 Sum_probs=102.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~ 195 (309)
||+|+||||+++||++++++|+++|++|++++++.......+... ........|........+|+++|||+...
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~id~lv~~Ag~~~--- 74 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTA---EGRKQAIADVLAKCSKGMDGLVLCAGLGP--- 74 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSH---HHHHHHHHHHHTTCTTCCSEEEECCCCCT---
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCH---HHHHHHHHHHHHHhCCCCcEEEEcCCCCC---
Confidence 688999999999999999999999999999998543221111100 00000111223334456999999997533
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHH----cCC-cEEEEecccccc-CCCCCCCCCC-----------CCCCCCCCCCCCH
Q 021681 196 YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG-DPLEHPQKET-----------YWGNVNPIGERSC 258 (309)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-r~v~iSS~~vy~-~~~~~~~~E~-----------~~~~~~~~~~~~~ 258 (309)
....+.....+|..+...+.+.... ... ....+++..... .....+.... .............
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~ 154 (257)
T d1fjha_ 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchHH
Confidence 2345677788899988887776533 222 355555432211 1000000000 0000001111235
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCcEEEEEeCceeCCC
Q 021681 259 YDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (309)
Q Consensus 259 Y~~sK~~~E~~v~~~a~~---~gi~~~ivRp~~V~Gp~ 293 (309)
|+.+|.+.+.+++.++.+ +||+++.|.||.|-.|.
T Consensus 155 Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~ 192 (257)
T d1fjha_ 155 YAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL 192 (257)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----
T ss_pred HHHHhhhhhccccccccccccccccccccccCCcCChh
Confidence 999999999999999876 48999999999997764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.19 E-value=8.5e-13 Score=109.28 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=66.3
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc-----ccCCCCEEE
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIY 185 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~-----~~~~~D~Vi 185 (309)
+.++++|+|+||||+|+||+++++.|+++|++|++++|+.++..+..........+.....|+.+. .+.++|+||
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence 346789999999999999999999999999999999997554332222211112333444555443 678899999
Q ss_pred EcccCCCCCCCcCChhHHHHHHHHHH
Q 021681 186 HLACPASPVHYKYNPVKTIKTNVMGT 211 (309)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~Nv~gt 211 (309)
||||........++++..+++|+.+.
T Consensus 98 n~Ag~g~~~~~~e~~~~~~~~nv~~~ 123 (191)
T d1luaa1 98 TAGAIGLELLPQAAWQNESSIEIVAD 123 (191)
T ss_dssp ECCCTTCCCBCHHHHHTCTTCCEEEE
T ss_pred ecCccccccCCHHHHHhhhcceeehh
Confidence 99985332222233444444444333
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.19 E-value=8.5e-06 Score=63.10 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=74.2
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCC---CceE-EEeccccccccCCCCEEEEcccCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN---PRFE-LIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~---~~v~-~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+|.|+||+|.+|+.++..|..++. +++++|.... +....+.... .... .+..+-..+.++++|+||..||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 789999999999999999998875 7888886432 1111111111 1111 233333345688999999999843
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.....+....++.|+.....+++.+++++. -++.+-|
T Consensus 80 --~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 80 --RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp --CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 333346677889999999999999999875 3444443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.14 E-value=2.6e-05 Score=60.33 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=74.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCc--c---cccccc--cCCCceEE-EeccccccccCCCCEEEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGR--K---DNLVHH--FRNPRFEL-IRHDVVEPILLEVDQIYH 186 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~--~---~~~~~~--~~~~~v~~-~~~Dl~~~~~~~~D~Vih 186 (309)
|+|.|+||+|.+|+.++..|+.++ .++.++++..... + ..+.+. ......+. +..+-..+.++++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 589999999999999999999988 4888888753211 1 111111 11122332 222223457889999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~i 228 (309)
+||. +.....+....++.|..-...+++...+.+...|++
T Consensus 81 tAG~--~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iiv 120 (145)
T d1hyea1 81 TSGV--PRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFV 120 (145)
T ss_dssp CCSC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred eccc--ccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEE
Confidence 9984 333344667789999999999999998886543333
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=1.7e-05 Score=61.37 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=72.9
Q ss_pred CeEEEEcCCchhHHHHHHHHH-HCC--CeEEEEecCCCCcccccccc---cCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLI-DRG--DEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll-~~g--~~V~~i~r~~~~~~~~~~~~---~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|+|++|.+|+.++..|. +.+ .++.++|... .......+. ........+..+-..+.+++.|+||.+||.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 689999999999999998875 434 5888888642 222211111 111222223222233467899999999984
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
. .....+-...++.|..-...+.+.+.+.+. .++.+|
T Consensus 80 ~--~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 80 R--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp C--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred c--CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 3 333456677889999999999999998875 344444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.11 E-value=7.6e-06 Score=63.52 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccc----cCCCceEEEeccccccccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+.|+|.|.|+ |.+|..++..|+.+| .+|+++|++....+....+. ...........|. +.+.++|+||.+|
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvita 80 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVITA 80 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEEec
Confidence 3568999995 999999999999987 48999997644322211111 1122233444453 4578999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
|... ....+....+..|+.-...+++.+.+.+. -++.+-|
T Consensus 81 g~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 81 GAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 8433 22344566678999999999999998875 3544444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.08 E-value=1.3e-05 Score=62.26 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih 186 (309)
..+++|.|.|| |.+|+.++..|+..+. +++++|+..........+. +......+...|. +.+.++|+||.
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvi 80 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVI 80 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEE
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEE
Confidence 35678999996 9999999999998874 7888887543322221111 1122333444443 56889999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
+||.. ..........+..|..-...+++.+.+.+. .++.+|
T Consensus 81 tag~~--~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 81 CAGAN--QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCSCC--CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ecccc--cccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 99843 333345567778999999999999988875 344443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.5e-05 Score=61.80 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC----eEEEEecCCCCcccccccccCCCceEEEeccc-cccccCCCCEEEEcccC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD----EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-VEPILLEVDQIYHLACP 190 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~----~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl-~~~~~~~~D~Vih~A~~ 190 (309)
||+|.|.||||++|+.+++.|+++.+ +++.+........ .... ..... ...++ ....+.++|++|.+++-
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~-~~~~--~~~~~--~~~~~~~~~~~~~~DivF~a~~~ 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQA-APSF--GGTTG--TLQDAFDLEALKALDIIVTCQGG 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB-CCGG--GTCCC--BCEETTCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccc-cccc--cCCce--eeecccchhhhhcCcEEEEecCc
Confidence 57899999999999999999988742 5665554322111 1111 11111 11122 22357889999999841
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
.-...+...+.+.|.+.+.++.++.|
T Consensus 76 ------------------~~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 76 ------------------DYTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp ------------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred ------------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence 11345566777788776667766665
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.92 E-value=4.3e-05 Score=60.95 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=71.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC---C----eEEEEecCCCCcc-cc-cccc--cCCCce-EEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG---D----EVIVIDNFFTGRK-DN-LVHH--FRNPRF-ELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g---~----~V~~i~r~~~~~~-~~-~~~~--~~~~~v-~~~~~Dl~~~~~~~~D~V 184 (309)
.+|.||||+|.||+.++..|++.. . ++.+++....... +. ..+. .....+ ..+..+-..+.+.++|+|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV 104 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA 104 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence 489999999999999999998742 1 3344443221110 11 1111 111122 333445556678999999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC---cEEEEe
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTS 229 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---r~v~iS 229 (309)
|-.||. +..........+..|..-...+.+++.+... +++.+|
T Consensus 105 vi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 105 LLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp EECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 999984 4445567788899999999999999998632 444554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.89 E-value=0.00011 Score=56.47 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=73.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|+|| |.+|+.++..|+..+ .+++++|.+.........+. .......+...+. .+.+.++|+|+-+||
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 57999996 999999999999987 48999887654332221111 0112333332222 346789999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEe
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTS 229 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iS 229 (309)
... ....+....++.|..-...+++.+.+.+. -++.+-
T Consensus 79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivv 117 (142)
T d1guza1 79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 533 33345667788999999999999988775 344443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.89 E-value=5.9e-05 Score=58.84 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEEc
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYHL 187 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih~ 187 (309)
.+.++|.|.|+ |.+|+.++..|...+. +++++|.+....+....+. ...........+..++.+.++|+|+-+
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvit 83 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT 83 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEe
Confidence 34578999997 9999999988888774 8888886554332222111 011222233333345677899999999
Q ss_pred ccCCCCCCC---cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 188 ACPASPVHY---KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 188 A~~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
||....... ...-...+..|+.-...+++.+.+.+. -++.+-|
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 985433321 124566788999999999999999876 3444444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.87 E-value=0.0001 Score=56.58 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=68.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccccccc---C-CCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF---R-NPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~---~-~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|.|.|+ |.+|+.++..|+.++. +++++|+.....+....+.. . ......... ..+.+.++|+|+-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--DYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--cHHHhCCCceEEEeccc
Confidence 47888896 9999999999999875 89999977654433322211 1 122333322 34578899999999984
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (309)
. .....+....+..|+.-...+++.+.+.+.
T Consensus 79 ~--~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p 109 (142)
T d1y6ja1 79 N--RKPGETRLDLAKKNVMIAKEVTQNIMKYYN 109 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred c--cCcCcchhHHhhHHHHHHHHHHHHhhccCC
Confidence 3 223456677889999999999999998865
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.86 E-value=5.7e-05 Score=58.05 Aligned_cols=108 Identities=15% Similarity=0.011 Sum_probs=73.4
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCC--cccccccc----cCCCceEEEeccccccccCCCCEEEEccc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTG--RKDNLVHH----FRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~--~~~~~~~~----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
+|.|+||+|.+|+.++..|+.++. +++++|..... ......+. .......+...| .+.+.++|+|+-.||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~--~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC--HHHhhhcCEEEEecc
Confidence 789999999999999999999875 78877753221 11111111 012333444443 345789999999998
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.. .....+....++.|..-...+++.+.+.+. .++.+|
T Consensus 80 ~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 80 IP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp CC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred cc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 43 233356778899999999999999998875 344443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.80 E-value=0.00011 Score=57.57 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih 186 (309)
...++|-|.|+ |.+|+.++..|+.+|. +++++|.+.........+. +..........| .+.+.++|+|+.
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVi 94 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVV 94 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEE
Confidence 34468999996 9999999999999985 7888887543332222111 111222222233 346889999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.||... ....+....++.|+.-...+++.+++.+. -++.+|
T Consensus 95 tAg~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 95 TAGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp CCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred ecCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 998533 33345667788999999999999998875 344444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=9.2e-05 Score=56.73 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=73.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc---c-CCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH---F-RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~---~-~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.|.|+ |.+|+.++..|+.++. +++++|.+.........+. . -.........| .+.++++|+|+-+||.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 58899996 9999999999988874 8888887543322221111 0 01233344433 3468899999999984
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.. .........+..|..-...+++.+.+.+. -++++-|
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 33 23345667788999999999999998875 3444433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.76 E-value=6.8e-05 Score=55.17 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 109 p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|...+.++|+|+|.| +|-+|..-++.|++.|.+|++++..... ..........+.+...+..+..+.+++.|+.+.
T Consensus 5 Pi~l~l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~---~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at 80 (113)
T d1pjqa1 5 PIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIP---QFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (113)
T ss_dssp EEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCH---HHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred ceEEEeCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCCh---HHHHHHhcCCceeeccCCCHHHhCCCcEEeecC
Confidence 556678999999999 5899999999999999999998754322 222223446778888888888889999999776
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.75 E-value=5.9e-05 Score=57.04 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=50.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc------cCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~------~~~~D~Vih~A 188 (309)
|+|+|.|+ |.+|+.+++.|.+.|++|++++.+...... +.+. ....++.+|.+++. +.++|.++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~-~~~~---~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKK-ASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhh-hhhh---hhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 68999997 999999999999999999999975432221 1111 24567888888772 45688888765
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.73 E-value=9.2e-05 Score=56.87 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=73.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc-----cCCCceEEEe-ccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH-----FRNPRFELIR-HDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~-~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.|+ |.+|..++..|+.+|. +++++|.+.........+. .-.....+.. .| .+.++++|+||-.|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d--~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC--HHHhccccEEEEec
Confidence 68899996 9999999999998774 7888886543322221111 0111222332 23 35789999999999
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
|.. .....+....+..|..-...+++.+++.+. -++++-|
T Consensus 78 g~~--~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 78 GLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred ccc--CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 843 333456677888999999999999998875 3444444
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.70 E-value=0.00013 Score=56.16 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
.|+|.|.||||++|+.|++.|.++++ ++..+..... ..+.+. ...-++...++....+.++|++|.+++.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~-~Gk~i~----~~~~~~~~~~~~~~~~~~~d~vf~a~p~-- 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-AGQRMG----FAESSLRVGDVDSFDFSSVGLAFFAAAA-- 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-TTCEEE----ETTEEEECEEGGGCCGGGCSEEEECSCH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc-CCccee----eccccchhccchhhhhccceEEEecCCc--
Confidence 36899999999999999999986654 5655542211 111111 1122334445555667889999988731
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
.....+...+.+.|.++|=.|+..-
T Consensus 75 ----------------~~s~~~~~~~~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 75 ----------------EVSRAHAERARAAGCSVIDLSGALE 99 (144)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEETTCTTT
T ss_pred ----------------chhhhhccccccCCceEEeechhhc
Confidence 1133445556667777777777653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00013 Score=51.60 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++++|+|+|.|. |-.|.++++.|.+.|++|++.|.......... +. ....+...+..+..+.++|.||-.-|+
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~d~vi~SPGi 74 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDK---LP-EAVERHTGSLNDEWLMAADLIVASPGI 74 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGG---SC-TTSCEEESBCCHHHHHHCSEEEECTTS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHH---Hh-hccceeecccchhhhccCCEEEECCCC
Confidence 478899999996 78899999999999999999997544222111 11 122233334444556789999998874
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.68 E-value=0.00017 Score=55.39 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=73.7
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCccccccccc----CCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~----~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+|.|.|+ |.+|+.++..|+.++. +++++|......+....+.. ......+...+.. +.+.++|+||-+||..
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 6889996 9999999999998875 88888876433322211110 0122333333333 3578899999999843
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.....+....+..|..-...+++.+.+.+. -++.+-|
T Consensus 81 --~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 81 --QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred --cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 333456677889999999999999998875 3444433
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.65 E-value=6.4e-05 Score=58.89 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEE
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYH 186 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih 186 (309)
.+..+|.|.|+ |.+|..++..|+..|. +++++|.+.........+. +..........| ...+.++|+||.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvi 93 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVII 93 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc--hhhhccccEEEE
Confidence 34458999995 9999999999999875 7888886543322221111 111122222333 345688999999
Q ss_pred cccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
.||..... ..+....++.|+.-...+++.+.+.+. .++.+|
T Consensus 94 tag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 94 TAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp CCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred ecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 99853332 334445677899999999998888765 344444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=5.7e-05 Score=58.97 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=46.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEE-EeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFEL-IRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~-~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.|+ |.+|+.++..|.+.|++|.+++|.................... +..+ ..+....+|+||.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN-DPDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEES-CHHHHHTCSEEEECS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccc-hhhhhcccceEEEee
Confidence 78999997 9999999999999999999999876543322111111111211 1122 223456799999886
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.64 E-value=7.6e-05 Score=58.14 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=66.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC----eEEEEec-CCCCcccccc----c--ccCCCce-EEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD----EVIVIDN-FFTGRKDNLV----H--HFRNPRF-ELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~----~V~~i~r-~~~~~~~~~~----~--~~~~~~v-~~~~~Dl~~~~~~~~D~V 184 (309)
++|.|+||+|++|+.++..|+..+. ..+.+.. ......+... + ....... .....+-..+.++++|+|
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV 84 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA 84 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence 5899999999999999999987653 1122111 1111111111 0 1111222 233334445678999999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcC
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~ 222 (309)
|-+||.. .....+....+..|+.-...+.+.+.+..
T Consensus 85 iitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a 120 (154)
T d1y7ta1 85 LLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVA 120 (154)
T ss_dssp EECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999853 33445677888999999999999998863
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.61 E-value=4.5e-05 Score=58.69 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=67.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccccccc-----CCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~-----~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|.|.|+ |.+|..++..|+.++- +++++|...........+.. ......+...+- .+.+.+.|+||-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~advvvitag~ 79 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSDVIVVTSGA 79 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCCEEEEeeec
Confidence 58999996 9999999999988764 88888875543332222211 111222222221 2346889999999984
Q ss_pred CCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
.. ....+....++.|..-...+++...+.+. -++.+.|
T Consensus 80 ~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 80 PR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred cC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 33 23344556678999999999999988775 3444433
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.53 E-value=0.0005 Score=54.64 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=59.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC-CCC-cccccc----cccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF-FTG-RKDNLV----HHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~-~~~-~~~~~~----~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|++|.|.||||+.|..|++.|.++.+ ++..+... ... ..+... .............+..+....++|++|.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 57999999999999999999999854 66554322 111 111111 111112223333344444567899999987
Q ss_pred cCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc
Q 021681 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (309)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~v 233 (309)
.. . ....+...+.+.+.++|=.|+..-
T Consensus 81 p~----------~--------~s~~~~~~~~~~~~~vIDlSadfR 107 (179)
T d2g17a1 81 AH----------E--------VSHDLAPQFLQAGCVVFDLSGAFR 107 (179)
T ss_dssp CH----------H--------HHHHHHHHHHHTTCEEEECSSTTS
T ss_pred cc----------h--------hHHHHhhhhhhcCceeeccccccc
Confidence 31 1 122344555666778888887654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.52 E-value=0.00014 Score=56.55 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=64.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-------eEEEEecCCCCcc-cccc-c--ccCCCce-EEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGRK-DNLV-H--HFRNPRF-ELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-------~V~~i~r~~~~~~-~~~~-~--~~~~~~v-~~~~~Dl~~~~~~~~D~V 184 (309)
++|.|+||+|.+|++++..|+..+- +++.++....... +.+. + ....... .....+-..+.+.++|+|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV 83 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence 5899999999999999999886431 2344443211111 1110 0 0111222 233334445678999999
Q ss_pred EEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHc
Q 021681 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (309)
|-+||... ....+....++.|..-...+.+.+.+.
T Consensus 84 Vitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 84 ILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp EECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 99998433 333445566789999999999998775
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.49 E-value=5.1e-05 Score=60.29 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
|+|.|+||+|.+|++|++.|++.|++|++.+|+..+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~ 36 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK 36 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 689999999999999999999999999999987543
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00024 Score=58.74 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=50.3
Q ss_pred CCCCCeEEEEcC----------------CchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccc--
Q 021681 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-- 174 (309)
Q Consensus 113 ~~~~k~VlITGa----------------tG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~-- 174 (309)
+++||+||||+| ||.+|.+|++.+.++|++|+++.-...... ...+..+...-.
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~--------p~~~~~~~~~t~~~ 74 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT--------PPFVKRVDVMTALE 74 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC--------CTTEEEEECCSHHH
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc--------ccccccceehhhHH
Confidence 467888888875 799999999999999999999875332111 123444443222
Q ss_pred -----ccccCCCCEEEEcccCC
Q 021681 175 -----EPILLEVDQIYHLACPA 191 (309)
Q Consensus 175 -----~~~~~~~D~Vih~A~~~ 191 (309)
...+.++|++|++|++.
T Consensus 75 m~~~~~~~~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 75 MEAAVNASVQQQNIFIGCAAVA 96 (223)
T ss_dssp HHHHHHHHGGGCSEEEECCBCC
T ss_pred HHHHHHhhhccceeEeeeechh
Confidence 22456899999999864
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.47 E-value=0.00035 Score=53.76 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=70.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
|+|.|+|+ |.+|+.++..|+.+| .+++++|.+....+....+. ...........| .+.++++|+||-+||
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d--~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND--WAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC--HHHhccccEEEEecc
Confidence 68999995 999999999999877 37888887544322221111 111223333333 345789999999998
Q ss_pred CCCCCCC--cCChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 190 PASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
....... ..+-...++.|..-...+++.+++.+. -++.+-|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5322111 112334577899999999999998875 3444444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.46 E-value=8.3e-05 Score=58.49 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=46.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccc-----cccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl-----~~~~~~~~D~Vih~A 188 (309)
.|+|+|.|| |++|+.+++.|.++|++|++++|+....... ...+ ........+. .+..+...|.++.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l-~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKL-SAGV--QHSTPISLDVNDDAALDAEVAKHDLVISLI 75 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHH-HTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHH-Hhcc--cccccccccccchhhhHhhhhccceeEeec
Confidence 589999986 9999999999999999999999875533322 2221 2222222222 222456678888665
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.37 E-value=0.00065 Score=52.18 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=53.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC-C---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG-D---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g-~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
|+|.|.||||++|+.|++.|+++. + ++..+..... ..+.... ..... .+........+.++|+||.+...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~--~gk~~~~-~~~~~-~~~~~~~~~~~~~~DvvF~alp~-- 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--GVPAPNF-GKDAG-MLHDAFDIESLKQLDAVITCQGG-- 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC--SSBCCCS-SSCCC-BCEETTCHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc--ccccccc-CCcce-eeecccchhhhccccEEEEecCc--
Confidence 689999999999999999998754 2 4554443211 1111111 11111 11111122346889999999831
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
. -+..+...+.+.|.+.+.++-++.|
T Consensus 75 ---------~-------~s~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 75 ---------S-------YTEKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp ---------H-------HHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred ---------h-------HHHHHhHHHHHcCCceEEEeCCccc
Confidence 0 1335666677777764444433333
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.36 E-value=0.0015 Score=50.18 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=72.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccc-----cCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~-----~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++|-|.|+ |.+|+.++..|+.++- +++++|.+....+....+. +......+...+ ..+.+++.|+|+-+||.
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag~ 81 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEeccc
Confidence 48999995 9999999988877764 8888887554333222111 111222222222 33567889999999985
Q ss_pred CCCCCCc---CChhHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 191 ASPVHYK---YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 191 ~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
...+... .+....+..|..-...+++.+++.+. -++++-|
T Consensus 82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4433322 23556688999999999999998875 3444433
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0009 Score=50.14 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=52.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~ 196 (309)
|+|.|.|++|-+|+.+.+.+.++++++++.... + ..+.+.++|+||.+.-
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~----------------------~-~~~~~~~~DVvIDFS~------- 50 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV----------------------N-GVEELDSPDVVIDFSS------- 50 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET----------------------T-EEEECSCCSEEEECSC-------
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC----------------------C-cHHHhccCCEEEEecC-------
Confidence 589999999999999999888888887654210 0 1123467899998762
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+ .++..+++.|.++++.+|.=+|.
T Consensus 51 ---p--------~~~~~~l~~~~~~~~p~ViGTTG 74 (128)
T d1vm6a3 51 ---P--------EALPKTVDLCKKYRAGLVLGTTA 74 (128)
T ss_dssp ---G--------GGHHHHHHHHHHHTCEEEECCCS
T ss_pred ---H--------HHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 23557888898888876655553
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.07 E-value=0.0002 Score=56.00 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+++++|||.|+ |-+|..+++.|...|. ++++..|...+.. .+...+ .......+-....+.++|+||.+.+
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~-~l~~~~---~~~~~~~~~~~~~l~~~Divi~ats 93 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV-ELARDL---GGEAVRFDELVDHLARSDVVVSATA 93 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH-HHHHHH---TCEECCGGGHHHHHHTCSEEEECCS
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHH-HHHHhh---hcccccchhHHHHhccCCEEEEecC
Confidence 357789999997 9999999999999997 6777776533222 222221 2334445555567789999999986
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.06 E-value=0.0027 Score=48.88 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=56.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC---eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~---~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
=+|.|.||||++|.+|++.|.++.+ ++..+... +....... ...-.....+..+..+.++|+++.+++.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~~----~~~~~~~~~~~~~~~~~~~d~~f~~~~~--- 73 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLK----FKDQDITIEETTETAFEGVDIALFSAGS--- 73 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEEE----ETTEEEEEEECCTTTTTTCSEEEECSCH---
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-cccccccc----ccCCcccccccchhhhhhhhhhhhccCc---
Confidence 3799999999999999998888754 23333211 11111111 1112233344555667789999988741
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccc
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy 234 (309)
..+..+...+.+.+.++|=.|+..-+
T Consensus 74 ---------------~~s~~~~~~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 74 ---------------STSAKYAPYAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp ---------------HHHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred ---------------cchhhHHhhhccccceehhcChhhhc
Confidence 11234445555667788888876644
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=0.00063 Score=51.02 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=47.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
|+++|.|+ |-+|+.+++.|.+.|++|++++.+...... +.......+.+|.+++ .+.++|.||-+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~-----~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA-----YASYATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHH-----TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHH-----HHHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence 56888875 899999999999999999999975433222 1223345667787776 245689888766
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.96 E-value=0.0004 Score=53.45 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+..+++|.|.||.|.+|+.+++.|.+.|++|.+.++..
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 45678999999999999999999999999999998754
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00056 Score=53.81 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
..++|+|+|.|+ |+.+++++..|.+.|.+|+++.|...+..+..........+..+ +..+....++|+|||+..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp 88 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATS 88 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCS
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc--ccccccccccceeecccc
Confidence 357789999995 88899999999999999888887654332222211112233333 333333467899999964
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.0002 Score=56.50 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEe-cccccc--ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR-HDVVEP--ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~-~Dl~~~--~~~~~D~Vih~A~ 189 (309)
++.+|+|+||+|.+|...++.+...|.+|++++++..+.+ ... .+.... +++ .|..+. ...++|+||.+.|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~-~lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPL-ALGAEE--AATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHH-HTTCSE--EEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccc-ccc-ccccce--eeehhhhhhhhhccccccccccccc
Confidence 4569999999999999999988889999999887543222 122 122221 222 122111 3357999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.86 E-value=0.00088 Score=52.77 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=50.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..++|+|+|.|+ |+.+++++..|.+.+.+|+++.|+..+.+......-....+..+..| +..+..+|+||++...
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~ 89 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSA 89 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--cccccccceeeecccc
Confidence 357789999995 78899999999988789999988754333222211112234344433 3346789999999754
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0017 Score=50.68 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC-CeEEEE-ecCCCCc-ccccccccCCCceEEEeccccccccCCCCEEEEcccCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVI-DNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i-~r~~~~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~ 191 (309)
+.++|.|.|++|-+|+.+++.+.+.. .+++.. ++..... .....+............|-.+..+..+|+||.+.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs--- 79 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT--- 79 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec---
Confidence 34689999999999999999998874 355443 3322111 11111111111122222233455677899999875
Q ss_pred CCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
+-.++...++.|.+.++.+|.=+|.
T Consensus 80 ---------------~p~~~~~~~~~a~~~~~~~ViGTTG 104 (162)
T d1diha1 80 ---------------RPEGTLNHLAFCRQHGKGMVIGTTG 104 (162)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ---------------cHHHHHHHHHHHHhccceeEEecCC
Confidence 2234567888999988777765554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.76 E-value=0.0032 Score=48.92 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=44.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
||+|+|.| .|.||..+++.|.+.|+ +|+++|++....+... ....++....+........+|+||.+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH----HhhcchhhhhhhhhhhccccccccccC
Confidence 56899998 69999999999999986 6888887533222111 112233333444444555789888876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00026 Score=55.85 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC-ceEEEeccccccc-----cCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDVVEPI-----LLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~~Dl~~~~-----~~~~D~Vih~A 188 (309)
++.+|||+||+|.+|...++.+...|.+|++++++..+ .+...+ +... .++.-+.|..+.. -.++|+||.+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~-~~~~~~-~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG-QKIVLQ-NGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHH-TTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccc-cccccc-cCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 45699999999999999999888899999999875332 222222 1221 1111122333321 13589999987
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 106 g 106 (174)
T d1yb5a2 106 A 106 (174)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0006 Score=46.31 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
++++|||+||+|.+|...++.+...|.+|+++.++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 355899999999999999998888999999988654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.68 E-value=0.0012 Score=51.31 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=43.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.| .|.+|+.+++.|.+.|++|++.+|+....+..... ..++....+ .+.++++|+||-+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~~~~~~~--~~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVDEAGQD--LSLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCSEEESC--GGGGTTCSEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hccceeeee--cccccccccccccC
Confidence 6789997 59999999999999999999998864322211111 111111112 13567899998665
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.00079 Score=53.32 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=26.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEe
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~ 147 (309)
|++|.|.||||++|..|++.|.++.+ ++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 57999999999999999999988764 555554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.57 E-value=0.00039 Score=55.29 Aligned_cols=73 Identities=15% Similarity=0.010 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCce-EEEecccccc-----ccCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEP-----ILLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v-~~~~~Dl~~~-----~~~~~D~Vih~A 188 (309)
+|.+|||+||+|.+|...++.....|.+|++++++..+. +.... .....+ +..+.|..+. .-.++|+||++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~-~~~~~-~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH-TTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH-HHHHh-hhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 467999999999999999998889999999998753321 11111 122221 1112222222 224699999998
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 107 G 107 (182)
T d1v3va2 107 G 107 (182)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.46 E-value=0.0012 Score=53.38 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=29.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
|+|.|.| .|++|..++..|++.|++|+++|.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 6789996 79999999999999999999999753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.41 E-value=0.0004 Score=54.97 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccc-----cCCCCEEEEcc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPI-----LLEVDQIYHLA 188 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~-----~~~~D~Vih~A 188 (309)
++.+|||+||+|.+|...++.+...|.+|+++++...+ .+.+.+. .... ++..+.|+.+.. -.++|+||.+.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~-~~~l~~~-Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK-REMLSRL-GVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHH-HHHHHTT-CCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccc-ccccccc-cccccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 45699999999999999999888889999998875332 2222221 2221 111122333332 14699999998
Q ss_pred c
Q 021681 189 C 189 (309)
Q Consensus 189 ~ 189 (309)
|
T Consensus 103 g 103 (183)
T d1pqwa_ 103 A 103 (183)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.40 E-value=0.0018 Score=51.48 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=26.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEe
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~ 147 (309)
..+|.|.||||+.|+.|++.|.++.+ ++..+.
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45899999999999999999998754 555443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.38 E-value=0.0015 Score=51.60 Aligned_cols=73 Identities=21% Similarity=0.081 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc----ccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP----ILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~----~~~~~D~Vih~A~ 189 (309)
++.+|||+||+|.+|...++.....|.+|+...++..+.. .... +....+...+.+..+. .-+++|+||.+.|
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~-~~~~-lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD-YLRV-LGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH-HHHH-TTCSEEEECC---------CCSCCEEEEEECST
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH-HHHh-cccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 3558999999999999999888889999999887544322 1111 1222221111111111 1246999999986
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.0023 Score=50.07 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccc-----cCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~-----~~~~D~Vih~A~ 189 (309)
+.+|||+||+|.+|...++.....|++|+.+.++.++.+ .+... ....+ +...|...+. -.++|+||.+.|
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~-~~~~l-Gad~v-i~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD-YLKQL-GASEV-ISREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH-HHHHH-TCSEE-EEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHH-HHHhh-cccce-EeccchhchhhhcccCCCceEEEecCc
Confidence 347999999999999999887788999999987644322 22211 22222 1112222221 135899999875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.00058 Score=53.84 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCC-ceEEEecccccccc-----CCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDVVEPIL-----LEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~-~v~~~~~Dl~~~~~-----~~~D~Vih~A~ 189 (309)
+.+|+|+||+|.+|..+++.....|.+|++++++..+.+. +.+. ... .++.-+.|+.+... .++|+|+.+.+
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~-~~~l-Ga~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g 106 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS-ALKA-GAWQVINYREEDLVERLKEITGGKKVRVVYDSVG 106 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHH-TCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHH-HHhc-CCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence 5699999999999999999888899999999876443321 2211 222 22222233433321 34899999885
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.00 E-value=0.0025 Score=49.38 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=43.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|++|.+.| .|.+|+.+++.|+++|++|.+.+|+......... .. ....+...+.+..+|+|+-+-
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~----~~---~~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----AG---ASAARSARDAVQGADVVISML 65 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH----TT---CEECSSHHHHHTSCSEEEECC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh----hh---ccccchhhhhccccCeeeecc
Confidence 46889997 7999999999999999999999876433221111 01 122233344556677777665
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.00063 Score=54.32 Aligned_cols=73 Identities=19% Similarity=-0.002 Sum_probs=41.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEecccccc----ccCCCCEEEEccc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEP----ILLEVDQIYHLAC 189 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~----~~~~~D~Vih~A~ 189 (309)
.+|||+||+|.+|+..++-....|.++++.......+...+...+.... ++..+.|+.+. .-.++|+||.+.|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 5899999999999999988877898655443322222222222222221 22112222221 1246999999985
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0021 Score=50.09 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCc-eEEEeccccccccCCCCEEEEccc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~-v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.|.+|+|.|+ |.+|...++.+...|.++++++++..+. +... .+.... ++..+.+......+++|++|.+.|
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~-~lGad~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAK-ALGADEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHH-HHTCSEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH-HHHh-ccCCcEEEECchhhHHHHhcCCCceeeeeee
Confidence 3569999986 8899999988888899998888754432 2222 222221 111112222334567999999986
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.94 E-value=0.015 Score=42.48 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.++++|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence 46899988 599999999999999999999997654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.75 E-value=0.0023 Score=49.55 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=44.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|-|.| .|.+|+.+++.|++.|++|++.+++....++... ... ...+-..+.++++|+||-|-
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----~~~--~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----AGA--ETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----TTC--EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----hhh--hhcccHHHHHhCCCeEEEEc
Confidence 5788888 7999999999999999999999875433222111 111 12333445667789888875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.72 E-value=0.0047 Score=48.26 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=30.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
|+|.|.|+ |.+|..++..|.+.|++|++++|+.
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999996 9999999999999999999999864
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.011 Score=46.42 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc--ccccc-CCCceEEEeccccc-----cccCCCCE
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN--LVHHF-RNPRFELIRHDVVE-----PILLEVDQ 183 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~--~~~~~-~~~~v~~~~~Dl~~-----~~~~~~D~ 183 (309)
+.++|+|+|.|+ |+.|++++..|.+.|. .++++.|........ +.+.+ ..........|+.+ ..+..+|+
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence 457789999996 8899999999999987 677878764433211 11110 11112222333322 24567999
Q ss_pred EEEcccC
Q 021681 184 IYHLACP 190 (309)
Q Consensus 184 Vih~A~~ 190 (309)
|||+...
T Consensus 94 iIN~Tp~ 100 (182)
T d1vi2a1 94 LTNGTKV 100 (182)
T ss_dssp EEECSST
T ss_pred eccccCC
Confidence 9999753
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.63 E-value=0.0045 Score=49.12 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
-++|.|.|| |.+|+.++..++..|++|++++++..
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468999996 99999999999999999999998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.60 E-value=0.0031 Score=49.08 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEec----cccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~----Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+.+|+|.|+ |.+|...+..+...|.+|++++++..+.+ ...+ +.... ++.. |..+....++|.++.+.+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~-lGa~~--~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE-DAMK-MGADH--YIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHH-HTCSE--EEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHH-Hhhc-cCCcE--EeeccchHHHHHhhhcccceEEEEecC
Confidence 4569999986 99999998877788999999988654332 2222 12221 2221 2233345568999998763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.03 Score=46.02 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCccccc----------------------ccccCCCceEEEe
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL----------------------VHHFRNPRFELIR 170 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~----------------------~~~~~~~~v~~~~ 170 (309)
.+.++|+|.| .|++|++++..|++.|. +++++|.+.-...+.- .+......++.+.
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 4567999999 58899999999999997 7888875422111110 0111122333333
Q ss_pred cccccc----ccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q 021681 171 HDVVEP----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (309)
Q Consensus 171 ~Dl~~~----~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~ 235 (309)
..+... .+...|+++.+.. |...-..+-+.|.+.+..+|+.+....+|
T Consensus 107 ~~~~~~~~~~~~~~~divid~~d-----------------~~~~~~~in~~~~~~~ip~i~g~~~~~~g 158 (247)
T d1jw9b_ 107 ALLDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKVPLVSGAAIRMEG 158 (247)
T ss_dssp SCCCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEEEBTEE
T ss_pred hhhhhccccccccccceeeeccc-----------------hhhhhhhHHHHHHHhCCCccccccccccc
Confidence 222222 3456888887762 22233355667888888888766554443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.52 E-value=0.02 Score=44.85 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=47.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc-cccccc-----c--cCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVH-----H--FRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~-~~~~~~-----~--~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.| +|-.|.+++..|.+.|++|.+..|..... .+.+.. . .......+...+-.++.+.++|+||.+.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 6899999 59999999999999999999987743211 000100 0 0112223444455666788999999865
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.50 E-value=0.0044 Score=47.34 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|-|.| .|.+|+.+++.|++.|++|++.++............. .+ .+..++.+..+|+||-+-
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~---~~----~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV---GV----TETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH---TC----EECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc---cc----cccHHHHHhhcCeEEEEe
Confidence 5788887 6999999999999999999887764333222111111 11 123455678899999886
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0055 Score=46.69 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=35.1
Q ss_pred CCCccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec
Q 021681 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 108 ~p~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
.|.....++|+|||.|| |.+|..-++.|++.|.+|+++..
T Consensus 5 lpl~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 5 LQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp EEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred chhheeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 45556689999999997 89999999999999999999864
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.39 E-value=0.082 Score=38.92 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCC---chhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 114 RRRLRIVVTGGA---GFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 114 ~~~k~VlITGat---G~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
++-++|.|.||+ +..|..+.+.|.+.| ++|+.+... .+.+.. +. .-.++ ++.-..+|.++-+..
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~----~~~i~G------~~-~y~sl-~dlp~~vDlvvi~vp 73 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK----EEEVQG------VK-AYKSV-KDIPDEIDLAIIVVP 73 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS----CSEETT------EE-CBSST-TSCSSCCSEEEECSC
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC----ccccCC------eE-eecch-hhcCCCCceEEEecC
Confidence 455799999998 999999999987766 588887532 111110 00 00111 112235888887652
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCc-EEEEecc
Q 021681 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231 (309)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r-~v~iSS~ 231 (309)
-..+..+++.|.+.|++ ++.+|+.
T Consensus 74 ------------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 74 ------------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp ------------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred ------------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 22345678888889985 5566554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.014 Score=44.30 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=50.6
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
.|+|.|. |-+|..++++|.+.|.+|++++.+.......... .....+.++.+|.+++ .+.++|.||-+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~-~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ-RLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHH-hhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 5888886 8999999999999999999998654322222211 1234678899998887 345689998776
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.018 Score=53.06 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=66.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcc----------cc------------cccccCCCceEEEecc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------DN------------LVHHFRNPRFELIRHD 172 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~----------~~------------~~~~~~~~~v~~~~~D 172 (309)
..+|+|.|+ |.+|.++++.|+..|. +++++|...-... +. +.+.-....++.+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 358999996 7899999999999996 7888875421110 00 1111122344455544
Q ss_pred ccc------cccCCCCEEEEcccCCCCCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 021681 173 VVE------PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (309)
Q Consensus 173 l~~------~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~~vy~~ 236 (309)
..+ ..+.++|+||.+.. |......+-+.|.+.++.+|...+.+.||.
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~ 156 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVGY 156 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTEEE
T ss_pred chhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeccCCEEE
Confidence 432 34667999997751 233344567888888889999988877763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.20 E-value=0.04 Score=43.20 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=47.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
...+|+|.|.| .|-||+.+++.+..-|.+|++.++....... . ..+-.++.+..+|+|+.+.
T Consensus 39 ~l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~---------~----~~~~l~ell~~sDiv~~~~ 100 (181)
T d1qp8a1 39 LIQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPW---------R----FTNSLEEALREARAAVCAL 100 (181)
T ss_dssp CCTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSS---------C----CBSCSHHHHTTCSEEEECC
T ss_pred cccCceEEEec-cccccccceeeeeccccccccccccccccce---------e----eeechhhhhhccchhhccc
Confidence 36889999999 6889999999999999999999875322111 0 1234567888999999876
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.10 E-value=0.0067 Score=47.56 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccc---cccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~---~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.++|+|+|.|+ |+.+++++..|.+.| +|+++.|+..+.+.... ..........+..+-.+......|++|++...
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence 57789999995 789999999997766 88888886443322111 11111111112222333345678999998643
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.03 E-value=0.04 Score=41.10 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=49.0
Q ss_pred eEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCCCCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~~~~ 196 (309)
+|.|.|++|-+|+.+++.+.+.. .++....... + ++......++|+||.+.-+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~----~----------------~~~~~~~~~~DvvIDFS~p------ 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG----D----------------PLSLLTDGNTEVVIDFTHP------ 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT----C----------------CTHHHHTTTCSEEEECCCT------
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC----C----------------chhhhccccCCEEEEcccH------
Confidence 68999999999999999988764 4665543210 0 1111122568999988632
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 021681 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (309)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS 230 (309)
.++...++.|.+.++.+|.=+|
T Consensus 55 ------------~~~~~~~~~~~~~~~~~ViGTT 76 (135)
T d1yl7a1 55 ------------DVVMGNLEFLIDNGIHAVVGTT 76 (135)
T ss_dssp ------------TTHHHHHHHHHHTTCEEEECCC
T ss_pred ------------HHHHHHHHHHHhcCCCEEEecc
Confidence 1245677888888887765443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.031 Score=43.45 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=50.6
Q ss_pred CccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCccccccc-ccCCCc---eEEEeccccccccCCCCEEE
Q 021681 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH-HFRNPR---FELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 110 ~~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~-~~~~~~---v~~~~~Dl~~~~~~~~D~Vi 185 (309)
.+.+.+||+++|.|-+.-+|+.|+..|+++|..|+.+............. ...... +..+..|...+.....|+||
T Consensus 23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI 102 (171)
T d1edza1 23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 102 (171)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence 35578999999999999999999999999999998876432111000000 000111 11122233444455689999
Q ss_pred EcccC
Q 021681 186 HLACP 190 (309)
Q Consensus 186 h~A~~ 190 (309)
..+|.
T Consensus 103 savG~ 107 (171)
T d1edza1 103 TGVPS 107 (171)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 88864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.98 E-value=0.024 Score=41.41 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
++++|+|.| +|++|.+++..|.+.|.+|+++.+..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 456899998 58999999999999999999998754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.96 E-value=0.017 Score=44.96 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~ 153 (309)
.+|-|.| .|.+|..+++.|++.|++|++.+|...+.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~ 38 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKV 38 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 4788998 69999999999999999999999875543
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.92 E-value=0.028 Score=40.01 Aligned_cols=39 Identities=15% Similarity=0.001 Sum_probs=31.6
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
..+++|+|+|.| +|--|..++..|++.+.+|+.+.+...
T Consensus 28 ~~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 28 ELFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GGGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred hhcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 357899999999 579999999999988877776666433
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.77 E-value=0.018 Score=44.62 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
++++|+|.|+ |+.|++++..|.+.|. +|.++.|+..+.. .+...+. ...+. .....++|+|||+...
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~-~L~~~~~---~~~~~----~~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQ-YLAALYG---YAYIN----SLENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHH-HHHHHHT---CEEES----CCTTCCCSEEEECSST
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHH-HHHHhhh---hhhhh----cccccchhhheecccc
Confidence 4578999995 8999999999999996 7888877543222 2222211 11111 1123568999998643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.018 Score=44.41 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=47.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.+.||+++|.| .|.||+.+++.|...|.+|++.+..+...-+... ..+.+. ..++++...|++|-+.|
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~-----dG~~v~---~~~~a~~~adivvtaTG 88 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAM-----EGYEVT---TMDEACQEGNIFVTTTG 88 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----TTCEEC---CHHHHTTTCSEEEECSS
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhc-----CceEee---ehhhhhhhccEEEecCC
Confidence 36889999999 8999999999999999999999875432222111 112222 23455666788887776
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.011 Score=46.32 Aligned_cols=36 Identities=36% Similarity=0.373 Sum_probs=31.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
.+|||+||+|.+|...++.....|++|+++.+...+
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k 68 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST 68 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence 479999999999999998888899999998875443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.042 Score=42.42 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
...||+|+|.|.+..+|+.|+..|.++|+.|+.+..
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 468999999999999999999999999999988764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.62 E-value=0.011 Score=45.07 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.+.|+ |-+|.++++.|++.| ++|++.+|+....+. +... ..+... .| .+.+.++|+||-+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~-l~~~---~~~~~~-~~--~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRER-LEKE---LGVETS-AT--LPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHH-HHHH---TCCEEE-SS--CCCCCTTSEEEECS
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHH-hhhh---cccccc-cc--cccccccceEEEec
Confidence 67888885 999999999999887 799998886543322 2111 122222 11 22356689888664
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.46 E-value=0.03 Score=44.81 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.++||+|.|-| .|-+|+++++.|.+.|.+|++.+.+
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecch
Confidence 36889999998 7999999999999999999988764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.44 E-value=0.015 Score=45.42 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCeEEEEcCCchhHHH--HHHHHHHC----CCeEEEEecCCCCccccc---ccc--cCCCceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSH--LVDKLIDR----GDEVIVIDNFFTGRKDNL---VHH--FRNPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~--l~~~Ll~~----g~~V~~i~r~~~~~~~~~---~~~--~~~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
.|+|.|.|| |.+|.. ++..|+.. +.+++++|.+....+... .+. .......+...+-.++++.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 468999996 888765 34445543 358999998644332111 110 122345566655566788999999
Q ss_pred EEcccCCCCCCCcCChh------------------------HHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Q 021681 185 YHLACPASPVHYKYNPV------------------------KTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (309)
Q Consensus 185 ih~A~~~~~~~~~~~~~------------------------~~~~~Nv~gt~~ll~~a~~~~~--r~v~iS 229 (309)
+..++.........+.. ....-|+.-...+++.+++... .++.+|
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 99986421110000000 0012477888888888888765 344444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.37 E-value=0.0063 Score=47.16 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.+.+|+|+|++|.+|...+..+...|. .|++++++.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~ 63 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 63 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence 345899999999999999998888885 788887653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.35 E-value=0.048 Score=39.20 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=30.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++++|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 23 ~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 5899999 599999999999999999999987543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.031 Score=44.30 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=31.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
-++|.|.|| |.+|+.++..++..|++|+++|++..
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 468999996 99999999999999999999998754
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.038 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=30.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++++|.| +|+||.+++..|.+.|.+|+++.+..+
T Consensus 24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccc
Confidence 5899999 599999999999999999999987543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.15 E-value=0.059 Score=41.23 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.+.+|+|+| +|.+|...+..+...|.+|++++++..
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH
Confidence 345899997 689999999888889999999987543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.12 E-value=0.0059 Score=47.72 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEE-ecCCCCcccccccccCCCceEEEec---cccccc--c--CCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI--L--LEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i-~r~~~~~~~~~~~~~~~~~v~~~~~---Dl~~~~--~--~~~D~Vih 186 (309)
.+.+|+|.|+ |.+|...+..+...|++++.+ +++. .+.+..++ +... ++++. |..+.. + .++|+||.
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-~k~~~a~~-~Ga~--~~i~~~~~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-SRLELAKQ-LGAT--HVINSKTQDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-HHHHHHHH-HTCS--EEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-HHHHHHHH-cCCe--EEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence 3568999997 999999998888888865544 4432 22222222 2221 23332 222221 1 25899999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
+.|
T Consensus 103 ~~G 105 (174)
T d1f8fa2 103 STG 105 (174)
T ss_dssp CSC
T ss_pred cCC
Confidence 986
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.12 Score=46.03 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccc----------------------cccccCCCceEEEec
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN----------------------LVHHFRNPRFELIRH 171 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~----------------------~~~~~~~~~v~~~~~ 171 (309)
+.++|||.|+ |++|.++++.|+..|. ++.++|.+.-...+. +........+.....
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 4568999996 6799999999999997 888888642211110 001112234445554
Q ss_pred cccc---cccCCCCEEEEcc
Q 021681 172 DVVE---PILLEVDQIYHLA 188 (309)
Q Consensus 172 Dl~~---~~~~~~D~Vih~A 188 (309)
++.+ ..+.++|+||.+.
T Consensus 115 ~i~~~~~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFNDTFYRQFHIIVCGL 134 (426)
T ss_dssp CGGGBCHHHHTTCSEEEECC
T ss_pred cccchHHHHHHhcchheecc
Confidence 4433 3578899999887
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.09 E-value=0.037 Score=40.05 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=30.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++|+|.| +|++|.+++..|.+.|.+|+++.+..+
T Consensus 23 ~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEEC-CchHHHHHHHHHHhccccceeeehhcc
Confidence 5899999 599999999999999999999997543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.08 E-value=0.021 Score=45.47 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.....||+|.|.| .|-||+.+++.|..-|.+|+..++......... ..+...+-.++.+..+|+|+.+.
T Consensus 44 ~~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~--------~~~~~~~~l~~ll~~sD~i~~~~ 112 (193)
T d1mx3a1 44 AARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA--------LGLQRVSTLQDLLFHSDCVTLHC 112 (193)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH--------HTCEECSSHHHHHHHCSEEEECC
T ss_pred ceeeeCceEEEec-cccccccceeeeeccccceeeccCcccccchhh--------hccccccchhhccccCCEEEEee
Confidence 4457899999998 799999999999999999999887533221111 01122333445566677666554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.072 Score=41.23 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
..+||+|+|.|.+.-+|+.|+..|+++|+.|+.+...
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 4789999999999999999999999999999988753
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.97 E-value=0.064 Score=38.75 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=30.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++++|.| +|+||.+++..|.+.|.+|+++.+...
T Consensus 23 ~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 5899999 599999999999999999999987543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.97 E-value=0.017 Score=44.85 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=49.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccC-CCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~-~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
.+|+|.|| |-.|..-++...+.|.+|+++|.+....++ +...+. .......+.+...+.+.++|+||.++-+
T Consensus 33 a~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~-l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSY-LETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHH-HHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 48999994 899999999999999999999986544322 111111 1122222233456678899999999853
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.89 E-value=0.0067 Score=46.38 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.+.| +|-+|+++++.|++.|++|++.+|+..+.. .+.+... +. ...-.++.++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~-~l~~~~g---~~--~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSK-EIAEQLA---LP--YAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHH-HHHHHHT---CC--BCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHH-hhccccc---ee--eechhhhhhhccceeeeec
Confidence 5788887 799999999999999999999887643322 2211111 11 1122334567899998775
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.88 E-value=0.049 Score=40.29 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=30.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.++|+|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence 46899998 599999999999999999999987644
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.047 Score=39.30 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=29.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++|+|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 4788988 599999999999999999999987543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.83 E-value=0.045 Score=39.79 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
++++|.| +|++|.+++..|.+.|.+|+++.+..
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence 5899988 59999999999999999999998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.036 Score=42.71 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=43.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEecccccc--------ccCCCCEEEE
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIYH 186 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~--------~~~~~D~Vih 186 (309)
+.+|+|.|+ |.+|...+..+...|+ +|++++++..+.+ ....+....+.....+...+ .-.++|+||.
T Consensus 27 gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~--~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 27 GHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLS--KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHH--HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHH--HHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 458999986 9999999998888998 7888886543322 11122222222222111111 1136899999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
+.|
T Consensus 104 ~~G 106 (171)
T d1pl8a2 104 CTG 106 (171)
T ss_dssp CSC
T ss_pred ccC
Confidence 986
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.048 Score=39.81 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+++|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 5899999 589999999999999999999998643
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.79 E-value=0.016 Score=46.27 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=46.4
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
+....||+|.|.| .|.||+.+++.|..-|.+|++.++....... . .. ...+-.++.+..+|+|+.+.
T Consensus 38 g~el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~-----~~---~~~~~l~~~l~~sDii~~~~ 104 (197)
T d1j4aa1 38 GREVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE--K-----KG---YYVDSLDDLYKQADVISLHV 104 (197)
T ss_dssp BCCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--H-----TT---CBCSCHHHHHHHCSEEEECS
T ss_pred CccccCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc--c-----ce---eeeccccccccccccccccC
Confidence 3456889999999 7999999999999999999998764321111 0 01 12233455677788777665
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.092 Score=41.19 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=47.4
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
....+++|.|.| .|.||+.+++.+..-|.+|+..++........ ....+-.++.+..+|+|+.+..
T Consensus 40 ~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----------~~~~~~l~ell~~sDii~i~~p 105 (188)
T d1sc6a1 40 FEARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLGN-----------ATQVQHLSDLLNMSDVVSLHVP 105 (188)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTT-----------CEECSCHHHHHHHCSEEEECCC
T ss_pred ccccceEEEEee-cccchhhhhhhcccccceEeeccccccchhhh-----------hhhhhhHHHHHhhccceeeccc
Confidence 356789999997 79999999999999999999998643221110 1222345567777898887764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.15 Score=36.44 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~ 153 (309)
.+.+|.|.| +|.+|+-++....+.|++|++++.+....
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~P 47 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAP 47 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence 445899999 69999999999999999999999765443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=93.65 E-value=0.28 Score=37.44 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC-CeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEccc
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~ 189 (309)
.++|.|.| .|.+|+..++.|.+.. .+++++......... .......+-.+....++|+|+.+..
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~~~~~~~~~~~~D~Vvi~tp 67 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCMG 67 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------ccccccchhhhhhccccceEEEeCC
Confidence 35789998 6999999999998763 466665543221111 1122333444445678999998864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.076 Score=41.47 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=51.6
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc-----------cc-------cccccCCCceEE-Eec
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-----------DN-------LVHHFRNPRFEL-IRH 171 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~-----------~~-------~~~~~~~~~v~~-~~~ 171 (309)
....+.|+|+|.| +|..|.+.+..|.++|++|+++.+....-- .. ....+....+++ ...
T Consensus 38 ~~~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~ 116 (179)
T d1ps9a3 38 LPAVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH 116 (179)
T ss_dssp CSCSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred CCCCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence 3345668999999 599999999999999999999997543110 00 000011123443 334
Q ss_pred cccccccCCCCEEEEcccC
Q 021681 172 DVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 172 Dl~~~~~~~~D~Vih~A~~ 190 (309)
+++.+...+.|.||...|.
T Consensus 117 ~Vt~~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 117 TVTADQLQAFDETILASGI 135 (179)
T ss_dssp CCCSSSSCCSSEEEECCCE
T ss_pred EEcccccccceeEEEeecC
Confidence 5555566778888888763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.44 E-value=0.027 Score=44.30 Aligned_cols=39 Identities=13% Similarity=-0.068 Sum_probs=30.8
Q ss_pred CCeEEE-EcCCchhHHHHHHHHHHCCCeEEEEecCCCCcc
Q 021681 116 RLRIVV-TGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (309)
Q Consensus 116 ~k~VlI-TGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~ 154 (309)
|.+++| +||+|.+|...++.....|.+|+++.+.....+
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~ 68 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence 445666 699999999999888888999999987654433
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.37 E-value=0.069 Score=38.23 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++++|.| +|++|.+++..|.+.|.+|+++.+...
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeecc
Confidence 4788888 599999999999999999999987543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=93.21 E-value=0.051 Score=42.97 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=47.0
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.....++++.|.| .|.||+.+++.+..-|.+|...++.......... ......+-.++.+..+|+|+.+.
T Consensus 42 ~~~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-------~~~~~~~~l~~ll~~sD~v~l~~ 111 (191)
T d1gdha1 42 GEKLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS-------YQATFHDSLDSLLSVSQFFSLNA 111 (191)
T ss_dssp BCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH-------HTCEECSSHHHHHHHCSEEEECC
T ss_pred cceecccceEEee-cccchHHHHHHHHhhccccccccccccccchhhc-------ccccccCCHHHHHhhCCeEEecC
Confidence 4456889999999 6999999999999999999988864332221110 11123344556667778776554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=93.18 E-value=0.064 Score=42.65 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=46.2
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
....+|+|.|.| .|-||+.+++.|..-|.+|++.++....... ..++. .-.++.+..+|+|+.+.
T Consensus 41 ~~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--------~~~~~---~~l~~l~~~~D~v~~~~ 105 (199)
T d1dxya1 41 KELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH--------PDFDY---VSLEDLFKQSDVIDLHV 105 (199)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC--------TTCEE---CCHHHHHHHCSEEEECC
T ss_pred ccccceeeeeee-cccccccccccccccceeeeccCCccchhhh--------cchhH---HHHHHHHHhcccceeee
Confidence 356788999999 7999999999999999999998875332111 12222 22455667788887665
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.14 E-value=0.08 Score=38.05 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=30.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
+++++|.| +|++|..++..|.+.|.+|.++.+...
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 57899998 599999999999999999999987543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.10 E-value=0.069 Score=41.96 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=45.8
Q ss_pred cCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 112 ~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
....++++.|.| .|.||+.+++.|..-|.+|...++.......... ..+...+..++.++.+|+|+.+.
T Consensus 40 ~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-------~~~~~~~~l~~~l~~sD~v~~~~ 108 (188)
T d2naca1 40 YDLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-------LNLTWHATREDMYPVCDVVTLNC 108 (188)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-------HTCEECSSHHHHGGGCSEEEECS
T ss_pred eeccccceeecc-ccccchhhhhhhhccCceEEEEeecccccccccc-------ccccccCCHHHHHHhccchhhcc
Confidence 346788999999 7999999999999999999999875332211100 01122334455667777776554
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.96 E-value=0.05 Score=42.13 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=30.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~ 152 (309)
|+|-|.| .|.+|..+++.|++.|++|.+.+|+..+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~ 36 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSK 36 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence 5788887 8999999999999999999999886443
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.93 E-value=0.086 Score=38.27 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=28.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
++++|.| +|+||.+++..|.+.|.+|+++.++
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 4788888 5999999999999999999999864
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.88 E-value=0.073 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.|+|+|.| +|..|...+..|.++|++|+++++.
T Consensus 6 ~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35799999 4999999999999999999999975
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.87 E-value=0.048 Score=42.14 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~ 151 (309)
.|.+|+|.|+ |.+|...+..+...|. .|++++++..
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD 64 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHH
Confidence 4569999998 6689999999999986 7777776543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.74 E-value=0.066 Score=43.67 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=30.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
+|+|+|.| +|.-|...+.+|.+.|++|+++.+.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 57999999 5999999999999999999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.74 E-value=0.069 Score=40.47 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC--eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~--~V~~i~r~~ 150 (309)
.||+|+|.|| |++|..++..|.+.++ +|+++++..
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4789999995 8999999999999875 788887543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.67 E-value=0.051 Score=42.20 Aligned_cols=70 Identities=17% Similarity=0.038 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEeccccc----c-----ccCCCCEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE----P-----ILLEVDQI 184 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~----~-----~~~~~D~V 184 (309)
.|.+|+|.| .|.||...+..+...|. .|++.+.+..+ .+ ..+.+.... .++....+ . .-.++|++
T Consensus 28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-~~-~a~~~Ga~~--~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEK-FP-KAKALGATD--CLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGG-HH-HHHHTTCSE--EECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHH-HH-HHHHhCCCc--ccCCccchhhhhhhHhhhhcCCCcEE
Confidence 455999998 59999999999999998 56666654332 22 222222221 22211111 1 12469999
Q ss_pred EEccc
Q 021681 185 YHLAC 189 (309)
Q Consensus 185 ih~A~ 189 (309)
|.+.|
T Consensus 103 ie~~G 107 (174)
T d1e3ia2 103 LDCAG 107 (174)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 99996
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.58 E-value=0.079 Score=45.06 Aligned_cols=34 Identities=32% Similarity=0.665 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
+.|+|+|.| +|.-|...+..|.+.|++|.++...
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~ 34 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQR 34 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECC
Confidence 367999999 5999999999999999999999864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.49 E-value=0.041 Score=43.41 Aligned_cols=71 Identities=20% Similarity=0.073 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccc---------cccccCCCceEEEeccccccccCCCCEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---------LVHHFRNPRFELIRHDVVEPILLEVDQIY 185 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~---------~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vi 185 (309)
.|++|.|.| +|..|.+++..|.+.|++|++.+|+......- +....-..++. . .+-.+++++++|+||
T Consensus 6 ~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~-~-t~~l~~a~~~ad~ii 82 (189)
T d1n1ea2 6 YLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNIT-F-TSDVEKAYNGAEIIL 82 (189)
T ss_dssp CEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEE-E-ESCHHHHHTTCSCEE
T ss_pred eeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccc-c-chhhhhccCCCCEEE
Confidence 456899999 58999999999999999999998764322100 00000112222 1 233455678899998
Q ss_pred Ecc
Q 021681 186 HLA 188 (309)
Q Consensus 186 h~A 188 (309)
.+.
T Consensus 83 iav 85 (189)
T d1n1ea2 83 FVI 85 (189)
T ss_dssp ECS
T ss_pred EcC
Confidence 765
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.36 E-value=0.14 Score=39.21 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCe-EEEEecCCCCcccccccccCCCceEEEecc----cccc-----ccCCCCEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHD----VVEP-----ILLEVDQI 184 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~-V~~i~r~~~~~~~~~~~~~~~~~v~~~~~D----l~~~-----~~~~~D~V 184 (309)
.|.+|+|.|+ |.+|...+..+...|.. |++++++. .+.+... .+.... .++.+ .... .-.++|+|
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~-~k~~~ak-~lGa~~--~i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK-DKFARAK-EFGATE--CINPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG-GGHHHHH-HHTCSE--EECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccH-HHHHHHH-HhCCcE--EEeCCchhhHHHHHHHHHcCCCCcEe
Confidence 3558999997 67899999888888974 55555432 2222222 222222 22221 1111 12469999
Q ss_pred EEccc
Q 021681 185 YHLAC 189 (309)
Q Consensus 185 ih~A~ 189 (309)
|.+.|
T Consensus 103 id~~G 107 (176)
T d2fzwa2 103 FECIG 107 (176)
T ss_dssp EECSC
T ss_pred eecCC
Confidence 99986
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.30 E-value=0.08 Score=43.06 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.++|++|.|-| -|-+|+++++.|.+.|..|++.+.+
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~ 71 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVN 71 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeeccc
Confidence 36789999999 7999999999999999999988764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.27 E-value=0.12 Score=37.69 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=29.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
++++|.| +|+||.+++..|.+.|.+|+++.+..
T Consensus 27 ~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 5899999 59999999999999999999998754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.22 E-value=0.016 Score=45.20 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.+.+|+|.|+ |.+|...+..+...|+ +|++++.+.
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh
Confidence 3558999986 9999999888888887 688888653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.07 E-value=0.051 Score=42.14 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.|.+|+|.|+ |.+|...+..+...|. .|++++++.
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChH
Confidence 4569999985 9999999999988987 677777654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.03 E-value=0.19 Score=34.32 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=43.3
Q ss_pred CeEEEEcCCchhH-HHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 117 LRIVVTGGAGFVG-SHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 117 k~VlITGatG~IG-~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
|+|.+.|-. ++| +.|++.|.++|+.|...|+......+.+ ....+.+... -..+.+.++|.||...++
T Consensus 2 ~~ihfiGIg-G~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L----~~~Gi~i~~g-h~~~~i~~~d~vV~SsAI 70 (89)
T d1j6ua1 2 MKIHFVGIG-GIGMSAVALHEFSNGNDVYGSNIEETERTAYL----RKLGIPIFVP-HSADNWYDPDLVIKTPAV 70 (89)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHH----HHTTCCEESS-CCTTSCCCCSEEEECTTC
T ss_pred cEEEEEeEC-HHHHHHHHHHHHhCCCeEEEEeCCCChhHHHH----HHCCCeEEee-ecccccCCCCEEEEecCc
Confidence 678888854 455 4789999999999999997543222222 2223333322 222335679999998864
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.98 E-value=0.092 Score=40.58 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~ 151 (309)
+|+|+|.| +|..|...+..|.+.|+ +|+++.+...
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 57899999 59999999999999998 5999887543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.92 E-value=0.074 Score=38.65 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
++++|.| +|+||.+++..|.+.|.+|+++.+...
T Consensus 26 ~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5899998 599999999999999999999987654
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.90 E-value=0.089 Score=41.20 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred ccCCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 111 ~~~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
.....+|++.|.| .|.||+.+++.+..-|.+|+..++......... ..+.. .-.++.+..+|+|+.+.
T Consensus 39 ~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~------~~~~~---~~l~ell~~sDiv~~~~ 106 (184)
T d1ygya1 39 GTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ------LGIEL---LSLDDLLARADFISVHL 106 (184)
T ss_dssp BCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH------HTCEE---CCHHHHHHHCSEEEECC
T ss_pred cccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhh------cCcee---ccHHHHHhhCCEEEEcC
Confidence 3456788999998 699999999999999999999886533221110 01111 22355677788777655
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=91.88 E-value=0.33 Score=33.50 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCchhH-HHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 115 RRLRIVVTGGAGFVG-SHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 115 ~~k~VlITGatG~IG-~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
+.|+|.+.|- |++| ++|++.|.++|++|...|+........+.+ ..+.+...+-. ..+.++|.||...|+
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~-~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ----AGAKIYIGHAE-EHIEGASVVVVSSAI 77 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH----TTCEEEESCCG-GGGTTCSEEEECTTS
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH----CCCeEEECCcc-ccCCCCCEEEECCCc
Confidence 5578999885 4455 778999999999999999753322222221 23444443333 345789999988764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.11 Score=39.22 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEec
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDN 148 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r 148 (309)
||+|.|.|+||.||...++-+.+.. .+|+++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 5789999999999999999888764 47777653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.61 E-value=0.54 Score=34.71 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred CCeEEEEcCC---chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCC
Q 021681 116 RLRIVVTGGA---GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (309)
Q Consensus 116 ~k~VlITGat---G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~ 192 (309)
.|+|.|.|++ +..|..+++.|.+.|++|+.+... ...+.. .. .-.++ .+.-..+|+++-+..
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~----~~~i~G------~~-~~~sl-~dlp~~iD~v~i~vp--- 83 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK----YEEVLG------RK-CYPSV-LDIPDKIEVVDLFVK--- 83 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT----CSEETT------EE-CBSSG-GGCSSCCSEEEECSC---
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc----ccccCC------Cc-ccccc-cccCccceEEEEEeC---
Confidence 3589999998 789999999999999998887532 111110 00 01122 122245788776641
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 021681 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (309)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iSS~ 231 (309)
-..+..+++.|.+.|++.+++.+.
T Consensus 84 ---------------~~~~~~~~~e~~~~g~k~v~~~~G 107 (139)
T d2d59a1 84 ---------------PKLTMEYVEQAIKKGAKVVWFQYN 107 (139)
T ss_dssp ---------------HHHHHHHHHHHHHHTCSEEEECTT
T ss_pred ---------------HHHHHHHHHHHHHhCCCEEEEecc
Confidence 223557788888888877766443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=91.24 E-value=0.1 Score=42.61 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.|+|.| +|.+|..++.+|+++|.+|+++++.
T Consensus 6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 389998 5999999999999999999999975
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.95 E-value=0.11 Score=42.11 Aligned_cols=32 Identities=25% Similarity=0.634 Sum_probs=29.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
|+|+|.|| |.-|...+..|.++|++|+++.+.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence 57999995 999999999999999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.93 E-value=0.14 Score=39.49 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~ 151 (309)
.|.+|+|+|+ |.+|...+..+...|+ +|++++++..
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence 3569999996 8999999998888997 7999987543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=90.86 E-value=0.13 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEec
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDN 148 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r 148 (309)
.|+|.|.|+||.||...++-+.+.. ++|+++.-
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 4799999999999999998887753 57777653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.78 E-value=0.047 Score=42.10 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCCcccccccccCCCceEEEec--cccccc-----cCCCCEEEE
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEPI-----LLEVDQIYH 186 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~--Dl~~~~-----~~~~D~Vih 186 (309)
.+.+|+|.|+ |.+|...+..+...|. .|++++++..+ .+...+ +... .++.. |..+.. -.++|+||.
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k-~~~~~~-~ga~--~~i~~~~~~~~~~~~~~~~~g~d~vid 106 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEK-LKLAER-LGAD--HVVDARRDPVKQVMELTRGRGVNVAMD 106 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHH-HHHHHH-TTCS--EEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHH-HHHHhh-cccc--eeecCcccHHHHHHHhhCCCCceEEEE
Confidence 3568999885 9999999888887886 55666654322 122221 1211 23322 221111 135999999
Q ss_pred ccc
Q 021681 187 LAC 189 (309)
Q Consensus 187 ~A~ 189 (309)
++|
T Consensus 107 ~~g 109 (172)
T d1h2ba2 107 FVG 109 (172)
T ss_dssp SSC
T ss_pred ecC
Confidence 986
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=90.76 E-value=0.23 Score=37.66 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC-CC-eEEEEe-cCCCCcccccccccCCCceEEEe--cc-c-cccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVID-NFFTGRKDNLVHHFRNPRFELIR--HD-V-VEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~-g~-~V~~i~-r~~~~~~~~~~~~~~~~~v~~~~--~D-l-~~~~~~~~D~Vih~A 188 (309)
.+|.|.| +|.+|..+..++++. .. +++++. ++.........+.. .+.... .| + .++.+.++|+||.+.
T Consensus 5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~---~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM---GVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT---TCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc---CCcccccceeeeeecccccccCEEEEcC
Confidence 5899999 899999765555553 33 666654 43332221111111 122221 12 1 222456799999874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.70 E-value=0.13 Score=40.27 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=27.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
|+|.|.| .|++|..++..| ++|++|+++|.+..
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHH
Confidence 6889997 899999998655 67999999997643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.67 E-value=0.19 Score=37.97 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~ 151 (309)
.+.+|+|.|+ |.+|...+..+...|.+|++++++..
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~ 62 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDA 62 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhh
Confidence 3568999886 99999999888888999999987543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.14 Score=34.15 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+|+|.|.| +|.+|+-++..-.+.|.+|++++...
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 47899999 59999999999999999999998643
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=90.63 E-value=0.13 Score=39.26 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~ 190 (309)
..||+++|.| =|++|+-+++.|...|.+|+++..++-..-+... ..+++.. .++++...|++|-+.|-
T Consensus 21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m-----dGf~v~~---~~~a~~~aDi~vTaTGn 88 (163)
T d1v8ba1 21 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVM-----EGFNVVT---LDEIVDKGDFFITCTGN 88 (163)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT-----TTCEECC---HHHHTTTCSEEEECCSS
T ss_pred ecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHHh-----cCCccCc---hhHccccCcEEEEcCCC
Confidence 5789999999 6999999999999999999999876433222221 2233322 23455667777777653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=90.49 E-value=0.2 Score=40.30 Aligned_cols=34 Identities=32% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.++|+|.|| |..|..++..|.++|++|+++.+..
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 358999995 9999999999999999999998754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.21 E-value=0.2 Score=41.39 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
+.|+|+|.| +|..|...+..|.++|++|+++...
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 346899999 5999999999999999999999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.20 E-value=0.28 Score=39.27 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
...++|+|.| +|..|...+..|.+.|++|+++....
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence 4668999999 59999999999999999999998653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.20 E-value=0.25 Score=36.95 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=28.1
Q ss_pred CeEEEE-cCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 117 LRIVVT-GGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlIT-GatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+.++|. .++||||.+++..|.+.|.+|+++.+..
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 355555 3569999999999999999999998753
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=89.89 E-value=0.24 Score=38.01 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=41.6
Q ss_pred CCeEEEEcCCchhHHH-HHHHHHHCC-----CeEEEEecCCCCcccc---cccc--cCCCceEEEeccccccccCCCCEE
Q 021681 116 RLRIVVTGGAGFVGSH-LVDKLIDRG-----DEVIVIDNFFTGRKDN---LVHH--FRNPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 116 ~k~VlITGatG~IG~~-l~~~Ll~~g-----~~V~~i~r~~~~~~~~---~~~~--~~~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
..+|.|.||++ +|.. ++..++..- .+++++|.+....+.. +... .......+....-..++++++|+|
T Consensus 3 ~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 3 SFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp CEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 34788889854 4543 445555431 3788888764433211 1110 012233444333345678899999
Q ss_pred EEcccC
Q 021681 185 YHLACP 190 (309)
Q Consensus 185 ih~A~~ 190 (309)
|..|+.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999975
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.80 E-value=0.14 Score=39.51 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG 152 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~~ 152 (309)
.|.+|+|+|+ |.+|...+..+...|. +|++++.+..+
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~k 66 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDK 66 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHH
Confidence 4568999985 9999999999999995 89999876543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.56 E-value=0.26 Score=37.77 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=59.8
Q ss_pred CeEEEEcCC-chhHHHHHHHHHHCC----CeEEEEecCCCCcccccccc-----c--CCCceEEEeccccccccCCCCEE
Q 021681 117 LRIVVTGGA-GFVGSHLVDKLIDRG----DEVIVIDNFFTGRKDNLVHH-----F--RNPRFELIRHDVVEPILLEVDQI 184 (309)
Q Consensus 117 k~VlITGat-G~IG~~l~~~Ll~~g----~~V~~i~r~~~~~~~~~~~~-----~--~~~~v~~~~~Dl~~~~~~~~D~V 184 (309)
++|.|.||+ .+.+..++..+.... .+++++|.+......+..+. + ......+....-..+.+++.|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 578899973 344455544444432 37888886543221111111 0 12233443333334567899999
Q ss_pred EEcccCCCCCCCcC----------------Ch--hHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Q 021681 185 YHLACPASPVHYKY----------------NP--VKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (309)
Q Consensus 185 ih~A~~~~~~~~~~----------------~~--~~~~~~Nv~gt~~ll~~a~~~~~-r~v~iSS 230 (309)
|..|+......... .+ .....-|+.-...+++.+++... -++++-|
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99997532111000 00 01123577777888888888765 3444443
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=89.47 E-value=0.29 Score=37.66 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=26.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEec
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDN 148 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r 148 (309)
|++|.|-| -|-||+.+++.|++++. +|+.+..
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence 56899998 79999999999988875 6666653
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.10 E-value=0.35 Score=37.16 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=25.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEec
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDN 148 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r 148 (309)
.++|.|-| .|-||+.+++.++++.. +|+.+..
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 35899999 69999999999988754 6666653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.59 E-value=0.17 Score=36.67 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=44.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEecccccc------ccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~------~~~~~D~Vih~A 188 (309)
|.|+|.|. |-+|..+++.|. ++.|++++.+...... .....+.++.+|.+++ .+.+++.++-+.
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~-----~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKK-----VLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHH-----HHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHH-----HHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 46888885 789999999984 5678887764432221 1224577888998877 345688888765
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.57 E-value=0.26 Score=37.38 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
++++|+|.| +|++|.+++..|.+.|.+|.++.+
T Consensus 2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~ 34 (185)
T d1q1ra1 2 ANDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLV 34 (185)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEe
Confidence 456899998 599999999999999987665543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.42 E-value=0.26 Score=38.47 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=28.5
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.|+|.| +|.-|...+..|+++|.+|.++.+..
T Consensus 7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 378888 69999999999999999999998753
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.06 E-value=3.1 Score=29.20 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=51.8
Q ss_pred CeEEEEcCC---chhHHHHHHHHHHCCCeEEEEecCCCCcccccccccCCCceEEEeccccccccCCCCEEEEcccCCCC
Q 021681 117 LRIVVTGGA---GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (309)
Q Consensus 117 k~VlITGat---G~IG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A~~~~~ 193 (309)
|+|.|.|++ +..|..+++.|++.|++|+.+... .+.+. .+..+ .++ .+.-..+|.++-+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~----~~~i~------G~~~y-~sl-~~lp~~~D~vvi~vp---- 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN----YDEIE------GLKCY-RSV-RELPKDVDVIVFVVP---- 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT----CSEET------TEECB-SSG-GGSCTTCCEEEECSC----
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc----ccccc------Ccccc-ccc-hhccccceEEEEEeC----
Confidence 689999987 779999999999999998877421 11111 01000 111 122235788876641
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 021681 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229 (309)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r~v~iS 229 (309)
-..+..+++.|.+.|.+.+++-
T Consensus 66 --------------~~~~~~~l~~~~~~g~k~v~~~ 87 (116)
T d1y81a1 66 --------------PKVGLQVAKEAVEAGFKKLWFQ 87 (116)
T ss_dssp --------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred --------------HHHHHHHHHHHHhcCCceEEec
Confidence 2234567778888888766553
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.49 E-value=0.25 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=28.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
|..|+|.| +|.-|..++++|++.|.+|.++...
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKR 33 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECC
Confidence 34789999 5999999999999999999999864
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.48 E-value=0.3 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=25.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEec
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDN 148 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r 148 (309)
-+|.|-| .|-||+.++|.+.+++. +|+.+..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3788998 89999999999998764 7777754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.44 E-value=0.44 Score=36.98 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=30.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCCCCc
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~~~~ 153 (309)
+|+|.|| |-.|..-++.....|..|.++|.+....
T Consensus 31 ~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~ 65 (183)
T d1l7da1 31 RVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATK 65 (183)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTH
T ss_pred EEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHH
Confidence 8999995 8999999999999999999999876543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=87.15 E-value=0.45 Score=38.70 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.+++++|+|-| .|-+|+++++.|.+.|.+|+.++..
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence 46788999998 7999999999999999999887753
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.05 E-value=0.35 Score=39.43 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=28.0
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.|+|.| +|..|..++.+|+++|.+|+++++.
T Consensus 5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 488888 5999999999999999999999875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.98 E-value=0.071 Score=42.15 Aligned_cols=35 Identities=29% Similarity=0.128 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.|.+|+|.|+ |.+|...+..+...|. +|++++.+.
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccc
Confidence 3559999985 8999888877777777 677777643
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=0.52 Score=38.48 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
..+|+|.| +|.-|...+.+|.+.|++|+++...
T Consensus 5 ~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 5 TGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35799999 5999999999999999999998753
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.69 E-value=0.49 Score=33.53 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHHC---CCeEEEEecCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDR---GDEVIVIDNFF 150 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~---g~~V~~i~r~~ 150 (309)
++++|.|| |++|.+++..|.+. |.+|+++.+..
T Consensus 21 ~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 58999996 99999999766554 45799988643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.46 E-value=0.53 Score=39.35 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
.+++++|.|-| .|-+|+++++.|.+.|..|+.++..
T Consensus 33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp SSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 57889999999 6999999999999999999887643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=86.30 E-value=0.34 Score=36.82 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
.+.+|+|.|+ |.+|...+..+...|. .|+++++..
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchH
Confidence 4558999986 5677777777877776 677777643
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=86.21 E-value=0.35 Score=39.98 Aligned_cols=32 Identities=47% Similarity=0.761 Sum_probs=27.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~ 150 (309)
+|+|.| +|.+|.+++.+|+++|. +|+++++..
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 588998 58999999999999996 799998763
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.97 E-value=0.5 Score=35.43 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
.+.+|+|.|+ |.+|...+..+...|++|++++.+.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCH
Confidence 3558999875 8999999888888999999887643
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=85.93 E-value=2.4 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=27.8
Q ss_pred CeEEEEcCC---chhHHHHHHHHHHCCCeEEEEec
Q 021681 117 LRIVVTGGA---GFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 117 k~VlITGat---G~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
|+|.|.||| +-.|..+++.|.+.|++++.+.-
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~ 48 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNP 48 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEe
Confidence 589999997 67899999999999999887653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.21 E-value=0.073 Score=42.47 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCCeE
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGDEV 143 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~~V 143 (309)
|+|+|.| +|.+|..++.+|+++|++|
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCc
Confidence 6899999 5999999999999999754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.02 E-value=0.38 Score=39.36 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.9
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecCC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~~ 150 (309)
+|+|.|| |-.|..++..|.+.|.+|+++.+..
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6999995 7999999999999999999998754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=84.95 E-value=2.1 Score=30.63 Aligned_cols=92 Identities=14% Similarity=0.016 Sum_probs=53.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHH-CCCeEEEEecCCCCcccccccccCCCceEEEecccccccc-CCCCEEEEcccCCCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLACPASPV 194 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~-~~~D~Vih~A~~~~~~ 194 (309)
.+|+|.| +|.+|+.|++.+.. .+++++++......+..... ..+.+...|...... +.+++++-+..
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I-----~Gi~V~~~~~l~~~~~~~i~iai~~i~----- 72 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV-----RGGVIEHVDLLPQRVPGRIEIALLTVP----- 72 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE-----TTEEEEEGGGHHHHSTTTCCEEEECSC-----
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE-----CCEEEecHHHHHHHHhhcccEEEEeCC-----
Confidence 3799999 58999999987754 46688776554332222111 134445555444433 34666665541
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHcCCc-EEEEeccc
Q 021681 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232 (309)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~r-~v~iSS~~ 232 (309)
. .....+++.|.+.|++ +..++...
T Consensus 73 -----~--------~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 73 -----R--------EAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp -----H--------HHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred -----H--------HHHHHHHHHHHHcCCCEEeecCcee
Confidence 1 1234677888888885 55554433
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.88 E-value=1.2 Score=35.93 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHC-CCeEEEEecC
Q 021681 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF 149 (309)
Q Consensus 114 ~~~k~VlITGatG~IG~~l~~~Ll~~-g~~V~~i~r~ 149 (309)
.++++|.|-| .|-+|+++++.|.++ |..|+.+...
T Consensus 30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence 5788999999 599999999999865 8888877653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=84.87 E-value=0.56 Score=36.17 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF 149 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~ 149 (309)
|+|+|.|| |++|.+++..|.+.+ .+|+++.+.
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 68999995 899999999998875 478888764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.16 E-value=0.67 Score=38.95 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHCC--CeEEEEecCC
Q 021681 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFF 150 (309)
Q Consensus 115 ~~k~VlITGatG~IG~~l~~~Ll~~g--~~V~~i~r~~ 150 (309)
.+|+|+|.| +|.-|...+..|+++| ++|+++.+..
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 457999999 4899999999999887 4899988763
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=83.53 E-value=0.56 Score=38.40 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHCCCeEEEEec
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r 148 (309)
.+++++|.|-| .|-+|+++++.|.+.|.+|+.+..
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 46788999999 799999999999999999988764
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.24 E-value=1.3 Score=35.54 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHH-CCCeEEEEec
Q 021681 113 GRRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDN 148 (309)
Q Consensus 113 ~~~~k~VlITGatG~IG~~l~~~Ll~-~g~~V~~i~r 148 (309)
..++++|.|-| .|-+|+++++.|.+ .|..|+.++.
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence 35788999998 89999999999975 5999887764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.84 Score=33.21 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=27.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHH----CCCeEEEEecCCC
Q 021681 116 RLRIVVTGGAGFVGSHLVDKLID----RGDEVIVIDNFFT 151 (309)
Q Consensus 116 ~k~VlITGatG~IG~~l~~~Ll~----~g~~V~~i~r~~~ 151 (309)
.++++|.|| |++|.+++..|.+ .|.+|+++.+...
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 458999985 9999999988853 5889999887543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=83.03 E-value=1.2 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHH---CCCeEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~---~g~~V~~i~r~~~ 151 (309)
++++|.| +|++|.+++..|.+ .|.+|+++.+...
T Consensus 19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence 5899999 59999999976654 3779999987543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.51 E-value=0.74 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=27.3
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCC-eEEEEecC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~ 149 (309)
+|+|.| +|.-|...+..|.+.|. +|+++.+.
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECC
Confidence 588998 59999999999999996 79999865
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=81.86 E-value=0.52 Score=35.68 Aligned_cols=73 Identities=29% Similarity=0.336 Sum_probs=41.4
Q ss_pred CeEEEEcCCchhHHHHHHH-HHHC-----CCeEEEEecCCCCccccc--ccccCCCceEEEeccccccccCCCCEEEEcc
Q 021681 117 LRIVVTGGAGFVGSHLVDK-LIDR-----GDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~-Ll~~-----g~~V~~i~r~~~~~~~~~--~~~~~~~~v~~~~~Dl~~~~~~~~D~Vih~A 188 (309)
|+|.|.|| |.+|..++-. |++. +.+++++|.+..+..... .+........+....-.++.++++|+||..|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita 79 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 79 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence 57999998 4466555533 3321 248999987654322111 0111112333333333456789999999999
Q ss_pred cC
Q 021681 189 CP 190 (309)
Q Consensus 189 ~~ 190 (309)
+.
T Consensus 80 ~~ 81 (162)
T d1up7a1 80 RP 81 (162)
T ss_dssp CT
T ss_pred cc
Confidence 74
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=81.73 E-value=0.7 Score=39.15 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=27.3
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
|+|.| +|+-|..++.+|.+.|.+|.++.+-
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 77888 7999999999999999999999874
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.60 E-value=1 Score=35.89 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHHCCC-eEEEEecCCC
Q 021681 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (309)
Q Consensus 117 k~VlITGatG~IG~~l~~~Ll~~g~-~V~~i~r~~~ 151 (309)
++|+|.|| |..|..++..|.+.|. +|+++.+...
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 47999995 8999999999999995 8888887543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.45 E-value=1.1 Score=33.01 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=25.0
Q ss_pred eEEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 118 ~VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
+|+|.| +|++|.+++..|. ++.+|+++.+.
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~ 31 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKE 31 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEecc
Confidence 688888 5899999999885 46799998864
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=0.86 Score=37.77 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=23.1
Q ss_pred CeEEEEcC-C-chh--HHHHHHHHHHCCCeEEEEec
Q 021681 117 LRIVVTGG-A-GFV--GSHLVDKLIDRGDEVIVIDN 148 (309)
Q Consensus 117 k~VlITGa-t-G~I--G~~l~~~Ll~~g~~V~~i~r 148 (309)
|+|+|++| | |.+ +.+|+++|.++|++|..+..
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 56777764 3 333 44688999999999987763
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.03 E-value=1 Score=37.05 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=27.1
Q ss_pred EEEEcCCchhHHHHHHHHHHCCCeEEEEecC
Q 021681 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (309)
Q Consensus 119 VlITGatG~IG~~l~~~Ll~~g~~V~~i~r~ 149 (309)
|+|.| +|.-|...+..|.++|++|+++.+.
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEAR 31 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 77888 5999999999999999999999864
|