Citrus Sinensis ID: 021685
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | 2.2.26 [Sep-21-2011] | |||||||
| Q38906 | 313 | Translocase of chloroplas | yes | no | 0.987 | 0.974 | 0.693 | 1e-127 | |
| Q41009 | 310 | Translocase of chloroplas | N/A | no | 0.974 | 0.970 | 0.685 | 1e-120 | |
| O23680 | 297 | Translocase of chloroplas | no | no | 0.951 | 0.989 | 0.610 | 1e-105 | |
| Q9LUS2 | 1089 | Translocase of chloroplas | no | no | 0.627 | 0.178 | 0.333 | 2e-26 | |
| Q9SLF3 | 1206 | Translocase of chloroplas | no | no | 0.627 | 0.160 | 0.342 | 4e-25 | |
| Q552Z6 | 449 | GTP-binding protein A OS= | yes | no | 0.715 | 0.492 | 0.322 | 2e-24 | |
| O81283 | 1503 | Translocase of chloroplas | no | no | 0.673 | 0.138 | 0.330 | 2e-24 | |
| Q6S5G3 | 793 | Translocase of chloroplas | no | no | 0.627 | 0.244 | 0.328 | 5e-23 | |
| Q6P9H5 | 292 | GTPase IMAP family member | yes | no | 0.466 | 0.493 | 0.300 | 5e-06 | |
| P70224 | 277 | GTPase IMAP family member | yes | no | 0.433 | 0.483 | 0.290 | 1e-05 |
| >sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/310 (69%), Positives = 259/310 (83%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: - |
| >sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/302 (68%), Positives = 246/302 (81%), Gaps = 1/302 (0%)
Query: 1 MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +REW GI F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240
RSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEKVLPNG AWIP+LV+TI
Sbjct: 181 RSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239
Query: 241 TEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP 300
TEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ KP+ I+ D A E KP
Sbjct: 240 TEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299
Query: 301 VW 302
W
Sbjct: 300 AW 301
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Pisum sativum (taxid: 3888) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 230/295 (77%), Gaps = 1/295 (0%)
Query: 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ KL+E GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246
K + + M+K++ + S + VV ENSGRC+KN+ DEK LPNG AWIPNLVK IT+V N
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 243
Query: 247 GSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV 301
KA+ VDKK+V+G ++KGK LIP I QY I+K + AI++D KP+
Sbjct: 244 QRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQY-LIVKMIQGAIRNDIKTSGKPL 297
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Binds GTP, GDP, XTP, but not ATP. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast, especially during early development stages. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E ++ FQ + + G + ++DTPGL+
Sbjct: 456 SCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLL 515
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
+ N ++ ++ F+ D++LY+DRLD+ D+ D + R ITD FG IW
Sbjct: 516 PSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWF 575
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA + PD + Y++F ++RS + + + + + PV LV
Sbjct: 576 NAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 630
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C N ++VLPNG W P+L+
Sbjct: 631 ENHSACRTNRAGQRVLPNGQVWKPHLL 657
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+ TI+V+GK GVGKS+T+NSI E FQ R V G + ++DTPGL+
Sbjct: 574 SCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLL 633
Query: 99 ---EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
N + +K F+ D++LY+DRLD+ D+ D + R I+D FG IW
Sbjct: 634 PSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWF 693
Query: 156 RALIVLTHAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA PD + Y++F ++RS + + + + + PV LV
Sbjct: 694 NAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLV 748
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C N ++VLPNG W P+L+
Sbjct: 749 ENHSACRTNRAGQRVLPNGQVWKPHLL 775
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80
T +L E+L LK N +L++G+ GVGKSST+N++ G + V + +S P
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFG-IDIPVHSSESCTQDPFTY 191
Query: 81 SRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138
SR GF LNI+DTPG ++ G V+ + + I+R+L KTI +L+V++ R D
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251
Query: 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK------------RSEALL 186
+ + T+ G Q+W+ A +VLT+A LPD Y+ F + R+
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310
Query: 187 KFVSP-STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244
KF + + + D +PV +ENS RC +NE ++VL +GT + L+ + ++V
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 28/236 (11%)
Query: 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM 79
A + K +E + +E + +L ILV+GK GVGKS+T+NSI+G + ++ F
Sbjct: 836 AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895
Query: 80 VSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN 136
+S + G + +DTPGL N + +K+ + D++LYVDRLD D
Sbjct: 896 ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955
Query: 137 LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEAL------ 185
+ + R IT + G IWK A++ LTHA + PD L Y+VF ++ S +
Sbjct: 956 NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQ 1015
Query: 186 ----LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLV 237
L+ ++PS PV LVEN C KN KVLPNG W L+
Sbjct: 1016 AVGDLRLMNPSLMN----------PVSLVENHPLCRKNREGVKVLPNGQTWRSQLL 1061
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
+L ILV+GK GVGKS+T+NSI G+ F+ R V + +G + +DTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 98 ---IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
N + IKR++ + DV+LY+DRLD+ + D + + IT+ FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
++V+TH+ + R ++YE + +R + + ++ + K + PV+LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C KN E VLPNG W P +
Sbjct: 341 ENHPSCKKNLAGEYVLPNGVVWKPQFM 367
|
GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 15 QQFPPA--TQTKLLELLGKLKQENVNT---LTILVMGKGGVGKSSTVNSIIGEKAVTVST 69
Q+ PP +Q +LEL G L+++ T L +++MGK G GKS+T NSI+G
Sbjct: 11 QENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGR-----DV 65
Query: 70 FQSE-GPRPVM-----VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDV 122
F+S+ RPV SR AG L ++DTP ++ A + + +L+
Sbjct: 66 FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSAPGPHA 125
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165
+L V +L R + D+Q+ R + + FG + ++V T +
Sbjct: 126 VLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166
|
Homo sapiens (taxid: 9606) |
| >sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDT 94
L ++++G+ G GKS+T NSI+G+K G PV + SR AG+ + +VDT
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDT 59
Query: 95 PGLI--EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
P + E + ++ + F+L+ LL V +L + + D Q A+ FG+
Sbjct: 60 PDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGK 117
Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCS 179
Q+ R ++V T + D L V C+
Sbjct: 118 QVMARTVVVFTRQEDLAGDSLQDYVHCT 145
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| 225463249 | 310 | PREDICTED: translocase of chloroplast 34 | 0.990 | 0.987 | 0.771 | 1e-137 | |
| 147833616 | 310 | hypothetical protein VITISV_028305 [Viti | 0.990 | 0.987 | 0.771 | 1e-137 | |
| 297810595 | 313 | ATTOC34/OEP34 [Arabidopsis lyrata subsp. | 0.987 | 0.974 | 0.693 | 1e-127 | |
| 307136094 | 312 | chloroplast outer envelope protein 34 [C | 0.970 | 0.961 | 0.73 | 1e-127 | |
| 449526463 | 312 | PREDICTED: translocase of chloroplast 34 | 0.970 | 0.961 | 0.723 | 1e-126 | |
| 225454878 | 308 | PREDICTED: translocase of chloroplast 34 | 0.990 | 0.993 | 0.716 | 1e-125 | |
| 15238381 | 313 | translocase of chloroplast 34 [Arabidops | 0.987 | 0.974 | 0.693 | 1e-125 | |
| 449456809 | 312 | PREDICTED: translocase of chloroplast 34 | 0.970 | 0.961 | 0.72 | 1e-125 | |
| 1151244 | 313 | GTP-binding protein [Arabidopsis thalian | 0.987 | 0.974 | 0.690 | 1e-124 | |
| 21594231 | 313 | GTP-binding protein [Arabidopsis thalian | 0.987 | 0.974 | 0.687 | 1e-124 |
| >gi|225463249|ref|XP_002274573.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|296083376|emb|CBI23265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 272/307 (88%), Gaps = 1/307 (0%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MASQ+IREW GIQQFPP TQTKL+ELLGKLKQENV+TLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1 MASQLIREWTGIQQFPPVTQTKLIELLGKLKQENVSTLTILVMGKGGVGKSSTVNSIIGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN A+++IKRFLLNKTIDV
Sbjct: 61 RAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVNDQALEIIKRFLLNKTIDV 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHAQLS PD L+YE F SKRS
Sbjct: 121 LLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHAQLSPPDGLNYEDFFSKRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
EAL+K V ++K+DIQ S +PVVLVENSGRC KNE+DEK+LPNGTAWIPNLVKTIT+
Sbjct: 181 EALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEKILPNGTAWIPNLVKTITD 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
V NGSK +LVDKKL+EGPNPNE+GK+LIPFI AFQYFFI+K + RAIKSD AKE K W
Sbjct: 241 AVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVKRIQRAIKSDMAKERKAPW 300
Query: 303 -ARASRR 308
+R + R
Sbjct: 301 ESREANR 307
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833616|emb|CAN63847.1| hypothetical protein VITISV_028305 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 272/307 (88%), Gaps = 1/307 (0%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MASQ+IREW GIQQFPP TQTKL+ELLGKLKQENV+TLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1 MASQLIREWTGIQQFPPITQTKLIELLGKLKQENVSTLTILVMGKGGVGKSSTVNSIIGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN A+++IKRFLLNKTIDV
Sbjct: 61 RAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVNDQALEIIKRFLLNKTIDV 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHAQLS PD L+YE F SKRS
Sbjct: 121 LLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHAQLSPPDGLNYEDFFSKRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
EAL+K V ++K+DIQ S +PVVLVENSGRC KNE+DEK+LPNGTAWIPNLVKTIT+
Sbjct: 181 EALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEKILPNGTAWIPNLVKTITD 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
V NGSK +LVDKKL+EGPNPNE+GK+LIPFI AFQYFFI+K + RAIKSD AKE K W
Sbjct: 241 AVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVKRIQRAIKSDMAKERKAPW 300
Query: 303 -ARASRR 308
+R + R
Sbjct: 301 ESREANR 307
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810595|ref|XP_002873181.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata] gi|297319018|gb|EFH49440.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/310 (69%), Positives = 261/310 (84%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTPREWIGIQQFPPATQSKLLEILGKFKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSRSR+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRSRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F S+RS+
Sbjct: 123 LYVDRLDVYRVDDLDRQVVSAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNSFVSRRSD 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QGS P++LVENSGRC KN++DEK+LP+GT+WIPNL+ TITE+
Sbjct: 183 ALLKVIRTGAQLKKQDLQGSSTPIILVENSGRCHKNDSDEKILPDGTSWIPNLLNTITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPN++GK LIP IFAFQY ++KPL+RAIKSD +E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNQRGKRLIPLIFAFQYLLVMKPLVRAIKSDVTRESKPAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136094|gb|ADN33942.1| chloroplast outer envelope protein 34 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/300 (73%), Positives = 257/300 (85%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MASQVIREW+GI F ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1 MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+ V+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N A+++IKRFLLNKTID+
Sbjct: 61 RVVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLD YRVDNL+KQ+ +AITD+FG+ IW RALIVLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITDSFGKAIWSRALIVLTHAQFSPPDGLPYDEFVSRRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
EAL+K V +K +IQG +PVVLVENSGRC+KNE DEKVLPNG AWIP+LV+TIT
Sbjct: 181 EALVKTVRFGASFRKVEIQGLNIPVVLVENSGRCSKNEKDEKVLPNGIAWIPHLVETITT 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
VVL GSK++ VDK L+EGPNPN++GK+LIP IFA QYFF++KP+ RAI+ D A++ +P W
Sbjct: 241 VVLKGSKSIFVDKTLIEGPNPNQRGKLLIPLIFALQYFFVVKPIKRAIRRDIARQIRPSW 300
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526463|ref|XP_004170233.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/300 (72%), Positives = 258/300 (86%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MASQVIREW+GI F ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1 MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N A+++IKRFLLNKTID+
Sbjct: 61 RAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHAQFSPPDGLPYDEFVSRRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
ALL+ V + D Q +PVVLVENSGRC+KNE DEKVLPNG AWIP+LV+TIT+
Sbjct: 181 AALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEKVLPNGIAWIPHLVETITK 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
VVLNGSK++ VDKKL+EGPNPN++GK+LIPFIFA QY F++KP+ RAI+SD +++P W
Sbjct: 241 VVLNGSKSIFVDKKLIEGPNPNQRGKMLIPFIFALQYLFVVKPIKRAIRSDILTQSRPSW 300
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454878|ref|XP_002278775.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|297737377|emb|CBI26578.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/307 (71%), Positives = 261/307 (85%), Gaps = 1/307 (0%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MA Q+IREW GIQQFP AT+TKL+ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSI+GE
Sbjct: 1 MAYQLIREWTGIQQFPLATRTKLIELLGKLKQENVNTLTILVMGKGGVGKSSTVNSILGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+AVTV+ FQSEGPRPVMVSRS+AGFTLNI+DTPGL+EGGYVN A+++IKRFLL+KTIDV
Sbjct: 61 RAVTVNAFQSEGPRPVMVSRSQAGFTLNIIDTPGLVEGGYVNDQAVEIIKRFLLDKTIDV 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLDVYR DNLDKQ+ +AITD+FG+QIW+R ++VLTH QLS PD L+YE F S+RS
Sbjct: 121 LLYVDRLDVYRTDNLDKQVVKAITDSFGKQIWRRGVVVLTHGQLSPPDGLNYEDFFSRRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
EAL++ V ++K+D+Q +PV+ VENSGRC KNE+DEK+LPNGTAWIPNLVKTI +
Sbjct: 181 EALMRVVRLGAGIRKQDLQDFAIPVIPVENSGRCNKNESDEKILPNGTAWIPNLVKTIID 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
+V NGSKA+LVDKKL+EGPNPN++GK LIP I AFQY ++K + R IK D KE K W
Sbjct: 241 LVSNGSKAILVDKKLIEGPNPNKRGKFLIPLIVAFQY-LVVKQIQRTIKDDVKKEPKAPW 299
Query: 303 ARASRRL 309
S L
Sbjct: 300 ELRSANL 306
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238381|ref|NP_196119.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|30680751|ref|NP_850768.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|42573271|ref|NP_974732.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|166897637|sp|Q38906.2|TOC34_ARATH RecName: Full=Translocase of chloroplast 34, chloroplastic; Short=AtToc34; AltName: Full=34 kDa chloroplast outer envelope protein; AltName: Full=GTP-binding protein OEP34; AltName: Full=Plastid protein import 3 gi|10178039|dbj|BAB11522.1| GTP-binding protein [Arabidopsis thaliana] gi|110738722|dbj|BAF01285.1| GTP-binding protein [Arabidopsis thaliana] gi|199589346|gb|ACH90464.1| At5g05000 [Arabidopsis thaliana] gi|332003431|gb|AED90814.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|332003432|gb|AED90815.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|332003433|gb|AED90816.1| translocase of chloroplast 34 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/310 (69%), Positives = 259/310 (83%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456809|ref|XP_004146141.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/300 (72%), Positives = 256/300 (85%)
Query: 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62
MASQVIREW+GI F ATQ KLLEL+GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE
Sbjct: 1 MASQVIREWVGINNFAMATQAKLLELMGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 60
Query: 63 KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122
+AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N A+++IKRFLLNKTID+
Sbjct: 61 RAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYINDQALEIIKRFLLNKTIDI 120
Query: 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182
LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHAQ S PD L Y+ F S+RS
Sbjct: 121 LLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHAQFSPPDGLPYDEFVSRRS 180
Query: 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242
ALL+ V + D Q +PVVLVENSGRC+KNE DEKVLPNG AWIP LV+TIT+
Sbjct: 181 AALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEKVLPNGIAWIPYLVETITK 240
Query: 243 VVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
VVLNGSK++ VDKKL+EGPNPN++GK+LIPFIF QY F++KP+ RAI+SD +++P W
Sbjct: 241 VVLNGSKSIFVDKKLIEGPNPNQRGKMLIPFIFVLQYLFVVKPIKRAIRSDILTQSRPSW 300
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1151244|gb|AAD09203.1| GTP-binding protein [Arabidopsis thaliana] gi|11557975|emb|CAC17699.1| atToc34 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/310 (69%), Positives = 258/310 (83%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+K W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKLAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21594231|gb|AAM65983.1| GTP-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/310 (68%), Positives = 258/310 (83%), Gaps = 5/310 (1%)
Query: 4 ASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+KLLE+LGK K+E+V++LT+LV+GK GVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVIGKSGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW- 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWE 302
Query: 303 ----ARASRR 308
ASRR
Sbjct: 303 LRDSGLASRR 312
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| TAIR|locus:2175259 | 313 | TOC34 "translocon at the outer | 0.967 | 0.955 | 0.678 | 1.6e-109 | |
| UNIPROTKB|Q41009 | 310 | TOC34 "Translocase of chloropl | 0.974 | 0.970 | 0.655 | 2.5e-104 | |
| TAIR|locus:2204923 | 297 | TOC33 "translocon at the outer | 0.951 | 0.989 | 0.586 | 1.5e-90 | |
| TAIR|locus:2089348 | 1089 | TOC120 "translocon outer compl | 0.666 | 0.189 | 0.342 | 2.7e-26 | |
| TAIR|locus:2059929 | 1206 | TOC132 "multimeric translocon | 0.669 | 0.171 | 0.343 | 6e-25 | |
| TAIR|locus:2132298 | 1503 | TOC159 "translocon at the oute | 0.708 | 0.145 | 0.333 | 6.4e-25 | |
| DICTYBASE|DDB_G0275441 | 449 | gtpA "GTP-binding protein, HSR | 0.663 | 0.456 | 0.328 | 1.6e-23 | |
| TAIR|locus:2149204 | 793 | Toc90 "translocon at the outer | 0.676 | 0.263 | 0.322 | 1.1e-22 | |
| UNIPROTKB|F1NUA9 | 220 | LOC429682 "Uncharacterized pro | 0.443 | 0.622 | 0.286 | 8.2e-07 | |
| UNIPROTKB|F1NUB0 | 229 | LOC429682 "Uncharacterized pro | 0.443 | 0.598 | 0.286 | 1e-06 |
| TAIR|locus:2175259 TOC34 "translocon at the outer envelope membrane of chloroplasts 34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 203/299 (67%), Positives = 246/299 (82%)
Query: 4 ASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
A Q +REW+GIQQFPPATQ+ +E+V++LT+LVMGKGGVGKSSTVNS+IGEK
Sbjct: 3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEK 62
Query: 64 AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123
A VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN AI +IKRFLLN TIDVL
Sbjct: 63 AAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVL 122
Query: 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183
LYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHAQ S PD L+Y F SKRS
Sbjct: 123 LYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSN 182
Query: 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243
ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK+LP GT+WIPNL ITE+
Sbjct: 183 ALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEI 242
Query: 244 VLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302
NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++KPL+RAIKSD ++E+KP W
Sbjct: 243 SFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAW 301
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| UNIPROTKB|Q41009 TOC34 "Translocase of chloroplast 34" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
|---|
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 198/302 (65%), Positives = 237/302 (78%)
Query: 1 MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +REW GI F PATQT QE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240
RSEALL+ V +KK D Q S +PVVL+ENSGRC KN++DEKVLPNG AWIP+LV+TI
Sbjct: 181 RSEALLQVVRSGASLKK-DAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239
Query: 241 TEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP 300
TEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ KP+ I+ D A E KP
Sbjct: 240 TEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299
Query: 301 VW 302
W
Sbjct: 300 AW 301
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| TAIR|locus:2204923 TOC33 "translocon at the outer envelope membrane of chloroplasts 33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 173/295 (58%), Positives = 222/295 (75%)
Query: 7 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246
K + + M+K++ + S + VV ENSGRC+KN+ DEK LPNG AWIPNLVK IT+V N
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 243
Query: 247 GSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV 301
KA+ VDKK+V+G ++KGK LIP I QY I+K + AI++D KP+
Sbjct: 244 QRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYL-IVKMIQGAIRNDIKTSGKPL 297
|
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| TAIR|locus:2089348 TOC120 "translocon outer complex protein 120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 76/222 (34%), Positives = 120/222 (54%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIE 99
TI+V+GK GVGKS+T+NSI E ++ FQ G + V + G + ++DTPGL+
Sbjct: 458 TIMVLGKSGVGKSATINSIFDELKISTDAFQV-GTKKVQDIEGFVQGIKVRVIDTPGLLP 516
Query: 100 GG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156
+ N ++ ++ F+ D++LY+DRLD+ D+ D + R ITD FG IW
Sbjct: 517 SWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFN 576
Query: 157 ALIVLTHAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVE 211
A++ LTHA + PD Y++F ++RS + + + + D++ PV LVE
Sbjct: 577 AIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVE 631
Query: 212 NSGRCAKNENDEKVLPNGTAWIPNLVK-TITEVVLNGSKALL 252
N C N ++VLPNG W P+L+ + +L + ALL
Sbjct: 632 NHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALL 673
|
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| TAIR|locus:2059929 TOC132 "multimeric translocon complex in the outer envelope membrane 132" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 6.0e-25, P = 6.0e-25
Identities = 76/221 (34%), Positives = 113/221 (51%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
TI+V+GK GVGKS+T+NSI E FQ R V G + ++DTPGL+
Sbjct: 576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPS 635
Query: 101 GY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157
N + +K F+ D++LY+DRLD+ D+ D + R I+D FG IW A
Sbjct: 636 WSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNA 695
Query: 158 LIVLTHAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212
++ LTHA PD Y++F ++RS + + + + D++ PV LVEN
Sbjct: 696 IVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVEN 750
Query: 213 SGRCAKNENDEKVLPNGTAWIPNLVK-TITEVVLNGSKALL 252
C N ++VLPNG W P+L+ + +L + ALL
Sbjct: 751 HSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALL 791
|
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| TAIR|locus:2132298 TOC159 "translocon at the outer envelope membrane of chloroplasts 159" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 6.4e-25, P = 6.4e-25
Identities = 76/228 (33%), Positives = 115/228 (50%)
Query: 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93
+E + +L ILV+GK GVGKS+T+NSI+G + ++ F +S + G + +D
Sbjct: 850 EELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFID 909
Query: 94 TPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150
TPGL N + +K+ + D++LYVDRLD D + + R IT + G
Sbjct: 910 TPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLG 969
Query: 151 EQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFV 205
IWK A++ LTHA + PD L Y+VF ++ S + + + + +
Sbjct: 970 TSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMN 1029
Query: 206 PVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV-VLNGSKALL 252
PV LVEN C KN KVLPNG W L+ + VL+ + +LL
Sbjct: 1030 PVSLVENHPLCRKNREGVKVLPNGQTWRSQLLLLCYSLKVLSETNSLL 1077
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| DICTYBASE|DDB_G0275441 gtpA "GTP-binding protein, HSR1-related domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 73/222 (32%), Positives = 117/222 (52%)
Query: 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
N +L++G+ GVGKSST+N++ G + V + +S P SR GF LNI+DTPG
Sbjct: 150 NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGF 208
Query: 98 IE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
++ G V+ + + I+R+L KTI +L+V++ R D + + T+ G Q+W+
Sbjct: 209 LDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWR 268
Query: 156 RALIVLTHAQLSLPDRLDYEVF--------CSKRSEA----LLKFVSPS-TWMKKKDIQG 202
A +VLT+A LPD Y+ F K EA KF + + + D
Sbjct: 269 NAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPP 327
Query: 203 SFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244
+PV +ENS RC +NE ++VL +GT + L+ + ++V
Sbjct: 328 KHIPVYAMENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369
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| TAIR|locus:2149204 Toc90 "translocon at the outer envelope membrane of chloroplasts 90" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 72/223 (32%), Positives = 114/223 (51%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL- 97
+L ILV+GK GVGKS+T+NSI G+ F+ R V + +G + +DTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 98 -IEGGYV--NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154
+ N + IKR++ + DV+LY+DRLD+ + D + + IT+ FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 155 KRALIVLTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
++V+TH+ + R ++YE + +R + + ++ + K + PV+LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLEN-----PVLLV 340
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV-KTITEVVLNGSKALL 252
EN C KN E VLPNG W P + + VL ++LL
Sbjct: 341 ENHPSCKKNLAGEYVLPNGVVWKPQFMFLCVCTKVLGDVQSLL 383
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| UNIPROTKB|F1NUA9 LOC429682 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 41/143 (28%), Positives = 72/143 (50%)
Query: 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
Q + L+I+++GK G GKS+T N+I+G+KA ++ T QS AG + +V
Sbjct: 3 QREGSKLSIILVGKTGSGKSATGNTILGKKAFLSTLTAQSLTREYEKAEDCFAGRPIEVV 62
Query: 93 DTPGLIEGGYVNYHAIQLIKRFL--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150
DTPGL + N + IK L + ++ V +L R+ ++++ +T F
Sbjct: 63 DTPGLFDTREANEKTAEKIKNAFQYLYAGVHAIILVMQLG--RISQEEQEVAEWVTKIFN 120
Query: 151 EQIWKRALIVLTHAQ-LSLPDRL 172
+ K +++ T A+ L P+ L
Sbjct: 121 TKAEKYTILLFTRAEELEHPEAL 143
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| UNIPROTKB|F1NUB0 LOC429682 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 41/143 (28%), Positives = 72/143 (50%)
Query: 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
Q + L+I+++GK G GKS+T N+I+G+KA ++ T QS AG + +V
Sbjct: 12 QSKGSKLSIILVGKTGSGKSATGNTILGKKAFLSTLTAQSLTREYEKAEDCFAGRPIEVV 71
Query: 93 DTPGLIEGGYVNYHAIQLIKRFL--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150
DTPGL + N + IK L + ++ V +L R+ ++++ +T F
Sbjct: 72 DTPGLFDTREANEKTAEKIKNAFQYLYAGVHAIILVMQLG--RISQEEQEVAEWVTKIFN 129
Query: 151 EQIWKRALIVLTHAQ-LSLPDRL 172
+ K +++ T A+ L P+ L
Sbjct: 130 TKAEKYTILLFTRAEELEHPEAL 152
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41009 | TOC34_PEA | 3, ., 6, ., 5, ., - | 0.6854 | 0.9741 | 0.9709 | N/A | no |
| Q38906 | TOC34_ARATH | 3, ., 6, ., 5, ., - | 0.6935 | 0.9870 | 0.9744 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.5 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00003602001 | SubName- Full=Chromosome undetermined scaffold_146, whole genome shotgun sequence; (310 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00023971001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1007 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 309 | |||
| TIGR00991 | 313 | TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch | 0.0 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 1e-123 | |
| pfam04548 | 211 | pfam04548, AIG1, AIG1 family | 2e-44 | |
| TIGR00993 | 763 | TIGR00993, 3a0901s04IAP86, chloroplast protein imp | 7e-35 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 4e-13 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-11 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 1e-10 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 5e-09 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-04 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 3e-04 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 0.002 | |
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 0.003 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 0.003 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 0.004 |
| >gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Score = 504 bits (1300), Expect = 0.0
Identities = 209/301 (69%), Positives = 248/301 (82%), Gaps = 1/301 (0%)
Query: 3 MAS-QVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61
MAS Q REW+GIQQFPPATQTKLLELLGKLK+E+V++LTILVMGKGGVGKSSTVNSIIG
Sbjct: 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIG 60
Query: 62 EKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121
E+ TVS FQSEG RP+MVSR+RAGFTLNI+DTPGLIEGGY+N A+ +IKRFLL KTID
Sbjct: 61 ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID 120
Query: 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181
VLLYVDRLD YRVD LD Q+ RAITD+FG+ IW+++L+VLTHAQ S PD L+Y F SKR
Sbjct: 121 VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKR 180
Query: 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT 241
SEALL+ + +KK+D Q +PV LVENSGRC KNE+DEK+LP+GT WIP L+K IT
Sbjct: 181 SEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEIT 240
Query: 242 EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV 301
EV+ NGSK + VDKKL++GPNPN +GK+ IP IFA QY ++KP+ RAI +D A E K
Sbjct: 241 EVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVKPIRRAIHADIANEKKDA 300
Query: 302 W 302
W
Sbjct: 301 W 301
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[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-123
Identities = 138/248 (55%), Positives = 164/248 (66%), Gaps = 2/248 (0%)
Query: 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS 68
REW+G Q FP ATQTKL EL KLK+E +LTILV+GK GVGKSST+NSI GE+ V+VS
Sbjct: 1 REWVGFQFFPDATQTKLHELEAKLKKELDFSLTILVLGKTGVGKSSTINSIFGERKVSVS 60
Query: 69 TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG--GYVNYHAIQLIKRFLLNKTIDVLLYV 126
FQSE RP VSR+ GF LNI+DTPGL+E VN + +IKRFL KTIDV+LYV
Sbjct: 61 AFQSETLRPREVSRTVDGFKLNIIDTPGLLESQDQRVNRKILSIIKRFLKKKTIDVVLYV 120
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLD+YRVDNLD + RAITD+FG IW+ A++VLTHAQ S PD + F R A
Sbjct: 121 DRLDMYRVDNLDVPLLRAITDSFGPSIWRNAIVVLTHAQSSPPDGPNGTPFSYDRFVAQR 180
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246
K + + PVVLVENS RC KN EKVLPNGT W+P L+ T V L
Sbjct: 181 KHIVQQAIQQAAGDPDLENPVVLVENSPRCKKNRQGEKVLPNGTVWLPQLLLLCTSVKLL 240
Query: 247 GSKALLVD 254
+L+D
Sbjct: 241 SEANILLD 248
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The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|218141 pfam04548, AIG1, AIG1 family | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-44
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG------PRPVMVSRSRAGFTLNIVD 93
L I+++GK G GKS+T NSI+G KA F+S+ +VSR+ G +N++D
Sbjct: 1 LRIVLVGKTGNGKSATGNSILGRKA-----FESKLRAQGVTKTCQLVSRTWDGRIINVID 55
Query: 94 TPGLIEGGYVNYHAIQLIKR-FLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
TPGL + N + I R LL + +L V L + R ++Q R + + FG
Sbjct: 56 TPGLFDLSVSNDFISKEIIRCLLLAEPGPHAVLLV--LSLGRFTEEEEQALRTLQELFGS 113
Query: 152 QIWKRALIVLTHAQLSLPDRLDYEVFCSKRS-EALLKFVSP------------STWMKKK 198
+I ++V T L D + + S E L + + K++
Sbjct: 114 KILDYMIVVFTRKD-DLEDD-SLDDYLSDGCPEFLKEVLRECGGRYVLFNNKADGEEKEE 171
Query: 199 DIQG--SFVPVVLVENSGRCAKNENDEKVLPNGTAWIP 234
+Q + V ++ EN G+ N+ EK+ G
Sbjct: 172 QVQQLLALVEAIVKENGGKPYTNDLYEKIKEEGERLRE 209
|
Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211 |
| >gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-35
Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98
+L ILV+GK GVGKS+T+NSI GE + F + G + ++DTPGL
Sbjct: 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLK 177
Query: 99 EGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 155
N + +K+F+ D++LYVDRLD+ D+ D + R ITD G IW
Sbjct: 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWF 237
Query: 156 RALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLV 210
A++ LTHA + PD L Y+VF ++RS + + + + + PV LV
Sbjct: 238 NAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLV 297
Query: 211 ENSGRCAKNENDEKVLPNGTAWIPNLV 237
EN C KN +KVLPNG W P+L+
Sbjct: 298 ENHPACRKNRAGQKVLPNGQVWKPHLL 324
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-13
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPV-----MVSRSRAGFTLNIVD 93
L ++++GK G GKS+T N+I+G K F+S+ V S G +N++D
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKV-----FESKLSASGVTKTCQKESAVWDGRRVNVID 55
Query: 94 TPGLIEGGYVN-YHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 151
TPGL + + ++I+ L+ L V L + + ++Q + + FGE
Sbjct: 56 TPGLFDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLGRFTEE--EEQAVEELQELFGE 113
Query: 152 QIWKRALIVLTHA 164
++ +++ T
Sbjct: 114 KVLDHTIVLFTRG 126
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 43 LVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
+V+G+GGVGKSS +N+++G + VS + P + + L +VDTPGL E
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160
G +L + L + D++L V ++ I ++ ++V
Sbjct: 61 GG--LGREELARLLL--RGADLILLVVDSTDRES---EEDAKLLILRRLRKE-GIPIILV 112
Query: 161 LTHAQLSLPDRLDYEVFCSKRSE 183
L ++ + + ++
Sbjct: 113 GNKIDLLEEREVEELLRLEELAK 135
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 16/190 (8%)
Query: 13 GIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS 72
G+ P ++LE L L+ + +L+MG G GKSS +N++ + VS
Sbjct: 13 GLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV 72
Query: 73 EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY 132
+ S G L + DTPGL +G + QL + L K VL + D
Sbjct: 73 GTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD-YLPKLDLVLWLIKADD-- 129
Query: 133 RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-LDY---------EVFCSKRS 182
R D+ R + + KR L V+T A + P R D + F +++
Sbjct: 130 RALGTDEDFLRDVI---ILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186
Query: 183 EALLKFVSPS 192
EAL +
Sbjct: 187 EALGRLFQEV 196
|
Length = 296 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---RPVMVSRSRAGFTLNIVDTPGL 97
+ ++G+ VGKS+ +N++ G K VS + P R ++ G + +VDTPGL
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDY----PGTTRDPILGVLGLGRQIILVDTPGL 56
Query: 98 IEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156
IEG ++ RFL + D++L V +D + I + + K
Sbjct: 57 IEGASEG-KGVEGFNRFLEAIREADLILLV--VD---ASEGLTEDDEEILEELEKLPKKP 110
Query: 157 ALIVLT 162
++VL
Sbjct: 111 IILVLN 116
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVS----TFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97
I+++G VGKS+ +N ++G K T ++ + + N++DT G
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKT--YKFNLLDTAGQ 61
Query: 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL---DKQITRAITDNFG 150
+ + + ++ L + D+++ V ++ + L K+I
Sbjct: 62 EDYDAIRRLYYRAVESSL--RVFDIVILVLDVE----EILEKQTKEIIHHAESGVP 111
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGLIEGGY 102
+ G+ VGKSS +N+++G+ VS PV + ++DTPGL E G
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGG 61
Query: 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162
+ ++ ++ D++L V D+ V+ + ++ K L+VL
Sbjct: 62 LGRERVEEARQVA--DRADLVLLVVDSDLTPVE-EEAKLGLLRERG------KPVLLVLN 112
Query: 163 HAQL 166
L
Sbjct: 113 KIDL 116
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 18 PPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP 77
+ K KLK + + + V+G VGKSS +N+++ + + V +
Sbjct: 70 QGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQ 129
Query: 78 VMVSRSRAGFTLNIVDTPGL 97
V + + + DTPG+
Sbjct: 130 QDV---KLDKEIYLYDTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.002
Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 23/195 (11%)
Query: 36 NVNTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93
+ I+V+G GGVGK++ +N ++G++ T + P + R L + D
Sbjct: 2 FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWD 60
Query: 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153
T G E + ++ +L+ D D L ++ + + + +
Sbjct: 61 TAGQEE--------YRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV 112
Query: 154 WKRALIVLTHAQLSLPDRLD--YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVE 211
I+L ++ L D E+ E +L ++P K + P L+E
Sbjct: 113 ----PILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP-----KAVLPEVANP-ALLE 162
Query: 212 NSGRCAKNENDEKVL 226
S + N ++
Sbjct: 163 TSAKSLTGPNVNELF 177
|
Length = 219 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSI---IGEKAVTVSTFQSEG--- 74
T +K + L +L + N +++ G+ GVGKSS +N++ + ++ +S+ G
Sbjct: 103 TSSKNQDGLKELIEALQNRISVF-AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHT 161
Query: 75 PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114
V + G I DTPG E G + QL + F
Sbjct: 162 TTHVELFHFHGGL---IADTPGFNEFGLWHLEPEQLTQGF 198
|
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---PRPVMVSRSRA-----GFT-- 88
I+V+G+ G+GKS+ +N++ G K + G + V + S+A G
Sbjct: 4 QFNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLK 63
Query: 89 LNIVDTPGLIEGGYVN 104
L ++DTPG G +N
Sbjct: 64 LTVIDTPGF--GDNIN 77
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 27/94 (28%)
Query: 18 PPATQTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP 75
A + E + +LK++ + + V+G VGKS+ +N ++G+K S
Sbjct: 109 RKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS------- 161
Query: 76 RPVMVSRSRAGFTLNI-----------VDTPGLI 98
+R G T I +DTPG+I
Sbjct: 162 -------NRPGTTKGIQWIKLDDGIYLLDTPGII 188
|
Length = 322 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 100.0 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 100.0 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 100.0 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.95 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.95 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.94 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.94 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.91 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.9 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.9 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.89 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.88 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.88 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.86 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.85 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.84 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.83 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.81 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.8 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.8 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.77 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.76 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.76 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.76 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.75 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.75 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.74 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.73 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.73 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.73 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.72 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.72 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.72 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.71 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.71 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.71 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.7 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.7 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.69 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.69 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.69 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.69 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.69 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.69 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.68 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.68 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.68 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.68 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.67 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.67 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.67 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.67 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.67 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.67 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.67 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.66 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.66 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.66 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.66 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.66 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.66 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.65 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.65 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.65 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.65 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.65 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.65 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.65 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.65 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.65 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.64 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.64 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.64 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.64 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.64 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.64 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.64 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.64 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.64 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.63 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.63 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.63 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.63 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.63 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.63 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.63 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.63 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.63 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.62 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.62 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.62 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.62 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.62 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.62 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.62 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.62 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.61 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.61 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.61 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.61 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.61 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.61 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.61 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.61 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.61 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.61 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.6 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.6 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.6 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.6 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.6 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.59 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.59 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.59 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.59 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.59 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.59 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.59 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.59 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.59 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.58 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.58 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.58 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.58 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.58 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.58 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.58 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.58 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.58 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.58 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.58 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.58 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.57 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.57 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.57 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.57 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.57 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.57 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.56 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.56 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.56 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.56 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.56 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.56 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.56 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.55 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.55 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.55 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.55 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.55 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.55 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.55 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.55 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.55 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.55 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.54 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.54 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.54 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.53 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.53 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.53 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.53 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.53 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.53 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.52 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.52 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.52 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.52 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.51 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.5 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.5 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.5 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.5 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.5 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.49 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.49 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.49 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.49 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.48 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.48 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.48 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.48 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.47 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.47 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.47 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.46 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.45 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.45 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.44 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.44 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.44 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.43 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.42 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.42 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.42 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.42 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.42 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.42 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.42 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.41 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.41 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.41 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.4 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.4 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.39 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.39 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.39 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.39 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.38 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.38 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.37 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.36 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.36 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.36 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.35 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.35 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.35 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.35 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.34 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.34 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.34 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.33 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.33 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.33 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.33 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.31 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.3 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.3 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.3 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.3 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.29 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.29 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.28 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.27 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.27 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.26 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.26 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.26 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.26 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.25 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.25 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.23 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.23 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.23 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.22 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.2 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.19 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.19 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.18 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.18 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.16 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.16 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.15 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.14 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.14 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.14 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.12 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.12 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.12 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.12 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.12 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.11 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.11 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.1 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.1 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.09 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.08 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.07 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.07 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.06 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.04 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.04 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.0 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.98 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.98 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 98.98 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.96 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.96 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 98.95 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.94 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.94 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 98.93 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.92 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.91 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.91 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 98.91 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.9 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.9 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.89 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.88 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.88 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.87 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.86 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.86 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.82 | |
| PRK13768 | 253 | GTPase; Provisional | 98.82 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.82 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.81 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.78 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.78 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 98.76 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.73 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.73 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.72 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.68 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.68 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.67 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.67 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.65 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.64 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.6 | |
| PTZ00099 | 176 | rab6; Provisional | 98.59 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.58 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.58 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.58 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.58 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.57 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.57 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.56 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.55 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.54 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.54 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.52 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.51 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.5 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 98.49 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.48 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.45 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.44 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.44 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.44 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.42 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.41 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.41 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.4 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.37 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.37 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.35 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 98.35 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.35 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.33 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.31 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.28 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.27 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.27 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.27 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.26 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.22 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.18 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.16 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.16 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 98.13 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.13 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.11 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.07 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.99 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 97.99 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 97.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 97.94 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.93 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.9 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.87 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.87 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.82 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 97.82 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 97.81 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 97.81 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 97.79 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 97.75 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.74 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.72 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.64 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 97.62 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 97.61 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.59 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 97.58 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.56 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 97.45 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.42 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.4 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 97.38 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 97.31 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.28 | |
| PF02263 | 260 | GBP: Guanylate-binding protein, N-terminal domain; | 97.28 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 97.24 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 97.22 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.19 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.19 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 97.18 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.15 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.13 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.12 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.09 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.09 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.04 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.01 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.0 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.96 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.95 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 96.93 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 96.93 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 96.91 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 96.9 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.89 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 96.87 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 96.84 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.83 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.81 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 96.8 | |
| COG1341 | 398 | Predicted GTPase or GTP-binding protein [General f | 96.79 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.78 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.78 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.76 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.73 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.72 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.71 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.7 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 96.69 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.66 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.6 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.59 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 96.57 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.56 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 96.56 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.5 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.49 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.49 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 96.47 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 96.44 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 96.42 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.37 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 96.26 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.25 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 96.24 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.23 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 96.22 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.21 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.19 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 96.17 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 96.15 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.15 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.14 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.14 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.11 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.1 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 96.09 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 96.04 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 96.04 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.04 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.03 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 96.03 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 96.03 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.02 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 96.01 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 96.0 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 95.99 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 95.99 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 95.99 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 95.99 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 95.99 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 95.98 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.97 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 95.97 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 95.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 95.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 95.97 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 95.97 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 95.96 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 95.96 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 95.95 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 95.95 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 95.94 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 95.94 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 95.94 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 95.94 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 95.93 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 95.92 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 95.91 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 95.9 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 95.9 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.9 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 95.9 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 95.89 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 95.89 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 95.87 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 95.86 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 95.85 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 95.85 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 95.85 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 95.84 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 95.83 | |
| PRK06217 | 183 | hypothetical protein; Validated | 95.83 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 95.83 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 95.83 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 95.82 |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=443.94 Aligned_cols=305 Identities=69% Similarity=1.107 Sum_probs=284.9
Q ss_pred ccchh-hhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE
Q 021685 3 MASQV-IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS 81 (309)
Q Consensus 3 ~~~~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~ 81 (309)
|||+. .+||.|++++|+++|++|.+++.++++++.+.++|+++|++|+||||++|+|+|++.+.++...+++..+....
T Consensus 1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~ 80 (313)
T TIGR00991 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS 80 (313)
T ss_pred CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence 66644 49999999999999999999999999999999999999999999999999999999878888877777666666
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 82 ~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
...+|..+.||||||+.+....++++.+.++.++...++|++|||+++|..+++..|..+++.+.+.||+.+|+++|+|+
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 67789999999999999877777777777877777779999999999988789999999999999999999999999999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHH
Q 021685 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT 241 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~ 241 (309)
||+|..++++.++++|+.++++.++++|+++.+..+.+++...+|+++++|+++|.+|..++++||+.+.|++.|+++|.
T Consensus 161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~ 240 (313)
T TIGR00991 161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEIT 240 (313)
T ss_pred ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHH
Confidence 99999989999999999999999999999999888877788889999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchhhhhhc
Q 021685 242 EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASR 307 (309)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
.++.+..+++.+|++++.++.|+.+|++|+|+..++|++|++||++++|++|++++++++||.|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (313)
T TIGR00991 241 EVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVKPIRRAIHADIANEKKDAWEQRDR 306 (313)
T ss_pred HHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhHHHHHHHHHHHhhccCcchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999975
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=313.81 Aligned_cols=252 Identities=33% Similarity=0.517 Sum_probs=218.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~---~~~~~~~i~~~~ 115 (309)
.++|+|+|++|+|||||+|+|+|+..+.++...+.|..........+|..+.||||||+.+.... +++++..+.+++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 47899999999999999999999988777776566666666666678999999999999986432 335666666777
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC-----CCHHHHHHhhhHHHHHhhc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~ 190 (309)
...++|+||||++++..+.+..+..+++.|.+.||+.+|+++|||+|++|..+|++ .++++|+.++.+.+++.|+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Ir 277 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIG 277 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHH
Confidence 66789999999998755555678899999999999999999999999999988764 6899999999999999999
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHH-HHHhcCCCcceeccccccCCCCCCCCcc
Q 021685 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT-EVVLNGSKALLVDKKLVEGPNPNEKGKI 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~-~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 269 (309)
+|.+......+...+||.+|+|+++|.+|..++++||+.+.|++.|+..|. ..+.++...++..+....++.|+.+|++
T Consensus 278 q~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~ 357 (763)
T TIGR00993 278 QAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSR 357 (763)
T ss_pred HhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCccccccc
Confidence 998755443355678999999999999999999999999999999999888 8888999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhhHHHH
Q 021685 270 LIPFIFAFQYFFIIKPLIRAI 290 (309)
Q Consensus 270 ~~~l~~~~q~~~~~~~~~~~~ 290 (309)
++||+|+.|++|++||.-+.-
T Consensus 358 ~~plp~~ls~ll~~r~~~k~~ 378 (763)
T TIGR00993 358 APPLPYLLSWLLQSRAHPKLP 378 (763)
T ss_pred CCchHHHHHHHhhcCCCCCCh
Confidence 999999999999999865543
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=285.91 Aligned_cols=244 Identities=50% Similarity=0.693 Sum_probs=203.8
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~ 88 (309)
++|.|+..+|++++..+.++..++++....+++|+|+|++|+|||||+|+|+|...+.++...++|.....+....+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~ 80 (249)
T cd01853 1 REWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK 80 (249)
T ss_pred CCccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE
Confidence 47999999999999999999999999888999999999999999999999999988888888888888887778889999
Q ss_pred EEEEeCCCCCCCC---CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 89 LNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 89 l~liDTPG~~~~~---~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+.||||||+.+.. ..++++++.+.+++...++|++|||.++|..+++..|..+++.+.+.||.++|+++++|+||+|
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 9999999998763 2445666677777777789999999999988888999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..+|++.....+..++...++..+.+++...........+|+++++|++.|.+|..++++||+.+.|++.|+..|.....
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~ 240 (249)
T cd01853 161 SSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKL 240 (249)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHh
Confidence 99888775554444444444444433321111122345689999999999999999999999999999999999998887
Q ss_pred cCCCcce
Q 021685 246 NGSKALL 252 (309)
Q Consensus 246 ~~~~~~~ 252 (309)
......+
T Consensus 241 ~~~~~~~ 247 (249)
T cd01853 241 LSEANIL 247 (249)
T ss_pred ccccccc
Confidence 7655443
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-28 Score=204.31 Aligned_cols=248 Identities=18% Similarity=0.271 Sum_probs=179.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCC-CeeEEE
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEG-PRPVMV 80 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t-~~~~~~ 80 (309)
-.|+|+....++.+. ++-+.+.+ |+|+|+|.+|.||||++|+|+...+...+.. +.++ .+..++
T Consensus 24 lgyvGidtI~~Qm~~-------k~mk~GF~-FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th 95 (336)
T KOG1547|consen 24 LGYVGIDTIIEQMRK-------KTMKTGFD-FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH 95 (336)
T ss_pred cccccHHHHHHHHHH-------HHHhccCc-eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee
Confidence 468888776666443 33445654 9999999999999999999998754332211 1111 123344
Q ss_pred EeeeCCe--EEEEEeCCCCCCCC-----------CCcHHHHHHHHH--------hhhcCCCcEEEEEEeCCccccChhHH
Q 021685 81 SRSRAGF--TLNIVDTPGLIEGG-----------YVNYHAIQLIKR--------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 81 ~~~~~g~--~l~liDTPG~~~~~-----------~~~~~~~~~i~~--------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
.++.+|+ +++++|||||+|.- +.++++.+++++ .+.+.++|||||+++.+++.+.+.|.
T Consensus 96 vieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDi 175 (336)
T KOG1547|consen 96 VIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDI 175 (336)
T ss_pred eeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccH
Confidence 5556676 68999999999842 233344444433 23467899999999999999999999
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021685 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
++++.|.+. .++|.|+.|+|.. ++++. .+|++.|+++ +. ..+|.+++.+. +..
T Consensus 176 eflkrLt~v------vNvvPVIakaDtl-----TleEr-----~~FkqrI~~e--l~-----~~~i~vYPq~~----fde 228 (336)
T KOG1547|consen 176 EFLKRLTEV------VNVVPVIAKADTL-----TLEER-----SAFKQRIRKE--LE-----KHGIDVYPQDS----FDE 228 (336)
T ss_pred HHHHHHhhh------heeeeeEeecccc-----cHHHH-----HHHHHHHHHH--HH-----hcCcccccccc----ccc
Confidence 999999998 6999999999976 34443 5677777654 22 22356655432 222
Q ss_pred cCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcc
Q 021685 220 ENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEA 298 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~ 298 (309)
+..++.+ -..+.+.|++++.++.+++.++++.++||+ .+||.+.+....+|.|.++...+++.+-+|+++--
T Consensus 229 d~ed~~l------N~kvR~~iPFAVVGsd~e~~vnG~~vlGRk-trWg~IeVen~nhCeF~~LRdfliRtHlQdlke~T 300 (336)
T KOG1547|consen 229 DLEDKTL------NDKVRESIPFAVVGSDKEIQVNGRRVLGRK-TRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETT 300 (336)
T ss_pred chhHHHH------HHHHHhhCCeEEecccceEEEcCeEeeccc-cccceEEecccccchhHHHHHHHHHHHHHHHHHHh
Confidence 2222222 245567899999999999999999999999 99999999999999999977789999999998764
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=206.76 Aligned_cols=191 Identities=28% Similarity=0.402 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
++|+|+|++|+||||++|+|+|.+.+..+. ..++|..+..+...++|..+.||||||+.+....+++..+.+.+++ +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 689999999999999999999999876653 4567788888888999999999999999988887777777787765 4
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhh-HHHHHhhcccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS-EALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~ 195 (309)
.+++|++|||++++ +++..+...++.+.+.||..+|+++|||+|++|...++. ++++++... ..++++++.|..
T Consensus 81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS--LEDYLKKESNEALQELIEKCGG- 155 (212)
T ss_dssp TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT-
T ss_pred cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc--HHHHHhccCchhHhHHhhhcCC-
Confidence 67899999998877 899999999999999999999999999999999765544 899998544 679999988743
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcceec
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD 254 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~ 254 (309)
..++.++... .......++.+|++.|..++..++..+...
T Consensus 156 ----------R~~~f~n~~~---------~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~ 195 (212)
T PF04548_consen 156 ----------RYHVFNNKTK---------DKEKDESQVSELLEKIEEMVQENGGQYYSN 195 (212)
T ss_dssp ----------CEEECCTTHH---------HHHHHHHHHHHHHHHHHHHHHHTTTT--B-
T ss_pred ----------EEEEEecccc---------chhhhHHHHHHHHHHHHHHHHHcCCCCCCh
Confidence 2233322100 000112458999999999998886554433
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-28 Score=225.00 Aligned_cols=239 Identities=22% Similarity=0.311 Sum_probs=167.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
.++.|+.+|.+++.+.+. .-+.....+ .++++|+++|+||+|||||+|+|+|++...+++.+++|++++...++++|+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~ 226 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR 226 (444)
T ss_pred hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe
Confidence 456777766666444331 111111222 257999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCcH--HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 88 TLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~--~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
++.++||+|+.......+ +.++..+..-....+|+|++|++... .++++|.+++..+.+.. +++++|+||||
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g-----~~~vIvvNKWD 300 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAG-----RGIVIVVNKWD 300 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcC-----CCeEEEEEccc
Confidence 999999999987666554 33444444444578999999955543 58999999999988763 79999999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHH----HHH
Q 021685 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVK----TIT 241 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~----~i~ 241 (309)
+.+.++.+.+++. +.++..+.. ....|++++|+. ++.+.+++++. +....+ ++.
T Consensus 301 l~~~~~~~~~~~k----~~i~~~l~~----------l~~a~i~~iSA~----~~~~i~~l~~~----i~~~~~~~~~ri~ 358 (444)
T COG1160 301 LVEEDEATMEEFK----KKLRRKLPF----------LDFAPIVFISAL----TGQGLDKLFEA----IKEIYECATRRIS 358 (444)
T ss_pred cCCchhhHHHHHH----HHHHHHhcc----------ccCCeEEEEEec----CCCChHHHHHH----HHHHHHHhccccC
Confidence 9866544444443 334443332 234899999885 44442222221 111111 233
Q ss_pred HHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHH
Q 021685 242 EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFF 281 (309)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~ 281 (309)
+...+. +++.+...++||...|+++ +++|++|..-
T Consensus 359 Ts~LN~----~l~~a~~~~pP~~~~G~r~-ki~Ya~q~~~ 393 (444)
T COG1160 359 TSLLNR----VLEDAVAKHPPPVRYGRRL-KIKYATQVST 393 (444)
T ss_pred HHHHHH----HHHHHHHhCCCCccCCceE-EEEEEecCCC
Confidence 333333 6777888888888889996 9999999864
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=192.32 Aligned_cols=184 Identities=22% Similarity=0.306 Sum_probs=142.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
++|+++|++|+|||||+|+|+|.+.+..+. .+++|..+......++|..+.||||||+.+.....+.....+.+++ .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 589999999999999999999998765553 4567888888788889999999999999987654444444554443 3
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.+++|++|||++++ +++..|..+++.+.+.||..+++++++|+|++|...++ ++++++......++.+++.|..
T Consensus 81 ~~g~~~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~~~~~l~~l~~~c~~-- 154 (196)
T cd01852 81 APGPHAFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLENSCEALKRLLEKCGG-- 154 (196)
T ss_pred CCCCEEEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHhccHHHHHHHHHhCC--
Confidence 47899999998776 48899999999999999999999999999999976443 7899998877899999998743
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
..++.++... + .....++.+|++.|..++.+++
T Consensus 155 ---------r~~~f~~~~~---~-------~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 155 ---------RYVAFNNKAK---G-------EEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred ---------eEEEEeCCCC---c-------chhHHHHHHHHHHHHHHHHhcC
Confidence 2222232210 0 1112358999999999998743
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=187.40 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=169.5
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCccccc---CCCC----CCCeeEE--E
Q 021685 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVM--V 80 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~---~~~~----~t~~~~~--~ 80 (309)
.+.|+.++|.+...... ..+ -+|+|+++|.+|.|||||+|+|++....... +..+ .|..... .
T Consensus 2 ~~vgi~~l~~~r~~~~~-------k~G-i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (373)
T COG5019 2 GYVGISNLPNQRHRKLS-------KKG-IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA 73 (373)
T ss_pred CcCCcCcchHHHHHHHH-------hcC-CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee
Confidence 47899999999766433 344 4699999999999999999999998432211 1111 1111222 2
Q ss_pred EeeeCCe--EEEEEeCCCCCCCCCCc---HHHHHHHH----H------------hhhcCCCcEEEEEEeCCccccChhHH
Q 021685 81 SRSRAGF--TLNIVDTPGLIEGGYVN---YHAIQLIK----R------------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 81 ~~~~~g~--~l~liDTPG~~~~~~~~---~~~~~~i~----~------------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
.+..+|. +++++||||++|.-... +-+.+.|. . .+.+.++|||||++.+.++++++.|.
T Consensus 74 ~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI 153 (373)
T COG5019 74 ELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI 153 (373)
T ss_pred eeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH
Confidence 2333555 68999999999843221 11222221 1 12367899999999999999999999
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021685 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
.+|+.|.+. .++|.|+.|+|....++ ..++ .+.+++.+..+ .||++.- +.+
T Consensus 154 e~Mk~ls~~------vNlIPVI~KaD~lT~~E--l~~~----K~~I~~~i~~~-----------nI~vf~p------yd~ 204 (373)
T COG5019 154 EAMKRLSKR------VNLIPVIAKADTLTDDE--LAEF----KERIREDLEQY-----------NIPVFDP------YDP 204 (373)
T ss_pred HHHHHHhcc------cCeeeeeeccccCCHHH--HHHH----HHHHHHHHHHh-----------CCceeCC------CCc
Confidence 999999988 59999999999874332 1111 23444444332 3677631 222
Q ss_pred cCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhc
Q 021685 220 ENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKE 297 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~ 297 (309)
+..+ ++.-+-...|+..+++++.++...+..++..++||. |+||...|...-++.|..+...+.+.+-.|++.-
T Consensus 205 e~~~---~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vrgR~-YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~ 278 (373)
T COG5019 205 EDDE---DESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRK-YPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKET 278 (373)
T ss_pred cccc---hhhHHHHHHHhhcCCeEEEeccceeccCCceeeeec-cCCcceecCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 2111 011112467888999999999888888888899999 9999999999999999997777888877777654
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=177.46 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=162.4
Q ss_pred hhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 021685 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g 86 (309)
+-.--.|+..+|....+...++.++++-...++++|+++|+||+|||||||+||+.+...++..+.++.........+++
T Consensus 7 l~~~~~~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~ 86 (296)
T COG3596 7 LNNVLKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG 86 (296)
T ss_pred hhhhhhhhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc
Confidence 44556788899999999988888877777888999999999999999999999988777777776666555555556778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++||||||+++....+.++.+.++.++ ++.|++|++++.+. +.-..|..++..+.-.... +++++++|.+|.
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~ 160 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADR 160 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhh
Confidence 89999999999998888878777777777 78999999977765 4445566777776655433 799999999998
Q ss_pred CCCC----------CCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc-hHH
Q 021685 167 SLPD----------RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPN 235 (309)
Q Consensus 167 ~~~~----------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w-~~~ 235 (309)
..|. ....++|++++.+.+.++++.- -|++.++. . ..| ++.
T Consensus 161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V------------~pV~~~~~----r------------~~wgl~~ 212 (296)
T COG3596 161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEV------------KPVVAVSG----R------------LPWGLKE 212 (296)
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhc------------CCeEEecc----c------------cCccHHH
Confidence 6552 1235556665556666666542 58877761 1 235 899
Q ss_pred HHHHHHHHHhcCCCccee
Q 021685 236 LVKTITEVVLNGSKALLV 253 (309)
Q Consensus 236 L~~~i~~~~~~~~~~~~~ 253 (309)
|...++++++.+.+....
T Consensus 213 l~~ali~~lp~e~rs~~a 230 (296)
T COG3596 213 LVRALITALPVEARSPLA 230 (296)
T ss_pred HHHHHHHhCcccccchhh
Confidence 999999999988776543
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=187.44 Aligned_cols=248 Identities=17% Similarity=0.215 Sum_probs=165.5
Q ss_pred ccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC------CCCCCCe--eEEEEe
Q 021685 11 WMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPR--PVMVSR 82 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~------~~~~t~~--~~~~~~ 82 (309)
+.|+.++|++..+. ...+|. .|+++++|.+|.|||||||+|++.+...-.. .+..|.. ......
T Consensus 1 ~vg~~~lP~q~~r~-------~~KkG~-~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i 72 (366)
T KOG2655|consen 1 YVGFANLPNQVHRK-------SVKKGF-DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI 72 (366)
T ss_pred CCccccChHHHHHH-------HHhcCC-ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee
Confidence 46999999997543 334554 4999999999999999999999885322100 1111222 222333
Q ss_pred eeCCe--EEEEEeCCCCCCCCCC-----------cHHHHHHHHH-------hhhcCCCcEEEEEEeCCccccChhHHHHH
Q 021685 83 SRAGF--TLNIVDTPGLIEGGYV-----------NYHAIQLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDKQIT 142 (309)
Q Consensus 83 ~~~g~--~l~liDTPG~~~~~~~-----------~~~~~~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~~~l 142 (309)
+.+|. +++|+||||++|.-.. +.++.+++.. .+.+.++|||||++++.++++++.|..+|
T Consensus 73 ee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M 152 (366)
T KOG2655|consen 73 EENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM 152 (366)
T ss_pred cCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH
Confidence 44565 6799999999984221 1111122211 12356899999999999988999999999
Q ss_pred HHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCC
Q 021685 143 RAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEND 222 (309)
Q Consensus 143 ~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~ 222 (309)
+.+.+. .++|.|+.|+|...+++ . ......+.+.|..+ .|+++...-. ..
T Consensus 153 k~l~~~------vNiIPVI~KaD~lT~~E-----l-~~~K~~I~~~i~~~-----------nI~vf~fp~~---~~---- 202 (366)
T KOG2655|consen 153 KKLSKK------VNLIPVIAKADTLTKDE-----L-NQFKKRIRQDIEEH-----------NIKVFDFPTD---ES---- 202 (366)
T ss_pred HHHhcc------ccccceeeccccCCHHH-----H-HHHHHHHHHHHHHc-----------CcceecCCCC---cc----
Confidence 999987 59999999999874432 2 11123333333322 3555433211 00
Q ss_pred cccCCCCCCchHHHHHHHHHHHhcCCCcceecccc-ccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccc
Q 021685 223 EKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKL-VEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP 300 (309)
Q Consensus 223 ~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~ 300 (309)
...+ ......|...+++++.++...+-.++.. ++||. |+||...|...-++.|..+...+.+.+-.|++.--..
T Consensus 203 d~~~---~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~-YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~ 277 (366)
T KOG2655|consen 203 DEEL---KEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRK-YPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNN 277 (366)
T ss_pred hhhh---HHHHHHHhhcCCeEEEecCceeecCCceEeecee-cCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 1111 1125677888999999987776666655 88999 9999999999999999997777888877777665433
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=181.86 Aligned_cols=235 Identities=15% Similarity=0.227 Sum_probs=156.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCC--eeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~--~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~ 107 (309)
.++|+|+|.+|+|||||+|+|++......... ...|. .........+|. +++||||||+++..... ..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~-~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS-DC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch-hh
Confidence 59999999999999999999999876544321 11222 223334455664 69999999998754321 11
Q ss_pred HHHHHH--------------------hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 108 IQLIKR--------------------FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~--------------------~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+.. .+.+.++|+|+|+++...+++.+.|.++++.+.+. .|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 121111 12245799999998776656888899999888752 6999999999986
Q ss_pred CCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 168 LPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+++ ... ..+.+++.+... +++++...+. ... +.. ..-...+...+++++.++
T Consensus 157 ~~~e--~~~----~k~~i~~~l~~~-----------~i~~~~~~~~----~~~--~~~----~~~~~~~~~~~Pfavi~s 209 (276)
T cd01850 157 TPEE--LKE----FKQRIMEDIEEH-----------NIKIYKFPED----EED--DET----IEENKKLRSLIPFAVVGS 209 (276)
T ss_pred CHHH--HHH----HHHHHHHHHHHc-----------CCceECCCCC----ccc--HHH----HHHHHhhccCCCcEEEec
Confidence 3321 111 123344444322 3565533221 000 000 001244556788999988
Q ss_pred CCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccch-h-hhhhcc
Q 021685 248 SKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV-W-ARASRR 308 (309)
Q Consensus 248 ~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 308 (309)
...+..++..+++|+ |+||...|...-++.|..+...+.+..-.|+++.-... . .||..+
T Consensus 210 ~~~~~~~g~~~~~R~-y~WG~~~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~ 271 (276)
T cd01850 210 NEEVEVNGKKVRGRK-YPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRTEK 271 (276)
T ss_pred CceeecCCcEEEEec-CCccEEeecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 887777789999999 99999999999999999977889999999998764433 2 355544
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=192.44 Aligned_cols=206 Identities=18% Similarity=0.228 Sum_probs=143.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.++....+.++|..+.+|||||+....... .+.+..++...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4699999999999999999999999876788889999988887888899999999999986533221 23333333322
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...++|++++|++++. +.+..+..++..+.+. + +|+|+|+||+|+.+++. .... ...+.+.+..
T Consensus 290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~~~--~~~~----~~~i~~~l~~---- 353 (472)
T PRK03003 290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDEDR--RYYL----EREIDRELAQ---- 353 (472)
T ss_pred HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccCChhH--HHHH----HHHHHHhccc----
Confidence 3368999999987654 4667777776666542 2 79999999999863211 1111 1122222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
....|++.+|+. ++.+ +.+|++.+........+.+ ++.+++..+++|...|+
T Consensus 354 ------~~~~~~~~~SAk----~g~g-----------v~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~ 412 (472)
T PRK03003 354 ------VPWAPRVNISAK----TGRA-----------VDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGK 412 (472)
T ss_pred ------CCCCCEEEEECC----CCCC-----------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCe
Confidence 112688887763 4443 6677776666554433332 55667888899999999
Q ss_pred ccccHHHHHHHHH
Q 021685 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
++ +++|++|+..
T Consensus 413 ~~-k~~y~~q~~~ 424 (472)
T PRK03003 413 QP-RILFATQAST 424 (472)
T ss_pred ee-eEEEEECCCC
Confidence 96 9999999864
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=160.32 Aligned_cols=144 Identities=20% Similarity=0.316 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
++|+++|.+|+|||||+|+|+|.. ..++++|++|.+.....+.+++..+.++||||+++......+ ....++++...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcC
Confidence 589999999999999999999998 578999999999999999999999999999999775443321 133456666689
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccc
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKD 199 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 199 (309)
+|++++| +|+..+ +.+..++..+.+. | .|+++|+||+|..+..+...+ .+.+.+.+.
T Consensus 79 ~D~ii~V--vDa~~l-~r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id------~~~Ls~~Lg--------- 135 (156)
T PF02421_consen 79 PDLIIVV--VDATNL-ERNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID------AEKLSERLG--------- 135 (156)
T ss_dssp SSEEEEE--EEGGGH-HHHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-------HHHHHHHHT---------
T ss_pred CCEEEEE--CCCCCH-HHHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC------HHHHHHHhC---------
Confidence 9999999 454444 3445565666554 3 799999999998755544332 245555553
Q ss_pred cccCCCcEEEeccc
Q 021685 200 IQGSFVPVVLVENS 213 (309)
Q Consensus 200 ~~~~~ipv~~v~~~ 213 (309)
+|++++++.
T Consensus 136 -----~pvi~~sa~ 144 (156)
T PF02421_consen 136 -----VPVIPVSAR 144 (156)
T ss_dssp -----S-EEEEBTT
T ss_pred -----CCEEEEEeC
Confidence 799998874
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-23 Score=185.01 Aligned_cols=235 Identities=13% Similarity=0.202 Sum_probs=140.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCC------CCC--eeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQS------EGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~------~t~--~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~ 107 (309)
.|+|+|+|.+|+|||||||+|++........ .+. .+. .........++. +++||||||+++.-.. ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhh
Confidence 4999999999999999999999986544421 110 111 122223334454 6899999999874322 222
Q ss_pred HHHHHHh-------------------hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 108 IQLIKRF-------------------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~-------------------~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+..+..+ ..+.++|||||+++++++++++.|.+.|+.|.+. .++|.|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 2222111 1256899999999988888999999999999887 69999999999873
Q ss_pred CCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 169 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.++.. .....+++.++.. +|+++..... .....+ ..-...+...+++++.++.
T Consensus 157 -----~~el~-~~k~~i~~~l~~~-----------~I~~f~f~~~----~~~~~e------~~~~~~~~~~~PFavi~s~ 209 (281)
T PF00735_consen 157 -----PEELQ-AFKQRIREDLEEN-----------NIKIFDFPED----DDDDEE------IEENQKIRSMLPFAVIGSN 209 (281)
T ss_dssp -----HHHHH-HHHHHHHHHHHHT-----------T--S--------------HC------HHHHHHHHHC-SEEE---S
T ss_pred -----HHHHH-HHHHHHHHHHHHc-----------Cceeeccccc----cccccc------cccccccccceeeEEEecc
Confidence 33321 1123333333322 2444322110 000000 0114556667889999988
Q ss_pred Cccee-ccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccc-hh-hhhhcc
Q 021685 249 KALLV-DKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP-VW-ARASRR 308 (309)
Q Consensus 249 ~~~~~-~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 308 (309)
..+.. +++.+++|. |+||...+...-++.|..+...+.+..-.|++..-.. +. .||.++
T Consensus 210 ~~~~~~~g~~~~gR~-YpWG~vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~ 271 (281)
T PF00735_consen 210 TEIENSNGKRVRGRK-YPWGTVEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEK 271 (281)
T ss_dssp SEEEE-SSSEEEEEE-ETTEEEETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHH
T ss_pred eeeeccCCcEEeeee-cCCccccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 87777 788999999 9999999999999999997777788877788776543 22 455544
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-22 Score=190.22 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=139.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.++.......++..+.+|||||+.+.....+ +.+...+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999998777888889998888778888888999999999976554432 2222122111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++... +++..+..++..+.+. + +|+++|+||+|+.. +....+++ .+.+.+.+..
T Consensus 251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~-~~~~~~~~----~~~~~~~~~~---- 315 (429)
T TIGR03594 251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-G----KALVIVVNKWDLVK-DEKTREEF----KKELRRKLPF---- 315 (429)
T ss_pred HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEECcccCC-CHHHHHHH----HHHHHHhccc----
Confidence 2368999999987753 5777787777766553 2 79999999999861 11111111 1222222221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc-------ceeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA-------LLVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~-------~~~~~~~~~~~~p~~~g~ 268 (309)
...+|++++|+. ++.+ +.++++.+........+. -++.++...+++|...|+
T Consensus 316 ------~~~~~vi~~SA~----~g~~-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~ 374 (429)
T TIGR03594 316 ------LDFAPIVFISAL----TGQG-----------VDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGR 374 (429)
T ss_pred ------CCCCceEEEeCC----CCCC-----------HHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCc
Confidence 123789988874 4443 455555444433221111 145566777888888999
Q ss_pred ccccHHHHHHHH
Q 021685 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
++ +++|++|..
T Consensus 375 ~~-k~~y~~q~~ 385 (429)
T TIGR03594 375 RL-KIKYATQVG 385 (429)
T ss_pred ee-eEEEEECCC
Confidence 96 999999984
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=183.56 Aligned_cols=205 Identities=23% Similarity=0.353 Sum_probs=140.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+........++..+.+|||||+.+.....+. .+...+..-
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999999988788888999998887777788999999999999765544321 111111111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++|+|+++.. .++..+..++..+.+. + +|+++|+||||+.++. ..++. .+.+...+..
T Consensus 252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~~--~~~~~----~~~~~~~l~~---- 315 (435)
T PRK00093 252 AIERADVVLLVIDATE-GITEQDLRIAGLALEA-G----RALVIVVNKWDLVDEK--TMEEF----KKELRRRLPF---- 315 (435)
T ss_pred HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCHH--HHHHH----HHHHHHhccc----
Confidence 2368899999977654 4777788777666553 2 7999999999986221 11111 1223222221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc-------ceeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA-------LLVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~-------~~~~~~~~~~~~p~~~g~ 268 (309)
...+|++++|+. ++.+ +.+|++.+........+. -++.+++..+++|...|+
T Consensus 316 ------~~~~~i~~~SA~----~~~g-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~ 374 (435)
T PRK00093 316 ------LDYAPIVFISAL----TGQG-----------VDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGR 374 (435)
T ss_pred ------ccCCCEEEEeCC----CCCC-----------HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCe
Confidence 123799988874 3333 556666555443322111 145567778888888999
Q ss_pred ccccHHHHHHHH
Q 021685 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
.+ +++|++|..
T Consensus 375 ~~-k~~~~~q~~ 385 (435)
T PRK00093 375 RL-KIKYATQVG 385 (435)
T ss_pred ee-eEEEEEcCC
Confidence 86 999999976
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=184.49 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=142.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~ 115 (309)
...+|+++|.+|+|||||+|+|++.+...+++.+++|.++......++|..+.+|||||+.+..... .+.+..++...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999999876778889999988887788899999999999986533222 23333333222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++.+. +.+..+..++..+.+. + +|+++|+||+|+.+.+. . +.+.+.+... +
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~~~--~--------~~~~~~~~~~--l 590 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDEFR--R--------QRLERLWKTE--F 590 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCChhH--H--------HHHHHHHHHh--c
Confidence 3368999999977653 4667777777666442 2 79999999999863211 1 1222222221 1
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
. .....|++++|+. ++.+ +.+|++.+.....+..+.+ ++.++...+++|...|+
T Consensus 591 ~----~~~~~~ii~iSAk----tg~g-----------v~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~ 651 (712)
T PRK09518 591 D----RVTWARRVNLSAK----TGWH-----------TNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGK 651 (712)
T ss_pred c----CCCCCCEEEEECC----CCCC-----------HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCe
Confidence 0 0123688887763 4443 6777777776665432221 44556777888888899
Q ss_pred ccccHHHHHHHHH
Q 021685 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
+. +++|++|..-
T Consensus 652 ~~-ki~y~~q~~~ 663 (712)
T PRK09518 652 QP-RILFATQAST 663 (712)
T ss_pred ee-eEEEEECCCC
Confidence 86 9999999864
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=157.00 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=101.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~~ 116 (309)
..--|+++|+||+|||||+|+|+|..++.+|+.+.+|+....+-...+...+.++||||+......-.+++. .+...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s-- 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA-- 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH--
Confidence 346799999999999999999999999999999999999999888888899999999999876443333322 22222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
...+|++|||++.+. .++..|..+++.+.+.. .|+++++||+|...++
T Consensus 83 l~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~~ 130 (298)
T COG1159 83 LKDVDLILFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKPK 130 (298)
T ss_pred hccCcEEEEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCcH
Confidence 269999999977653 47788988998888721 6999999999987554
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=161.76 Aligned_cols=243 Identities=17% Similarity=0.231 Sum_probs=164.7
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeC
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRA 85 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---~~~~t~~~~~~~~~~~ 85 (309)
..++||.+||++ +.++..+.+.. |+|+.||.+|.|||||+++|++........ .+.....+.++.....
T Consensus 20 ~GHvGFdsLPdQ-------LV~ksv~~GF~-FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 20 AGHVGFDSLPDQ-------LVNKSVSQGFC-FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES 91 (406)
T ss_pred cCccCcccChHH-------HHHHHHhcCce-EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc
Confidence 568999999999 56666777765 999999999999999999999876422111 1222233344444444
Q ss_pred Ce--EEEEEeCCCCCCCCCCcH-----------HHHHHH------HHhh---hcCCCcEEEEEEeCCccccChhHHHHHH
Q 021685 86 GF--TLNIVDTPGLIEGGYVNY-----------HAIQLI------KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITR 143 (309)
Q Consensus 86 g~--~l~liDTPG~~~~~~~~~-----------~~~~~i------~~~~---~~~~~d~il~v~~~d~~~~~~~d~~~l~ 143 (309)
+. +++|+||.|++|.-..++ +...++ ++.+ .+.++|+|||++.++++++...|.-.++
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk 171 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMK 171 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHH
Confidence 54 689999999997422221 111112 1211 3679999999999999999999999999
Q ss_pred HHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEE--ecccCcccCCcC
Q 021685 144 AITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVL--VENSGRCAKNEN 221 (309)
Q Consensus 144 ~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~--v~~~~~~~~~~~ 221 (309)
.+... .++|.|+.|+|.. +.++..+.....+.++..+. +.++- .+......+
T Consensus 172 ~Ldsk------VNIIPvIAKaDti-----sK~eL~~FK~kimsEL~sng------------v~IYqfPtDdetva~~--- 225 (406)
T KOG3859|consen 172 KLDSK------VNIIPVIAKADTI-----SKEELKRFKIKIMSELVSNG------------VQIYQFPTDDETVAKA--- 225 (406)
T ss_pred HHhhh------hhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHHhcC------------ceeeeccchHHHHHHH---
Confidence 98876 6899999999975 23333332234444444433 22221 111100001
Q ss_pred CcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhc
Q 021685 222 DEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKE 297 (309)
Q Consensus 222 ~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~ 297 (309)
-..+-..+++++.++...+.+.+++++.|. |+||...+..-.+|.|.-+.-.+.+.=-.|+.+.
T Consensus 226 -----------N~~mn~~lPFAVvGSte~vKvgnkmvraRq-yPwG~v~vENE~HCDFVKLREmLirtNmedlReq 289 (406)
T KOG3859|consen 226 -----------NSEMNHSLPFAVVGSTEEVKVGNKMVKARQ-YPWGTVQVENELHCDFVKLREMLIRTNMEDLREQ 289 (406)
T ss_pred -----------HHHhhcCCceeEecchHhhhhhhhhhhhcc-CCCCceeecchhhhHHHHHHHHHccccHHHHhhh
Confidence 122333577889999888889999999998 9999999999999999985555666555566654
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=164.32 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=98.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~--~~~~~~~~~i~~~~~~ 117 (309)
..|+++|+||||||||+|+|+|++.+.+++.+++|++......++.+.++.+|||+|+.+.+ ....+..+.... ..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~--Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALI--AI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHH--HH
Confidence 57999999999999999999999999999999999999999999999999999999996543 122222222222 23
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|||++... .+++.|..+.+.|.+. + +|+++|+||+|..
T Consensus 82 ~eADvilfvVD~~~-Git~~D~~ia~~Lr~~-~----kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGRE-GITPADEEIAKILRRS-K----KPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEEcccCc
Confidence 69999999955432 5899999999999843 2 7999999999974
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=136.90 Aligned_cols=114 Identities=25% Similarity=0.401 Sum_probs=88.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~~i~~~~~~~ 118 (309)
+|+|+|.+|+|||||+|+|++.+...++..+++|..+......+++..+.++||||+.+....... ....+.+.+ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence 689999999999999999999877788899999999877677889999999999999775443321 222222333 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
.+|+++||++.+. ..++.+.++++.+. .+ +|+++|+||
T Consensus 79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASN-PITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTS-HSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred HCCEEEEEEECCC-CCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 8999999987654 34556777878784 22 799999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-19 Score=163.60 Aligned_cols=125 Identities=23% Similarity=0.309 Sum_probs=98.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-hh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~-~~ 115 (309)
.+.++++++|+||||||||+|+|++++.+.|++.++||++.....+.++|.++.++||+|+.+++..-++. -+.+ .-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i--GIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI--GIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH--HHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999998765544321 1222 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
....+|++|||++... ..+..|..++..+.. .+|+++|+||+|+..+.
T Consensus 293 ~i~~ADlvL~v~D~~~-~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 293 AIEEADLVLFVLDASQ-PLDKEDLALIELLPK------KKPIIVVLNKADLVSKI 340 (454)
T ss_pred HHHhCCEEEEEEeCCC-CCchhhHHHHHhccc------CCCEEEEEechhccccc
Confidence 3369999999955442 256777777762222 17999999999997543
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=149.78 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=84.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~-~~~~i~~~~~~~~ 119 (309)
+|+++|++|+|||||+|+|+|.....+++.+++|+.........++..+.++||||+.+......+ ..+.....+ ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence 689999999999999999999988788898999988766555566778999999999764222111 112222222 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++.+. ....+..+++.+... + .|+++|+||+|+.
T Consensus 80 aDvvl~VvD~~~--~~~~~~~i~~~l~~~-~----~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 80 VDLILFVVDSDQ--WNGDGEFVLTKLQNL-K----RPVVLTRNKLDNK 120 (270)
T ss_pred CCEEEEEEECCC--CCchHHHHHHHHHhc-C----CCEEEEEECeeCC
Confidence 999999977653 222234445555432 2 7999999999985
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=141.85 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=110.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~----~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+++|+++|.+|+|||||+|+|+|......+..+ .+|.....+.. .....+.+|||||+++.....+++++.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~--- 76 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM--- 76 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh---
Confidence 489999999999999999999996432211111 12222222111 1234799999999987655544443322
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC-------CHHHHHHhhhHHHHH
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL-------DYEVFCSKRSEALLK 187 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~-------~~~~~~~~~~~~l~~ 187 (309)
...++|+++++ .+ .+++..|..+++.+.+. + +++++|+||+|+..++.. ..+++++...+.+.+
T Consensus 77 -~~~~~d~~l~v--~~-~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 77 -KFSEYDFFIII--SS-TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred -CccCcCEEEEE--eC-CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 22578999998 33 36889999999988775 3 689999999998543221 123333333333333
Q ss_pred hhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc
Q 021685 188 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL 251 (309)
Q Consensus 188 ~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~ 251 (309)
.+... +....|++++|+... .+ .+ ++.|.+.+...+++..+..
T Consensus 148 ~~~~~--------~~~~p~v~~vS~~~~--~~---------~~--~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 148 NLQEA--------GVSEPPVFLVSNFDP--SD---------YD--FPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred HHHHc--------CCCCCCEEEEeCCCh--hh---------cC--hHHHHHHHHHHhhHHHHHH
Confidence 33321 112257777776410 00 01 7889999998888775543
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=152.00 Aligned_cols=220 Identities=18% Similarity=0.188 Sum_probs=137.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+|+|+||+|||||+|+|..+++..+++.+++|++.....++++|+++.++||+|+.+.....-+.+..-+..-.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999998722222222222222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHH---hC----ccccCcEEEEEecccCCCCC-CCCHHHHHHhhhHHHHHh
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDN---FG----EQIWKRALIVLTHAQLSLPD-RLDYEVFCSKRSEALLKF 188 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~---~g----~~~~~~~iiV~tk~D~~~~~-~~~~~~~~~~~~~~l~~~ 188 (309)
...+|+|++|+++.. ..+..|..+.+.+... +. +....+++++.||.|+.++- +...... .+
T Consensus 346 ~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~---------~~ 415 (531)
T KOG1191|consen 346 IERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV---------VY 415 (531)
T ss_pred HhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce---------ec
Confidence 468999999976643 3445555555444432 11 11226789999999986441 1111000 00
Q ss_pred hcccccccccccccCCCcEEE-ecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccC-CCCCCC
Q 021685 189 VSPSTWMKKKDIQGSFVPVVL-VENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEG-PNPNEK 266 (309)
Q Consensus 189 i~~~~~~~~~~~~~~~ipv~~-v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~~ 266 (309)
.... .-...|++. +++ .+ +.|+.+|.+.+...+... ....+ .+|..-
T Consensus 416 ~~~~--------~~~~~~i~~~vs~----~t-----------keg~~~L~~all~~~~~~--------~~~~~s~~~t~~ 464 (531)
T KOG1191|consen 416 PSAE--------GRSVFPIVVEVSC----TT-----------KEGCERLSTALLNIVERL--------VVSPHSAPPTLS 464 (531)
T ss_pred cccc--------cCcccceEEEeee----ch-----------hhhHHHHHHHHHHHHHHh--------hcCCCCCchhhc
Confidence 1100 001134433 332 22 347888888777666443 22122 333444
Q ss_pred CcccccHHHHHHHH--HHhhhhHHHHhHhhhhcc
Q 021685 267 GKILIPFIFAFQYF--FIIKPLIRAIKSDAAKEA 298 (309)
Q Consensus 267 g~~~~~l~~~~q~~--~~~~~~~~~~~~~~~~~~ 298 (309)
++++ .-+|.++.+ +..+.+-...+.|+.=..
T Consensus 465 ~~r~-~~~~r~~~~~~l~~~~~~k~~~~D~~la~ 497 (531)
T KOG1191|consen 465 QKRI-KELLRTCAAPELERRFLAKQLKEDIDLAG 497 (531)
T ss_pred chhH-HHHHHhhhhhhHHHHHHhhhcccchhhcc
Confidence 4554 777777777 555555555555655444
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-17 Score=133.28 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|+|++......++.++++..........++..+.+|||||+.+...... +.+........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 6899999999999999999999987656667777777776666777888999999999976432111 11111111112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|++++|++.+. ..+..+..++..+... + .|+++|+||+|+.+.
T Consensus 82 ~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATE-GITEQDLRIAGLILEE-G----KALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCC-CcchhHHHHHHHHHhc-C----CCEEEEEeccccCCc
Confidence 258899999977643 3344444554444332 2 699999999998644
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-19 Score=162.62 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=131.3
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
.+.+.++.+.. .+++|+|+|.+|+|||||||+|.|-. .+.++.. .+|..+..+... .-.++++||.||.+
T Consensus 23 ~i~~~l~~~~~---~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p-~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 23 KIREALKDIDN---APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHP-KFPNVTLWDLPGIG 97 (376)
T ss_dssp HHHHHHHHHHH-----EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-S-S-TTEEEEEE--GG
T ss_pred HHHHHHHHhhc---CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCC-CCCCCeEEeCCCCC
Confidence 34444444444 78999999999999999999998732 1222222 345555555432 22369999999998
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC-------CCCCC
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL-------SLPDR 171 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~-------~~~~~ 171 (309)
......+++++.+. -...|++|++ . ..+++..|..+.+.+.+. | +++++|-||+|. ..|..
T Consensus 98 t~~f~~~~Yl~~~~----~~~yD~fiii--~-s~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~ 165 (376)
T PF05049_consen 98 TPNFPPEEYLKEVK----FYRYDFFIII--S-SERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRT 165 (376)
T ss_dssp GSS--HHHHHHHTT----GGG-SEEEEE--E-SSS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT
T ss_pred CCCCCHHHHHHHcc----ccccCEEEEE--e-CCCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcc
Confidence 87777777776542 2478988888 3 348999999999999877 4 799999999975 12223
Q ss_pred CCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc
Q 021685 172 LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL 251 (309)
Q Consensus 172 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~ 251 (309)
.+.++.+++..+...+.+++. +....+|+++++.. +...+ ++.|.+++..-++...++.
T Consensus 166 f~~e~~L~~IR~~c~~~L~k~--------gv~~P~VFLVS~~d-----------l~~yD--Fp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 166 FNEEKLLQEIRENCLENLQKA--------GVSEPQVFLVSSFD-----------LSKYD--FPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp --HHTHHHHHHHHHHHHHHCT--------T-SS--EEEB-TTT-----------TTSTT--HHHHHHHHHHHS-GGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc--------CCCcCceEEEeCCC-----------cccCC--hHHHHHHHHHHhHHHHHHH
Confidence 333344433333333333322 22336788887741 11222 7888888888887776654
Q ss_pred eec-------cccccCCCCCCCCcccccHHHHHHHH-HHhhhhHHHH-hHhhhhcccchhhhhh
Q 021685 252 LVD-------KKLVEGPNPNEKGKILIPFIFAFQYF-FIIKPLIRAI-KSDAAKEAKPVWARAS 306 (309)
Q Consensus 252 ~~~-------~~~~~~~~p~~~g~~~~~l~~~~q~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (309)
.+. ..+.+.+. .-+.++|. .+.+.+ .-.-|+.+.+ ..|+....+.+..||.
T Consensus 225 fllsLp~is~~~I~kKk~-~lk~~Iw~---~Al~s~~~a~iP~~g~~~~~D~~~L~~~l~~Yr~ 284 (376)
T PF05049_consen 225 FLLSLPNISEAAIEKKKE-SLKQKIWL---EALKSAAVATIPVPGLSSACDLEILEKCLNQYRS 284 (376)
T ss_dssp HHHHS---SHHHHHHHHH-HHHHHHHH---HHHHT--BSS-CCCSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhHHHHHHHHH-HHHHHHHH---HHHHHHHhccCCCcccccccCHHHHHHHHHHHHH
Confidence 221 22222222 23333331 222222 2234777775 6788888888888885
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=134.86 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+|+++|.+|+|||||+|+|.+.+. .++..+++|..+......+.+. .+.+|||||+.+.............+.+ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH--Hh
Confidence 689999999999999999998764 5566666677766666666776 9999999998643222111111111111 47
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+|++++|+++... ........+.+.+.+.......+|+++|+||+|+.++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 8999999776532 1112223455556554322123789999999998643
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=147.09 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=105.4
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
..+.++++...+.+-.+|+|.|.||||||||++++++.+. .+.++|.||+......++.++.++++|||||+.|.....
T Consensus 154 ~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E 232 (346)
T COG1084 154 ARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE 232 (346)
T ss_pred HHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH
Confidence 3445566666777789999999999999999999999986 788999999999999999999999999999999865432
Q ss_pred H-----HHHHHHHHhhhcCCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 105 Y-----HAIQLIKRFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 105 ~-----~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ++.-.++ .=.++|||++++..+. ++ +....+++.+...|. .|+++|+||+|...
T Consensus 233 rN~IE~qAi~AL~-----hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 233 RNEIERQAILALR-----HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred hcHHHHHHHHHHH-----HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 2 2222222 3458899997776543 44 344568888988886 58999999999863
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=148.34 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=89.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+|+|.....+++.+++|+.........++..+.+|||||+.+... ......+.....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~-- 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS-- 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH--
Confidence 45799999999999999999999998777778888888777767778888999999999965322 222222222122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++|+|++... .++..+..+++.+... + .|.++|+||+|+.
T Consensus 129 l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~ 173 (339)
T PRK15494 129 LHSADLVLLIIDSLK-SFDDITHNILDKLRSL-N----IVPIFLLNKIDIE 173 (339)
T ss_pred hhhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCc
Confidence 268999999966432 4666666677666543 2 5778999999985
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=142.86 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=89.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhhc
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLLN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~~ 117 (309)
.-.|+|+|.+|+|||||+|+|+|.+.+.+++.+.+|+.........++..+.++||||+.+......+. ....... .
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~--~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS--L 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--H
Confidence 467999999999999999999999988888888888776655555566799999999997644222221 1122222 2
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++.+. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 83 ~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 KDVDLVLFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred hcCCEEEEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 68999999977654 4666676676666532 26999999999986
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=145.96 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~- 115 (309)
..++|+++|.+|+|||||+|+|++.+ +.+.+.+++|.++......+ +|.++.||||||+...- .....+.++..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHHH
Confidence 34899999999999999999999987 46677778888888777777 57899999999994321 111222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHH-HHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|++++|++.+.. ....+. .+...+.+. +. ..+|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~-~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDP-DREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCC-chHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCC
Confidence 12589999999776432 122222 233334332 31 126999999999985
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=130.80 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~--~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||+|+|++... .++..+.+|..........++.++.||||||+.+........+ ..+. .+ ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-AH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-Hh
Confidence 799999999999999999999864 3444555566665555566778999999999965332211111 1111 11 12
Q ss_pred CCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 119 TIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..|++|+|++..... ++ .....+++.+.+.+. ..|+++|+||+|+..
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 468999997765321 22 223456666665542 279999999999863
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=126.66 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~-~~~~~i~~~~~~~ 118 (309)
++|+++|.+|+|||||+|++++.....+++.++++...........+.++.+|||||+.+.....+ ........+. .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI--E 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH--h
Confidence 689999999999999999999987666677777777776666777888999999999976543211 1111112222 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++++|++++. ..+..+...+.. .. ..|+++|+||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~-~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASR-GLDEEDLEILEL---PA----DKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHh---hc----CCCEEEEEEchhcCCc
Confidence 8999999977763 233444444332 22 2799999999998643
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=146.20 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.|+++|.+|||||||+|+|++... .+++.+.+|+.+......+.+ ..+.|+||||+.+........-..+.+. ..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH--LER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH--HHh
Confidence 699999999999999999999875 788999999999988887764 5799999999976443221111111122 268
Q ss_pred CcEEEEEEeCCc---cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~---~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|+++.. .........+++.+......-..+|.++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999999976541 112233345666665542222237999999999985
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-16 Score=126.10 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=85.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+++|.+.......+.++...........+..+.+|||||+.+........+. .... .
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS--A 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH--H
Confidence 358999999999999999999999886666665555555555445556678999999999765433322211 1111 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.... .+..+..+.+.+... + .|+++|+||+|+.
T Consensus 80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-K----TPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-C----CCEEEEEEchhcc
Confidence 2689999999776532 455566666666543 1 6899999999985
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-16 Score=130.91 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=84.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.. ...+++.+++|..+..+.. + ..+.+|||||++...... ..+...+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 56999999999999999999999975 4455666666665544433 2 379999999987543221 122233334
Q ss_pred hhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++.. ..+|++++|++.+. +++..+..+++.+... + +|+++|+||+|+.
T Consensus 94 ~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~ 142 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-G----IPVLIVLTKADKL 142 (179)
T ss_pred HHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 4432 36789999976643 4777777776666442 2 7999999999985
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=142.99 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=86.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.|+++|.+|||||||+|+|++... .+++++.+|..+......+ ++.++.++||||+.+........-..+.+++ .+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hh
Confidence 589999999999999999998764 5788889999998888777 5678999999999765433221111111122 58
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.....+....+.+.+.........+|+++|+||+|+.+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 8999999776532211222345555554322112379999999999853
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=148.02 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=93.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~~~ 119 (309)
+|+++|++|||||||+|+|++...+.+++.+++|++.......+++..+.||||||+...... .+...+....++ ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence 589999999999999999999987778889999998888888899999999999998543211 122222222222 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+|++++|++... +++..+..+.+.+.+. + +|+++|+||+|+...
T Consensus 79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~ 122 (429)
T TIGR03594 79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE 122 (429)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc
Confidence 999999976643 4778888888887763 2 799999999998643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-16 Score=147.57 Aligned_cols=121 Identities=24% Similarity=0.288 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh-hh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF-LL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~-~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+.+.+++.+++|.+.......++|.++.+|||||+.+....-+.. .+++. ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~--gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI--GIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH--HHHHHHHH
Confidence 4699999999999999999999998877788889999988888888899999999999996532211110 01111 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++.+. ..+..+..++.. . ...|+++|+||+|+.+
T Consensus 292 ~~~aD~il~VvD~s~-~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASE-PLTEEDDEILEE-----L--KDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCC-CCChhHHHHHHh-----c--CCCCcEEEEEhhhccc
Confidence 268999999977643 233334433322 1 1279999999999863
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-16 Score=142.33 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
-.|+++|.+|+|||||+|+|++... .+++++.+|..+......+.+ ..+.|+||||+.+........-..+.+.+ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence 3689999999999999999998764 577888889888888877776 89999999999764432211111111122 5
Q ss_pred CCcEEEEEEeCCccc---cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYR---VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~---~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++++... ..+....+.+++.........+|+++|+||+|+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 889999997765421 1112233444454432222247999999999985
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=126.40 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=91.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
...-|+++|++|||||||||+|+|.. .+.+|..||.|+..-.+.. ++ .+.+||.||++-..... ++.-..+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999999965 5789999999887655443 33 38899999997543222 234445566
Q ss_pred hhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 114 FLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
|+.. ....+++++++.. +.+...|.++++++.+.- .|+++|+||+|..+..
T Consensus 100 YL~~R~~L~~vvlliD~r-~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 100 YLEKRANLKGVVLLIDAR-HPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKKS 151 (200)
T ss_pred HHhhchhheEEEEEEECC-CCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCChh
Confidence 6643 2466666664432 247788999999988763 7999999999987443
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=149.97 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=120.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhc
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~ 117 (309)
..+|+++|.||+||||++|+|+|.+. .+++.++.|.+-.+......|..+.++|+||.++-... .++ ...++++.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHhc
Confidence 46799999999999999999999986 89999999999999999999999999999999875432 223 335778888
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
.++|+++-| +|+..+ ++++.-.++ ... ...|+++++|.+|..+..+...+. +.+.+.+.
T Consensus 80 ~~~D~ivnV--vDAtnL---eRnLyltlQ-LlE--~g~p~ilaLNm~D~A~~~Gi~ID~------~~L~~~LG------- 138 (653)
T COG0370 80 GKPDLIVNV--VDATNL---ERNLYLTLQ-LLE--LGIPMILALNMIDEAKKRGIRIDI------EKLSKLLG------- 138 (653)
T ss_pred CCCCEEEEE--cccchH---HHHHHHHHH-HHH--cCCCeEEEeccHhhHHhcCCcccH------HHHHHHhC-------
Confidence 899999999 665433 443322222 111 127999999999997666655442 45555554
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+|+++.++. ++.+ +++|.+.+.....++.
T Consensus 139 -------vPVv~tvA~----~g~G-----------~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 -------VPVVPTVAK----RGEG-----------LEELKRAIIELAESKT 167 (653)
T ss_pred -------CCEEEEEee----cCCC-----------HHHHHHHHHHhccccc
Confidence 899988763 3332 5677777776665553
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=123.92 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=80.9
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEE
Q 021685 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (309)
++|.+|+|||||+|++++.. +.++..+++|.......+.+++..+.+|||||+.+......+. .....++...++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEE
Confidence 58999999999999999986 4666777788877777777888899999999997654332110 112233333689999
Q ss_pred EEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 124 l~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++... . .....++..+.+. .+|+++|+||+|+.+.
T Consensus 79 i~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 79 VNVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEAEK 116 (158)
T ss_pred EEEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence 99966543 2 2233444444332 2799999999998643
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=128.86 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=83.9
Q ss_pred EEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcCCCc
Q 021685 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~~~d 121 (309)
+++|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++ .++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence 479999999999999999987656667777777766667777888999999999976433 1111111222222 5799
Q ss_pred EEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++++|++... ..+..+..+.+.+.+. + .|+++|+||+|+.+
T Consensus 79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~ 119 (157)
T cd01894 79 VILFVVDGRE-GLTPADEEIAKYLRKS-K----KPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEEeccc-cCCccHHHHHHHHHhc-C----CCEEEEEECcccCC
Confidence 9999976643 3445555666666543 2 79999999999863
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=147.32 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=88.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+...+++.+++|++.......++|.++.+|||||+.+....-+.. ......+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~-- 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA-- 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH--
Confidence 5699999999999999999999998877788899999888888888899999999999996543222211 1111122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. ..+..+. ++..+.. . .+|+++|+||+|+.
T Consensus 280 ~~~aD~il~V~D~s~-~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 280 IKQADLVIYVLDASQ-PLTKDDF-LIIDLNK---S--KKPFILVLNKIDLK 323 (442)
T ss_pred HhhCCEEEEEEECCC-CCChhHH-HHHHHhh---C--CCCEEEEEECccCC
Confidence 268999999977653 2333333 4444322 1 26999999999985
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=127.06 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
+||+|+|.+|||||||+|++++.+... ...+..+.........++| ..+.||||||..+... ..++..... ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~--~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR--FRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH--Hhh
Confidence 589999999999999999999876422 2223333233333445566 4678999999865322 222222211 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC-ccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g-~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...+|++++|++++...--+....+.+.+.+... .....|+++|+||+|+......+.+ .+.++..+.
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~--------~~~~~~~~~--- 146 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRH--------VLSVLVRKS--- 146 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHH--------HHHHHHHHh---
Confidence 2689999999887542111122344555554431 1122699999999999543222221 122221111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
..+|++.+|+. ++.+ +.+|++.+...+..+++.
T Consensus 147 -------~~~~~~e~Sak----~g~~-----------v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 147 -------WKCGYLECSAK----YNWH-----------ILLLFKELLISATTRGRS 179 (198)
T ss_pred -------cCCcEEEecCC----CCCC-----------HHHHHHHHHHHhhccCCC
Confidence 12577777764 3433 788888888776655443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=123.92 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=75.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|++.+... .....+++..........++. .+.||||||..+..... ..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~- 70 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMR-------DLYI- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHH-------HHHh-
Confidence 37999999999999999999997753 222333333333334445554 57889999985432211 1122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++..........+++.+.+.... ...|+++|+||+|+.+.
T Consensus 71 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 71 -KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 5889999998876422112233455556554321 23699999999998643
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=124.32 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++.... ....+..+.+........++ ..+.+|||||.... ......+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~-- 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY-- 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--
Confidence 58999999999999999999988642 22222222222222333333 47889999998321 11122222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc---cccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~---~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++....-.....++..+.+..+. ....|+++|+||+|+.++
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 125 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH 125 (168)
T ss_pred ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc
Confidence 6899999998876422112234566666665442 123789999999998643
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=146.07 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=92.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
...+|+|+|.+|||||||+|+|++...+.+++.+++|.+.......+++..+.||||||+..... ..+.+......++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~- 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM- 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH-
Confidence 44799999999999999999999988777788888888888877888899999999999853211 1112222222222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+. +.+..+..+...+.+. .+|+++|+||+|+.
T Consensus 116 -~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 -RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred -HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 58999999987754 3556677777777642 27999999999985
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=129.14 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhh-
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~- 115 (309)
..++|+|+|.+|+|||||+|++++... .+...+.+|..+......+.+. .+.+|||||+.+... ....+.+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHH
Confidence 348999999999999999999999864 3333344455555555555554 899999999864321 12212121111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
....+|++++|++.+..........+.+.+......+ .|+++|+||+|+.+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~ 167 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLD 167 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCC
Confidence 1257899999977653222122223444444432222 69999999999863
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-15 Score=120.66 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||+|++++.+. .....+..+.+.......+++. .+.+|||||... ....+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~-- 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYI-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--
Confidence 4899999999999999999999875 3334445555555555556664 689999999632 112222333
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.. ++... ..++..+....+. ..|+++|+||+|+.....
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhccccCc
Confidence 688999999888642 23332 3456555554443 269999999999854433
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=140.67 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=86.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-hcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~~ 118 (309)
.|+++|.+|||||||+|+|++.+. .+++++.+|..+......+. +..+.++||||+.+........ ...++ ...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gL---g~~fLrhie 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGL---GHQFLRHIE 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchH---HHHHHHHHh
Confidence 799999999999999999998874 56778888988887777776 7899999999997643322111 11122 125
Q ss_pred CCcEEEEEEeCCcc---ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 119 ~~d~il~v~~~d~~---~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
+++++++|++++.. ........+.++|.........+|.++|+||+|+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 89999999877532 1112234455666554322234899999999997
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=121.50 Aligned_cols=118 Identities=21% Similarity=0.197 Sum_probs=75.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....+++.........+++. .+.+|||||..+.... ...++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~- 71 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAM-------REQYM- 71 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHH-------HHHHH-
Confidence 48999999999999999999998753 333333433333333445554 6889999998543221 12222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++... +. .-..++..+.+.... ...|+++|+||+|+...
T Consensus 72 -~~~~~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 72 -RTGEGFLLVFSVTDRGSFE-EVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ 122 (164)
T ss_pred -hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence 5789999998876422 21 223345555443221 12699999999998543
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=121.88 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+.|+++|.+|+|||||+|+|++....... ..+++|.........+. +..+.+|||||..+ +...+..++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~- 72 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA- 72 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh-
Confidence 47899999999999999999986422221 12344444444445555 77999999999732 112222222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+. .........+..+.. .+. +|+++|+||+|+.
T Consensus 73 -~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 73 -GGIDLVLLVVAADE-GIMPQTREHLEILEL-LGI---KRGLVVLTKADLV 117 (164)
T ss_pred -hcCCEEEEEEECCC-CccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence 58999999987753 222333344433322 231 4899999999985
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-15 Score=122.14 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
++||+++|.+|+|||||+|+++.... .....+++..........++. .+.+|||||.......... ++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~- 70 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-------YM- 70 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHH-------HH-
Confidence 47999999999999999999996542 233334444333334455554 5679999998433222111 11
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++... +.. ...++..+..... ....|+++|+||+|+.+.
T Consensus 71 -~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 71 -KNGQGFVLVYSITAQSTFND-LQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence 5789999998876432 322 2345555554322 123699999999998643
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=120.18 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....++.+.+........++. .+.+|||||.... ......++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-- 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY-- 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh--
Confidence 7999999999999999999998753 2222233333333334444543 6899999996321 11122222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++.. -..++..+.+.... ..|+++|+||+|+......+
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~-l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 126 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNN-VKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVD 126 (166)
T ss_pred CcCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCC
Confidence 589999999887532 1222 23455555544322 26899999999986444333
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-15 Score=122.69 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++.+.+. .....+..+.+........++ ..+.+|||||..... .....++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence 48999999999999999999998763 222222222222223334454 468999999963211 1112222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.++|++++|++++... +.. -.+++..+...... ..|+++|+||+|+.+......
T Consensus 74 -~~ad~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~~~~~~ 128 (167)
T cd01867 74 -RGAMGIILVYDITDEKSFEN-IRNWMRNIEEHASE--DVERMLVGNKCDMEEKRVVSK 128 (167)
T ss_pred -CCCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEECcccccccCCCH
Confidence 5899999998875422 222 23466666554322 269999999999965443333
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-15 Score=122.48 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-++|+++|.+|+|||||+|++++... .....+..+.+........++. .+.+|||||... +......++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~- 73 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY- 73 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 37999999999999999999998764 2223344444444444555554 689999999732 111122222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..++++++|+++... .+... ..++..+.+..... .|+++|+||+|+........
T Consensus 74 -~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~ 128 (165)
T cd01868 74 -RGAVGALLVYDITKKQTFENV-ERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPT 128 (165)
T ss_pred -CCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CeEEEEEECccccccccCCH
Confidence 578999999887532 22222 34566665554322 68999999999864433333
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=123.19 Aligned_cols=163 Identities=14% Similarity=0.123 Sum_probs=96.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++.+... ..+....+ +.........+++ ..+.||||||.... ......++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~- 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY- 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc-
Confidence 5899999999999999999998764 22222222 2222222334444 47889999996221 11112222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++++|++++....-..-..++..+.+..... .|+++|+||+|+..+.....++ .+.+....
T Consensus 72 -~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~~--------~~~l~~~~---- 136 (191)
T cd04112 72 -RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRED--------GERLAKEY---- 136 (191)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHHH--------HHHHHHHc----
Confidence 57999999988754211112244666666654332 6999999999986443333222 11222111
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.+|++.+++. ++.+ +.+|++.+...+.+..
T Consensus 137 -------~~~~~e~Sa~----~~~~-----------v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 137 -------GVPFMETSAK----TGLN-----------VELAFTAVAKELKHRK 166 (191)
T ss_pred -------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHHhc
Confidence 1466666653 3332 7888888887776653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=122.10 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+..... ...+..+..........++ ..+.+|||||..+... ....++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~-- 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYY-- 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHc--
Confidence 799999999999999999999876321 1122222222222233333 4789999999732211 111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++...-...-..+++.+.+..... .|+++|+||+|+.+...
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERV 123 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccc
Confidence 68999999988754221122244666665543222 68999999999964443
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=122.11 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... ..... ++......... ......+.+|||||..+..... ..+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYI-PTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQ-------RLSI-- 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcC-CcchheEEEEEEECCEEEEEEEEECCCCCcchHHH-------HHHh--
Confidence 7999999999999999999998763 21111 11111111122 2234578999999985432111 1111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcc-ccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~-~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++..........+++.+.+..+.. ...|+++|+||+|+.+...
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE 125 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence 58899999988865322223345666666654421 2369999999999864333
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=123.02 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~----g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+. +..+.+|||||..+. ......++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh
Confidence 5899999999999999999998753 11111222222222222332 457999999996321 11122233
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
+.+|++++|++++.......-..++..+..... ..|+++|+||+|+......+.
T Consensus 73 --~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~~ 126 (162)
T cd04106 73 --RGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVITN 126 (162)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCCH
Confidence 689999999887643211222345555554332 269999999999865444333
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=119.46 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=73.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+... ....++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~- 70 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM- 70 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH-
Confidence 37999999999999999999998763 222333333333333445554 578899999743211 112222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++... +.. -..+...+.+.... ...|+++|+||+|+..
T Consensus 71 -~~~~~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~ 120 (162)
T cd04138 71 -RTGEGFLCVFAINSRKSFED-IHTYREQIKRVKDS-DDVPMVLVGNKCDLAA 120 (162)
T ss_pred -hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4789999998876422 222 22344555444321 2369999999999853
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=119.11 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||++++.+...... ..+..+.+........++ ..+.+|||||... .......++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~- 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY- 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh-
Confidence 48999999999999999999987653221 112222233333455566 4789999999622 111122222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++....-.....++..+....... .|+++|+||+|+...+.
T Consensus 74 -~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 74 -RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQRE 125 (165)
T ss_pred -ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccc
Confidence 57899999988764321123345666666543222 68999999999865443
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=139.83 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
..|+|+|.+|+|||||+|+|++... .+++++.+|..+....+.+.+..+.|+||||+.+........-..+.+. ..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrh--ier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRH--IER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHH--HHh
Confidence 4799999999999999999999865 5688899999998888888888999999999975433221111111111 258
Q ss_pred CcEEEEEEeCCcc---ccChhHH-HHHHHHHHHhC---------ccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDVY---RVDNLDK-QITRAITDNFG---------EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~---~~~~~d~-~~l~~l~~~~g---------~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|+++... +-...+. .+.+.|..... ....+|+|+|+||+|+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 9999999766421 1001122 23334433321 12247999999999984
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=121.76 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=75.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
++||+++|++|+|||||+|++++.+... ...+..+.........+++ ..+.+|||||.... ......++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~- 71 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY- 71 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh-
Confidence 3799999999999999999999987432 1122222222223334444 57889999996321 11111122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.++|++++|++++...--.....++..+...... ..|+++|+||+|+.+..
T Consensus 72 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 72 -RGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESKR 122 (163)
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccC
Confidence 5889999998875422112334566666665432 26899999999986433
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=127.17 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=77.6
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCC----cHHHHHHHHHhhhcC
Q 021685 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYV----NYHAIQLIKRFLLNK 118 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~----~~~~~~~i~~~~~~~ 118 (309)
++|++|+|||||+|+|++.+. .++..+++|..+......+. +.++.+|||||+.+.... ..++...+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------R 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------h
Confidence 589999999999999999875 55666777777766666677 889999999998643221 11222222 4
Q ss_pred CCcEEEEEEeCCccc-----cC-hhHHHHHHHHHHHhCc-----cccCcEEEEEecccCCC
Q 021685 119 TIDVLLYVDRLDVYR-----VD-NLDKQITRAITDNFGE-----QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-----~~-~~d~~~l~~l~~~~g~-----~~~~~~iiV~tk~D~~~ 168 (309)
++|++++|++.+... .. .....+...+...... ...+|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 799999997765321 11 1112233333322111 12379999999999863
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-15 Score=125.91 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC------ccccc---------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK------AVTVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~------~~~~~---------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+++|+++|..++|||||+++|++.. ..... ...+.|.......++.++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 5899999999999999999998641 00000 1234455555555667788999999999842
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhH
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~ 183 (309)
+...+...+ ..+|++++|++.+. .+...+.+.+..+.+. |. .++|+|+||+|+... ++..+...+
T Consensus 78 ---~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~-----~~~~~~~~~ 142 (195)
T cd01884 78 ---YIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD-----EELLELVEM 142 (195)
T ss_pred ---HHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc-----HHHHHHHHH
Confidence 222222222 58999999977653 4667777777766553 31 247899999998521 112222224
Q ss_pred HHHHhhcccccccccccccCCCcEEEeccc
Q 021685 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 184 ~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
.+++.+.+. ++ ....+|++++|+.
T Consensus 143 ~i~~~l~~~-g~-----~~~~v~iipiSa~ 166 (195)
T cd01884 143 EVRELLSKY-GF-----DGDNTPIVRGSAL 166 (195)
T ss_pred HHHHHHHHh-cc-----cccCCeEEEeeCc
Confidence 455555432 11 1224899999874
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=118.68 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|+|||||+|++++...... ..+..+.+........++ ..+.||||||..+ .......++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 74 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY- 74 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh-
Confidence 38999999999999999999998764222 222223333333344444 4789999999621 111122233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+..... .|+++|+||+|+..+...+.
T Consensus 75 -~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~ 129 (168)
T cd01866 75 -RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSY 129 (168)
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCH
Confidence 58999999988753221122234665565543222 68999999999865444333
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=117.86 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+..+.+........++ ..+.+|||||... +......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~-- 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY-- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998764 222223333333334455555 4788999999622 111222233
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|+++... ++.. -..++..+....+. ..|+++|+||+|+.....
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~-~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 71 RGAVGALLVYDITNRESFEN-LKNWLKELREYADP--NVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEEchhcccccC
Confidence 589999999877532 2211 12355555554332 279999999999864433
|
Rab GTPases are implicated in vesicle trafficking. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-15 Score=120.93 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+.... ....+++..........++ ..+.+|||||..+.... ...++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~~~-- 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM-------RDQYM-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHH-------HHHHH--
Confidence 48999999999999999999987632 2222333333333444444 46789999998543221 11222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++....-..-..+...+.+.... ...|+++|+||+|+.+.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE 120 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 4789999998876421111223344444443322 13699999999998643
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=119.33 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||++++++.... ....++...........+|. .+.||||||.......... +.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~- 70 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL-------YI- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHH-------HH-
Confidence 379999999999999999999987542 22222322333334445554 5778999997543322211 11
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++... +. .-..++..+.+..+. ...|+++|+||+|+.+
T Consensus 71 -~~ad~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~ 120 (163)
T cd04176 71 -KNGQGFIVVYSLVNQQTFQ-DIKPMRDQIVRVKGY-EKVPIILVGNKVDLES 120 (163)
T ss_pred -hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence 5889999998876432 22 224455566554321 2379999999999854
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=144.54 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~ 118 (309)
.+|+++|.+|||||||+|+|++...+.++..+++|.+.......++|..+.+|||||+.+... ...........+ ..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELA--IE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHH--HH
Confidence 589999999999999999999998777888888888888888888999999999999975221 111111112222 26
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... +++..+..+.+.+.+. + .|+++|+||+|+.
T Consensus 80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRA-GLTPADEEIAKILRKS-N----KPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCc
Confidence 8999999977643 4677777777777654 2 7999999999964
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=126.35 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+. ...+.||||||.... ......++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKMLDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence 5899999999999999999998753 22222233334333344443 357899999996321 11222233
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++. .-..++..+.+.... ....|+++|+||+|+..+..
T Consensus 72 -~~ad~iilV~D~t~~~s~~-~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~ 126 (215)
T cd04109 72 -YGAHAVFLVYDVTNSQSFE-NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT 126 (215)
T ss_pred -hcCCEEEEEEECCCHHHHH-HHHHHHHHHHHhccccCCCceEEEEEECcccccccc
Confidence 589999999887642 232 223466667665442 22247899999999864433
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=119.43 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=74.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+||+++|.+|+|||||+|++.+... .....+..+.+.......+. ...+.||||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 48999999999999999999998753 22222222222222222221 25789999999622
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
+......++ .++|++++|++++... +.. -..++..+..... ....|+++|+||+|+.+....+
T Consensus 76 ~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 76 FRSLTTAFF--RDAMGFLLIFDLTNEQSFLN-VRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccC
Confidence 111222223 6899999998876421 222 2345555554322 1126899999999986544333
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=123.10 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=76.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.. +.++..+++|..+... .++ .+.+|||||++......+ .+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999976 3555666666554433 222 689999999865443332 22222222
Q ss_pred hhh--cCCCcEEEEEEeCCcc-cc---------ChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLL--NKTIDVLLYVDRLDVY-RV---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~--~~~~d~il~v~~~d~~-~~---------~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++|++.+.. .+ ...+..+...+... ..|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 332 2467889999665421 01 11233444444321 27999999999985
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=129.88 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCCeEEE
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLN 90 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~l~ 90 (309)
||+++|++|+|||||+|+|+.......+. ..+.|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999998765433210 134455555666677888999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 91 liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
||||||+.+ +...+...+ ..+|++++|++... .....+......+. ..+. +++|+|+||+|+.
T Consensus 81 liDTpG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence 999999732 111111222 58999999977653 34444444443333 3332 4678899999985
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=123.76 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||+|++.+.... ....+++..........++. .+.||||||..+..... ..++ .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR-------DQWI--R 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH--H
Confidence 5899999999999999999976532 22233332222223345554 58899999974322111 1122 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~ 171 (309)
++|++++|++++.......-..++..+...... ....|+++|+||+|+.....
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~ 123 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE 123 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc
Confidence 889999998876422112224466666554321 12369999999999864433
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-15 Score=124.86 Aligned_cols=166 Identities=17% Similarity=0.279 Sum_probs=105.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCCCeeEEEEee--eCCeEEEEEeCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-----------------STFQSEGPRPVMVSRS--RAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~l~liDTPG~~ 98 (309)
+..+|+++|..++|||||+++|++...... ....+.|......... ..+..++++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 357999999999999999999996532110 0112345555555666 788999999999983
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+ +...+...+ ..+|++++|++... .+.....+.+..+... + .|+++|+||+|+. ...+++..
T Consensus 82 ~-------f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~-~----~p~ivvlNK~D~~---~~~~~~~~ 143 (188)
T PF00009_consen 82 D-------FIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILREL-G----IPIIVVLNKMDLI---EKELEEII 143 (188)
T ss_dssp H-------HHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS---HHHHHHHH
T ss_pred c-------eeeccccee--cccccceeeeeccc-cccccccccccccccc-c----cceEEeeeeccch---hhhHHHHH
Confidence 2 222222222 68999999977653 4667777777777554 2 6899999999986 11222222
Q ss_pred HhhhHHHH-HhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 179 SKRSEALL-KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 179 ~~~~~~l~-~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+.++ .+++.. .+.. ...+|++++|+. ++.+ +..|++.+...++
T Consensus 144 ----~~~~~~l~~~~-~~~~----~~~~~vi~~Sa~----~g~g-----------i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 ----EEIKEKLLKEY-GENG----EEIVPVIPISAL----TGDG-----------IDELLEALVELLP 187 (188)
T ss_dssp ----HHHHHHHHHHT-TSTT----TSTEEEEEEBTT----TTBT-----------HHHHHHHHHHHS-
T ss_pred ----HHHHHHhcccc-ccCc----cccceEEEEecC----CCCC-----------HHHHHHHHHHhCc
Confidence 3333 333222 1110 023799998873 4433 7888888887765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=121.10 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=77.6
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.++++.+.+. .+++|+++|.+|+|||||+|++++.......+ |.........+++..+.+|||||.... .
T Consensus 3 ~~~~~~~~~~-~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~---~-- 72 (173)
T cd04154 3 TIIRKQKLKE-REMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTL---R-- 72 (173)
T ss_pred hhhhhhhcCC-CccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHH---H--
Confidence 3455555444 45999999999999999999999875322211 211222334556889999999998421 1
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.....++ .++|++++|++.+.. ++... ..++..+.... .....|+++|+||+|+..
T Consensus 73 --~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 73 --PYWRNYF--ESTDALIWVVDSSDRLRLDDC-KRELKELLQEE-RLAGATLLILANKQDLPG 129 (173)
T ss_pred --HHHHHHh--CCCCEEEEEEECCCHHHHHHH-HHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence 1112222 689999999887542 22222 22333332211 112379999999999853
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=147.07 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-----cHHHHHHHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-----NYHAIQLIKR 113 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-----~~~~~~~i~~ 113 (309)
.++|+++|.+|+|||||+|+|+|.+. .+++.+++|.+........++.++.+|||||..+.... .++. ..+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~--i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH--HHHH
Confidence 47999999999999999999999875 78888999998888788888899999999999764321 1121 2244
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++....+|++++|++.+ ... ....+...+.+. | .|+++|+||+|..+.+
T Consensus 80 ~l~~~~aD~vI~VvDat--~le-r~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 80 YILSGDADLLINVVDAS--NLE-RNLYLTLQLLEL-G----IPCIVALNMLDIAEKQ 128 (772)
T ss_pred HHhccCCCEEEEEecCC--cch-hhHHHHHHHHHc-C----CCEEEEEEchhhhhcc
Confidence 55557899999995543 332 223344444432 2 7999999999986443
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=119.01 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++.+... ....+++ +.+........++. .+.+|||||.... ......++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~- 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY- 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence 7999999999999999999998753 2222222 22222223344443 6899999997321 11122222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 73 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~~~~~~ 128 (166)
T cd04122 73 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCcCHH
Confidence 58999999988764211122234555444433222 689999999999655444433
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=118.87 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=73.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+.+. .+.+|||||..... .....++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~-- 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY-- 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--
Confidence 5899999999999999999998763 2222222233333334445554 56799999973221 1112222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.......-..+.+.+...+.. ....|+++|+||+|+..++.
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ 126 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence 6899999998875422111122344444443321 11369999999999975443
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=123.08 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.|+++|.+|||||||++++..... .....+..+.........++| ..+.||||+|...... ....++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~-- 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYY-- 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHh--
Confidence 4799999999999999999997653 222122223333334455666 5789999999843211 112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++... ..++..+.+..... .|+++|+||+|+.+..+
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~ 122 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDL-PKWMKMIDKYASED--AELLLVGNKLDCETDRE 122 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CcEEEEEECcccccccc
Confidence 689999999988653 24333 34666665554333 69999999999864443
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=146.87 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~ 118 (309)
.+|+++|.+|||||||+|+|+|...+.+++.+++|++.......+++..+.+|||||+..... ....+.+....++ .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence 689999999999999999999988777888899998888878888899999999999864221 1222222222222 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 8999999977643 4677787787777643 27999999999974
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-14 Score=119.35 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.+ ...+++.+++|........ +.++.||||||+....... ++....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 46899999999999999999999975 4455555566654433322 4689999999986533222 222223333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++|++.+. ..+..+..+.+.+.. .+ .++++++||+|+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~ 148 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-YG----IPVLIVLTKADKL 148 (196)
T ss_pred HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-cC----CcEEEEEECcccC
Confidence 442 235678888865443 355555555655533 22 6899999999986
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=119.39 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||++++.+.... ....++..........+++. .+.||||||..+.... ...++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-------~~~~~- 71 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAM-------RDQYM- 71 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHH-------hHHHh-
Confidence 489999999999999999999987532 22222222223334455563 6889999998432211 11222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++... ..+.+.+.+... ....|+++|+||+|+......+
T Consensus 72 -~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~ 126 (172)
T cd04141 72 -RCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVT 126 (172)
T ss_pred -hcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccC
Confidence 578999999888643 23222 335555555422 1237999999999986443333
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=118.52 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||.... ......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--
Confidence 589999999999999999999876322 1222222222223334444 46889999997321 11122223
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++...-...-..++..+....... .|+++|+||+|+.....
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQRE 122 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhcc
Confidence 58999999988864221122234555555444333 68999999999865443
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-14 Score=135.05 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=82.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhh-hc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~ 117 (309)
.+|+++|.+|+|||||+|+|++.+.+ +.+.+++|.++......+.+. .+.++||||+... ......+.+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHh
Confidence 58999999999999999999998864 667778888887766666654 8999999999432 1122222222222 23
Q ss_pred CCCcEEEEEEeCCccccChhHHH-HHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~-~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+.. ....+.. +.+.+... +. ...|+++|+||+|+.
T Consensus 275 ~~ADlIL~VvDaS~~-~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 275 RQATLLLHVVDAADV-RVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDML 322 (426)
T ss_pred hcCCEEEEEEeCCCc-cHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCC
Confidence 689999999776432 1222322 22333332 21 127999999999985
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=118.99 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++...... ..+.............++ ..+.+|||||....... ...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~-- 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM-------HASYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHHHh--
Confidence 5899999999999999999997653111 111111112222233444 46889999997432211 12222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++..........++..+.+... ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 589999999887542111222456666655432 26999999999983
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=121.54 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++.+.... ....++..........+++ ..+.+|||||..+...... .++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~-------~~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD-------QYM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH-------HHh
Confidence 4599999999999999999999987532 2222222222222333444 3578999999855332221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++....-..-..+...+.+.... ...|+++|+||+|+.+
T Consensus 75 --~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 75 --RTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDS 124 (189)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 5899999998875422112233455555554322 1368999999999853
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=124.20 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||+|++++....... +..+.......+..++ ..+.||||||..+..... ..++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT-------SSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH
Confidence 3599999999999999999999987642221 2222222223334444 478999999984432211 1222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.. .+......+...+... ......++++|+||+|+.....
T Consensus 84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERD 137 (211)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCc
Confidence 588999999887542 1222222233333322 2222258999999999864443
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=119.47 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|||||||+-++...+. .....+..+....+.....++ .++.||||+|..........++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy------- 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY------- 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee-------
Confidence 359999999999999999988887653 222233444555555666655 5788999999966544433322
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
++++++|+|++++...-...-+.|++.|++..+++ .-+.+|+||+|+.....+++++.... .+.
T Consensus 76 --RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~------- 139 (200)
T KOG0092|consen 76 --RGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEAQAY-----AES------- 139 (200)
T ss_pred --cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHHHHH-----HHh-------
Confidence 69999999999975433345578999998886643 34567999999987777777665321 111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+.+++-.+++ ++.+ ++++...|...++..
T Consensus 140 -------~gll~~ETSAK----Tg~N-----------v~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 140 -------QGLLFFETSAK----TGEN-----------VNEIFQAIAEKLPCS 169 (200)
T ss_pred -------cCCEEEEEecc----cccC-----------HHHHHHHHHHhccCc
Confidence 12566656553 4433 778888877777665
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=116.56 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+.++...........+ ..+.+|||||...... ....++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~-- 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY-- 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--
Confidence 589999999999999999999876422 2222222222222333334 3689999999632211 111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-..-..+++.+...... ..|+++|+||+|+....
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQR 121 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence 5789999998875432112223455566555443 37999999999986443
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=123.14 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeC--------------CeEEEEEeCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRA--------------GFTLNIVDTPGLIE 99 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~l~liDTPG~~~ 99 (309)
++|+++|.+|+|||||+|+|++.. .......+++|.........+. +..+.+|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1112222344444333333332 66899999999821
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+... ...+|++++|++... ..+..+.+.+.. ....+ .|+++|+||+|+.
T Consensus 81 ---~~~~~~~~------~~~~d~vi~VvD~~~-~~~~~~~~~~~~-~~~~~----~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 ---LIRTIIGG------AQIIDLMLLVVDATK-GIQTQTAECLVI-GEILC----KKLIVVLNKIDLI 133 (192)
T ss_pred ---HHHHHHHH------HhhCCEEEEEEECCC-CccHHHHHHHHH-HHHcC----CCEEEEEECcccC
Confidence 11111111 257899999977643 233344333332 22222 6899999999986
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=118.94 Aligned_cols=114 Identities=23% Similarity=0.225 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... .....++...........++ ..+.||||||..+....... ++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL-------SY-- 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh-------hc--
Confidence 7899999999999999999998653 22332332222332344556 46889999999543322211 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++......++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 589999999888643 233333346666655432 26999999999985
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=120.51 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
+|+|+|.+|+|||||+|+|++........ ..+.+...........+..+.+|||||..+. ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~---~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF---SS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH---HH
Confidence 58999999999999999999876432211 1223334444455566789999999998432 11
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ...++ ..+|++++|++... ..+..+.+++..+.. . ..|+++|+||+|+..
T Consensus 78 ~----~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 E----VIRGL--SVSDGAILVVDANE-GVQPQTREHLRIARE-G----GLPIIVAINKIDRVG 128 (189)
T ss_pred H----HHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcc
Confidence 1 22222 48899999977643 344455566655544 1 279999999999874
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=120.45 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|..|+|||||++++.+... .....+..+.......+..++ ..+.||||||..... .....+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~- 76 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS- 76 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh-
Confidence 58999999999999999999997642 111112223333334455566 478899999984321 1112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.++|++|+|++++.. ++... ..|++.+.+... ..|+++|+||.|+......+
T Consensus 77 -~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~ 129 (189)
T cd04121 77 -RGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVA 129 (189)
T ss_pred -cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccchhccCCC
Confidence 699999999998643 34444 467777766543 26999999999986443433
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-14 Score=116.95 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++|+++|.+|+|||||++++++... .....+..+..........++ ..+.+|||||...... ....+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~-- 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY-- 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--
Confidence 5899999999999999999998764 222222222233333445555 4678999999733211 112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++.. -..+++.+...... ..|+++|.||.|+......+
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~ 124 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPE--GVQKILIGNKADEEQKRQVG 124 (161)
T ss_pred cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECcccccccCCC
Confidence 588999999888653 2322 24466666554322 26899999999986544433
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=121.14 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.....+.++ ...+.+|||||....... ...++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~- 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-------TRVYY- 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------HHHHh-
Confidence 5899999999999999999998753 11111222222222233444 346899999998332211 12222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++... ..++..+..... .....|+++|+||+|+.+
T Consensus 72 -~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 72 -RGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred -CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 689999999887542 23222 345555544321 123369999999999864
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-14 Score=116.40 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+..+.+........++ ..+.+|||||........ ..++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~-- 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT-------SSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh--
Confidence 589999999999999999999876422 1222222222222233333 578999999974322111 2222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+|++++|++++.. ++. .-..++..+.+... ....|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFT-NLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCCCEEEEEEECCCHHHHH-hHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 589999999887542 222 22335666655533 2236899999999986
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=121.72 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+..+.+........++ ..+.+|||||..+... ....++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~-- 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY-- 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--
Confidence 589999999999999999999876421 1222222222223344444 3678999999632211 112222
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.++|++++|++++... +... ..++..+....+.. .|+++|+||+|+.+..
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i-~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENL-KFWINEINRYAREN--VIKVIVANKSDLVNNK 121 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CeEEEEEECCCCcccc
Confidence 5899999998876422 2222 33566665544333 6899999999986443
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-14 Score=120.12 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+++|.+|+|||||+|+|++........ ..+.+..........++..+.+|||||..+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 389999999999999999999632111111 12333344444556678899999999984321
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.....++ .++|++++|++... ........++..+... ..|+++|+||+|+.
T Consensus 80 ----~~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 ----GEVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 130 (194)
T ss_pred ----HHHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 1222222 58899999987754 2333334444443321 26899999999985
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=119.34 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=72.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.|+++|.+|+|||||+|+|++..... ...+++|.......... .+..+.+|||||..+. ......+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~-- 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA-- 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--
Confidence 48999999999999999999876422 22233343333333344 3678999999997321 11111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++. .........+..+.. .+ .|+++|+||+|+.
T Consensus 72 ~~~d~il~v~d~~~-~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~ 115 (168)
T cd01887 72 SLTDIAILVVAADD-GVMPQTIEAIKLAKA-AN----VPFIVALNKIDKP 115 (168)
T ss_pred hhcCEEEEEEECCC-CccHHHHHHHHHHHH-cC----CCEEEEEEceecc
Confidence 58899999977753 223344445554433 22 6999999999985
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-14 Score=115.90 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+||||++|++.+... .....+++..........++ ..+.+|||||..+.....+. ++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 70 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL-------YI- 70 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHH-------HH-
Confidence 47999999999999999999997763 22222233222233334444 47889999998544322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++....-.....+.+.+.+.... ...|+++|+||.|+.++..
T Consensus 71 -~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~ 123 (168)
T cd04177 71 -KSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQ 123 (168)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCc
Confidence 4789999998876432112223455556554332 2379999999999865443
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-14 Score=120.62 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe-eEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~-~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... ..+...++... ........+|. .+.+|||||........ ..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~- 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS-------RIYY- 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------Hhhc-
Confidence 5899999999999999999998763 22233332222 22223455555 56799999984332221 1112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++...-......+++.+.... . ..|+++|+||+|+.+
T Consensus 72 -~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~ 119 (193)
T cd04118 72 -RGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-E--HCKIYLCGTKSDLIE 119 (193)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-C--CCCEEEEEEcccccc
Confidence 58999999988754211112234666665432 2 269999999999853
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-14 Score=120.06 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||++++++... .....+..+.+.........| ..+.||||||...... ....++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------ITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------HHHHHh
Confidence 359999999999999999999998763 111222222222223334444 4688999999733211 111222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|+++... .+.. -..+++.+....+ ..|+++|+||+|+.+..
T Consensus 77 --~~a~~iilv~D~~~~~s~~~-~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 77 --RGTHGVIVVYDVTNGESFVN-VKRWLQEIEQNCD---DVCKVLVGNKNDDPERK 126 (199)
T ss_pred --CCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCC---CCCEEEEEECccccccc
Confidence 578999999887532 2222 2345666555432 26899999999986443
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=114.34 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++...... ..+..+.......... ....+.+|||||... .......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-- 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY-- 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998875332 1222222222333333 346789999999832 111222233
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++... +. ....++..+....... .|+++|+||+|+..+..
T Consensus 71 ~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~ 122 (159)
T cd00154 71 RGAHGAILVYDITNRESFE-NLDKWLKELKEYAPEN--IPIILVGNKIDLEDQRQ 122 (159)
T ss_pred cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCCCC--CcEEEEEEccccccccc
Confidence 5799999998875422 22 2233665665554222 69999999999863333
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=114.19 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=78.8
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcE
Q 021685 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (309)
++|.+|+|||||+|+|++......+..++++........... +..+.+|||||+.+................ ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence 589999999999999999876556666666666655555544 678999999999876654442222222223 58999
Q ss_pred EEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 123 il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+++|++.... .......+....... ..|+++|+||+|+..+
T Consensus 79 il~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 79 ILFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccCCh
Confidence 9999766532 222222222222221 2799999999998643
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=120.01 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=69.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccc---cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~---~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+|+++|.+|+|||||+|+|++...... .....+|.........+++..+.+|||||..+... ....++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~-- 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYY-- 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--
Confidence 589999999999999999987532100 11112233333344566788999999999843211 112222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++............++..+.+... ....|+++|+||+|+.
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP 120 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence 689999999776432100111223333322111 1227999999999974
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-14 Score=117.60 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||+|++++... .....+..+..........+| ..+.+|||||....... ...++ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~--~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI-------ASTYY--R 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh-------HHHHh--c
Confidence 799999999999999999998753 222222222233333344454 46899999998332111 11122 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++++|++++..........++..+.+..... ..|+++|+||+|+.+.
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP 121 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence 8999999988754221123345666654432221 1478999999998543
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-14 Score=115.45 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+.... ...+.+ .......... .+..+.+|||||..+.. .. ...++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~----~~~~~-- 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDR---AN----LAAEI-- 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhh---HH----Hhhhc--
Confidence 48999999999999999999987632 222222 2222222223 44578999999984321 11 22222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. .+......++..+..... ..|+++|+||+|+.+.
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDG 118 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccc
Confidence 589999999887542 122222346666655432 2799999999998643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=113.83 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.... ...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-- 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAI-------RDNYH-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHH-------HHHHh--
Confidence 5899999999999999999997653 23333333333333334443 46899999998433211 11122
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...|++++|++++... +.. -..++..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTA-TAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 5779999997775322 212 2334444444322 22379999999999864
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-14 Score=116.45 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+++.... .....+............. ....+.+|||||........+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~-- 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGY-------Y-- 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHH-------h--
Confidence 5899999999999999999996542 1111111111222222222 34578999999985543332221 1
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +. .-..+++.+.+..+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYK-NVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 5899999998876422 21 22346667766654 37999999999985
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=120.05 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||++++++.... ...+ |.........+....+.||||||......... .++ .+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~-------~~~--~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLGS-------MYC--RG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhHH-------HHh--cc
Confidence 58999999999999999999987642 1222 22222223334566899999999854322211 122 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++|+|++++.. ++..... ++..+.+..... .|+|+|+||+|+..
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~~-~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELED-RFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCC--CcEEEEEECccccc
Confidence 9999999888643 2433332 333344433332 68999999999864
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=119.08 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++++.... ....+..+.+.....+.+++ ..+.||||||... +......++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh
Confidence 3589999999999999999999987642 22222222333333444555 4789999999632 112222233
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.....+.-..++..+......+ .|+++|+||+|+.....
T Consensus 83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~ 134 (216)
T PLN03110 83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHLRS 134 (216)
T ss_pred --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccccC
Confidence 58999999988754221122345666666554333 68999999999864443
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-14 Score=117.64 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=73.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
|+|+|.+|+|||||+|++++... .. ....+...........++. .+.+|||||..+....... + ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PE-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL-------S--YPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CC-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh-------h--cCC
Confidence 68999999999999999998763 22 1222222222223344554 5899999998543222111 1 158
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.. ++......++..+.+... ..|+++|+||+|+.+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 116 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE 116 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence 9999999888642 243333456666665543 279999999999863
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-14 Score=118.86 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=71.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|++.+.... ...+..+.......... .+..+.+|||||.... . .....+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~----~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---R----PLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---H----HHHHHH
Confidence 4689999999999999999999986532 22332222222222322 4568999999997321 1 111122
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+ .++|++++|++.+.. ++... ..++..+.+.... ...|+++|+||+|+.
T Consensus 73 ~--~~~d~ii~v~D~~~~~~~~~~-~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 73 T--RCTDGIVFVVDSVDVERMEEA-KTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred h--ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 2 589999999776532 12111 2233333332221 237999999999984
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-13 Score=115.02 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||++++++... .....+++..........++. .+.+|||||....... .....+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--QLERSI------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--hHHHHH------H
Confidence 589999999999999999997542 233333332222333444554 5789999998642111 111222 4
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+|++++|++++.. ++. .-..++..+.+........|+++|+||+|+....
T Consensus 71 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 122 (165)
T cd04146 71 WADGFVLVYSITDRSSFD-EISQLKQLIREIKKRDREIPVILVGNKADLLHYR 122 (165)
T ss_pred hCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC
Confidence 78999999887642 222 2234555555543212237999999999985433
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=115.58 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+.++..... . ....++...........++ .++.||||+|..+....... ++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL-------SY-- 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-C-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchh-------hc--
Confidence 6899999999999999999998753 2 2222222222233344455 47899999998554433222 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++|+|++++.. ++......|+..+.+..+ + .|+++|+||+|+.+
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~ 119 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRD 119 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhcc
Confidence 689999999998653 243333467777765533 2 69999999999954
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-14 Score=116.66 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=92.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-|||+|+|.+|||||.|+-++.+... ..+.....+.+....+.+++|. ++.||||+|...+... +..+.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti-------t~syY- 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI-------TSSYY- 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh-------hHhhc-
Confidence 58999999999999999999988753 3333334455666666777776 6899999999443322 22222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++|+||+|++++...-...-..|++++.+..... .|.++|+||+|+.+....+.++
T Consensus 80 -R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~ 136 (205)
T KOG0084|consen 80 -RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEE 136 (205)
T ss_pred -cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHH
Confidence 69999999999976443345567899998887665 6999999999997665555554
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=112.01 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+||+++|.+|+|||||++++.+...........+. .+........ ....+.+|||||... .......++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh
Confidence 58999999999999999999864211222222222 2222222222 235899999999621 112223333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-..-..+++.+.... ...|+++|+||+|+.+..
T Consensus 74 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 74 --ESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKA 123 (164)
T ss_pred --CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence 68999999988764211112234555555442 226999999999986443
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=120.49 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=64.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|+|+|... .++..+.+|..+......+++..+.+|||||+.+...........+... .+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence 689999999999999999999864 5667778888887777788999999999999865432221111111112 2689
Q ss_pred cEEEEEEeCC
Q 021685 121 DVLLYVDRLD 130 (309)
Q Consensus 121 d~il~v~~~d 130 (309)
|++++|++.+
T Consensus 79 d~il~V~D~t 88 (233)
T cd01896 79 DLILMVLDAT 88 (233)
T ss_pred CEEEEEecCC
Confidence 9999996653
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=115.19 Aligned_cols=114 Identities=20% Similarity=0.174 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+... .....++...........++. .+.+|||||..+....... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence 5899999999999999999998763 222222222222333445554 4789999998554332211 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++......++..+... .. ..|+++|+||+|+.
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~ 117 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR 117 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence 588999999887543 2333334566666544 22 27999999999985
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=114.16 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-++|+++|.+|+|||||++++++... .....+..+.+.......+.+. .+.+|||||..+.. .....++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~- 77 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY- 77 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence 48999999999999999999997643 2222222223344444556663 57889999973221 1112223
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++.. ++. .-..++..+....... .|+++|+||+|+.+.+
T Consensus 78 -~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 78 -RSANALILTYDITCEESFR-CLPEWLREIEQYANNK--VITILVGNKIDLAERR 128 (169)
T ss_pred -cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCC--CeEEEEEECccccccc
Confidence 589999999877532 121 1134555555544322 6889999999986443
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-14 Score=132.09 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=95.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|++++|||||+|+|++...... ....+.|.+.....++.++..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 4579999999999999999999997522110 0113344444444555677889999999973
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
.+...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+++||+|+.+. ++..+.
T Consensus 87 ----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~~~-----~~~~~~ 149 (409)
T CHL00071 87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQVDD-----EELLEL 149 (409)
T ss_pred ----HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCCCH-----HHHHHH
Confidence 2222222222 48899999977653 4667777777666543 3 45 7889999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
..+.+.++++... +. ...+|++++++.
T Consensus 150 ~~~~l~~~l~~~~-~~-----~~~~~ii~~Sa~ 176 (409)
T CHL00071 150 VELEVRELLSKYD-FP-----GDDIPIVSGSAL 176 (409)
T ss_pred HHHHHHHHHHHhC-CC-----CCcceEEEcchh
Confidence 2345666665431 11 123788888764
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=119.73 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+||+++|.+|+|||||+|++++....... .++.+.+.....+.. ++ ..+.+|||||..... .....++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh
Confidence 489999999999999999999987642222 222223333333333 23 478999999973221 1112222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++.. -..+++.+.+..... ..++++|+||+|+.....
T Consensus 74 --~~~d~iilv~D~~~~~Sf~~-l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 74 --RNSVGVLLVFDITNRESFEH-VHDWLEEARSHIQPH-RPVFILVGHKCDLESQRQ 126 (211)
T ss_pred --cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC-CCeEEEEEEccccccccc
Confidence 588999999888642 2322 234566555544322 256889999999865433
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-14 Score=117.78 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+|+|.+|+|||||+|++++... . ....++............ + ..+.+|||||..+.. .+... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~-~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPL-S 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------HHHHH-h
Confidence 5899999999999999999998763 2 222222212222222332 2 368999999973221 11111 1
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++|++++|++++.. ++......++..+... .. ..|+++|+||+|+.+
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~ 119 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRK 119 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhh
Confidence 2689999999887642 2322223355555433 22 269999999999853
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=115.85 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... . ....++..........+++ ..+.||||||......... . ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~-------~--~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-P-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP-------L--CY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-C-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcch-------h--hc
Confidence 7999999999999999999998753 2 2222222222222344454 4688999999743322111 1 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+++|++|+|++++.. ++......|+..+.+..+. .|+++|+||+|+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~ 118 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLR 118 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhh
Confidence 689999999988642 2433234677777766432 6999999999985
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=116.66 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=71.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.++|+++|.+|+|||||++++...... ...++.+... ......+..+.+|||||.... . .....++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~---~----~~~~~~~-- 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKI---R----PLWRHYY-- 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHH---H----HHHHHHh--
Confidence 4699999999999999999999876532 2222222222 233456789999999998321 1 1111222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|+++... ++......+.+.+.....+ ..|+++|+||+|+.
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCc
Confidence 589999999887542 2322222222222211111 26999999999985
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=115.35 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=74.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+.++++... .....++...........++ ..+.||||||..+...... .++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 70 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY- 70 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhh-------hhc-
Confidence 37999999999999999999997652 22222222222222334455 4688999999743322111 122
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++++.. ++......++..+..... ..|+++|+||+|+.
T Consensus 71 -~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 71 -PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 589999999888642 233333346666655432 26999999999985
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=114.74 Aligned_cols=119 Identities=22% Similarity=0.232 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++++... .....+..+..........++ ..+.||||||..... .....++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR-------SLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhHHHHh
Confidence 358999999999999999999998653 222222222232233344444 367899999973211 1112222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +.. -..+...+...... ....|+++|+||+|+.
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 --RGSDCCLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred --cCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5889999998887532 322 23455555444321 1236899999999985
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=112.77 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+.+||+++|.+|+|||||++++++... .+....++ +..........+| ..+.++||+|..........+ +
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~--- 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L--- 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h---
Confidence 568999999999999999999998764 21233333 2222223344555 468899999985543322221 1
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. .....+...+.. +......|+++|+||+|+.+
T Consensus 76 ---~~~d~~llv~d~~~~---~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 76 ---AACDVACLVYDSSDP---KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ---hcCCEEEEEEeCCCH---HHHHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence 589999999776432 111112222222 21112379999999999853
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=120.07 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+|++... ..... ++............ ...+.+|||||..+....... + .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~--~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------S--Y 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------h--c
Confidence 6899999999999999999998864 11111 11112122222333 347899999998654222211 1 1
Q ss_pred CCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 118 KTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++. .++......++..+..... ..|+++|+||+|+.++.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 57899999988864 2344445556666665443 37999999999986443
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=122.13 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++... . ....++..+.....+.++| ..+.||||+|..+... ++.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~--------~~~~-~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-E-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA--------MRRL-SI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH--------HHHH-Hh
Confidence 4899999999999999999997653 2 2223333333333445555 4688999999843221 1111 11
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC-------ccccCcEEEEEecccCCCCCCCCH
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g-------~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++|+|++++... + +.-..+++.+.+... .....|+|+|+||+|+......+.
T Consensus 70 ~~ad~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 70 LTGDVFILVFSLDNRESF-EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred ccCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 5889999998887532 2 222445555544311 112379999999999864344333
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-14 Score=114.00 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||+|++++.. ......+++..........++ ..+.+|||||..+.. .....++ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence 68999999999999999999876 333344444444444455553 478999999974311 1112222 4
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+|++++|++++.......-..+...+....+. ...|+++|+||+|+..
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 789999998876422112223444455544331 2379999999999864
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=115.73 Aligned_cols=114 Identities=19% Similarity=0.127 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++... .....+..+..........++ ..+.||||+|....... ...+ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~-------~~~~--~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM-------LPLV--C 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh-------hHHH--C
Confidence 5899999999999999999998753 222222222233333445555 46899999998432111 1112 2
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++... +. .-..++..+.+..... .| ++|+||+|+.
T Consensus 71 ~~a~~iilv~D~t~~~s~~-~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLN-SIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 6899999998875422 22 2235666665543322 34 6889999985
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-13 Score=116.89 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++++.... ......+. .+.......+ ....+.+|||||.. . . +... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------~-~---~~~~-~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------M-W---TEDS-C 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc------h-H---HHhH-H
Confidence 58999999999999999999866532 11221211 1222233334 34578999999984 1 1 1111 1
Q ss_pred cC-CCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 117 NK-TIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~-~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.. ++|++++|++++... + ..-.+++..+.+.. .....|+|+|+||+|+.+...
T Consensus 69 ~~~~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~ 123 (221)
T cd04148 69 MQYQGDAFVVVYSVTDRSSF-ERASELRIQLRRNR-QLEDRPIILVGNKSDLARSRE 123 (221)
T ss_pred hhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccce
Confidence 13 899999998886432 2 22244555555542 122379999999999865443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=114.01 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=71.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++.+... ... .+|...........+..+.+|||||..+.... ....+ .++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~---~~~~~------~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQP--IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL---WKHYY------LNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCc--CCcCceeEEEEEECCEEEEEEECCCChhcchH---HHHHh------ccC
Confidence 689999999999999999998742 222 22332223345667889999999998533211 11112 589
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+++||++.+.. +++.. ..++..+.+..+ ....|+++|+||+|+.
T Consensus 68 d~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEA-HSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEeCCcHHHHHHH-HHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 999999887542 23322 233333332211 1126899999999984
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-14 Score=118.67 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||++++++..... ...++...........++ ..+.||||||..+....... + .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~-------~--~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL-------S--Y 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccc-------c--c
Confidence 379999999999999999999876422 121221112222233344 47899999998543222111 1 1
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++... +...+..++..+..... ..|+++|+||+|+..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~ 118 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE 118 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 5899999999887532 43333456777765432 269999999999854
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=114.99 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... .....+++.+........++ ..+.+|||||.......... ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL---------CY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc---------cc
Confidence 5899999999999999999987652 23333333333333444555 46789999998443222111 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 118 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRT 118 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhcc
Confidence 589999999887643 243333456666654322 269999999999853
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=114.84 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=71.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.++|+++|.+|+|||||++++..... ....++.+.. .......+..+.+|||||..... .....++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~--~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~-- 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFN--VETVTYKNISFTVWDVGGQDKIR-------PLWRHYY-- 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccc--eEEEEECCEEEEEEECCCChhhH-------HHHHHHh--
Confidence 469999999999999999999975432 2222222222 22344577899999999983321 1112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHH-HHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAIT-DNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~-~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++... .+++..+. ..... ..|+++|+||+|+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~ 127 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP 127 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence 689999999877532 23222 22333332 21111 26899999999984
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=119.55 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|||||||++++.+... . ....++........+..++ ..+.||||+|..... .+..
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~--------~~~~- 79 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD--------NVRP- 79 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-C-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH--------HHHH-
Confidence 3468999999999999999999998753 2 2222222222222344444 468999999973321 1111
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....++|++++|++++... +......|+..+.+... . .|+++|+||+|+.
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 130 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR 130 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence 1126999999999986432 32223457777776543 2 6899999999984
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=112.94 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=71.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++++...... . .|.........+.+..+.+|||||...... ....++ ..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--C--CCcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccC
Confidence 689999999999999999999863211 1 122222334556778999999999843211 112222 578
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|+++... ++... ..++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 68 NGIIFVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 999999777542 22222 223333323211 12379999999999863
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=112.31 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||++++++... .....+..+...........+ ..+.+|||||..+.. .. ....+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~---~~~~~~- 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---KS---MVQHYY- 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---Hh---hHHHhh-
Confidence 37999999999999999999998653 111112222222223344455 578999999973211 01 112222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.......-..++..+..... ....|+++|+||+|+.....
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 74 -RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred -cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcC
Confidence 689999999887642211222345555554422 12379999999999864433
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=114.69 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~-- 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQ-------KYS-- 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHH-------HHH--
Confidence 6899999999999999999998753 22222333322233344444 4578999999853221111 111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-.....+...+.+..+. ...|+++|+||+|+..++
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcC
Confidence 4789999998776422112223344445444332 236899999999986433
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=114.71 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++.+... .....++...........++. .+.||||+|...... ++. .
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~--------~~~-~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRP-L 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh--------hhh-h
Confidence 358999999999999999999998753 222222222222233444544 689999999843221 211 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++|++++|++++.. ++......|++.+.+... . .|+++|+||+|+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence 12689999999998643 233333467777776543 2 6999999999984
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=113.70 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|++.+.........+..+. ........+..+.+|||||..+.. .....++ .++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~--~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGF--NVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcccc--ceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccC
Confidence 58999999999999999999864211111122221 122334567889999999984321 1112222 589
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhC-ccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g-~~~~~~~iiV~tk~D~~ 167 (309)
|++++|++.... ++. ....++..+.+... .....|+++|+||+|+.
T Consensus 70 d~ii~v~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 70 QGIIFVIDSSDRLRLV-VVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEeCCcHHHHH-HHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999776432 121 11233333333211 11237999999999985
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-13 Score=116.49 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+|+|.+|+|||||+|++++...... ..+..+.........+++. .+.+|||||..... .....++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~- 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYY- 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh-
Confidence 48999999999999999999998754222 2222223322333445553 57899999973211 1111222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+......+.+
T Consensus 77 -~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~ 132 (210)
T PLN03108 77 -RGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE 132 (210)
T ss_pred -ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH
Confidence 5789999998875432112223455555544333 2689999999998644333333
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.4e-13 Score=109.41 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHhhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLL 116 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~---~~~~~~~i~~~~~ 116 (309)
.|+++|.+|+|||||+|+|++.. ....+...++|..... ...++ .+.++||||+.+.... .++....+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999543 2233334444443322 22233 8999999999764331 1223333344443
Q ss_pred c-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 N-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ..+++++++++.+. ..+..+..+++.+... + .|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRH-GPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence 2 36788888866543 2345556666666543 2 68999999999863
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-13 Score=128.64 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccc
Q 021685 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV 67 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~ 67 (309)
.+..++.++.+.+.+.....+.++++|.+|+|||||+|+|+|..+..+
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL~G~~Vlpt 97 (741)
T PRK09866 50 NIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPN 97 (741)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEEECCCCCCHHHHHHHHhCCccccC
Confidence 466677777777777666779999999999999999999999876555
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=118.41 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++.+...... .+|..+......+++.++.++||||.... ......++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~-- 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF-- 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 469999999999999999999998764322 12333444455667889999999998321 11112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++... ...+..+.+... ....|+++|+||+|+.
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAES-KRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHH-HHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 689999999766431 12222 222322222111 1126999999999984
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=115.76 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||++++++.... .....++.........+++ ..+.+|||||..+..... ..+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~--~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMR-------KLS--IQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHH-------HHH--hh
Confidence 6899999999999999999987632 2223333233333455566 578999999974332111 111 15
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+|++++|++++.. .+. ....++..+.+.... ...|+++|+||+|+.+
T Consensus 70 ~ad~vilv~d~~~~~s~~-~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFE-EVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 89999999887532 121 223444555554332 2379999999999864
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=113.41 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=90.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|..+|||||||++..-... .....+..+.+....++.+.|+ .+.+|||+|...+... +-.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl-------ipsY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh-------hhhhc
Confidence 458999999999999999999986542 3333333445555555555554 7899999999543322 22222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++.++++|+++....-......|++.+....|.+- ..+++|+||.||.++.+++.+|-
T Consensus 93 --Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg 151 (221)
T KOG0094|consen 93 --RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEG 151 (221)
T ss_pred --cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHH
Confidence 689999999998654333555678888887777542 56788999999987766555543
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=131.03 Aligned_cols=177 Identities=17% Similarity=0.166 Sum_probs=106.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|++++|||||+|+|+........ ..++.|.+.....++.++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 5699999999999999999999954332211 1356677777777778899
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||..+.. ......+ ..+|++++|++.+.. .+...+.+.+..+. ..+. +++++|+||+|+
T Consensus 85 ~i~liDtpG~~~~~---~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRDFV---KNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCcccch---hhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEcccc
Confidence 99999999974321 1121212 589999999877531 24444555554443 3342 469999999998
Q ss_pred CCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021685 167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
...+ .+. .....+.+++++... ++. ...+|++++|+. ++.+.+..- ...+|. +.|++.+..
T Consensus 152 ~~~~---~~~-~~~~~~~i~~~l~~~-g~~-----~~~~~ii~iSA~----~g~gi~~~~-~~~~wy~g~~L~~~l~~ 214 (425)
T PRK12317 152 VNYD---EKR-YEEVKEEVSKLLKMV-GYK-----PDDIPFIPVSAF----EGDNVVKKS-ENMPWYNGPTLLEALDN 214 (425)
T ss_pred cccc---HHH-HHHHHHHHHHHHHhh-CCC-----cCcceEEEeecc----cCCCccccc-cCCCcccHHHHHHHHhc
Confidence 6321 111 111224444444322 111 113678888763 444443322 234675 356666543
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-13 Score=113.99 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++..... . ....++...........++ ..+.||||||...... +...
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~--------l~~~- 70 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR--------LRTL- 70 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh--------hhhh-
Confidence 358999999999999999999997653 1 1222221122222233444 4688999999843221 2211
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++|++++|++++.. ++......|+..+.... . ..|+++|+||.|+.
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 120 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLR 120 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhh
Confidence 12689999999998643 24333334555555432 2 27999999999985
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=135.80 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=80.8
Q ss_pred eCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEE
Q 021685 46 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 125 (309)
Q Consensus 46 G~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~ 125 (309)
|.+|+|||||+|+++|... .+++.+++|.+.......+++.++.+|||||..+......+ ....+.++....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999864 67888898888877777888889999999999765432211 122334455568999999
Q ss_pred EEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 126 v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
|++.+ .+. ........+.+. ..|+++|+||+|+.+.
T Consensus 79 VvDat--~le-r~l~l~~ql~~~-----~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 79 VVDAS--NLE-RNLYLTLQLLEL-----GIPMILALNLVDEAEK 114 (591)
T ss_pred EecCC--cch-hhHHHHHHHHhc-----CCCEEEEEehhHHHHh
Confidence 95543 332 222333333322 2799999999998543
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-13 Score=108.41 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++.. ......++.+..........++ ..+.+|||||..+........ .
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~----- 71 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLY---Y----- 71 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHH---H-----
Confidence 3799999999999999999999987 5666666666666665566777 678999999964432211111 1
Q ss_pred cCCCcEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++.+++++++... .+......+...+...... ..|+++|+||+|+..
T Consensus 72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 345666666544321 1122222344444444322 369999999999863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=114.45 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=71.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||++++...... ...++. ..........+..+.+|||||.... . .....++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~--~~~~~~~~~~~~~~~l~D~~G~~~~---~----~~~~~~~-- 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTI--GFNVETVEYKNLKFTMWDVGGQDKL---R----PLWRHYY-- 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCcc--ccceEEEEECCEEEEEEECCCCHhH---H----HHHHHHh--
Confidence 4699999999999999999999755432 222222 2222344567789999999998321 1 1112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++.+.. ++......+.+.+..... ...|+++|+||.|+.
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLP 131 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCC
Confidence 689999999887532 233332222222222111 126899999999984
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=110.77 Aligned_cols=112 Identities=12% Similarity=0.171 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++...... ...+ |...........+..+.+|||||..+.. .....++ .++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCC
Confidence 6899999999999999999876532 2222 2112222345567899999999984321 1112222 589
Q ss_pred cEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|++++|++.+... +......+...+... . ....|+++|+||+|+.
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCC
Confidence 9999998765421 222222232222221 1 1127999999999985
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-13 Score=111.05 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=75.3
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
.+++..... +.++|+++|.+|+|||||+|++.+.......+..+ .........+..+.+|||||... .
T Consensus 4 ~~~~~~~~~-~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~-------~ 71 (173)
T cd04155 4 LLRKLRKSS-EEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRA-------I 71 (173)
T ss_pred HHHHhhccC-CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHH-------H
Confidence 344444433 47999999999999999999999975422222111 22234456788999999999732 1
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
......++ .++|++++|+++.... +..... .+..+.+... ....|+++++||+|+.
T Consensus 72 ~~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 72 RPYWRNYF--ENTDCLIYVIDSADKKRLEEAGA-ELVELLEEEK-LAGVPVLVFANKQDLA 128 (173)
T ss_pred HHHHHHHh--cCCCEEEEEEeCCCHHHHHHHHH-HHHHHHhChh-hcCCCEEEEEECCCCc
Confidence 11222222 5889999997765321 222222 2222222111 1127999999999985
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=111.24 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||++++..... ....+..+... .........+.+|||||.... ......+. .+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcce--EEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cC
Confidence 5899999999999999999975543 22222222222 234456788999999998321 11112222 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|+++||++.+.. ++......+.+.+...... ..|+++|+||.|+.
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence 9999999877532 2333322222222221111 26999999999984
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=130.97 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=111.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
...+.+.++...+.+.-+++|+|.+|+|||||+|.++..++ .+.+++.+|.......+.+.-..+.++||||+.|....
T Consensus 153 qVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 153 QVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred HHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence 34455666777788888999999999999999999998876 78889999988777777777778999999999886555
Q ss_pred cHHHHHHHH-HhhhcCCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 104 NYHAIQLIK-RFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 104 ~~~~~~~i~-~~~~~~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+...++... ..+. .=--+||||.++.... .+ .....++..|...|.. +++|+|+||+|...+.+.+.+
T Consensus 232 drN~IEmqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490|consen 232 DRNIIEMQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred hhhHHHHHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence 444433221 1111 1235689998876542 44 3456789999999975 799999999999988776555
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=110.59 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+|+++|.+|+|||||+|++++...... .+..... ...... .+..+.+|||||.... . .....++ .+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~t~~~~--~~~~~~~~~~~l~i~D~~G~~~~---~----~~~~~~~--~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IPTVGFN--VEMLQLEKHLSLTVWDVGGQEKM---R----TVWKCYL--EN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cCccCcc--eEEEEeCCceEEEEEECCCCHhH---H----HHHHHHh--cc
Confidence 589999999999999999998874322 2221111 112222 3468999999998321 1 1111222 57
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++.+.. ++...+. ++..+.+... ....|+++|+||+|+.
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQK-ELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHH-HHHHHHhchh-hcCCCEEEEEECcccc
Confidence 8999999776532 1222222 2222222111 0127999999999984
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-13 Score=116.19 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...+||+++|.+|+|||||+++++.... .....+..+.......+.. ....+.+|||||......... .+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------GY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH-------HH
Confidence 3569999999999999999999876642 1111122222222222323 345889999999854332211 11
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .++|++|+|++++... + ..-..|++.+.+... ..|+++|+||+|+.
T Consensus 83 ~--~~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 Y--IHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred c--ccccEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 1 5889999998886432 2 222456666765532 26999999999984
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=112.86 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=67.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc-----C---------CCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS-----T---------FQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~-----~---------~~~~t~~~~~~~~~~-----~g~~l~liDTPG~~~~~ 101 (309)
+|+++|.+|+|||||+|+|++....... . ..+.+.........+ .+..+.||||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999975321110 0 112222222222222 35578899999995421
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.....++ ..+|++++|++... ..+..+...+..+.. . ..|+++|+||+|+.
T Consensus 82 -------~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 -------YEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred -------HHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 1222233 47999999977653 233334333333222 1 26899999999985
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=110.21 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||++++.+... . ....++..........+++. .+.+|||||..+...... . ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~--~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-P-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------L--SY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------c--cc
Confidence 5899999999999999999998753 1 22222222222223444444 679999999844322211 1 12
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 5889999998887432 22333345555554322 26999999999985
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=120.36 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=88.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.-..|.++|.||+|||||+|+|++... .+.+.-..|-++.+....+. |..+.+.||-||.+ .......+.++..+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTLE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTLE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHHH
Confidence 347899999999999999999998875 44555566777777777766 68999999999964 344455555555552
Q ss_pred -cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 -~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|++|+|++................|.+. |-.- .|+|+|+||+|..++
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~ 319 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLED 319 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCc
Confidence 36899999996654322222222333334333 3222 799999999998643
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-14 Score=122.96 Aligned_cols=131 Identities=20% Similarity=0.266 Sum_probs=95.0
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH--HHH
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ--LIK 112 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~--~i~ 112 (309)
++...++|+|+|.+|+|||||.|.++|..++.++....+|++.....+.-+...+.++||||+..........+. .+.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 344579999999999999999999999999999999999998888888888889999999999765433322111 111
Q ss_pred Hhh-hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 113 RFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 113 ~~~-~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
... ....+|++++++++.+.+ +...-+.+..+.+... .|.++|+||.|...+.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATR-TPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK 201 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCc-CccChHHHHHHHHHhc----CCceeeccchhcchhh
Confidence 111 236899999997775422 2333444555544422 5899999999986443
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=112.89 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.++|+++|.+|+|||||++++..... ....++.+. ........+..+.+|||||... .......++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g~--~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~- 82 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF- 82 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC--ccccCCcce--eEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 3569999999999999999999986543 222222222 2234556788999999999722 111112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCcc--ccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~--~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++.. ..+.+.+.+... ...|+++|+||.|+.
T Consensus 83 -~~a~~iI~V~D~s~~~s~~~----~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 -QNTQGLIFVVDSNDRDRVVE----ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -ccCCEEEEEEeCCcHHHHHH----HHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 689999999776532 2222 222333322210 126899999999984
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=111.97 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|+|.|.... . .... ...+.+. .+|||||+.... ......+... ..++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~------~~~~--~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~--~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A------RKTQ--AVEFNDK--GDIDTPGEYFSH---PRWYHALITT--LQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C------ccce--EEEECCC--CcccCCccccCC---HHHHHHHHHH--HhcC
Confidence 6999999999999999999987521 1 1111 1222222 269999985322 2222222222 2689
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccccccc
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDI 200 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 200 (309)
|++++|++.+... +.... .+.+. +. .+|+++++||+|+... +. +.+.+.+.... +
T Consensus 66 d~il~v~d~~~~~-s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~--------~~~~~~~~~~~-~----- 120 (158)
T PRK15467 66 DMLIYVHGANDPE-SRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DV--------AATRKLLLETG-F----- 120 (158)
T ss_pred CEEEEEEeCCCcc-cccCH----HHHhc-cC--CCCeEEEEEccccCcc---cH--------HHHHHHHHHcC-C-----
Confidence 9999998775321 11111 12221 11 2689999999998421 12 22233332211 1
Q ss_pred ccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 201 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 201 ~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
..|++.+++. ++.+ +.+|++.+...+.+
T Consensus 121 ---~~p~~~~Sa~----~g~g-----------i~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 ---EEPIFELNSH----DPQS-----------VQQLVDYLASLTKQ 148 (158)
T ss_pred ---CCCEEEEECC----CccC-----------HHHHHHHHHHhchh
Confidence 1588888774 4443 67777777666544
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-13 Score=108.91 Aligned_cols=123 Identities=24% Similarity=0.263 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|..|+|||||++++.+... .....+....+........++. .+.||||+|.... . .... .++ .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~-~~~~---~~~--~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---D-SLRD---IFY--R 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---H-HHHH---HHH--T
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccccc---c-cccc---ccc--c
Confidence 799999999999999999998753 2222222224444555555554 6899999997321 1 1111 111 6
Q ss_pred CCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 119 TIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
++|++++|++++... +... ..|+..+....+.. .|+++|+||.|+.+....+.++
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~ 126 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE 126 (162)
T ss_dssp TESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH
T ss_pred cccccccccccccccccccc-cccccccccccccc--ccceeeeccccccccccchhhH
Confidence 899999999986532 4333 37888887776622 6899999999987545555543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=123.66 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=106.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Ccccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+++|+++|+.++|||||+++|++. ..... ....+.|.+.....++.++..+.++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 456799999999999999999999832 21111 11245566666666677788999999999842
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+++||+|+.+. ++..+
T Consensus 137 ------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv~~-----~~~~~ 197 (447)
T PLN03127 137 ------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVVDD-----EELLE 197 (447)
T ss_pred ------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccCCH-----HHHHH
Confidence 222222222 36999999977643 4567777777766544 3 45 6789999998632 12222
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
...+.+++++... .+. ...+|++++++... ..+.+.. ...+.+..|++.+...++
T Consensus 198 ~i~~~i~~~l~~~-~~~-----~~~vpiip~Sa~sa-~~g~n~~----~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEMELRELLSFY-KFP-----GDEIPIIRGSALSA-LQGTNDE----IGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHHHHHh-CCC-----CCcceEEEecccee-ecCCCcc----cccchHHHHHHHHHHhCC
Confidence 1123444444321 111 12378888765311 1221110 111236788888777654
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-13 Score=110.76 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=89.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.-++|+++|.+|||||+++-++..... ..+.....+.+....+...+|. .+.+|||+|...+... +..+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti-------~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI-------TTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH-------HHHHH
Confidence 459999999999999999988886652 3333333344555555666665 6799999999543322 22333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
++++.+++|+++....-.+....|++.+.+....+ .+.++|+||+|+..+..++.+
T Consensus 83 --rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 83 --RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred --hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHH
Confidence 69999999999876543355566999999986654 799999999999765554444
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-13 Score=114.28 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-ccC-CCCCCCeeEEEEeee---------------------------CC----
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-VST-FQSEGPRPVMVSRSR---------------------------AG---- 86 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-~~~-~~~~t~~~~~~~~~~---------------------------~g---- 86 (309)
++|+++|..|+|||||+.+|.+..... ... ..+.+.........+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999998762100 000 001111100000000 02
Q ss_pred --eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 87 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 87 --~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
..+.||||||.. .+...+...+ ..+|++++|++.+...........+..+.. .+. +|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEch
Confidence 679999999962 1222221111 578999999777642233333444544432 232 5799999999
Q ss_pred cCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 165 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 165 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
|+..+. ...+. .+.+++.+.... ...+|++++++. ++.+ +++|++.+...+
T Consensus 148 Dl~~~~--~~~~~----~~~i~~~~~~~~--------~~~~~i~~vSA~----~g~g-----------i~~L~~~l~~~l 198 (203)
T cd01888 148 DLVKEE--QALEN----YEQIKKFVKGTI--------AENAPIIPISAQ----LKYN-----------IDVLLEYIVKKI 198 (203)
T ss_pred hccCHH--HHHHH----HHHHHHHHhccc--------cCCCcEEEEeCC----CCCC-----------HHHHHHHHHHhC
Confidence 985321 11111 133334333210 113688888763 3333 778888777655
Q ss_pred hc
Q 021685 245 LN 246 (309)
Q Consensus 245 ~~ 246 (309)
+.
T Consensus 199 ~~ 200 (203)
T cd01888 199 PT 200 (203)
T ss_pred CC
Confidence 43
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=110.89 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
....+|+++|.+|+|||||+|++.+...... .+|..+......+++.++.++||||..+. ......++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF- 84 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 3569999999999999999999998764221 12333344556678889999999997321 11112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++.. ....+..+.+.. .....|+++|+||+|+.
T Consensus 85 -~~ad~iilV~D~~~~~s~~~-~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQE-SKEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHH-HHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 588999999776432 2221 222333332211 11237999999999985
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=108.71 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||++++.+...... .+ |.........+.+..+.+|||||..... .....++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~-- 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYY-- 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHh--
Confidence 358999999999999999999987654222 22 2222233455678899999999983211 1111222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+.. ++... ...+..+.+..+ ....|+++|+||+|+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 589999999776532 12112 222332222111 1126999999999984
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=124.23 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=94.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
....++|+++|..++|||||+++|++...... ....+.|.+.....++.++..+.+|||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 34579999999999999999999996321111 11123344444444556788999999999833
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHh
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+...+...+ ..+|++++|++.+. .......+.+..+... |. +++|+++||+|+.+. ++..+.
T Consensus 157 ------f~~~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~-----~~~~~~ 218 (478)
T PLN03126 157 ------YVKNMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD-----EELLEL 218 (478)
T ss_pred ------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH-----HHHHHH
Confidence 222222222 48899999977653 3556666666555433 42 348899999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
..+.+++++.... +. ...+|++++++.
T Consensus 219 i~~~i~~~l~~~g-~~-----~~~~~~vp~Sa~ 245 (478)
T PLN03126 219 VELEVRELLSSYE-FP-----GDDIPIISGSAL 245 (478)
T ss_pred HHHHHHHHHHhcC-CC-----cCcceEEEEEcc
Confidence 2356666665431 21 124788888764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=118.59 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=94.3
Q ss_pred hhhccccCCCChhhHHHHHHHHHHhhhc--C------------CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC
Q 021685 8 IREWMGIQQFPPATQTKLLELLGKLKQE--N------------VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73 (309)
Q Consensus 8 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~------------~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~ 73 (309)
++-.+|+++.-.+++.+|.++.+.+... . ...-+++++|.+++|||||+|.|++.+. .+.+++.+
T Consensus 18 tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FT 96 (365)
T COG1163 18 TPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFT 96 (365)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCce
Confidence 4667899999999999999888887762 1 1246899999999999999999999875 78889999
Q ss_pred CCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 74 t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
|..+....++++|..++++|+||+.++.... .+.+..+ +.+|++++|++++
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~------R~ADlIiiVld~~ 151 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA------RNADLIIIVLDVF 151 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee------ccCCEEEEEEecC
Confidence 9999999999999999999999998754333 2344444 5888888886654
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=104.83 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=68.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
|+++|.+|+|||||+|+|.+.+. .....+..+.. ......++..+.+|||||.... ......++ ..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFN--MRKVTKGNVTLKVWDLGGQPRF-------RSMWERYC--RGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcc--eEEEEECCEEEEEEECCCCHhH-------HHHHHHHH--hcCC
Confidence 78999999999999999999864 22222222222 2234456788999999997321 11222233 5889
Q ss_pred EEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++++|++++....-......+..+..... ....|+++|+||+|+..
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccC
Confidence 99999776531100111222222222111 12269999999999753
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-13 Score=106.30 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=63.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++.+.... .. .| ....+.+ .+|||||... ........+... ..++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t-----~~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KT-----QAVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cc-----eeEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcC
Confidence 7999999999999999999987631 11 11 1222333 6899999731 122223322222 3699
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|++++... +..+..+.. ..+ .|+++|+||+|+.+
T Consensus 64 d~vilv~d~~~~~-s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 64 DVIALVQSATDPE-SRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred CEEEEEecCCCCC-cCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 9999998775422 122223322 222 48999999999853
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=108.25 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=69.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
|+++|.+|+|||||++++.+... .....+..+.. .......+..+.+|||||..+..... ...+ .++|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~---~~~~------~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYW---KRYL------SGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHH---HHHH------hhCC
Confidence 79999999999999999998753 22222222222 23345567899999999985432211 1122 5899
Q ss_pred EEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 122 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 122 ~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++++|++.+... + .....++..+.... ...|+++|+||.|+.
T Consensus 70 ~ii~V~D~t~~~s~-~~~~~~l~~~~~~~---~~~piilv~NK~Dl~ 112 (164)
T cd04162 70 GLIFVVDSADSERL-PLARQELHQLLQHP---PDLPLVVLANKQDLP 112 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence 999997765421 2 12223333333221 237999999999984
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=122.67 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=104.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
..+++|+++|..++|||||+++|++... +.. ....+.|.+.....+..++..+.++||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 4579999999999999999999997321 000 0123445555445555567789999999973
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
++...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+|+||+|+.+. ++..+.
T Consensus 87 ----~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~-----~~~~~~ 149 (394)
T PRK12736 87 ----DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD-----EELLEL 149 (394)
T ss_pred ----HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch-----HHHHHH
Confidence 2222221111 57899999977653 3556677777665543 3 45 7889999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021685 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
..+.+++++.... +. ...+|++++|+. ++... ...| +..|++.+...++
T Consensus 150 i~~~i~~~l~~~~-~~-----~~~~~ii~vSa~----~g~~~------~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VEMEVRELLSEYD-FP-----GDDIPVIRGSAL----KALEG------DPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHhC-CC-----cCCccEEEeecc----ccccC------CCcchhhHHHHHHHHHHhCC
Confidence 2345555554321 11 123789988874 22111 1235 5677887777654
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=108.53 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc---ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVT---VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~---~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
||+|+|.+|+|||||+++|++..... .....+.+..............+.++|++|........... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------ 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------
Confidence 79999999999999999999887531 11111222221122222333358899999984432222211 2
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
..+|++++|++++... +.. -.+++.++....+.....|+++|.||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEY-LSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHH-HHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHH-HHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 4789999998876422 211 1234444444432222379999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=107.26 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+|+|.+|+|||||+|.+...... .....+...........++. .+.+|||||..+....... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---------~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---------SY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---------hc
Confidence 58999999999999999999855421 11112222222223344443 5789999998543322211 11
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +......++..+...... .|+++|+||+|+.
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 5889999998886532 333334567777655432 7999999999984
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=116.80 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+|+|.+|+|||||++++.+... . ..+.++........+.+++. .+.||||+|..... .++. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~-~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-P-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRP-LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhH-Hhc
Confidence 7999999999999999999998653 2 22222222222333445554 68899999984321 1211 122
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++++.. ++......|...+.... .. .|+++|+||+|+.
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~ 118 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR 118 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence 699999999888643 23333334554444433 22 6999999999985
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=109.29 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=70.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|++.+.. .....+ |..........++..+.+|||||.... ......++ .++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVAP--TVGFTPTKLRLDKYEVCIFDLGGGANF-------RGIWVNYY--AEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--CccccC--cccceEEEEEECCEEEEEEECCCcHHH-------HHHHHHHH--cCC
Confidence 58999999999999999999862 211111 222223355667889999999997321 11112233 689
Q ss_pred cEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+++||++..... +. .-..++..+..... ....|+++|+||.|+.
T Consensus 68 ~~ii~V~D~s~~~s~~-~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 68 HGLVFVVDSSDDDRVQ-EVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCchhHHH-HHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 9999997765321 21 12334444433211 1237999999999984
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=121.56 Aligned_cols=176 Identities=13% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Cccc----c-----cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT----V-----STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~----~-----~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
....++|+++|..++|||||+|+|++. ..+. . ....+.|.+.....++.++..+.|+||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--
Confidence 446799999999999999999999962 1100 0 0123444454444555677789999999983
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
.+...+...+ ..+|++++|++.+. .....+.+.+..+.. .| .| +++|+||+|+.+. ++..+
T Consensus 87 -----~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~~~-----~~~~~ 148 (396)
T PRK12735 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMVDD-----EELLE 148 (396)
T ss_pred -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEEEecCCcch-----HHHHH
Confidence 2222222222 58899999977653 355566666655543 23 45 4568999998632 11111
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
...+.+++++.... +. ...+|++++++. ++.+.. ....| ++.|++.+...++
T Consensus 149 ~~~~ei~~~l~~~~-~~-----~~~~~ii~~Sa~----~g~n~~----~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 149 LVEMEVRELLSKYD-FP-----GDDTPIIRGSAL----KALEGD----DDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHHcC-CC-----cCceeEEecchh----ccccCC----CCCcccccHHHHHHHHHhcCC
Confidence 11234555554321 11 113788888764 222211 11245 4678888777654
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=126.68 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.|+++|.+++|||||+|+|+|.... ......+.|.+.....+..++..+.+|||||.. .+...+....
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~-- 71 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG-- 71 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence 47999999999999999999986421 112223445555555566777899999999972 2222222222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+. .......+.+..+. ..|. +++++|+||+|+.
T Consensus 72 ~~aD~aILVVDa~~-G~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 72 GGIDAALLVVDADE-GVMTQTGEHLAVLD-LLGI---PHTIVVITKADRV 116 (581)
T ss_pred ccCCEEEEEEECCC-CCcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence 58999999988764 34445555554443 3342 2499999999986
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=110.25 Aligned_cols=112 Identities=23% Similarity=0.352 Sum_probs=71.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--------------------------------------
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-------------------------------------- 83 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-------------------------------------- 83 (309)
|+|+|..++|||||||+|+|.+..+++.. .+|..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999986555443 333322211110
Q ss_pred ------------------eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHH
Q 021685 84 ------------------RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAI 145 (309)
Q Consensus 84 ------------------~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l 145 (309)
.....+.||||||+.+...... +.+.+++ ..+|++|||.+.+. .++..+..++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQM 153 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHH
Confidence 0112378999999976443332 3344444 79999999976653 3555566665555
Q ss_pred HHHhCccccCcEEEEEecc
Q 021685 146 TDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 146 ~~~~g~~~~~~~iiV~tk~ 164 (309)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44332 4699999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=112.62 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-------CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-------~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
+||+++|.+|+|||||++++.+... .....+..+.........+ ....+.||||+|..+. ..++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~ 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHH
Confidence 5899999999999999999998753 2122222111111112222 1246899999998432 1121
Q ss_pred -HhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC-----------------ccccCcEEEEEecccCCCCC
Q 021685 113 -RFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 113 -~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g-----------------~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+. .++|++|+|++++... +... ..|+..+....+ .....|+++|+||.|+.+..
T Consensus 72 ~~~y--r~ad~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 72 AVFY--NQVNGIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHHh--CcCCEEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 122 6899999999986532 3332 467777755321 11236999999999986443
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=130.17 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+..|+++|.+++|||||+++|.+.++ ..+...+.|.+...+.+.+++..++||||||..++.. ... +..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~---m~~----rga-- 358 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA---MRA----RGA-- 358 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccchh---HHH----hhh--
Confidence 568999999999999999999998765 2334445555555566777888999999999865421 111 111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+. .......+.+..+.. .+ .|+|+|+||+|+.
T Consensus 359 ~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~ 402 (787)
T PRK05306 359 QVTDIVVLVVAADD-GVMPQTIEAINHAKA-AG----VPIIVAINKIDKP 402 (787)
T ss_pred hhCCEEEEEEECCC-CCCHhHHHHHHHHHh-cC----CcEEEEEECcccc
Confidence 57899999988764 344444454444332 22 6899999999984
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-12 Score=118.20 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=105.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|..++|||||+++|++... ... ....+.|.+.....++.++..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 4579999999999999999999997310 000 0123445555555555677889999999983
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE-EEEecccCCCCCCCCHHHHHHh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i-iV~tk~D~~~~~~~~~~~~~~~ 180 (309)
.+...+...+ ..+|++++|++.+. .+...+.+.+..+... + .|.+ +++||+|+.+. ++..+.
T Consensus 87 ----~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~-----~~~~~~ 149 (396)
T PRK00049 87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD-----EELLEL 149 (396)
T ss_pred ----HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch-----HHHHHH
Confidence 2222222222 58999999977653 4667777777666543 3 4654 68999998631 112222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021685 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
....+++++.... +. ...+|++++++.. +.+. ....+| ++.|++.+...++
T Consensus 150 ~~~~i~~~l~~~~-~~-----~~~~~iv~iSa~~----g~~~----~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEMEVRELLSKYD-FP-----GDDTPIIRGSALK----ALEG----DDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHhcC-CC-----ccCCcEEEeeccc----ccCC----CCcccccccHHHHHHHHHhcCC
Confidence 2245555554321 11 1247888887742 1110 112346 3678887776543
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-13 Score=112.43 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=92.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-|||+++|.+|+|||-|+-+++..+. .....+..+.+..+....++|+ +..||||+|..........+.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY-------- 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY-------- 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh--------
Confidence 58999999999999999988886653 3333344455666666777776 568999999965443332211
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++..+|+|++++.+.--+.-.+|+++|+.++..+ ..+++|.||+||.....+..++
T Consensus 85 -rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te~ 141 (222)
T KOG0087|consen 85 -RGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTED 141 (222)
T ss_pred -cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchhh
Confidence 69999999999976443346677899998887665 5899999999997655555544
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=101.99 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++.... ...+++ .........++| ..+.+|||+|..+ .. ..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~---~~------ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQ---FA------ 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hh---HH------
Confidence 58999999999999999998876421 112221 222233455667 4688999999842 11 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.. ++... ..++..+....+. ...|+++|.||.|+.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 478999999988653 24333 3577777665431 226899999999974
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-12 Score=106.99 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=69.8
Q ss_pred ceEEEEEeCCCCCHHHHHH-HHhCCCcc---cccCCCCCCC--eeEEEE--------eeeCC--eEEEEEeCCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVN-SIIGEKAV---TVSTFQSEGP--RPVMVS--------RSRAG--FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN-~l~g~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~l~liDTPG~~~~~~ 102 (309)
.+||+++|.+|||||||++ .+.+.... ......++.. ...... ..++| ..+.||||||..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4899999999999999996 44433210 0111111110 111111 12344 47899999998431
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. +. ....++|++++|++++.. ++......|+..+.+... . .|+++|+||+|+..
T Consensus 80 ~--------~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~ 134 (195)
T cd01873 80 D--------RR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRY 134 (195)
T ss_pred h--------hc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccc
Confidence 1 11 122699999999998643 233333346777765532 2 68999999999853
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=114.87 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|++|+|||||+|+|+.... ..+. ...+.|.......+.+++..+.+|||||..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 589999999999999999974211 0111 112344455556677889999999999985421
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+....+ ..+|++++|++... .....+..+++.+.+. + +|+++++||+|+.
T Consensus 79 -~~~~~~l------~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~ 129 (270)
T cd01886 79 -IEVERSL------RVLDGAVAVFDAVA-GVEPQTETVWRQADRY-N----VPRIAFVNKMDRT 129 (270)
T ss_pred -HHHHHHH------HHcCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCCC
Confidence 2222222 47899999976543 3556666777666543 2 6899999999985
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=106.87 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=73.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC--------------CCCCC------------------------eeEEEEe
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------------QSEGP------------------------RPVMVSR 82 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~--------------~~~t~------------------------~~~~~~~ 82 (309)
||+++|..++|||||++++..... ..+.. .+.|. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985321 00000 00000 0000122
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
+..+..+.++||||..+ +.......+....+|++++|++++. .+...+.+++..+... + .|+++|+|
T Consensus 80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-~----ip~ivvvN 146 (224)
T cd04165 80 EKSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-N----IPVFVVVT 146 (224)
T ss_pred eeCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence 34577899999999732 2222222232247899999977653 4678888888877654 3 68999999
Q ss_pred cccCC
Q 021685 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99986
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=114.38 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=88.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE-EEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT-LNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~-l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
.|.+||-||+|||||+|+|..... .+.+++.||..|......+++.. ++|-|.||+.+....+. +.++-+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi---- 272 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI---- 272 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH----
Confidence 578999999999999999998875 78999999999988888777664 99999999998766554 344444
Q ss_pred hcCCCcEEEEEEeCCcccc-Ch--hHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRV-DN--LDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~-~~--~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+++.++||+++..... ++ .-..+..++...-..-..+|.++|.||+|+.
T Consensus 273 --ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 273 --ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred --HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 58899999977764311 22 1222333333222223347899999999984
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=119.72 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~---------~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|..++|||||+++|++. ..+. .....+.|.+.....++.++..+.||||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 35699999999999999999999843 1111 011245566665555666777899999999842
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+...+.... ..+|++++|++++. .....+.+.+..+... +. +++|+|+||+|+.+. ++..+..
T Consensus 88 -----f~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~-----~~~~~~~ 150 (394)
T TIGR00485 88 -----YVKNMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD-----EELLELV 150 (394)
T ss_pred -----HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH-----HHHHHHH
Confidence 212121111 47899999977653 3556666666665443 31 345578999998632 2222222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
.+.++++++... + ....+|++++|+.
T Consensus 151 ~~~i~~~l~~~~-~-----~~~~~~ii~vSa~ 176 (394)
T TIGR00485 151 EMEVRELLSEYD-F-----PGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHHHHHhcC-C-----CccCccEEECccc
Confidence 345555554321 1 1123788888763
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-12 Score=123.68 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=97.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+-|+++|..++|||||+|+|+|.+.. ......+.|.+....... .++..+.||||||..+ +...+...+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~- 72 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGV- 72 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHh-
Confidence 35899999999999999999986421 111223444333222222 2567899999999822 222221112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++++|++.+. .+.+.+.+.+..+.. .|. .++++|+||+|+.+++ ......+.+++.+... .+
T Consensus 73 -~~~D~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~~------~~~~v~~ei~~~l~~~-~~- 138 (614)
T PRK10512 73 -GGIDHALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRVDEA------RIAEVRRQVKAVLREY-GF- 138 (614)
T ss_pred -hcCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCHH------HHHHHHHHHHHHHHhc-CC-
Confidence 58999999988764 455667777765543 342 3468999999986321 1111234455554322 11
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
...|++++|+. ++.+ ++.|.+.+.....
T Consensus 139 ------~~~~ii~VSA~----tG~g-----------I~~L~~~L~~~~~ 166 (614)
T PRK10512 139 ------AEAKLFVTAAT----EGRG-----------IDALREHLLQLPE 166 (614)
T ss_pred ------CCCcEEEEeCC----CCCC-----------CHHHHHHHHHhhc
Confidence 12688888774 3333 5677777665443
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=107.51 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=70.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeeeC----------CeEEEEEeCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRA----------GFTLNIVDTP 95 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------g~~l~liDTP 95 (309)
+|+++|..++|||||+++|+.......... .+.|.........+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999986532111110 111222211222222 5689999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|..+.. .+....+ ..+|++++|+++.. .........++..... + .|+++|+||+|+.
T Consensus 82 G~~~f~---~~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS---SEVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CccccH---HHHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 996532 2333333 58899999987754 3555555555554432 2 6899999999974
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-12 Score=124.10 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.+|+++|.+|+|||||+|+|.+.... ....++.|.+.......+.+. .+.||||||..++... ..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~-------r~rg-- 155 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM-------RARG-- 155 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH-------HHhh--
Confidence 5689999999999999999999987653 333445555555555556444 8999999998543211 1111
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. .......+.+..+.. .+ .|+++++||+|+.
T Consensus 156 a~~aDiaILVVda~d-gv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~ 200 (587)
T TIGR00487 156 AKVTDIVVLVVAADD-GVMPQTIEAISHAKA-AN----VPIIVAINKIDKP 200 (587)
T ss_pred hccCCEEEEEEECCC-CCCHhHHHHHHHHHH-cC----CCEEEEEECcccc
Confidence 158899999987764 233444444443322 22 6899999999984
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-12 Score=120.51 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=76.1
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC--------------------------------CCCCCCeeEEEEe
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------------------------------FQSEGPRPVMVSR 82 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--------------------------------~~~~t~~~~~~~~ 82 (309)
+....++|+++|..++|||||+++|+......... ..+.|.+.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 34567999999999999999999999654322110 0112333334445
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
+.++..+.||||||..+ +...+...+ ..+|++++|++.+. .+...+.+.+..+ ...+. +++|+|+|
T Consensus 103 ~~~~~~i~~iDTPGh~~-------f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l~-~~lg~---~~iIvvvN 168 (474)
T PRK05124 103 STEKRKFIIADTPGHEQ-------YTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFIA-TLLGI---KHLVVAVN 168 (474)
T ss_pred ccCCcEEEEEECCCcHH-------HHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHHH-HHhCC---CceEEEEE
Confidence 56778999999999632 211121112 68999999977653 3444444433333 33342 57999999
Q ss_pred cccCCC
Q 021685 163 HAQLSL 168 (309)
Q Consensus 163 k~D~~~ 168 (309)
|+|+..
T Consensus 169 KiD~~~ 174 (474)
T PRK05124 169 KMDLVD 174 (474)
T ss_pred eecccc
Confidence 999863
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-12 Score=110.95 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccc--c---------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTV--S---------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~--~---------~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|++|+|||||+++|+....... + + ..+.+.........+++.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 589999999999999999986432111 0 0 01112223345566788899999999995432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhH
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~ 183 (309)
......+ ..+|++++|++... ........+++.+.+. + .|+++++||+|+... ++++.+ +
T Consensus 79 -~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a---~~~~~~----~ 138 (237)
T cd04168 79 -AEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA---DLEKVY----Q 138 (237)
T ss_pred -HHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC---CHHHHH----H
Confidence 2222233 47899999977643 3445555666655443 3 689999999998532 344443 4
Q ss_pred HHHHhhc
Q 021685 184 ALLKFVS 190 (309)
Q Consensus 184 ~l~~~i~ 190 (309)
.+++.+.
T Consensus 139 ~i~~~~~ 145 (237)
T cd04168 139 EIKEKLS 145 (237)
T ss_pred HHHHHHC
Confidence 4555554
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=110.82 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc------------------------c------cCCCCCCCeeEEEEeeeCCeEEE
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVT------------------------V------STFQSEGPRPVMVSRSRAGFTLN 90 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~------~~~~~~t~~~~~~~~~~~g~~l~ 90 (309)
+|+++|..|+|||||+.+|+...... . ....+.|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999997321100 0 01234566666677788999999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc------ccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY------RVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 91 liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~------~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
+|||||+.+. .......+ ..+|++++|++.... .........+... ...+. +|+++|+||+
T Consensus 81 liDtpG~~~~---~~~~~~~~------~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRDF---VPNMITGA------SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM 147 (219)
T ss_pred EEECCChHHH---HHHHHHHh------hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence 9999997321 11222222 579999999776542 1222333333333 23332 5899999999
Q ss_pred cCCC
Q 021685 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|+..
T Consensus 148 Dl~~ 151 (219)
T cd01883 148 DDVT 151 (219)
T ss_pred cccc
Confidence 9863
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=127.05 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccC----------CCC----------------------CCCeeEEEEeee
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----------FQS----------------------EGPRPVMVSRSR 84 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----------~~~----------------------~t~~~~~~~~~~ 84 (309)
.+.++|+++|.+++|||||+|+|+.......+. ..+ .|.+.....++.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 356999999999999999999999765433211 122 233333345556
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
++..+.|+||||..+ +...+... ...+|++++|++.+. .+...+.+.+..+.. .+. +++++|+||+
T Consensus 102 ~~~~~~liDtPG~~~-------f~~~~~~~--~~~aD~~llVvda~~-g~~~~t~e~~~~~~~-~~~---~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------YTRNMVTG--ASTADLAIILVDARK-GVLTQTRRHSFIASL-LGI---RHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH-------HHHHHHHH--HHhCCEEEEEEECCC-CccccCHHHHHHHHH-hCC---CeEEEEEEec
Confidence 778899999999732 11111111 258999999977653 344444444444333 232 5789999999
Q ss_pred cCCC
Q 021685 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9863
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=102.06 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=84.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+-++.....-.. .....+.+.......++|. ++.||||+|...+......++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~-~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy-------- 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDL-HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY-------- 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCcc-CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh--------
Confidence 59999999999999999999887643111 1111234555556666665 689999999976655554433
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++..+|+|++++.. .+... -.|++++.-..-. ...-.++|.||+|......++.+|
T Consensus 82 -RgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reE 139 (209)
T KOG0080|consen 82 -RGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREE 139 (209)
T ss_pred -ccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHH
Confidence 689999999998753 25444 4577777655432 223457899999964444444443
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-12 Score=116.38 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CCCeeEE---EEeee--
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSR-- 84 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~----~~~-----------~~~~~~~---~t~~~~~---~~~~~-- 84 (309)
+.+.+.++....+.|.|+|+.++|||||||++.+. +.. .+++.++ +|.+|.. ...++
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 45556666666799999999999999999999998 665 5667777 6777765 22222
Q ss_pred C---CeEEEEEeCCCCCCCCCCcHHHHHH----------------------HHHhhhcCCCcEEEEEEeCCc-------c
Q 021685 85 A---GFTLNIVDTPGLIEGGYVNYHAIQL----------------------IKRFLLNKTIDVLLYVDRLDV-------Y 132 (309)
Q Consensus 85 ~---g~~l~liDTPG~~~~~~~~~~~~~~----------------------i~~~~~~~~~d~il~v~~~d~-------~ 132 (309)
. ..++.+|||+|+.+.+.....-.+. .++.+. .++++.|+|.- |+ .
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtT-Dgsi~dI~Re 163 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTT-DGTITDIPRE 163 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEc-CCCccccccc
Confidence 1 2489999999998754332211111 122221 37888888831 33 2
Q ss_pred ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 133 RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 133 ~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
...+.+.++++.|++.- +|+++|+|++|-
T Consensus 164 ~y~~aEe~~i~eLk~~~-----kPfiivlN~~dp 192 (492)
T TIGR02836 164 DYVEAEERVIEELKELN-----KPFIILLNSTHP 192 (492)
T ss_pred cchHHHHHHHHHHHhcC-----CCEEEEEECcCC
Confidence 35677888998888763 899999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=97.36 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++|+++|..|+|||.|+..++..- ++.+.....+.+....+.+++|. ++.||||+|...+...... +.
T Consensus 8 fkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqs-------yy-- 77 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQS-------YY-- 77 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHH-------Hh--
Confidence 899999999999999999998763 34444444445555556666665 6899999999544333222 22
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+.+|++++|+++......+--.+|+.++.+..... .-.|+|.||.|+.+.
T Consensus 78 rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 78 RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADR 127 (213)
T ss_pred hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhh
Confidence 57899999998876433344567999998876543 356899999998643
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=114.06 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---------------CeEEEEEeCCCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---------------GFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---------------g~~l~liDTPG~~~~~~ 102 (309)
..+||+|+|..|||||||++.+.+... .....+..+.......+.++ ...+.||||+|......
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 469999999999999999999998753 21112222222222222322 24689999999843322
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc----------cccCcEEEEEecccCCCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~----------~~~~~~iiV~tk~D~~~~ 169 (309)
.. ..++ .++|++|+|++++.......-..|++.+...... ....++++|.||+|+...
T Consensus 99 L~-------~~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CR-------SLFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hh-------HHhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 11 1122 6899999998886533222334577777665320 112689999999998643
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=118.68 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--------------------------C------CCCCCCeeEEEEeeeCCe
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~g~ 87 (309)
++|+++|+.++|||||+++|+........ + ..+.|.+.....++.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 68999999999999999999854321111 0 112244455555667788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.|+||||..+ +...+...+ ..+|++|+|++.+. .+...+.+.+..+.. .+. +++++|+||+|+.
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence 999999999732 222222212 58999999977653 344555554444433 332 5789999999986
Q ss_pred CCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021685 168 LPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
..+ ++.++...+.+.++++.. .+ ..+|++++|+. ++.+... +.+..+|. +.|++.+..
T Consensus 147 ~~~----~~~~~~i~~~~~~~~~~~-~~-------~~~~iipiSA~----~g~ni~~-~~~~~~wy~g~tL~~~L~~ 206 (406)
T TIGR02034 147 DYD----EEVFENIKKDYLAFAEQL-GF-------RDVTFIPLSAL----KGDNVVS-RSESMPWYSGPTLLEILET 206 (406)
T ss_pred cch----HHHHHHHHHHHHHHHHHc-CC-------CCccEEEeecc----cCCCCcc-cccCCCccchhHHHHHHHh
Confidence 322 222222234444444322 11 13678888763 3333322 22334573 445554443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=117.91 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|..++|||||+++|+....... ....+.|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3579999999999999999999985321110 0122445555566667788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
..+.||||||..+ +...+...+ ..+|++++|++.+... ........+. +.+.++. .++++|+||+
T Consensus 85 ~~i~iiDtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~---~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGI---NQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCC---CeEEEEEECh
Confidence 8999999999732 222222121 5799999998876432 1122222222 2233332 5799999999
Q ss_pred cCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021685 165 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 165 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
|+...+. +.+ +...+.++++++... +. ...+|++.+|+. ++.+..... ....|. +.|++.+..
T Consensus 152 Dl~~~~~---~~~-~~~~~ei~~~~~~~g-~~-----~~~~~~i~iSA~----~g~ni~~~~-~~~~w~~g~~l~~~l~~ 216 (426)
T TIGR00483 152 DSVNYDE---EEF-EAIKKEVSNLIKKVG-YN-----PDTVPFIPISAW----NGDNVIKKS-ENTPWYKGKTLLEALDA 216 (426)
T ss_pred hccCccH---HHH-HHHHHHHHHHHHHcC-CC-----cccceEEEeecc----ccccccccc-cCCccccchHHHHHHhc
Confidence 9863222 211 112244555554321 11 123677777763 333333221 123564 456666654
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=98.87 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021685 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
++|.+|+|||||+|++++.... ......+........... .+..+.+|||||..+..... ..+. ..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCC
Confidence 5899999999999999998642 111112222222222222 35689999999985432211 1111 6899
Q ss_pred EEEEEEeCCccccChhHHHHH--HHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 122 VLLYVDRLDVYRVDNLDKQIT--RAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l--~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++++|+++.... +..+.... ..+.. ......|+++|+||+|+....
T Consensus 71 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 71 GIILVYDVTDRE-SFENVKEWLLLILIN--KEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred EEEEEEECcCHH-HHHHHHHHHHHHHHh--hccCCCcEEEEEecccccccc
Confidence 999997775421 11111111 11111 122337999999999986443
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=101.14 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...|||+++|.+|+|||||.|.+...+. ........+.+..+..+.++++ .+.||||+|...+....- .|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~-------aF 78 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV-------AF 78 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH-HHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc-------ce
Confidence 3569999999999999999999998753 2223333345555555666665 679999999954433221 11
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC--ccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~ 167 (309)
.+++|+|++|++++... +...+ .|-+++..... ....-|+|+++||.|..
T Consensus 79 --YRgaDcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 79 --YRGADCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred --ecCCceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 26999999999987543 43333 34444333333 12335899999999984
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=121.80 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=75.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--ee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
.+.+|+|+|.+|+|||||+++|.+.... .+..++.|.....+.. .. .+..+.||||||..++ .....+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-------~~mr~r 314 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-------SSMRSR 314 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-------HHHHHH
Confidence 5679999999999999999999987642 2333344443323332 22 3578999999998321 111222
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+ ..+|++++|++++. +......+.+..+.. . ..|+|+|+||+|+.
T Consensus 315 g~--~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~-~----~iPiIVViNKiDl~ 360 (742)
T CHL00189 315 GA--NVTDIAILIIAADD-GVKPQTIEAINYIQA-A----NVPIIVAINKIDKA 360 (742)
T ss_pred HH--HHCCEEEEEEECcC-CCChhhHHHHHHHHh-c----CceEEEEEECCCcc
Confidence 22 58899999987754 344444555554432 2 26999999999985
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=99.96 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=85.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+|++++|.+|||||.|+-.++....-++.+ ...+.+.....++++++ ++.||||+|... ..+..+.+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syY- 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYY- 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHh-
Confidence 4899999999999999999999886433332 22223333334445554 789999999932 223333344
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++-.+|+|++++...-...-..||..+++...++ .-++++.||+|+....+++.+|-
T Consensus 77 -r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEG 134 (216)
T KOG0098|consen 77 -RGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEG 134 (216)
T ss_pred -ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHH
Confidence 58888999999986432244456888887775443 46788899999976666555543
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=108.38 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCC------CCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~------~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+|+++|.+|+|||||+|+|+....... .+.. +.+.......+++++.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3799999999999999999985422111 1100 111223344567789999999999985
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .+....+ ..+|++++|++... .+......+++.... .+ .|+++++||+|..
T Consensus 83 df~---~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS---EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVCRL-RG----IPIITFINKLDRE 136 (267)
T ss_pred HHH---HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHHHh-cC----CCEEEEEECCccC
Confidence 422 2222223 47899999977643 344444445444332 22 6899999999974
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=117.96 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=104.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
+|+++|..++|||||+++|+........ ...+.|.......+.+++..+.||||||..++. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence 7999999999999999999953211100 112344455556677889999999999985432 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHH
Q 021685 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 185 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l 185 (309)
+....+ ..+|++++|++... ........++..+... + .|+++|+||+|+... ..++.. +.+
T Consensus 80 ev~~~l------~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~a---~~~~v~----~ei 140 (594)
T TIGR01394 80 EVERVL------GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-G----LKPIVVINKIDRPSA---RPDEVV----DEV 140 (594)
T ss_pred HHHHHH------HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCCc---CHHHHH----HHH
Confidence 222222 57899999977643 3445566666665542 2 689999999997422 233333 233
Q ss_pred HHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 186 LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+++.... ... ....+|++++++........ +.....-+..|++.|...++..
T Consensus 141 ~~l~~~~g-~~~---e~l~~pvl~~SA~~g~~~~~-----~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 141 FDLFAELG-ADD---EQLDFPIVYASGRAGWASLD-----LDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHHHhhc-ccc---ccccCcEEechhhcCccccc-----CcccccCHHHHHHHHHHhCCCC
Confidence 33332111 000 11237888887742211110 0111123788888888887654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=104.80 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||++.|.+.....+ .++++......... ..+..+.||||||.... .... ..++ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~~----~~~~--~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDKL----LETL--K 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHHH----HHHH--h
Confidence 689999999999999999998753221 22221111111111 23668999999998432 1122 2222 3
Q ss_pred CC-cEEEEEEeCCccc--cChhHHHHHHH-HHHHhCccccCcEEEEEecccCCC
Q 021685 119 TI-DVLLYVDRLDVYR--VDNLDKQITRA-ITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~-d~il~v~~~d~~~--~~~~d~~~l~~-l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+ ++++||++..... +... ..++.. +..........|+++|.||+|+..
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~-~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDV-AEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ccCCEEEEEEECccchhHHHHH-HHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 44 9999997765321 1111 122222 211111111279999999999864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=110.46 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~---------------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|.+|+|||||+|+|++..... .+.. .+.+.........+++..+.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 58999999999999999998643211 0000 012223334456678889999999998432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.......+ ..+|++++|++.+. ........+++.+... + .|.++|+||+|..
T Consensus 78 ~~~~~~~l------~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~ 129 (268)
T cd04170 78 VGETRAAL------RAADAALVVVSAQS-GVEVGTEKLWEFADEA-G----IPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHH------HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCccC
Confidence 11222222 47899999977653 2334444555544332 2 6899999999975
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=118.21 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=70.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~l~liDTPG~~~~ 100 (309)
+.-|+++|++|+|||||+|+|.+..... ....+.|.+........ ....+.||||||..++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3569999999999999999999986422 11122232211111110 1124899999998432
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.. ....+. ..+|++++|++++. .+...+.+.+..+... + .|+++|+||+|+.
T Consensus 83 ~~-------l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 83 TN-------LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-K----TPFVVAANKIDRI 134 (590)
T ss_pred HH-------HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 11 111122 58999999988764 3455566666555432 2 6899999999985
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=104.91 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc---C---------------CCCCCCeeEEEEeee-----CCeEEEEEeCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---T---------------FQSEGPRPVMVSRSR-----AGFTLNIVDTPGL 97 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~---~---------------~~~~t~~~~~~~~~~-----~g~~l~liDTPG~ 97 (309)
+|+++|..|+|||||+++|++....... . ..+.+.........+ ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975432110 0 011111111222222 2357999999999
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+. .......+ ..+|++++|++... ..+..+..+++.+... + .|+++|+||+|..
T Consensus 82 ~~f---~~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF---MDEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAILE-G----LPIVLVINKIDRL 136 (213)
T ss_pred cch---HHHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 643 12222222 48899999977643 2334444444443321 1 6999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=104.93 Aligned_cols=124 Identities=23% Similarity=0.376 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE-------------------------------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------------------------------------- 80 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------------------------------------- 80 (309)
...+|+|+|.+|+||||++++|+|......+. ..+|+.+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 44689999999999999999999975322221 1112211110
Q ss_pred ------------Eeee---CCeEEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-
Q 021685 81 ------------SRSR---AGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD- 138 (309)
Q Consensus 81 ------------~~~~---~g~~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d- 138 (309)
.+++ +..+++||||||+..... ....+.+.+..++. ...+++|+|++... .+...+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhH
Confidence 0111 113589999999964311 11233334445553 24468888865532 355555
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++.+.+... + +++++|+||+|..++
T Consensus 182 l~ia~~ld~~-~----~rti~ViTK~D~~~~ 207 (240)
T smart00053 182 LKLAKEVDPQ-G----ERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHc-C----CcEEEEEECCCCCCc
Confidence 4666666543 2 799999999998744
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=101.47 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...+||+++|.+|+|||||+++++.... .....++.........+ ..+...+.+|||||..+..... ..+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~ 78 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGY 78 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence 4569999999999999999986654432 11111221222222222 2234588999999974322111 111
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. ..+|++++|++++... + ..-..++..+.+... . .|+++|+||+|+.
T Consensus 79 ~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 79 Y--IKGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE-N--IPIVLVGNKVDVK 126 (215)
T ss_pred h--ccCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-C--CCEEEEEECccCc
Confidence 2 4789999998875421 2 222345555554432 2 6889999999984
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=117.07 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+++|..++|||||+++|+......... ..+.|.......+.+++..+.+|||||..++..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 589999999999999999999742211111 122333344455667889999999999965432
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHH
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~ 184 (309)
.....+ ..+|++++|++... .....+...+..+... + .|.++|+||+|.... .+++.++ .
T Consensus 84 -~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a---~~~~vl~----e 143 (607)
T PRK10218 84 -EVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA---RPDWVVD----Q 143 (607)
T ss_pred -HHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC---chhHHHH----H
Confidence 222222 58999999977643 3445555565554432 3 688999999997422 3444332 3
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+++++.... ... ....+|++++++. ++.+... +.....-+..|++.|...++..
T Consensus 144 i~~l~~~l~-~~~---~~~~~PVi~~SA~----~G~~~~~-~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 144 VFDLFVNLD-ATD---EQLDFPIVYASAL----NGIAGLD-HEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHHHhccC-ccc---cccCCCEEEeEhh----cCcccCC-ccccccchHHHHHHHHHhCCCC
Confidence 333332211 110 1124789888763 2221100 0000112567777777777644
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=103.34 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=78.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.++... ....+|+++|..|+||||+++.|.......+. +|.......+.+.+..+.++|.+|........+.
T Consensus 4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~----pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~- 77 (175)
T PF00025_consen 4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETI----PTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKS- 77 (175)
T ss_dssp HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE----EESSEEEEEEEETTEEEEEEEESSSGGGGGGGGG-
T ss_pred HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccC----cccccccceeeeCcEEEEEEecccccccccccee-
Confidence 45555543 35799999999999999999999976532211 2333344556778999999999997332222222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
+. .++|+++||++.... ++. +..+.+.+.+.. ....|+++++||.|..
T Consensus 78 ------y~--~~~~~iIfVvDssd~~~l~----e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 78 ------YF--QNADGIIFVVDSSDPERLQ----EAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ------GH--TTESEEEEEEETTGGGGHH----HHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ------ec--cccceeEEEEecccceeec----ccccchhhhcchhhcccceEEEEecccccc
Confidence 11 589999999765432 222 222233333321 1237999999999974
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=101.80 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=83.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i-~~~~~ 116 (309)
++++|+|.+|+|||||+-.+... .+..+.....+.+....+..++|. ++.||||+|... ++.+ ..+.
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr--------Frtitstyy- 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER--------FRTITSTYY- 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH--------HHHHHHHHc-
Confidence 57789999999999999777655 333333333444555555556664 789999999832 2222 2222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
+++|++++|++++.......-.+|++++...+.. .|-++|.||.|..+..-.
T Consensus 79 -rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV 130 (198)
T KOG0079|consen 79 -RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVV 130 (198)
T ss_pred -cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceee
Confidence 6999999999987544346678899999888764 688999999998544433
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=104.96 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=86.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...+|+++|.+|+|||+++..+++.. .+..+.++..+.......++|. .+.|+||+|..+.....+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~--------- 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDL--------- 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHH---------
Confidence 35899999999999999999999876 3444444444555555555554 6789999995443322222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.....|++++|++++...-.+....+.+.|.+..+.. +.|+++|+||+|+.....++.++
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHH
Confidence 1257899999999976432244455666665544433 26999999999997655655554
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=97.01 Aligned_cols=127 Identities=24% Similarity=0.255 Sum_probs=85.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
+..++++.+.+.+ +++|+++|..|+||||+++.+.+++...+++ |.-....+.++.+..+.+||.-|........
T Consensus 3 ~lsilrk~k~ker-E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W 77 (185)
T KOG0073|consen 3 LLSILRKQKLKER-EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYW 77 (185)
T ss_pred HHHHHHHHHhhhh-eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchhHHHH
Confidence 3456777777666 7999999999999999999999998543333 4555666788899999999999983322222
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..| . ...|+++||++... .++ +.....++.+... ..-+..+++++.||.|+.
T Consensus 78 ~nY-------f--estdglIwvvDssD~~r~-~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 78 KNY-------F--ESTDGLIWVVDSSDRMRM-QECKQELTELLVE-ERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHh-------h--hccCeEEEEEECchHHHH-HHHHHHHHHHHhh-hhhcCCceEEEEecCcCc
Confidence 122 1 47899999966522 122 2223333333221 112236899999999984
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=113.16 Aligned_cols=169 Identities=18% Similarity=0.157 Sum_probs=92.1
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCc--ccccCCCCCCCeeEE----------------EEee--e---C-----C
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPVM----------------VSRS--R---A-----G 86 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~--~~~~~~~~~t~~~~~----------------~~~~--~---~-----g 86 (309)
+...+++|+++|..++|||||+.+|.+... .......+.|..... +... . + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 344679999999999999999999976411 010001112211100 0000 0 0 2
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||..+ ....++.. ...+|++++|++.+...........+..+.. .+. +++++|+||+|+
T Consensus 85 ~~i~liDtPG~~~---f~~~~~~~------~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHET---LMATMLSG------AALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHH---HHHHHHHH------HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 5799999999632 11111111 1478999999776532113444455544432 231 478999999998
Q ss_pred CCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
.+++. ..+ ..+.+++++... . ...+|++++|+. ++.+ ++.|++.+...++
T Consensus 152 ~~~~~--~~~----~~~~i~~~l~~~--~------~~~~~ii~vSA~----~g~g-----------I~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKER--ALE----NYEQIKEFVKGT--V------AENAPIIPVSAL----HKVN-----------IDALIEAIEEEIP 201 (411)
T ss_pred ccchh--HHH----HHHHHHHHhccc--c------CCCCeEEEEECC----CCcC-----------HHHHHHHHHHhCC
Confidence 64321 111 113344444321 0 113688888763 3332 6788887776554
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=105.84 Aligned_cols=119 Identities=23% Similarity=0.307 Sum_probs=87.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCC----CcHHHHHHHHHhhh
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFLL 116 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~----~~~~~~~~i~~~~~ 116 (309)
|.+||-||+|||||+|++...+. .+.+++.||..|....... .+..+++-|.||+.+... ...+.++.|
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI----- 235 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI----- 235 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH-----
Confidence 67899999999999999998875 7889999999887766664 556799999999987543 334555555
Q ss_pred cCCCcEEEEEEeCCccc-cCh-hH-HHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDN-LD-KQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~-~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++.++++|++++... .++ .+ ..+..+|...-..-..+|.++|+||+|+.
T Consensus 236 -ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 236 -ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred -HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 5788999998776432 122 22 33444555443344558999999999964
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=106.55 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|..|+|||||+|++.+........ +..+........... ...+.+|||+|+.+.. .....+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y~- 75 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEYY- 75 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHHh-
Confidence 3899999999999999999999886432222 121222112122222 4578999999994322 1111222
Q ss_pred cCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+++++++|++... .++...-..+.+.+....+.. .++++|.||+|+...
T Consensus 76 -~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 76 -RGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred -cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 68999999977754 345555667777777765422 699999999999643
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=120.50 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|+|+|+.|+|||||+|+|+...... +.+ ..+.|.......+.+++..+.+|||||+.+...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 589999999999999999998532211 111 234455556667788999999999999965321
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+....+ ..+|++++|++... .....+..++..+.+. + .|+++|+||+|+..
T Consensus 91 ---~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~ 141 (689)
T TIGR00484 91 ---EVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRY-E----VPRIAFVNKMDKTG 141 (689)
T ss_pred ---HHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 222233 47899999977643 3555666666665443 2 68999999999863
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=103.74 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=69.0
Q ss_pred EeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcE
Q 021685 45 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (309)
+|.+|||||||+++++.... .....+..+.......+..+ ..++.||||||......... .++ .++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~-------~~~--~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRD-------GYY--IQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------HHh--cCCCE
Confidence 69999999999999996542 21111221122222333333 45899999999854322211 122 68999
Q ss_pred EEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 123 LLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 123 il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+++|++++.. ++.. -..|+..+.+... ..|+++|+||+|+.
T Consensus 71 ~ilV~D~t~~~S~~~-i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 71 AIIMFDVTARVTYKN-VPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCChHHHHH-HHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 9999888643 2322 2357777776542 26999999999984
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-11 Score=111.28 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeE----------------EEEee----------eCCeEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPV----------------MVSRS----------RAGFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~----------------~~~~~----------~~g~~l 89 (309)
.+++|+++|..++|||||+++|.+..... .....+.|.... .+... ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 56999999999999999999998752100 000001111000 00000 124689
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+|||||..+ +...+.... ..+|++++|++.+.........+.+..+ ...+. +++++|+||+|+.+.
T Consensus 83 ~liDtPGh~~-------f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHH-------HHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccCCH
Confidence 9999999732 222222111 4789999997776421134444555444 33332 579999999998632
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+ ......+.+++++... + ....|++++++. ++.+ ++.|++.+...++
T Consensus 150 ~------~~~~~~~~i~~~l~~~--~------~~~~~ii~vSA~----~g~g-----------i~~L~e~L~~~l~ 196 (406)
T TIGR03680 150 E------KALENYEEIKEFVKGT--V------AENAPIIPVSAL----HNAN-----------IDALLEAIEKFIP 196 (406)
T ss_pred H------HHHHHHHHHHhhhhhc--c------cCCCeEEEEECC----CCCC-----------hHHHHHHHHHhCC
Confidence 1 1111123344443321 0 113688888763 3333 6777777776544
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=115.25 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--------C------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------T------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~---~g--~~l~liDTPG~~~~ 100 (309)
-+|+++|..++|||||+++|+........ + ..+.|.........+ ++ ..+.||||||..++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999865321111 0 113343333333433 22 57899999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .. +.+++ ..+|++++|++.+. ..+..+...+....+. ..|+++|+||+|+.
T Consensus 84 ~---~~----v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 S---YE----VSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALEN-----DLEIIPVINKIDLP 135 (595)
T ss_pred H---HH----HHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 2 12 22222 47899999977643 3334443333222221 26899999999984
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=119.69 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHh---CCCcc--ccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSII---GEKAV--TVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~---g~~~~--~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
.+|+|+|+.|+|||||+|+|+ |.... .++ ...+.|.+.....+.+.+..++++||||+.++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 599999999999999999997 32110 111 12345556656677888999999999998432
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. .+....+ ..+|++++|++... .+...+..++..+.+. + .|.++++||+|+..
T Consensus 89 ~-~ev~~al------~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 T-IEVERSL------RVLDGAVAVFDAVG-GVEPQSETVWRQADKY-K----VPRIAFVNKMDRTG 141 (693)
T ss_pred H-HHHHHHH------HHcCEEEEEEECCC-CcchhhHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 1 1222233 47799999976543 4677788887776654 3 68899999999863
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-11 Score=113.43 Aligned_cols=180 Identities=14% Similarity=0.193 Sum_probs=100.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|..++|||||+.+|+...... +.+ ..+.|.+.....+++++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 357999999999999999999998521100 000 12234444445567788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc------ChhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.|+||||..+ +...+...+ ..+|++++|++.+..-+ ..+..+.+..+. ..|. +++|++
T Consensus 85 ~~i~lIDtPGh~~-------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~gi---~~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHRD-------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLGV---KQMIVC 151 (446)
T ss_pred eEEEEEECCChHH-------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcCC---CeEEEE
Confidence 8999999999742 122222222 58999999977653211 234455554443 3342 458899
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHH
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~ 238 (309)
+||+|.... +++.+ ..+...+.+++.+... ++. ...+|++++++. ++.+.... .+...|. +.|++
T Consensus 152 vNKmD~~~~-~~~~~-~~~~i~~~i~~~l~~~-g~~-----~~~~~~ipiSa~----~g~ni~~~-~~~~~Wy~G~tL~~ 218 (446)
T PTZ00141 152 INKMDDKTV-NYSQE-RYDEIKKEVSAYLKKV-GYN-----PEKVPFIPISGW----QGDNMIEK-SDNMPWYKGPTLLE 218 (446)
T ss_pred EEccccccc-hhhHH-HHHHHHHHHHHHHHhc-CCC-----cccceEEEeecc----cCCCcccC-CCCCcccchHHHHH
Confidence 999994211 11111 2222234555555432 121 123788888763 33332211 1223563 45666
Q ss_pred HHHH
Q 021685 239 TITE 242 (309)
Q Consensus 239 ~i~~ 242 (309)
.+..
T Consensus 219 ~l~~ 222 (446)
T PTZ00141 219 ALDT 222 (446)
T ss_pred HHhC
Confidence 6554
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=114.24 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE--EEEeee----CC------------eEEEEEeCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV--MVSRSR----AG------------FTLNIVDTPGLIE 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~--~~~~~~----~g------------~~l~liDTPG~~~ 99 (309)
.+..|+++|++|+|||||+|+|.+.......+ .+.|.+.. ...... .+ ..++||||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45689999999999999999999875322111 11111110 000000 00 1278999999854
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+... ..+.. ..+|++++|++.+. .+.......+..+... + .|+++++||+|+.
T Consensus 84 f~~~-------~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNL-------RKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-K----TPFVVAANKIDRI 136 (586)
T ss_pred HHHH-------HHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence 3211 11111 47899999987754 3556666666555432 2 6899999999985
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=100.48 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+..|+++|.+|+|||||+|+|++... ...+...++ .. .....+..+.++||||.. ...++.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~-i~~~~~~~i~~vDtPg~~------~~~l~~a---- 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----IT-VVTGKKRRLTFIECPNDI------NAMIDIA---- 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EE-EEecCCceEEEEeCCchH------HHHHHHH----
Confidence 4578899999999999999999998621 112211111 11 122367789999999852 2333333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~ 168 (309)
..+|+++++++... .+...+..++..+... | .| +++|+||+|+..
T Consensus 102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~ 147 (225)
T cd01882 102 --KVADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFK 147 (225)
T ss_pred --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCC
Confidence 47899999966542 4566677777666543 3 45 455999999863
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-11 Score=119.49 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=81.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.+|+|+|+.++|||||+|+|+.... ..+. ...+.|.+.....+.+++..+.++||||+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 46899999999999999999975311 0111 13345666666777889999999999998431
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+....+ ..+|++++|++... .+...+..++..+.+. + .|.++++||+|+..
T Consensus 87 --~~e~~~al------~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 --TIEVERSL------RVLDGAVAVFDAVS-GVEPQSETVWRQADKY-G----VPRIVFVNKMDRIG 139 (691)
T ss_pred --HHHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 11222222 47799999977543 4667777777776553 3 68999999999863
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=101.12 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=48.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
.+++|+++|.+|+|||||+|+|++.....+++.+++|+....+.. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 468999999999999999999999988889999998876554432 335899999996
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=112.27 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=67.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~ 99 (309)
...++|+++|.||+|||||+|+|++... .+++++++|.++......+.+ ..+.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4579999999999999999999998874 888999999888877765542 2489999999976
Q ss_pred CCCCcH----HHHHHHHHhhhcCCCcEEEEEEeC
Q 021685 100 GGYVNY----HAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 100 ~~~~~~----~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
.....+ +++..+ +.+|++++|++.
T Consensus 98 ga~~g~gLg~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHH------HHCCEEEEEEeC
Confidence 443322 223333 589999999775
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=109.85 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~l~liDTPG~~~~~~ 102 (309)
++|+++|.+|+|||||+|+|++.. ..+++++++|.++......+.+. .+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999998 58889999998887666555442 489999999976443
Q ss_pred CcHHHHHHHHHhhh-cCCCcEEEEEEeC
Q 021685 103 VNYHAIQLIKRFLL-NKTIDVLLYVDRL 129 (309)
Q Consensus 103 ~~~~~~~~i~~~~~-~~~~d~il~v~~~ 129 (309)
..+.. -.+++. .+.+|++++|++.
T Consensus 82 ~g~gl---g~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGL---GNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHH---HHHHHHHHHhCCEEEEEEeC
Confidence 32211 122332 2699999999776
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=101.10 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=49.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..++++++|.+|+|||||+|+|+|...+.+++.+++|+....+.. +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 358999999999999999999999998899999999887665543 246899999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=107.40 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=63.9
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCc
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~l~liDTPG~~~~~~~~ 104 (309)
|+++|.+|+|||||+|+|++.+. .+++++++|.++......+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57999999999999999999987 7888999998887766665543 48999999998654333
Q ss_pred HHHHHHHHHhhh-cCCCcEEEEEEeC
Q 021685 105 YHAIQLIKRFLL-NKTIDVLLYVDRL 129 (309)
Q Consensus 105 ~~~~~~i~~~~~-~~~~d~il~v~~~ 129 (309)
+.. ..+++. .+.+|++++|++.
T Consensus 80 ~gl---g~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGL---GNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHH---HHHHHHHHHhCCEEEEEEeC
Confidence 221 122332 2689999999775
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-11 Score=94.38 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|++|+|||||+++|.|.+... ...+ ...+.+ .+|||||=+- .+......+... ...+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--------~KTq--~i~~~~---~~IDTPGEyi---E~~~~y~aLi~t--a~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--------KKTQ--AIEYYD---NTIDTPGEYI---ENPRFYHALIVT--AQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--------Cccc--eeEecc---cEEECChhhe---eCHHHHHHHHHH--HhhC
Confidence 79999999999999999999976311 1111 122222 3599999632 222233333222 2589
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+|+++.+.+... ..--- .+...| .+|+|-|+||+|+.
T Consensus 65 d~V~ll~dat~~~-~~~pP----~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 65 DVVLLLQDATEPR-SVFPP----GFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred CEEEEEecCCCCC-ccCCc----hhhccc----CCCEEEEEECccCc
Confidence 9999997665421 11111 122333 37999999999986
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=109.84 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC--CcccccCCC-------------------CCCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE--KAVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~--~~~~~~~~~-------------------~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
+..+|+|+|.+|+|||||+++|+-. .....+... +.+.......+.+++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4579999999999999999998632 111111110 1122233345677889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+. .......+ ..+|++|+|++... .+......+++.... .+ .|+++++||+|+.
T Consensus 90 ~~df---~~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDF---SEDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRL-RD----TPIFTFMNKLDRD 145 (527)
T ss_pred hhhH---HHHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHh-cC----CCEEEEEECcccc
Confidence 9432 22233333 48999999977643 355555555544332 22 6999999999974
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=104.18 Aligned_cols=180 Identities=12% Similarity=0.161 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g 86 (309)
..+++|+++|..++|||||+-+|+-..... ..+ ..+.|.+.....++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 457999999999999999998887321100 000 11233444445566778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccC------hhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~------~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++++||||..+ +...+...+ ..+|++++|++.+...+. ....+.+.. ....|. +++|++
T Consensus 85 ~~i~liDtPGh~d-------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHRD-------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMICC 151 (447)
T ss_pred EEEEEEECCCHHH-------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEEE
Confidence 8999999999832 222222222 589999999877542222 222333322 223342 468999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHH
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~ 238 (309)
+||+|+.+ .+++.+.| ....+.++.++.+. ++. ...+|++++++. ++.+.....+ ..+|. +.|++
T Consensus 152 vNKmD~~~-~~~~~~~~-~~i~~ei~~~l~~~-g~~-----~~~~~~ipiSa~----~G~ni~~~~~-~~~Wy~g~tLl~ 218 (447)
T PLN00043 152 CNKMDATT-PKYSKARY-DEIVKEVSSYLKKV-GYN-----PDKIPFVPISGF----EGDNMIERST-NLDWYKGPTLLE 218 (447)
T ss_pred EEcccCCc-hhhhHHHH-HHHHHHHHHHHHHc-CCC-----cccceEEEEecc----cccccccccc-CCcccchHHHHH
Confidence 99999751 12221222 22234555555432 121 123788888763 4444322111 24674 36777
Q ss_pred HHHH
Q 021685 239 TITE 242 (309)
Q Consensus 239 ~i~~ 242 (309)
.+..
T Consensus 219 ~l~~ 222 (447)
T PLN00043 219 ALDQ 222 (447)
T ss_pred HHhh
Confidence 6654
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-10 Score=110.47 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccc--------c------CCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTV--------S------TFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~--------~------~~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~~ 100 (309)
-+|+++|..++|||||+++|+....... . ...+.|.........+. +..+.||||||..++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 4899999999999999999986321110 0 01233433333344332 467999999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .+ +.+++ ..+|++|+|++... .....+...+..+.. .+ .|+++|+||+|+.
T Consensus 88 ~---~~----v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~-~~----lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S---YE----VSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALE-ND----LEIIPVLNKIDLP 139 (600)
T ss_pred H---HH----HHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHH-CC----CCEEEEEECCCCC
Confidence 2 12 22222 47899999977643 344444433333322 12 6899999999984
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-11 Score=97.19 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=49.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
...+++++|.+|+||||++|+|++.....++..+++|........ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 568999999999999999999999887778888899888776543 246999999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=106.56 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
..++++++|.+|+||||++|+|++...+.+++.+++|+..+.... +..+.++||||+......+++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcHH
Confidence 468999999999999999999999988888999998887654332 346899999999877655544
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=98.96 Aligned_cols=173 Identities=21% Similarity=0.208 Sum_probs=95.2
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCCC-----------------CCeeEEEE
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQSE-----------------GPRPVMVS 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~~-----------------t~~~~~~~ 81 (309)
..++++.+.+....++.|.|.|.+|+|||||++.|... ++..+...+++ ..++..+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~ 121 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFI 121 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEE
Confidence 34566666655557899999999999999999986532 22111111111 01111111
Q ss_pred e----------------------eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHH
Q 021685 82 R----------------------SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 82 ~----------------------~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
. ...|..+.|+||+|.+.... .+ . ..+|+++++.... ...+.
T Consensus 122 r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---~i---~------~~aD~vlvv~~p~----~gd~i 185 (332)
T PRK09435 122 RPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSET---AV---A------GMVDFFLLLQLPG----AGDEL 185 (332)
T ss_pred EecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchh---HH---H------HhCCEEEEEecCC----chHHH
Confidence 1 12467899999999963221 11 1 3689999994422 12233
Q ss_pred HHHHH-HHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021685 140 QITRA-ITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 140 ~~l~~-l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
+.++. +.+. .-++|+||+|+.+... .+.. ...+++.+... .........|++++++. +
T Consensus 186 q~~k~gi~E~-------aDIiVVNKaDl~~~~~--a~~~----~~el~~~L~l~----~~~~~~w~~pVi~vSA~----~ 244 (332)
T PRK09435 186 QGIKKGIMEL-------ADLIVINKADGDNKTA--ARRA----AAEYRSALRLL----RPKDPGWQPPVLTCSAL----E 244 (332)
T ss_pred HHHHhhhhhh-------hheEEeehhcccchhH--HHHH----HHHHHHHHhcc----cccccCCCCCEEEEECC----C
Confidence 33332 2222 3489999999863321 2222 13344444321 10001123689888773 4
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 219 NENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+.+ +++|++.|.....
T Consensus 245 g~G-----------IdeL~~~I~~~~~ 260 (332)
T PRK09435 245 GEG-----------IDEIWQAIEDHRA 260 (332)
T ss_pred CCC-----------HHHHHHHHHHHHH
Confidence 433 7888888877764
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=104.95 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=53.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
..++++++|.+|+|||||+|+|++.....+++.+++|+..+.... +..+.++||||+......+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence 468999999999999999999999988888899998887765443 23689999999976554443
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=97.48 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhhhc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~~~ 117 (309)
||+++|+.|+||||..+.+++.-...-...-+.|.+....... .+...+.+||.||..+.-... .+....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if------ 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF------ 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH------
Confidence 7999999999999999999986432222223445555444444 355699999999996542221 1111122
Q ss_pred CCCcEEEEEEeCCccccChhHHH-HHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~-~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++++++||+++....+ ..+.. +...+......+...++-+.+.|+|+.+
T Consensus 75 ~~v~~LIyV~D~qs~~~-~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDY-DEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp CTESEEEEEEETT-STC-HHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred hccCEEEEEEEcccccH-HHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 68999999977753233 23322 2222222222222357888899999864
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-10 Score=107.98 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=73.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC--cccccCC-------------------CCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF-------------------QSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~--~~~~~~~-------------------~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
+--+|+|+|.+|+|||||+++|+... ....+.. .+.+.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34699999999999999999997321 1111110 01122223345677889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+.. .+....+ ..+|++++|++... .+......+++.... .+ .|+++++||+|..
T Consensus 89 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFS---EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRL-RD----TPIFTFINKLDRD 144 (526)
T ss_pred chhhH---HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHh-cC----CCEEEEEECCccc
Confidence 85432 2222333 47899999977643 344445555544332 22 7999999999974
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=101.05 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=111.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+|+.....|||||+..|+.+....-.. ..+.|.-.......++|..|+|+||||..|++..-
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 379999999999999999999764322111 11223334445667899999999999998887766
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHH
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~ 184 (309)
+..++ -+|.||++++... ..-++.+-.++...+. | .+-|+|+||+|-. ....++.+.+ .
T Consensus 86 ERvl~---------MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~-g----L~PIVVvNKiDrp---~Arp~~Vvd~---v 144 (603)
T COG1217 86 ERVLS---------MVDGVLLLVDASE-GPMPQTRFVLKKALAL-G----LKPIVVINKIDRP---DARPDEVVDE---V 144 (603)
T ss_pred hhhhh---------hcceEEEEEEccc-CCCCchhhhHHHHHHc-C----CCcEEEEeCCCCC---CCCHHHHHHH---H
Confidence 55554 4488888865533 3345555555443333 2 4778899999963 2245555542 2
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+--++.-.+... .-.+|+++.++........ ..+..+.+..|++.|+.+++.-.
T Consensus 145 fDLf~~L~A~de-----QLdFPivYAS~~~G~a~~~-----~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 145 FDLFVELGATDE-----QLDFPIVYASARNGTASLD-----PEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HHHHHHhCCChh-----hCCCcEEEeeccCceeccC-----ccccccchhHHHHHHHHhCCCCC
Confidence 222222221111 1247999998754433321 12223348899999999998654
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=105.98 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=71.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCC--CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQENV--NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g 86 (309)
....|...+..++..-..+.++.+...+. ..++++|+|-+||||||+||+|+|...+.+++.|+.|...+......
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-- 177 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-- 177 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC--
Confidence 33455556665555555567777777653 35899999999999999999999999999999999998877655443
Q ss_pred eEEEEEeCCCCCCCCCCc
Q 021685 87 FTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~ 104 (309)
.+.++||||+.-....+
T Consensus 178 -~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 178 -GIYLLDTPGIIPPKFDD 194 (322)
T ss_pred -CeEEecCCCcCCCCccc
Confidence 38999999998766555
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.4e-11 Score=99.85 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCc--------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKA--------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~--------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
.+.++++.+.+.-....+++++|.+|+|||||||+|++... ..++..+++|+.+....... .+.|||||
T Consensus 112 gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtP 188 (190)
T cd01855 112 GVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTP 188 (190)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCc
Confidence 34455555554333557999999999999999999998643 34566778888877655532 58999999
Q ss_pred CC
Q 021685 96 GL 97 (309)
Q Consensus 96 G~ 97 (309)
|+
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 96
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.5e-10 Score=88.36 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=79.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+|++++|..|.|||.|+..+..... .-......+.+.....+.++|+ ++.||||+|... ..+..+.+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-------FRSVtRsYY- 79 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-------FRSVTRSYY- 79 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh-cccccceeeeeecceeeeecCcEEEEEEeecccHHH-------HHHHHHHHh-
Confidence 37999999999999999998886542 1111111222333333445554 789999999832 223334444
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++-..++|++++.....+.-..|+..++...... .-++++.||.|+.+..+++..+.
T Consensus 80 -RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEA 137 (214)
T KOG0086|consen 80 -RGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEA 137 (214)
T ss_pred -ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHH
Confidence 68888899988865322233445666665554433 34667789999976666655543
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=105.59 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=90.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe-eEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~-~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..+.+||+++|..|+||||||-+|+.++. +...|..-.. .+.....-...+..|+||..- ........+.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~---~~~~~~l~~Ei--- 77 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSD---SDDRLCLRKEI--- 77 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhc--cccccccCCccccCCccCcCcCceEEEecccc---cchhHHHHHHH---
Confidence 34679999999999999999999998863 3333221110 011122234557899999833 22222334445
Q ss_pred hhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 115 LLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++|++.+|+.+|. +.++.....|+-.+++.+|.....|+|+|.||+|+......+.+.
T Consensus 78 ---rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 78 ---RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred ---hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 58999999998876 457777788999999999988889999999999986554443343
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=105.16 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=94.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC--CCCCCCe----------------eEEE-Eee---------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPR----------------PVMV-SRS--------------- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--~~~~t~~----------------~~~~-~~~--------------- 83 (309)
..++|.++|...+|||||+.+|+|........ ..+.|.+ +..+ ...
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 46999999999999999999999864321111 0011100 0000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 84 -~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
.-...+.|+||||.. .+...+...+ ..+|++++|++++......+..+.+. +.+..|. +++|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEEe
Confidence 012468999999962 2222222112 58899999977764223333344443 3334443 57999999
Q ss_pred cccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHH
Q 021685 163 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242 (309)
Q Consensus 163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~ 242 (309)
|+|+.+++ ......+.+++++.... ....|++++|+. ++.+ ++.|++.+..
T Consensus 180 KiDlv~~~------~~~~~~~ei~~~l~~~~--------~~~~~iipVSA~----~G~n-----------I~~Ll~~L~~ 230 (460)
T PTZ00327 180 KIDLVKEA------QAQDQYEEIRNFVKGTI--------ADNAPIIPISAQ----LKYN-----------IDVVLEYICT 230 (460)
T ss_pred cccccCHH------HHHHHHHHHHHHHHhhc--------cCCCeEEEeeCC----CCCC-----------HHHHHHHHHh
Confidence 99986321 11222244555544321 123789988874 3332 6788888776
Q ss_pred HHhc
Q 021685 243 VVLN 246 (309)
Q Consensus 243 ~~~~ 246 (309)
.++.
T Consensus 231 ~lp~ 234 (460)
T PTZ00327 231 QIPI 234 (460)
T ss_pred hCCC
Confidence 5554
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=87.66 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+|+|.+.+|||||+-+.++... ...-....+.+....+. ...-.++.||||+|... ++.+. ...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSF-t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiT-Tay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTIT-TAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccc-ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHH-HHH
Confidence 47999999999999999999998763 21111122222222221 12234789999999943 12221 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.+++++++++++++...--..-..+...++.....+ -++|+|.||||+-.+.-.+.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e 147 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHE 147 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHH
Confidence 269999999988865332233445555555544333 589999999998655444433
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=92.23 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=82.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.|+|+++|..-+|||||+-+...... ...+....-.........+++ ..+.||||+|...+-.... +.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF-n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP---------IY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF-NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP---------IY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc-chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc---------eE
Confidence 59999999999999999977775432 211111000111122222333 3789999999954322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++.+.+|+|++++.......-+.|+.+|+...|.. .-++||.||+|+.+...++.++
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHH
Confidence 268899999999865332355678999999999977 4789999999996555544443
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=110.81 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=75.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccc--cc---------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVT--VS---------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~---------~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
..+|+|+|..|+|||||+++|+...... .+ + ..+.|.........+++..+.+|||||..+..
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 4799999999999999999998532110 00 0 11223333344566788999999999985422
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
......+ ..+|++++|++.+. .........++.+... + .|+++|+||+|+.
T Consensus 88 ---~~~~~~l------~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 138 (687)
T PRK13351 88 ---GEVERSL------RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-G----IPRLIFINKMDRV 138 (687)
T ss_pred ---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCCCC
Confidence 1222222 57899999977653 3444555555554432 2 6899999999985
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=99.98 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=103.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g 86 (309)
...++++++|...+|||||+-.|+=.-... .....+.|.+.....++-+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 357999999999999999998887221000 00011223333344445566
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++|+|+||..|+ ..+.+.. ...+|+.++|++..... ...+.++.+ .|.+..|- ..+|++
T Consensus 85 ~~~tIiDaPGHrdF---vknmItG------asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRDF---VKNMITG------ASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQLIVA 151 (428)
T ss_pred ceEEEeeCCchHHH---HHHhhcc------hhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ceEEEE
Confidence 68999999997432 1111111 15889999997775432 223334333 45555564 689999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc--hHHHHH
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w--~~~L~~ 238 (309)
+||+|+.+=++..+++.+ ..+..+++.+ ++.. ..++++++++ +.+.+..+.- +...| -+.|++
T Consensus 152 vNKMD~v~wde~rf~ei~----~~v~~l~k~~-G~~~-----~~v~FIPiSg----~~G~Nl~~~s-~~~pWY~GpTLle 216 (428)
T COG5256 152 VNKMDLVSWDEERFEEIV----SEVSKLLKMV-GYNP-----KDVPFIPISG----FKGDNLTKKS-ENMPWYKGPTLLE 216 (428)
T ss_pred EEcccccccCHHHHHHHH----HHHHHHHHHc-CCCc-----cCCeEEeccc----ccCCcccccC-cCCcCccCChHHH
Confidence 999998742222333333 3444444333 2322 2377888776 3443332222 34567 567777
Q ss_pred HHHHHHhcC
Q 021685 239 TITEVVLNG 247 (309)
Q Consensus 239 ~i~~~~~~~ 247 (309)
.+...-..+
T Consensus 217 aLd~~~~p~ 225 (428)
T COG5256 217 ALDQLEPPE 225 (428)
T ss_pred HHhccCCCC
Confidence 776444443
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=110.94 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------ccCC------CCCCCeeE----EEEeeeCCeEEEEEeCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VSTF------QSEGPRPV----MVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------~~~~------~~~t~~~~----~~~~~~~g~~l~liDTPG~~ 98 (309)
.-.+|+++|..|+|||||+++|+...... ..+. .+.|.... .......+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 44799999999999999999997431100 0011 12222221 12244567789999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .+....+ ..+|++|+|++... .+...+..+++.+.+. + .|.++++||+|..
T Consensus 98 ~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE-N----VKPVLFINKVDRL 151 (720)
T ss_pred ccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc-C----CCEEEEEEChhcc
Confidence 532 2333333 58899999977643 3445555555544332 1 5788999999975
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-10 Score=103.11 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------------CCeEEEEEeCCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGL 97 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~l~liDTPG~ 97 (309)
|+++|.+|+|||||+|+|++... .+++++.+|..+......+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999999874 7788888887766543322 2357999999999
Q ss_pred CCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 98 IEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 98 ~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
....... .++++.+ +.+|++++|+++.
T Consensus 80 v~ga~~~~glg~~fL~~i------r~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDL------RDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 6533211 2333333 5899999998875
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=111.35 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC---------------CCeeEEEEeeeC----------CeEEEEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE---------------GPRPVMVSRSRA----------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~---------------t~~~~~~~~~~~----------g~~l~li 92 (309)
.--+|+++|..++|||||+++|+...........+. |.........+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345999999999999999999997543221111111 111111222232 5679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
||||..+. ..+....+ ..+|++++|++... .+...+..+++.+.+. + .|+|+++||+|..
T Consensus 98 DtPG~~~f---~~~~~~al------~~~D~ailVvda~~-g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF---SSEVTAAL------RVTDGALVVVDCVE-GVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH---HHHHHHHH------hcCCeEEEEEECCC-CcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 99999542 12222222 58999999977643 4666777777666553 2 6899999999984
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-10 Score=104.60 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDT 94 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~l~liDT 94 (309)
.++|+++|.+|+|||||+|+|++... .+++++.+|.++...... .+ ..++.++||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 37899999999999999999999864 667888888777664322 11 246899999
Q ss_pred CCCCCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 95 PGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 95 PG~~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
||+.+..... .++++.+ +.+|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~i------r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL------RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 9996543222 2333333 5899999998874
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=93.59 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-.|+++|++|+|||+|...|..... +....+. .+ ...... .+..+.+||+||... ...+.++.+. .
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~--e~-n~~~~~~~~~~~~~~lvD~PGH~r---lr~~~~~~~~---~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSM--EN-NIAYNVNNSKGKKLRLVDIPGHPR---LRSKLLDELK---Y 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-----B---S--SE-EEECCGSSTCGTCECEEEETT-HC---CCHHHHHHHH---H
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccc--cC-CceEEeecCCCCEEEEEECCCcHH---HHHHHHHhhh---c
Confidence 4789999999999999999997742 1111111 12 122222 566899999999943 3444444321 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC----ccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g----~~~~~~~iiV~tk~D~~~ 168 (309)
...+.+|+||++ +..+...-.+..+.|...+- .....|++|+.||.|+..
T Consensus 73 ~~~~k~IIfvvD--Ss~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 73 LSNAKGIIFVVD--SSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HGGEEEEEEEEE--TTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred hhhCCEEEEEEe--CccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 257899999955 32222222333444333221 122368999999999864
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-10 Score=90.91 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=84.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.++++|+|.+-+|||||+..++....+..++ |..+.+....-++. .| .++.+|||+|...+.... +.+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtagqerfrsit-------ksyy 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT-------KSYY 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH-------HHHh
Confidence 5899999999999999999999887655442 22222221111111 23 378999999994332222 2222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
++.-.+++|++++.....+.-..|+++.....+.....-+.+|.+|+|+.....++.+|.
T Consensus 80 --rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa 139 (213)
T KOG0091|consen 80 --RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA 139 (213)
T ss_pred --hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH
Confidence 466778889888764433455677777776666333233567889999987777777764
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-10 Score=90.97 Aligned_cols=56 Identities=34% Similarity=0.494 Sum_probs=45.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+++++|.+|+|||||+|+|++.....++..++.|++...... ++ .+.||||||+.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 3899999999999999999999987777777777776554433 33 68999999984
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-10 Score=93.09 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=47.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
..++++++|.+|+|||||+|+|++.....++..+++|.....+... ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 4589999999999999999999998776777778888776665543 468999999983
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-09 Score=85.76 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC----CCCCCCeeEE-----EEeeeCC-eEEEEEeCCCCCCCCCCcHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVM-----VSRSRAG-FTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----~~~~t~~~~~-----~~~~~~g-~~l~liDTPG~~~~~~~~~~~ 107 (309)
.+.+|+|+|..|+||||++.++.......+.. ....+.++.+ ....+.+ ..+.++||||...+.+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~--- 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW--- 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH---
Confidence 46899999999999999999999876433311 1111122222 2233344 689999999995443222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHH
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~ 186 (309)
+.+. +++...++++ |.++ .+..+..++..+..... .|+++..||.|+.+. .+. +.++
T Consensus 86 -----~~l~-~ga~gaivlV--Dss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a--~pp--------e~i~ 143 (187)
T COG2229 86 -----EILS-RGAVGAIVLV--DSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA--LPP--------EKIR 143 (187)
T ss_pred -----HHHh-CCcceEEEEE--ecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC--CCH--------HHHH
Confidence 1111 5677777773 4333 33455667766665432 699999999998533 223 4455
Q ss_pred HhhcccccccccccccCCCcEEEecc
Q 021685 187 KFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
+++..+. ..+|++..++
T Consensus 144 e~l~~~~---------~~~~vi~~~a 160 (187)
T COG2229 144 EALKLEL---------LSVPVIEIDA 160 (187)
T ss_pred HHHHhcc---------CCCceeeeec
Confidence 5555442 1268876655
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-09 Score=108.22 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=73.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC---------------CCCeeEEEEeee----------------CC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---------------EGPRPVMVSRSR----------------AG 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~---------------~t~~~~~~~~~~----------------~g 86 (309)
+--+|+|+|+.++|||||+++|+...........+ .|.........+ .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45699999999999999999999654322111111 111111122222 25
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++++||||..|+. .+....+ ..+|++++|++... .+......+++.+.+. + .|+|+++||+|.
T Consensus 98 ~~inliDtPGh~dF~---~e~~~al------~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-~----~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHHH---HHHHHHH------hhcCEEEEEEECCC-CCcccHHHHHHHHHHC-C----CCEEEEEECCcc
Confidence 678999999994321 1222222 57899999977643 4556666666665443 2 689999999998
Q ss_pred C
Q 021685 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 5
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=87.10 Aligned_cols=122 Identities=18% Similarity=0.068 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-CcccccC-CCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCc---HHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE-KAVTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN---YHAIQ 109 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~---~~~~~ 109 (309)
.-.-|.|+|++++|||+|+|.|+|. +.+.+++ ..++|+......... .+..+.++||||+.+..... +..+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4467899999999999999999998 2444443 456666555444444 35789999999998765533 11121
Q ss_pred HHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHH-----------hCccccCcEEEEEecccC
Q 021685 110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN-----------FGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~-----------~g~~~~~~~iiV~tk~D~ 166 (309)
.+.. --.+++||. .+. .....+...+..+.+. ........+++|+--+++
T Consensus 86 ~l~~----llss~~i~n--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 86 ALAT----LLSSVLIYN--SWE-TILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHH----HHhCEEEEe--ccC-cccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 2211 135778877 333 2334444444444331 122333456777766654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=85.68 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 26 LELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 26 ~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
.+++..++..- ..++.+.++|-.++||||++|.++.... ... -..|.-.-...++.+...+.+||.||...+....
T Consensus 6 ~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~-~ed--miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 6 RKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQY-LED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred HHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccc-hhh--hcccccceeEEeccCceEEEEEecCCCccHHHHH
Confidence 34444444422 2579999999999999999999987543 111 1223334445566788899999999996544333
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+. +++++++||++. |...++..-.++...+.+-. -...|++++.||.|+.
T Consensus 83 eryc---------R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~--l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 83 ERYC---------RGVSAIVYVVDAADPDKLEASRSELHDLLDKPS--LTGIPLLVLGNKIDLP 135 (186)
T ss_pred HHHh---------hcCcEEEEEeecCCcccchhhHHHHHHHhcchh--hcCCcEEEecccccCc
Confidence 3221 689999999665 32223333333333333221 1226999999999973
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=101.82 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.++++.+.. -.++++|.+|||||||||+|++.....++..++ +|++...+...-++ .|+||||
T Consensus 162 GI~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG 233 (352)
T PRK12289 162 GLEALLEQLRN-----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPG 233 (352)
T ss_pred CHHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCC
Confidence 44555555543 248999999999999999999987767776665 56655444432222 7999999
Q ss_pred CCCCCC
Q 021685 97 LIEGGY 102 (309)
Q Consensus 97 ~~~~~~ 102 (309)
+...+.
T Consensus 234 ~~~~~l 239 (352)
T PRK12289 234 FNQPDL 239 (352)
T ss_pred cccccc
Confidence 976554
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-10 Score=93.40 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-Ce--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++++|||..++|||+++....... +.....|.. .+.......++ |. .+.+|||+|..+.+. ++ .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTV-Fdnys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR-p 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTV-FDNYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR-P 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc-CcccccCeE-EccceEEEEecCCCEEEEeeeecCCCccccc--------cc-c
Confidence 35899999999999999987777553 233222222 23444455564 65 578999999976533 22 2
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++.+.+|+||+|++++.. ++.+....|+.++...+.. .|+|+|+||.|+.
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 345799999999988653 3555567788888888744 6999999999996
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=94.10 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=85.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
.+.-|.++|.-..|||||+..|-+.++. .+...+.|.+..-+....+ ...++|+||||. +.+..++.-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR 74 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR 74 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc
Confidence 3567899999999999999999998863 3445567787777777763 468999999998 344444321
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
- ..=+|++++|+++|. .+.++..+.++.++.. + .|+++++||+|..
T Consensus 75 G-a~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a-~----vP~iVAiNKiDk~ 120 (509)
T COG0532 75 G-ASVTDIAILVVAADD-GVMPQTIEAINHAKAA-G----VPIVVAINKIDKP 120 (509)
T ss_pred C-CccccEEEEEEEccC-CcchhHHHHHHHHHHC-C----CCEEEEEecccCC
Confidence 0 124699999988875 5777777777666554 3 7999999999985
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=99.00 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...+.. -.++++|.+|||||||||+|++.....++..+. +|+....+.+..+ ..|+|||
T Consensus 194 ~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTP 265 (347)
T PRK12288 194 EGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSP 265 (347)
T ss_pred cCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECC
Confidence 344555555543 137899999999999999999987766666543 3333333333222 3599999
Q ss_pred CCCCCCCC
Q 021685 96 GLIEGGYV 103 (309)
Q Consensus 96 G~~~~~~~ 103 (309)
|+.+.+..
T Consensus 266 Gir~~~l~ 273 (347)
T PRK12288 266 GVREFGLW 273 (347)
T ss_pred CCCcccCC
Confidence 99887653
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=102.16 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC---------------CCCCeeEEEEeee----CCeEEEEEeCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSR----AGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~----~g~~l~liDTPG~~ 98 (309)
.--+|+++|..++|||||+.+|+........... +.|.......+.+ .+..++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3458999999999999999999864322111111 1122222122222 36679999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+. ..+....+ ..+|++++|++... .+...+..+++...+. + .|.|+++||+|..
T Consensus 99 df---~~~~~~~l------~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---GGDVTRAM------RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred Ch---HHHHHHHH------HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 63 22333333 57899999977643 3556666666654333 2 4779999999975
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-08 Score=91.84 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE--EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV--SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~--~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+--|-|+|....|||||+.+|-+..++. +...+.|.+.--+ +.. .|..++|.||||. .++..++.-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGH--------aAF~aMRaR- 220 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLP-SGKSITFLDTPGH--------AAFSAMRAR- 220 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecC-CCCEEEEecCCcH--------HHHHHHHhc-
Confidence 46679999999999999999999988643 3344556654433 344 7889999999998 344444321
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
-..-.|.+++|+..|. ++-++..+.++..+.. ..|+|+.+||+|.. +.+.+. ..++++......
T Consensus 221 GA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp---~a~pek-------v~~eL~~~gi~~ 284 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADD-GVMPQTLEAIKHAKSA-----NVPIVVAINKIDKP---GANPEK-------VKRELLSQGIVV 284 (683)
T ss_pred cCccccEEEEEEEccC-CccHhHHHHHHHHHhc-----CCCEEEEEeccCCC---CCCHHH-------HHHHHHHcCccH
Confidence 1135799999988875 5656666666555443 27999999999953 334443 333444433111
Q ss_pred cccccccCCCcEEEeccc
Q 021685 196 KKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~ 213 (309)
+++ --.++++++++.
T Consensus 285 --E~~-GGdVQvipiSAl 299 (683)
T KOG1145|consen 285 --EDL-GGDVQVIPISAL 299 (683)
T ss_pred --HHc-CCceeEEEeecc
Confidence 110 123788888773
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-10 Score=91.19 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...++. =.++++|.+|||||||||+|++.....++.. .++|+....+.... ...|||||
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTP 95 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTP 95 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSH
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECC
Confidence 444444444444 4789999999999999999999854444332 23344433333322 35799999
Q ss_pred CCCCCCCC
Q 021685 96 GLIEGGYV 103 (309)
Q Consensus 96 G~~~~~~~ 103 (309)
|+.+.+..
T Consensus 96 Gf~~~~l~ 103 (161)
T PF03193_consen 96 GFRSFGLW 103 (161)
T ss_dssp HHHT--GC
T ss_pred CCCccccc
Confidence 99876544
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=98.49 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE--------------------------------------
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-------------------------------------- 78 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-------------------------------------- 78 (309)
...++|++.|++++||||++|+++-+++.+.+.. ++|....
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~g-h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIG-HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccccc-ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4679999999999999999999997765332221 1111000
Q ss_pred -----EEEeee-CC------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHH
Q 021685 79 -----MVSRSR-AG------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146 (309)
Q Consensus 79 -----~~~~~~-~g------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~ 146 (309)
...+-+ ++ -.+.++|.||+.-+...+.. +-.+. ..+|+++||..... .++..+++++....
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tsw----id~~c--ldaDVfVlV~NaEn-tlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSW----IDSFC--LDADVFVLVVNAEN-TLTLSEKQFFHKVS 258 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHH----HHHHh--hcCCeEEEEecCcc-HhHHHHHHHHHHhh
Confidence 000001 01 14789999999543333322 22222 48999999966543 58888898888777
Q ss_pred HHhCccccCcEEEEEecccCC
Q 021685 147 DNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 147 ~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+. + +++.|+.||||..
T Consensus 259 ~~--K---pniFIlnnkwDas 274 (749)
T KOG0448|consen 259 EE--K---PNIFILNNKWDAS 274 (749)
T ss_pred cc--C---CcEEEEechhhhh
Confidence 65 1 5777888999985
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=86.01 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
....+++++|.+|+||||++|++.+.....+++.+++|.....+. .+..+.+|||||+
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 356899999999999999999999887666676666665433222 2336999999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=95.13 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--------------cccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV--------------TVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--------------~~~~~~~~t~~~~~~~~~~~g---~~l~liDTPG~~~~~~ 102 (309)
-++.||.....|||||..+|+....+ .+....+.|...++..+.+.+ .-+++|||||.-|++.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 37899999999999999999853221 112234567777777777766 7899999999988765
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhh
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~ 182 (309)
.-.. .+ .-++.+|+|++... ++..+....+. ..|..+ ..+|+|+||+|+...+ .+.. .
T Consensus 141 EVsR---sl------aac~G~lLvVDA~q-GvqAQT~anf~---lAfe~~--L~iIpVlNKIDlp~ad---pe~V----~ 198 (650)
T KOG0462|consen 141 EVSR---SL------AACDGALLVVDASQ-GVQAQTVANFY---LAFEAG--LAIIPVLNKIDLPSAD---PERV----E 198 (650)
T ss_pred eehe---hh------hhcCceEEEEEcCc-CchHHHHHHHH---HHHHcC--CeEEEeeeccCCCCCC---HHHH----H
Confidence 4332 22 36788899955432 34444433222 222222 5799999999985332 3332 2
Q ss_pred HHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 183 ~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
..+.+++..+ .-+++.+++. ++.+ +.++++.|++.++.-
T Consensus 199 ~q~~~lF~~~-----------~~~~i~vSAK----~G~~-----------v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 199 NQLFELFDIP-----------PAEVIYVSAK----TGLN-----------VEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHhcCC-----------ccceEEEEec----cCcc-----------HHHHHHHHHhhCCCC
Confidence 4555666543 2378888775 3433 567888888877653
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=78.85 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-|+-+++|..|+|||.|+..++.... ..+.|.+ +....+..+++.|. ++.||||+|...+ ....+.+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerf-------ravtrsyy 81 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RAVTRSYY 81 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHH-------HHHHHHHh
Confidence 37889999999999999999886652 3333332 33333334455554 6799999998332 22233333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+++...|.|++++..+.-..-..|+...+..... ..-++++.||+|+....++++++..
T Consensus 82 --rgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yeeak 140 (215)
T KOG0097|consen 82 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEEAK 140 (215)
T ss_pred --ccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHHHH
Confidence 5788889998887522112222333333333222 1346678899999888888888653
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=89.88 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=81.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++++|+|..++||||+|.+....- +..+.......+.......+ ....+.+|||+|..+.+..... +.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA-------yy- 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA-------YY- 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH-------Hh-
Confidence 4999999999999999999998652 22222222222222222222 3345789999999665433322 22
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+++.++++|++.+..-..+.-.+|.+.+...++. .|+++|-||+|+.+....+.+
T Consensus 91 -rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlveds~~~~~ 145 (246)
T KOG4252|consen 91 -RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVEDSQMDKG 145 (246)
T ss_pred -ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHhhhcchH
Confidence 6888999997764322225567788888877765 799999999999755544433
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=101.04 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=70.6
Q ss_pred EeCCCCCHHHHHHHHhCCCccccc--C---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021685 45 MGKGGVGKSSTVNSIIGEKAVTVS--T---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~~~~~~~--~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
+|+.|+|||||+|+|+........ . ..+.|.........+.+..+.+|||||..+. ..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence 599999999999999754322111 0 1222333344566778999999999998531 1222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+ ..+|++++|++... .....+...+..+... + .|+++|+||+|...
T Consensus 78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAG 126 (668)
T ss_pred HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 2222 47899999977653 3445555555554432 2 68999999999853
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-09 Score=97.37 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..+.++++.+.+.. ...+++++|.+|||||||+|+|++.. ...++..+++|.....+.. +..+.++||||+
T Consensus 139 ~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~ 214 (360)
T TIGR03597 139 NGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGI 214 (360)
T ss_pred CCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCC
Confidence 34555555554321 23699999999999999999999853 3467788888887665443 224689999999
Q ss_pred CCCCCCcHHH-HHHHHHhhhcCCCcEEEEEEe
Q 021685 98 IEGGYVNYHA-IQLIKRFLLNKTIDVLLYVDR 128 (309)
Q Consensus 98 ~~~~~~~~~~-~~~i~~~~~~~~~d~il~v~~ 128 (309)
.......... .+.++........+.+.|..+
T Consensus 215 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~ 246 (360)
T TIGR03597 215 INSHQMAHYLDKKDLKYITPKKEIKPKTYQLN 246 (360)
T ss_pred CChhHhhhhcCHHHHhhcCCCCccCceEEEeC
Confidence 7643211100 011122223346677777744
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-09 Score=93.20 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...+.. -.++++|.+|||||||||+|++.....++..+ ++|+....+.. .+ -.|+|||
T Consensus 109 ~gi~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtP 179 (245)
T TIGR00157 109 DGLKELIEALQN-----RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTP 179 (245)
T ss_pred hhHHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCC
Confidence 345555554443 37899999999999999999998655544432 35665555444 22 3799999
Q ss_pred CCCCCCC
Q 021685 96 GLIEGGY 102 (309)
Q Consensus 96 G~~~~~~ 102 (309)
|+.+.+.
T Consensus 180 G~~~~~l 186 (245)
T TIGR00157 180 GFNEFGL 186 (245)
T ss_pred CccccCC
Confidence 9987553
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=88.24 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=72.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCC-----------CCC--eeEEEEee----------------
Q 021685 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-----------EGP--RPVMVSRS---------------- 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~-----------~t~--~~~~~~~~---------------- 83 (309)
+-.|+++|.+|+||||++..|. |.++..++..+. ... -+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999887 554443332110 000 11111010
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||.. ..++.....+........+|.+++|. |+. .........+.+.+.. .+.-+|+||
T Consensus 180 ~~~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLVl--da~-~Gq~a~~~a~~F~~~~-----~~~g~IlTK 248 (429)
T TIGR01425 180 KENFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFVM--DGS-IGQAAEAQAKAFKDSV-----DVGSVIITK 248 (429)
T ss_pred hCCCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEEe--ccc-cChhHHHHHHHHHhcc-----CCcEEEEEC
Confidence 025689999999973 34445555665555445788999994 432 2233344555555433 467899999
Q ss_pred ccCCC
Q 021685 164 AQLSL 168 (309)
Q Consensus 164 ~D~~~ 168 (309)
.|...
T Consensus 249 lD~~a 253 (429)
T TIGR01425 249 LDGHA 253 (429)
T ss_pred ccCCC
Confidence 99753
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=78.67 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=63.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|..|+||+||.|+|-|..... +..+-..+...+ .|||||-. ..+...+..+.... ..+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--------kKTQAve~~d~~----~IDTPGEy---~~~~~~Y~aL~tt~--~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--------KKTQAVEFNDKG----DIDTPGEY---FEHPRWYHALITTL--QDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--------cccceeeccCcc----ccCCchhh---hhhhHHHHHHHHHh--hcc
Confidence 78999999999999999999987422 111222222222 49999973 23334433333222 689
Q ss_pred cEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 121 DVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|..++.. ++.+. +... ..+++|-|+||+|+.+
T Consensus 66 dvi~~v~~and~~s~f~p~-------f~~~----~~k~vIgvVTK~DLae 104 (148)
T COG4917 66 DVIIYVHAANDPESRFPPG-------FLDI----GVKKVIGVVTKADLAE 104 (148)
T ss_pred ceeeeeecccCccccCCcc-------cccc----cccceEEEEecccccc
Confidence 999999776532 22221 1122 2267999999999964
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=78.60 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=82.2
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCC
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~ 103 (309)
+..++..++.....++||+++|-.++|||||+..|.+++.....+. .-......++.| .++++||.-|...-...
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT----~GFn~k~v~~~g~f~LnvwDiGGqr~IRpy 78 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT----NGFNTKKVEYDGTFHLNVWDIGGQRGIRPY 78 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcccc----CCcceEEEeecCcEEEEEEecCCccccchh
Confidence 4567788888888899999999999999999999999985433332 222333455555 79999999998432222
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++ .++|.++||++-... ++.+...+..+.+.+. +-...|+.+-.||.|+.
T Consensus 79 WsNYy---------envd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 79 WSNYY---------ENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLL 132 (185)
T ss_pred hhhhh---------hccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHH
Confidence 22222 588999999664322 2322222333333221 12225777777888875
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-09 Score=82.28 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred EEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+++|.+++|||.|+-+.-.... ..+.+-++ +.+.....+..++ .++.+|||+|...+...... +. +.
T Consensus 1 mllgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a-------yy--rd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA-------YY--RD 70 (192)
T ss_pred CccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh-------hh--cc
Confidence 4689999999998644333221 11222111 1222122223333 47899999999554333322 22 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
+|++|+++++......+.-..|+..+.+..... ..++++.||+|+.++..+
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERAV 121 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhcc
Confidence 999999998865333356678999988764333 578999999999755443
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-08 Score=85.70 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=45.2
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+|||||..+...... ....+.+.+.....++++++++... ..+..+......+....-.....|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~-~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE-SGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhH-HHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 589999999865432221 1122223332223899999955432 23455544444332111111237999999999987
Q ss_pred CCC
Q 021685 168 LPD 170 (309)
Q Consensus 168 ~~~ 170 (309)
...
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 543
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-08 Score=76.56 Aligned_cols=128 Identities=15% Similarity=0.196 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+.++++|+|.-++|||+++..|+=.+.........+-.+.+....+- .| ..+.|.||+|+.+....- =+.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL------prhy 81 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL------PRHY 81 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh------hHhH
Confidence 45999999999999999998887544323333333333333333332 22 268999999996652111 1222
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ .-+|++++|++.+... |. -.+.++.-.+.+...-..|++++.|+.|..++.+.+.+
T Consensus 82 ~--q~aDafVLVYs~~d~eSf~--rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d 139 (198)
T KOG3883|consen 82 F--QFADAFVLVYSPMDPESFQ--RVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD 139 (198)
T ss_pred h--ccCceEEEEecCCCHHHHH--HHHHHHHHHhhccccccccEEEEechhhcccchhcCHH
Confidence 2 5789999998875321 21 12223222222222223689999999999877655433
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-08 Score=96.14 Aligned_cols=72 Identities=29% Similarity=0.427 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
.+.++++.+.+.. ..-++.++|.+|||||||||+|++. +...+++.+++|......... + ...++||||+.
T Consensus 146 gI~eL~~~I~~~~-~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~ 221 (365)
T PRK13796 146 GIDELLEAIEKYR-EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGII 221 (365)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--C-CcEEEECCCcc
Confidence 3445555554321 2358999999999999999999964 234578889999887655442 2 25799999996
Q ss_pred C
Q 021685 99 E 99 (309)
Q Consensus 99 ~ 99 (309)
.
T Consensus 222 ~ 222 (365)
T PRK13796 222 H 222 (365)
T ss_pred c
Confidence 4
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=85.66 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~~ 114 (309)
...++++.|.+|+|||||+|.++......-... +.+...+......-|..+.++|.||++..++..+ ..-.....+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k-~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK-SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcC-CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 458999999999999999999997653221111 1222222222233466899999999765433221 222333444
Q ss_pred hhc--CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLN--KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~--~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .-.-+++++ |+. .+.+.|...+.++.+.. .|+.+|+||+|..
T Consensus 214 ~leR~nLv~~FLLv---d~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 214 LLERENLVRVFLLV---DASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred HHhhhhhheeeeee---eccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 432 234445555 332 46677877777776653 7999999999974
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=90.93 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------C------CeEEEEEeCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------A------GFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~------g~~l~liDTPG~~~~ 100 (309)
.+++.|||.||||||||.|+++... +...++|.||.+|-.....+ . -..+.++|.+|+-.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3789999999999999999999988 57889999998876543322 1 125799999999754
Q ss_pred ----CCCcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 101 ----GYVNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 101 ----~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
.....+.++.| +.+|+++.|++..
T Consensus 81 As~GeGLGNkFL~~I------RevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNI------REVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhh------hhcCeEEEEEEec
Confidence 34556777777 4899999997763
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-08 Score=81.32 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.++++|+++|--|+||||+++.|--.+...+.+ |.-......++.+..+.+||.-|..........++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~------- 82 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF------- 82 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCCCcccccchhhhc-------
Confidence 3467999999999999999999988776544422 23233335567799999999999944333332222
Q ss_pred hcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 116 LNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+..++++||++- |..|+.+.-.++.+.+... .....|+++..||.|+ +...+..+.
T Consensus 83 --~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~--~l~~~~llv~aNKqD~--~~als~~ei 139 (181)
T KOG0070|consen 83 --QNTQGLIFVVDSSDRERIEEAKEELHRMLAEP--ELRNAPLLVFANKQDL--PGALSAAEI 139 (181)
T ss_pred --cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc--ccCCceEEEEechhhc--cccCCHHHH
Confidence 588999999553 3223433322222222221 1123688899999997 344444443
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-08 Score=89.02 Aligned_cols=59 Identities=25% Similarity=0.456 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
..+++|.+|||||||+|+|.++....++.. .+||+....+.+.-+| .|+||||+.+.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 568889999999999999998754444432 2344444444433333 4899999987665
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-08 Score=94.72 Aligned_cols=63 Identities=30% Similarity=0.442 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
.++|.+||-+||||||+||+|.|.....|+..|+-|++.+++.+.. .+.+.|+||+--..+..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence 5999999999999999999999999999999999999998876543 58899999997665544
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-08 Score=88.66 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.++...+. .-.++++|.+|+|||||+|+|+|.....++..+. +|+....+.... ...|+||||
T Consensus 154 gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG 225 (298)
T PRK00098 154 GLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPG 225 (298)
T ss_pred cHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCC
Confidence 4444444443 2468999999999999999999986555554432 444433333322 247999999
Q ss_pred CCCCCC
Q 021685 97 LIEGGY 102 (309)
Q Consensus 97 ~~~~~~ 102 (309)
+.+.+.
T Consensus 226 ~~~~~~ 231 (298)
T PRK00098 226 FSSFGL 231 (298)
T ss_pred cCccCC
Confidence 976443
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-08 Score=80.06 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-CCC--CeeEEEEeee-----CC----eEEEEEeCCCCCCCCCCcHHH
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEG--PRPVMVSRSR-----AG----FTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-~~t--~~~~~~~~~~-----~g----~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.+.+|.+|+||||++-..+.... .+.+- ..+ -+.....+.- .| ..+.+|||+|...+.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F--~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR------ 81 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKF--NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR------ 81 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcc--cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH------
Confidence 5678899999999999977776542 11111 111 1111111111 11 258999999984322
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+....|. +.+-.+|++++++.....-+-..|+..++-+.=-+ ..-+|++.||+|+...
T Consensus 82 -SLTTAFf--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE-~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 82 -SLTTAFF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE-NPDIVLCGNKADLEDQ 139 (219)
T ss_pred -HHHHHHH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccC-CCCEEEEcCccchhhh
Confidence 2222233 46677888888765433344567777776542211 1468999999998543
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=87.69 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCC-
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGG- 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~~- 101 (309)
+++.|+|.+|+|||||.|+|++.....+.+++.+|..+......+.+ -.+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999999854677888888887766555443 258999999997643
Q ss_pred ---CCcHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021685 102 ---YVNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 102 ---~~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
....+.+..+ +.+|++++|++.
T Consensus 83 ~g~Glgn~fL~~i------r~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANI------REVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHH------HhCCEEEEEEeC
Confidence 2344566666 589999999876
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.8e-08 Score=86.94 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=40.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|.+|+|||||+|+|+|.....++... ++|.....+..... ..++||||+.+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 57999999999999999999998654444322 23444433333222 3699999997644
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=85.02 Aligned_cols=119 Identities=18% Similarity=0.327 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee-----------------eCC--------------
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS-----------------RAG-------------- 86 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-----------------~~g-------------- 86 (309)
-=|+++|.-+.||||+||.|+..+.. .+++.|++..-....... +.|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 45899999999999999999987632 233333332211111110 000
Q ss_pred --------eEEEEEeCCCCCCCCCCc-H---HHHHHHHHhhhcCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCcc
Q 021685 87 --------FTLNIVDTPGLIEGGYVN-Y---HAIQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQ 152 (309)
Q Consensus 87 --------~~l~liDTPG~~~~~~~~-~---~~~~~i~~~~~~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~ 152 (309)
..++||||||+.+..... . ..-..+.=|. .++|.|++++ |++. ++++-.+++..++ |.+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa--eR~D~IiLlf--D~hKLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA--ERVDRIILLF--DAHKLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH--HhccEEEEEe--chhhccccHHHHHHHHHhh---CCc
Confidence 127999999998654321 0 0111111111 6899999994 4444 4455455555554 433
Q ss_pred ccCcEEEEEecccCC
Q 021685 153 IWKRALIVLTHAQLS 167 (309)
Q Consensus 153 ~~~~~iiV~tk~D~~ 167 (309)
..+-+|+||+|.+
T Consensus 212 --dkiRVVLNKADqV 224 (532)
T KOG1954|consen 212 --DKIRVVLNKADQV 224 (532)
T ss_pred --ceeEEEecccccc
Confidence 5788999999986
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-06 Score=77.92 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++++.+.........|+|+|.+|+|||||++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 456667766666778999999999999999999775
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-07 Score=81.51 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=103.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------------------CCCCCC-eeEEE--EeeeC------CeEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------------------FQSEGP-RPVMV--SRSRA------GFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------------------~~~~t~-~~~~~--~~~~~------g~~l 89 (309)
.+++|.++|....|||||..+|.|--....+. .+.|.. .++.. ..+.. -+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 56999999999999999999999852111110 111110 00000 00001 1368
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.|+|.||. +.+. ...++. .=-|..|+|+..+.....++..+-+-.|. ..|- +++|+|=||.|+..
T Consensus 89 SfVDaPGH--------e~LM--ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKIDlV~ 154 (415)
T COG5257 89 SFVDAPGH--------ETLM--ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKIDLVS 154 (415)
T ss_pred EEeeCCch--------HHHH--HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEecccceec
Confidence 99999998 2221 112211 12388899977766555566665554443 3343 79999999999973
Q ss_pred CCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 169 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.+. ..+. -+.++++++... +.+.|++++++.- +. .++.|++.|.+..+...
T Consensus 155 ~E~-AlE~-----y~qIk~FvkGt~--------Ae~aPIIPiSA~~----~~-----------NIDal~e~i~~~IptP~ 205 (415)
T COG5257 155 RER-ALEN-----YEQIKEFVKGTV--------AENAPIIPISAQH----KA-----------NIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHH-HHHH-----HHHHHHHhcccc--------cCCCceeeehhhh----cc-----------CHHHHHHHHHHhCCCCc
Confidence 321 2232 267778887542 2347999998741 11 27899998888887665
Q ss_pred Ccc
Q 021685 249 KAL 251 (309)
Q Consensus 249 ~~~ 251 (309)
+.+
T Consensus 206 rd~ 208 (415)
T COG5257 206 RDL 208 (415)
T ss_pred cCC
Confidence 544
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-07 Score=93.00 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=66.3
Q ss_pred CCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 021685 50 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI 111 (309)
Q Consensus 50 ~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~l~liDTPG~~~~~~~~~~~~~~i 111 (309)
++||||+.+|.+.++. .+...+.|.+.-.+....+. ..+.||||||..+. ..+
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 4699999999999863 33344555554333333221 13899999997332 111
Q ss_pred HHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 112 ~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+. .....+|++++|++++. .+...+...+..+... + .|+++|+||+|+.+
T Consensus 543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 11 11257899999987753 4666677777666543 2 69999999999864
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-06 Score=71.54 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=51.2
Q ss_pred EeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcE
Q 021685 81 SRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 81 ~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
.+.+++ ..+.||||||......... .++ .++|++|+|++++.. ++... ..++..+....+.. .|+
T Consensus 21 ~~~~~~~~v~l~iwDt~G~e~~~~~~~-------~~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~--~pi 88 (176)
T PTZ00099 21 TLYLDEGPVRLQLWDTAGQERFRSLIP-------SYI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKD--VII 88 (176)
T ss_pred EEEECCEEEEEEEEECCChHHhhhccH-------HHh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCC--CeE
Confidence 344444 4789999999854332221 222 689999999888643 24333 35666665554432 688
Q ss_pred EEEEecccCCCCCCCCH
Q 021685 158 LIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 158 iiV~tk~D~~~~~~~~~ 174 (309)
++|+||+|+......+.
T Consensus 89 ilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 89 ALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEECcccccccCCCH
Confidence 99999999864333333
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=84.67 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=66.2
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--------------C---eEEEEEeCCCC
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--------------G---FTLNIVDTPGL 97 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--------------g---~~l~liDTPG~ 97 (309)
+..+.+++.+||.+|+|||||.|+|+.... ...++|.+|.+|........ + -.++++|++|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 445679999999999999999999999876 47889999887765444321 1 15899999999
Q ss_pred CCCCC----CcHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021685 98 IEGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 98 ~~~~~----~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
-.+.. .....++.+ +.+|+++.|++.
T Consensus 95 vkGAs~G~GLGN~FLs~i------R~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHI------RHVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhh------hhccceeEEEEe
Confidence 76433 344566666 478888888664
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-07 Score=84.82 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCC---C----------CCeeEEEEee-------------eC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS---E----------GPRPVMVSRS-------------RA 85 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~---~----------t~~~~~~~~~-------------~~ 85 (309)
.+-.|+++|++|+||||++..|... .+..+...+. . ..-+...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988742 1111111000 0 0001010000 01
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
+..+.||||||.. ..+...++.+.+.+....+|.+++| +++. ....+ .++++.+.. + ..-=+++||.
T Consensus 320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLV--LsAT-tk~~d~~~i~~~F~~-~-----~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLT--LSAS-MKSKDMIEIITNFKD-I-----HIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEE--ECCc-cChHHHHHHHHHhcC-C-----CCCEEEEEcc
Confidence 4579999999983 3445556666666655677888888 4432 22233 344444332 1 3567889999
Q ss_pred cCCC
Q 021685 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|...
T Consensus 388 DET~ 391 (436)
T PRK11889 388 DETA 391 (436)
T ss_pred cCCC
Confidence 9753
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=76.23 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||. ...+.+..+.+++++....++-+++|.+... ...+...+....+.++ ..=+++||.|
T Consensus 83 ~~D~vlIDT~Gr---~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGR---SPRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SS---SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCCEEEEecCCc---chhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhccc-----CceEEEEeec
Confidence 457999999998 4445555566666554447788888855442 3445555555555543 4557799999
Q ss_pred CC
Q 021685 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 85
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=77.78 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCc---------------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKA---------------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~ 99 (309)
+...++||..+|..+.|||||..+|++.=. ++.....+.|..+....++-..+.+..+|+||..|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 445679999999999999999998885310 11111223455555666777888999999999843
Q ss_pred CCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021685 100 GGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+++..+. ....|..|+|++.+.. .-++.++-+ .|.+..|- ..+++.+||+|+.+. ++.+
T Consensus 88 ----------YvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHi-LlarqvGv---p~ivvflnK~Dmvdd-----~ell 147 (394)
T COG0050 88 ----------YVKNMITGAAQMDGAILVVAATDG-PMPQTREHI-LLARQVGV---PYIVVFLNKVDMVDD-----EELL 147 (394)
T ss_pred ----------HHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhh-hhhhhcCC---cEEEEEEecccccCc-----HHHH
Confidence 2333331 1356777888776543 334444433 23444453 467888899999742 2333
Q ss_pred HhhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021685 179 SKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 179 ~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
+...-+.++++... +|.....|++.-++
T Consensus 148 elVemEvreLLs~y------~f~gd~~Pii~gSa 175 (394)
T COG0050 148 ELVEMEVRELLSEY------GFPGDDTPIIRGSA 175 (394)
T ss_pred HHHHHHHHHHHHHc------CCCCCCcceeechh
Confidence 33346667777543 22334478876554
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=75.49 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=87.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC------CCcccc-----cCCCCC------------CCeeEEEE
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTV-----STFQSE------------GPRPVMVS 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~-----~~~~~~------------t~~~~~~~ 81 (309)
..++++++-+...+.+.|.|.|.+|+|||||+++|.. ..++.. +++.+- ..++-.+.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 3467777777666789999999999999999999873 332221 111110 00111111
Q ss_pred ee----------------------eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-cChhH
Q 021685 82 RS----------------------RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD 138 (309)
Q Consensus 82 ~~----------------------~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d 138 (309)
.. ..|+.+.||.|-|.+.. +- .+. .-+|.+++|..+.... +...-
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~----~I~-----~~aD~~v~v~~Pg~GD~iQ~~K 162 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS---EV----DIA-----DMADTVVLVLVPGLGDEIQAIK 162 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH---HH----HHH-----TTSSEEEEEEESSTCCCCCTB-
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HH----HHH-----HhcCeEEEEecCCCccHHHHHh
Confidence 11 14777999999999532 11 122 5789999997765322 21111
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021685 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
.-+| +. .=++|+||+|.. . .+.. ...++..+.-. .........||+.+++. .
T Consensus 163 aGim----Ei-------aDi~vVNKaD~~-g----A~~~----~~~l~~~l~l~----~~~~~~W~ppV~~tsA~----~ 214 (266)
T PF03308_consen 163 AGIM----EI-------ADIFVVNKADRP-G----ADRT----VRDLRSMLHLL----REREDGWRPPVLKTSAL----E 214 (266)
T ss_dssp TTHH----HH--------SEEEEE--SHH-H----HHHH----HHHHHHHHHHC----STSCTSB--EEEEEBTT----T
T ss_pred hhhh----hh-------ccEEEEeCCChH-H----HHHH----HHHHHHHHhhc----cccccCCCCCEEEEEeC----C
Confidence 1122 22 357899999942 1 1111 13333333311 11112234688887763 3
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 219 NENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
+.+ +++||+.|....
T Consensus 215 ~~G-----------i~eL~~~i~~~~ 229 (266)
T PF03308_consen 215 GEG-----------IDELWEAIDEHR 229 (266)
T ss_dssp TBS-----------HHHHHHHHHHHH
T ss_pred CCC-----------HHHHHHHHHHHH
Confidence 333 889999887764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=83.51 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+.-.|.|+|.||+|||||||+|++..... .+.-..|.+++.+.... .|..+.+.||-||.. ...-.....++..+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence 445689999999999999999999765422 22223345555444443 577899999999953 23334444444333
Q ss_pred h-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc---cccCcEEEEEecccCC
Q 021685 116 L-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~---~~~~~~iiV~tk~D~~ 167 (309)
. -..+|++|.|.++.......+....+..+.+. |- .....++=|-||.|..
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence 2 25889999997765422333334455555443 42 1123466678888863
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=82.14 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-hc
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~ 117 (309)
.-||+++|-|.+|||||+..|++..- ....+..+|..++...++++|-+|.++|.||+.++....... -++.+ ..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR---GRQviavA 137 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR---GRQVIAVA 137 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC---CceEEEEe
Confidence 46999999999999999999998753 445567788888888999999999999999998754433210 01111 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g 150 (309)
+.+|++|.| +|+.. ++..+++++.-.+..|
T Consensus 138 rtaDlilMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 138 RTADLILMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred ecccEEEEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 588999999 55432 2334445554444444
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.6e-07 Score=83.98 Aligned_cols=126 Identities=18% Similarity=0.292 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-----------------------------------------------
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS----------------------------------------------- 72 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~----------------------------------------------- 72 (309)
.+|+|+|...+||||.+..+....+++-+...-
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 589999999999999999998765544333221
Q ss_pred ------CCCeeEEEEeeeCCe---EEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChh
Q 021685 73 ------EGPRPVMVSRSRAGF---TLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL 137 (309)
Q Consensus 73 ------~t~~~~~~~~~~~g~---~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~ 137 (309)
+|..+.+....+.|. +.++||.||+..+-. ..+.+....+.++ .++++||+|+. |+ ++ +.
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ-DG-SV-DA 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ-DG-SV-DA 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec-cC-Cc-ch
Confidence 122222334444443 578999999975321 1123333334444 78999999954 33 33 44
Q ss_pred HHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 138 DKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 138 d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
++..+..|...+.+ ..+.+|+|+||.|+.+.+-
T Consensus 464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred hhhhHHHHHHhcCC-CCCeeEEEEeecchhhhcc
Confidence 55555555554432 2378999999999975543
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=81.71 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
+.|+..|.--.|||||+.+++|..... .....++|.+...+....+...+.+||+||..+. ++..+ .
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~----------i~~miag 70 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF----------ISNLLAG 70 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH----------HHHHHhh
Confidence 357889999999999999999975322 2223456666666666667778999999999331 12211 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|.+++|++.|. .++.+..+.+..+ +.+|. ++.++|+||+|..++
T Consensus 71 ~~~~d~alLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d~ 118 (447)
T COG3276 71 LGGIDYALLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVDE 118 (447)
T ss_pred hcCCceEEEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEeccccccH
Confidence 158899999987754 5777777666444 55665 688999999998633
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-07 Score=88.44 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCeeEEEEeeeCC-eEEEEEeCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~---------------~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~ 100 (309)
--+|.|+|+..+|||||.-+|+-..... .+.. .+.|......+..+.+ ..+++|||||.-|+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc
Confidence 4689999999999999998888432111 1111 1223334445667786 99999999999776
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.. +....+ .-+|.+++|++... .+..+.....+...+.. .|.++++||+|..
T Consensus 90 t~---EV~rsl------rvlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 90 TI---EVERSL------RVLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred HH---HHHHHH------HhhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 43 333334 35688888866654 45566555665555442 7999999999975
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-06 Score=74.84 Aligned_cols=171 Identities=15% Similarity=0.244 Sum_probs=92.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeee--------------CCeEEEEEeCCCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSR--------------AGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~--------------~g~~l~liDTPG~~~~~~~ 103 (309)
.+++.++|...+|||||..+|..-.- +.-..-+..+.+..+....+ +...+++||+||..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 49999999999999999999874321 01111122222222211111 12256999999982
Q ss_pred cHHHHHHHHHhhh-cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021685 104 NYHAIQLIKRFLL-NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 104 ~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
..|+..+. ..=+|..++|+++...- ....+.-++..+. -++.|+|+||.|.+++.. ....+++.
T Consensus 82 -----sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-------c~klvvvinkid~lpE~q--r~ski~k~ 147 (522)
T KOG0461|consen 82 -----SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-------CKKLVVVINKIDVLPENQ--RASKIEKS 147 (522)
T ss_pred -----HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-------ccceEEEEeccccccchh--hhhHHHHH
Confidence 22333331 23568889997765422 2222332332222 167999999999875532 12222222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
...+++.++.. .|.. ..|++.+++...++..++ +.+|.+.+..+...
T Consensus 148 ~kk~~KtLe~t-~f~g------~~PI~~vsa~~G~~~~~~-----------i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 148 AKKVRKTLEST-GFDG------NSPIVEVSAADGYFKEEM-----------IQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHHhc-CcCC------CCceeEEecCCCccchhH-----------HHHHHHHHHHhhcC
Confidence 33444444322 2322 379999988655544332 66777666655543
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.9e-06 Score=75.89 Aligned_cols=122 Identities=16% Similarity=0.253 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCC--C------------CCCeeEEEEe---------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQ--S------------EGPRPVMVSR--------------- 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~--~------------~t~~~~~~~~--------------- 82 (309)
.+..|+++|.+|+||||++..|.. ..+..+.... . ..........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998877763 1221111100 0 0000000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.||||||... .+...++.++.....-.+|.+++|.+... .....+..+...+.. ...-+|+|
T Consensus 219 ~~~~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEe
Confidence 11355799999999843 34455555655544457899999954421 122233333333332 35778999
Q ss_pred cccCCCCC
Q 021685 163 HAQLSLPD 170 (309)
Q Consensus 163 k~D~~~~~ 170 (309)
|.|....-
T Consensus 288 KlD~~~~~ 295 (336)
T PRK14974 288 KVDADAKG 295 (336)
T ss_pred eecCCCCc
Confidence 99986433
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.50 E-value=7e-06 Score=73.86 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=44.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh------cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~------~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.+..+.||||||... .+...++.++.+.. ...+|.+++|++.. ....+........+.+ ...-
T Consensus 153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---~~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---TGQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---CCHHHHHHHHHHHhhC-----CCCE
Confidence 456899999999854 34444444444331 23488899996553 2233444444444433 3578
Q ss_pred EEEecccCCCC
Q 021685 159 IVLTHAQLSLP 169 (309)
Q Consensus 159 iV~tk~D~~~~ 169 (309)
+|+||.|....
T Consensus 222 ~IlTKlDe~~~ 232 (272)
T TIGR00064 222 IILTKLDGTAK 232 (272)
T ss_pred EEEEccCCCCC
Confidence 89999998533
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=75.26 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.-|+|+|-.|+|||||+.+|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 5789999999999999999888753
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=82.54 Aligned_cols=145 Identities=16% Similarity=0.209 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHh---CCCc-----------cc----------------ccCCCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSII---GEKA-----------VT----------------VSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~---g~~~-----------~~----------------~~~~~~~t~~~~~~~~~~~g 86 (309)
...++++++|...+|||||.-.|+ |.-- +. .....+.|.+..+..++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 357999999999999999987776 2100 00 00111223333344445556
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc----C--hhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV----D--NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~----~--~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++|+|+||..++ .. ..+..+ ..+|+.++|+++....| . .+.++.+..+ +.+|. ..+||+
T Consensus 255 ~~~tliDaPGhkdF--i~-nmi~g~------sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi---~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDF--IP-NMISGA------SQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGI---SQLIVA 321 (603)
T ss_pred eeEEEecCCCcccc--ch-hhhccc------cccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCc---ceEEEE
Confidence 68999999997543 22 222222 47889889877644322 2 2234444333 45564 589999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhccccccccc
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKK 198 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 198 (309)
+||+|+.. ++-+.|. .....+..++.+.++|...
T Consensus 322 iNKmD~V~---Wsq~RF~-eIk~~l~~fL~~~~gf~es 355 (603)
T KOG0458|consen 322 INKMDLVS---WSQDRFE-EIKNKLSSFLKESCGFKES 355 (603)
T ss_pred eecccccC---ccHHHHH-HHHHHHHHHHHHhcCcccC
Confidence 99999873 3333332 2235677777555566543
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-06 Score=74.58 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCC-CC------------CCeeEEEEe----------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQ-SE------------GPRPVMVSR---------------- 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~-~~------------t~~~~~~~~---------------- 82 (309)
.+-.|+++|.+|+||||++..|.+. ++...+... .. ..-+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999888753 221111110 00 000111000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~ 156 (309)
...+..+.||||||.... +...++.++... ....+|-+++|.+... ...+..-.....+.. ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CC
Confidence 124567999999998443 222223333222 1235778888855442 122222222322222 36
Q ss_pred EEEEEecccCC
Q 021685 157 ALIVLTHAQLS 167 (309)
Q Consensus 157 ~iiV~tk~D~~ 167 (309)
.-+|+||.|..
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 78999999975
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=66.83 Aligned_cols=120 Identities=16% Similarity=0.255 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+.+|-.++||||++-.|.-+.. +...+. .-.-....++.+..+.+||.-|... .. ..-+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ipT--vGFnvetVtykN~kfNvwdvGGqd~---iR----plWrhYy-- 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPT--VGFNVETVTYKNVKFNVWDVGGQDK---IR----PLWRHYY-- 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC--cccccc--cceeEEEEEeeeeEEeeeeccCchh---hh----HHHHhhc--
Confidence 579999999999999999988876542 222222 2223335567888999999999822 11 1112233
Q ss_pred CCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCcc-c-cCcEEEEEecccCCCCCCCCHHH
Q 021685 118 KTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQ-I-WKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 118 ~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~-~-~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
++..++|||++. +..++.+. -.++....+.. + ..++++..||-|+. +..+..+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeA----r~ELh~ii~~~em~~~~~LvlANkQDlp--~A~~pqe 138 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEA----RNELHRIINDREMRDAIILILANKQDLP--DAMKPQE 138 (180)
T ss_pred cCCceEEEEEeccchhhHHHH----HHHHHHHhCCHhhhcceEEEEecCcccc--cccCHHH
Confidence 688999999543 22222222 22333333321 1 13566777999983 4444444
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7e-07 Score=75.65 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=70.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
.+=.|+++|.+++|||+|.-.|..... .... +...+-...+.++...+.+||.||.. ... ..+..++ .
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~---rlR----~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHS---RLR----RKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcH---HHH----HHHHHHccc
Confidence 346899999999999999988876531 1111 11223334445566678999999982 222 2222333 2
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHH----HHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l----~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+-+++|| +|...+...-....+.+ ....+..-..|++++-||.|+...
T Consensus 106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2477889999 44434444433333333 333222223689999999998644
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=71.44 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++=+++++|-.|+|||||++-|-..+.... -+|.+|.+....++|.+++.+|.-|.. ++...-+.|+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf-- 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF-- 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--
Confidence 457899999999999999998887664332 235666666788999999999999872 2222233444
Q ss_pred CCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|+++|.+++ |..++.+. +.-++.+... ..-.+.|+++..||+|...
T Consensus 86 ~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred hhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 688999998665 44444332 2222222211 1123479999999999753
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-06 Score=79.85 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=92.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGG 101 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~~~ 101 (309)
+..++..-..|||||..+|+...... .....+.|...+.+...+. ...+.+|||||.-|+.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56788899999999999998542211 1123345656555555542 2468999999998876
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+.-.. .+ .-+...|+|++... ++.. +.+...-..+..+ .-+|.|+||+|+...+ .+..
T Consensus 91 YEVSR---SL------AACEGalLvVDAsQ-GveA---QTlAN~YlAle~~--LeIiPViNKIDLP~Ad---perv---- 148 (603)
T COG0481 91 YEVSR---SL------AACEGALLVVDASQ-GVEA---QTLANVYLALENN--LEIIPVLNKIDLPAAD---PERV---- 148 (603)
T ss_pred EEehh---hH------hhCCCcEEEEECcc-chHH---HHHHHHHHHHHcC--cEEEEeeecccCCCCC---HHHH----
Confidence 54332 22 24556677744432 2433 3333222222222 4699999999985332 2222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
...+.+.|.-. . ...+.+|++ ++.+ ++++++.|+..++.-.
T Consensus 149 k~eIe~~iGid----~-------~dav~~SAK----tG~g-----------I~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 149 KQEIEDIIGID----A-------SDAVLVSAK----TGIG-----------IEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHhCCC----c-------chheeEecc----cCCC-----------HHHHHHHHHhhCCCCC
Confidence 23444555322 1 234445553 4433 7899999999887653
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=80.65 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc--ccccCCCCCCCeeE-------------------EEEe----------eeCCe
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPV-------------------MVSR----------SRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~--~~~~~~~~~t~~~~-------------------~~~~----------~~~g~ 87 (309)
.=.|++||+|||||||++-.|...-. .......-.|.+.+ .... ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45789999999999999877764321 00000111111111 1111 02345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC-CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~-~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.+|||.|. +..+....+.++.++... .++..|.+ +.+. . .+-|+.+.+.|+.- ..--+++||.|.
T Consensus 283 d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvl-sat~---K---~~dlkei~~~f~~~--~i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVL-SATT---K---YEDLKEIIKQFSLF--PIDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEE-ecCc---c---hHHHHHHHHHhccC--CcceeEEEcccc
Confidence 7899999999 667777778888777433 44444444 3322 1 22344555555431 234578899997
Q ss_pred C
Q 021685 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 351 T 351 (407)
T COG1419 351 T 351 (407)
T ss_pred c
Confidence 5
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=78.73 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+.+++|+|-||+|||||||++... ..+.+++.++.|+.......-.+...+.++||||..-....+.+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence 5699999999999999999998743 44567888888876655333345557999999999887666655
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-07 Score=81.54 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHH----HHHHhCccccCcEEEEEec
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA----ITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~----l~~~~g~~~~~~~iiV~tk 163 (309)
.+.|+||||+.+.-...+ ....+-+.+.....-+++++ +|...+++. ..++.. +.-... ...|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~~~~-~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~-~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD-SGRKIVERLQKNGRLVVVFL--VDSSFCSDP-SKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHHSH-HHHHHHHTSSS----EEEEE--E-GGG-SSH-HHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEech-hHHHHHHHHhhhcceEEEEE--EecccccCh-hhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 589999999965333332 22223333333334456666 455444331 122221 111111 12699999999
Q ss_pred ccCCC
Q 021685 164 AQLSL 168 (309)
Q Consensus 164 ~D~~~ 168 (309)
+|+.+
T Consensus 166 ~Dl~~ 170 (238)
T PF03029_consen 166 IDLLS 170 (238)
T ss_dssp GGGS-
T ss_pred cCccc
Confidence 99975
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=75.04 Aligned_cols=124 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
=||+++|++|+||||+=-.++..-.+.-...++.|.+..+....+-| .-+.+||.-|... .-+.++..-+..+ -.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~---fmen~~~~q~d~i-F~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE---FMENYLSSQEDNI-FR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH---HHHHHHhhcchhh-he
Confidence 47999999999999987776654433333344555565555555444 6889999999831 1111111111100 14
Q ss_pred CCcEEEEEEeCCccccChhHHH----HHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQ----ITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~----~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+++++|+++....+ +.|.. .++.+.+.-. .-.+...++|.|+...+.
T Consensus 81 nV~vli~vFDves~e~-~~D~~~yqk~Le~ll~~SP---~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREM-EKDFHYYQKCLEALLQNSP---EAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhh-hhhHHHHHHHHHHHHhcCC---cceEEEEEeechhcccch
Confidence 7899999977764323 23333 3334443322 246778889999985543
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-07 Score=84.82 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 25 LLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 25 l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
|..+|+.+.+. +...+.|.+||.+|+||||+||+|-...++.+.+.++.|...+..++. +.|.+||+||+--.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyp 365 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYP 365 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCC
Confidence 44455555543 346799999999999999999999999999999999998865544332 36899999999643
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-05 Score=75.77 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988874
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-06 Score=77.77 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccC--CCCC-----------CCeeEEEEee-------------eCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVST--FQSE-----------GPRPVMVSRS-------------RAG 86 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~--~~~~-----------t~~~~~~~~~-------------~~g 86 (309)
.-.|+++|++|+||||++..|... .+..++. +... ..-+...... ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 346899999999999999887632 2211211 1110 0001111100 024
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||.. ..+.+.++.+..+.....+|.+++| +++ .....| ... +.+.|..- ...-+|+||.|.
T Consensus 286 ~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsa-g~~~~d--~~~-i~~~f~~l--~i~glI~TKLDE 354 (407)
T PRK12726 286 VDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSS-GMKSAD--VMT-ILPKLAEI--PIDGFIITKMDE 354 (407)
T ss_pred CCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCC-cccHHH--HHH-HHHhcCcC--CCCEEEEEcccC
Confidence 689999999994 3455666667666654567887788 443 222223 222 22223321 356788999997
Q ss_pred C
Q 021685 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 5
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-06 Score=77.77 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999888753
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-06 Score=88.86 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhhcCC---Cc----eEEEEEeCCCCCHHHHHHHHhCCCcccccCC--------CCCCCeeEEEEeeeC
Q 021685 21 TQTKLLELLGKLKQENV---NT----LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------QSEGPRPVMVSRSRA 85 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~---~~----l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~--------~~~t~~~~~~~~~~~ 85 (309)
+++++.+-+..++.... .. -=.+|+|.+|+||||+|+.- |-+. ..... .+.|. .|..- -
T Consensus 86 l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~---~c~ww-f 159 (1169)
T TIGR03348 86 LRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTR---NCDWW-F 159 (1169)
T ss_pred HHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCc---ccceE-e
Confidence 55666666666664321 11 12689999999999999876 4432 22110 01111 12221 2
Q ss_pred CeEEEEEeCCCCCCCCC----CcH----HHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhH--------HHHHHHHHHH
Q 021685 86 GFTLNIVDTPGLIEGGY----VNY----HAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLD--------KQITRAITDN 148 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~----~~~----~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d--------~~~l~~l~~~ 148 (309)
..+.+++||+|..-... .+. ..+..++++-..+.+|.||++++++.- .-++.+ +.-+.++.+.
T Consensus 160 ~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 160 TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23567999999764322 122 334444444445689999999876531 112222 3345566667
Q ss_pred hCccccCcEEEEEecccCC
Q 021685 149 FGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 149 ~g~~~~~~~iiV~tk~D~~ 167 (309)
+|-. .|+.+|+||+|+.
T Consensus 240 lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred hCCC--CCEEEEEecchhh
Confidence 7755 6999999999976
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=74.90 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHh--CCCcc-------------cccCC------CCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSII--GEKAV-------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~--g~~~~-------------~~~~~------~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+.+||-.+.+|||||.-.|+ |..+- .+|+. .+........++++++..++|+||||..
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 578999999999999997766 32211 11110 1111223345667899999999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+. +..++.+ .-+|+++.|++.- .++.+....+++ +.+..+ .|++-.+||+|-.
T Consensus 93 DFS---EDTYRtL------tAvDsAvMVIDaA-KGiE~qT~KLfe-VcrlR~----iPI~TFiNKlDR~ 146 (528)
T COG4108 93 DFS---EDTYRTL------TAVDSAVMVIDAA-KGIEPQTLKLFE-VCRLRD----IPIFTFINKLDRE 146 (528)
T ss_pred ccc---hhHHHHH------HhhheeeEEEecc-cCccHHHHHHHH-HHhhcC----CceEEEeeccccc
Confidence 653 2333333 3679999995542 246555555543 333333 6999999999963
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-05 Score=69.07 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+++.++.....+...|.|.|.+|+|||||+..|..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHH
Confidence 3467888888777889999999999999999988873
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=80.37 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccCCCCCCCe----------------eEEEEe----------eeCCeE
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPR----------------PVMVSR----------SRAGFT 88 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~~~~~t~~----------------~~~~~~----------~~~g~~ 88 (309)
--|+++|.+|+||||++..|.+.-... +.-....+.+ +..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 468999999999999998888642101 1000000000 000000 123457
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccc-cCcEEEEEecccCC
Q 021685 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQLS 167 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~-~~~~iiV~tk~D~~ 167 (309)
+.||||||.. ..+....+.+........++-+++|++... .. +.+..+.+.|.... ....=+|+||.|..
T Consensus 266 ~VLIDTAGRs---~~d~~l~eel~~l~~~~~p~e~~LVLsAt~---~~---~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMS---QRDRNVSEQIAMLCGVGRPVRRLLLLNAAS---HG---DTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCC---ccCHHHHHHHHHHhccCCCCeEEEEECCCC---cH---HHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 9999999983 333444444444333345677788843321 12 22333333332110 02345789999975
Q ss_pred C
Q 021685 168 L 168 (309)
Q Consensus 168 ~ 168 (309)
.
T Consensus 337 ~ 337 (767)
T PRK14723 337 T 337 (767)
T ss_pred C
Confidence 3
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8e-07 Score=81.72 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhcC--CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 24 KLLELLGKLKQEN--VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 24 ~l~~~~~~~~~~~--~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-+-++++..+..+ ...+++.|+|-+|+||||+||+|..+....+++.++.|+.-+.+. -+..|.|+|.||+.-.
T Consensus 235 ~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 235 TLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred HHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 3445555544432 357999999999999999999999999999999999887655443 3557999999999643
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.5e-06 Score=74.09 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc----------ccC----------------------CCCCCCeeEEEEeee
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VST----------------------FQSEGPRPVMVSRSR 84 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~----------~~~----------------------~~~~t~~~~~~~~~~ 84 (309)
...||++-+|...-||||||-+|+-..... .+. .++.|.+.....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 467999999999999999999998532111 010 011122222222223
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+++.|.||||.. ++ .+.... ...+|+.+++++.-. .+.++.++ -..+....|- +++++.+||
T Consensus 84 ~KRkFIiADTPGHe-------QY---TRNMaTGASTadlAIlLVDAR~-Gvl~QTrR-Hs~I~sLLGI---rhvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGHE-------QY---TRNMATGASTADLAILLVDARK-GVLEQTRR-HSFIASLLGI---RHVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcHH-------HH---hhhhhcccccccEEEEEEecch-hhHHHhHH-HHHHHHHhCC---cEEEEEEee
Confidence 56789999999982 22 222221 247898888855421 34333332 3345555564 799999999
Q ss_pred ccCCCCCC
Q 021685 164 AQLSLPDR 171 (309)
Q Consensus 164 ~D~~~~~~ 171 (309)
+|+.+=++
T Consensus 149 mDLvdy~e 156 (431)
T COG2895 149 MDLVDYSE 156 (431)
T ss_pred ecccccCH
Confidence 99974443
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.5e-06 Score=77.27 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc-----cccCCCCCCCe----------------eEEE----------EeeeCCe
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAV-----TVSTFQSEGPR----------------PVMV----------SRSRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~-----~~~~~~~~t~~----------------~~~~----------~~~~~g~ 87 (309)
.=.|+++|++|+||||++..|.+.... .+.-....+.+ +... .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 348999999999999999988764110 00000000000 0000 0012455
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+|||+|... .+....+.+..+......+-.++|++... ... .+..+...|..- ...=+++||.|..
T Consensus 271 d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~---~~~---~~~~~~~~f~~~--~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATS---SGD---TLDEVISAYQGH--GIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCC---CHH---HHHHHHHHhcCC--CCCEEEEEeeeCC
Confidence 789999999843 33344455554432234555667733321 122 223333444321 3556889999975
Q ss_pred C
Q 021685 168 L 168 (309)
Q Consensus 168 ~ 168 (309)
.
T Consensus 340 ~ 340 (420)
T PRK14721 340 A 340 (420)
T ss_pred C
Confidence 3
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-05 Score=73.40 Aligned_cols=119 Identities=21% Similarity=0.178 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCC--CC-----------CCeeEEEEe--------------ee
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQ--SE-----------GPRPVMVSR--------------SR 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~--~~-----------t~~~~~~~~--------------~~ 84 (309)
.+..|+++|.+|+||||++-.|.. ..+..++... .. ...+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999876652 2222111110 00 000111000 01
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||.. ..++..++.++.......+|.+++|++... .. +.+.... .|.... ...-+|+||.
T Consensus 174 ~~~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~-~F~~~l-~i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAK-AFHEAV-GIGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHH-HHHhcC-CCCEEEEecc
Confidence 23478999999984 345555555555443347888899955432 12 2233322 233221 2456889999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 243 D~~ 245 (437)
T PRK00771 243 DGT 245 (437)
T ss_pred cCC
Confidence 974
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6e-06 Score=68.67 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC--CeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG--PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t--~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-.++++++|..|.||+|++++.+..+.... ..++.+ .++.......+..++.+|||.|....+...+.++ |
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~-y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy--I---- 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKT-YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY--I---- 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceec-ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE--E----
Confidence 358999999999999999999987764222 222222 2232222223347899999999965443332211 1
Q ss_pred hcCCCcEEEEEEeCCccccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..-|.++++++.. +++ .+-.+|-+.+.+.++. .|++++.||.|..
T Consensus 82 ---~~qcAiimFdVts-r~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 82 ---QGQCAIIMFDVTS-RFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred ---ecceeEEEeeeee-hhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 3455566655654 332 4455677778888775 6999999999974
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-05 Score=66.18 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|..|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999864
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=76.49 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=59.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC--------CcccccCCCCC-------------CCeeEEEEe----------eeCCeEE
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE--------KAVTVSTFQSE-------------GPRPVMVSR----------SRAGFTL 89 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~--------~~~~~~~~~~~-------------t~~~~~~~~----------~~~g~~l 89 (309)
.++++|++|+||||++..|... .+..+...+.. ..-+..... ...+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl 302 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV 302 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence 7899999999999988766532 12111111100 000000000 1235679
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 90 NIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.||||||.. ..+......+..++. ....+-+.+|++.. ....+ +..+.+.|..- ...-+++||.|..
T Consensus 303 VlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~---~~~~~---l~~~~~~f~~~--~~~~vI~TKlDet 370 (424)
T PRK05703 303 ILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSAT---TKYED---LKDIYKHFSRL--PLDGLIFTKLDET 370 (424)
T ss_pred EEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECC---CCHHH---HHHHHHHhCCC--CCCEEEEeccccc
Confidence 999999983 334444445555543 22334455553332 22222 22333344321 2346889999974
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.9e-06 Score=67.07 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc-----ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~-----~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
+.+.|+|+|..++|||||+-++-..-. ..++.. .+|..-...+..+.+..+.+||.-|........+.++
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY---- 90 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY---- 90 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHHHHHHHHH----
Confidence 469999999999999999976653311 011111 1222233445566778899999999832222221111
Q ss_pred HhhhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 113 RFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|+++|+++... .++. .....++.+... ......|+++..||.|+.
T Consensus 91 -----~~~H~ii~viDa~~~eR~~-~~~t~~~~v~~~-E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 91 -----WLAHGIIYVIDATDRERFE-ESKTAFEKVVEN-EKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred -----HHhceeEEeecCCCHHHHH-HHHHHHHHHHHH-HHhcCCchhhhcchhhhh
Confidence 47799999966543 3342 223333333221 111126999999999974
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=69.40 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCC-----------C-CCe-eEEEEee-------------eCCe
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS-----------E-GPR-PVMVSRS-------------RAGF 87 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~-----------~-t~~-~~~~~~~-------------~~g~ 87 (309)
-+++++|++|+||||++..|.+. .+..++.... . ... +...... ..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 59999999999999998877643 1111111000 0 000 0000000 1256
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||.. ..+.+.++.+.+++....++-+++|.+.. ....| .++++ .|.. ...-=+++||.|.
T Consensus 156 D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~---~~~~d~~~~~~----~f~~--~~~~~~I~TKlDe 223 (270)
T PRK06731 156 DYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS---MKSKDMIEIIT----NFKD--IHIDGIVFTKFDE 223 (270)
T ss_pred CEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc---cCHHHHHHHHH----HhCC--CCCCEEEEEeecC
Confidence 89999999983 33445555565555445677788884432 12222 23333 3332 1456788999998
Q ss_pred CC
Q 021685 167 SL 168 (309)
Q Consensus 167 ~~ 168 (309)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 53
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=70.35 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||... .++...+.+......-.++-+++|++ +. ......+..+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVld--a~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVVD--AM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEEe--cc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45799999999843 34444444444333336778888844 31 1122333444444332 24567889999
Q ss_pred CC
Q 021685 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 64
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=68.49 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC----------CcccccCCC--C---------C--CCeeEEEEe----------ee
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE----------KAVTVSTFQ--S---------E--GPRPVMVSR----------SR 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~----------~~~~~~~~~--~---------~--t~~~~~~~~----------~~ 84 (309)
.+-.|+++|++|+||||++..|... .+..++... . . ...+..... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999777632 111111100 0 0 000111111 12
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC-CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~-~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
.+..+.||||||... .+...+..+.+++.... .+-+++|.+.+. ...+.. .+...|..- ...=+++||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~~~---~~~~~~~~~--~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSDVK---EIFHQFSPF--SYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHHHH---HHHHHhcCC--CCCEEEEEe
Confidence 456799999999853 34334555666554323 334667744332 222222 222333211 356788999
Q ss_pred ccCC
Q 021685 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9975
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=68.65 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..++++|.+|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988874
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-05 Score=73.87 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=73.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------eCCeEEEEEeCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------RAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~l~liDTPG~~~~ 100 (309)
..-+.|+|...+|||-|+..|-+.++ ..+...+.|.......+. +.-..+.+|||||...+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 35589999999999999999998865 334444443332211111 11124789999997322
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++..- ..-+|+.|+|+++- +++.+...+-+..|+..- .|+||.+||+|-
T Consensus 554 --------tnlRsrg-sslC~~aIlvvdIm-hGlepqtiESi~lLR~rk-----tpFivALNKiDR 604 (1064)
T KOG1144|consen 554 --------TNLRSRG-SSLCDLAILVVDIM-HGLEPQTIESINLLRMRK-----TPFIVALNKIDR 604 (1064)
T ss_pred --------hhhhhcc-ccccceEEEEeehh-ccCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence 2233221 14689999997764 357777777777776653 699999999985
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.9e-05 Score=72.72 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------C---------CCCCCeeEEEEee---eCCe--EEEEEeCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F---------QSEGPRPVMVSRS---RAGF--TLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~---------~~~t~~~~~~~~~---~~g~--~l~liDTPG 96 (309)
.-.+++++|.=++|||+|+..|.+......+. + .+++.+....+.- .+|+ -++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34789999999999999999998764311110 0 0111111111111 1222 478999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.-+ +.+ +....+ .-+|++++|+++-. .+.-...++++...+.. .++++|+||.|.
T Consensus 207 HVn--F~D-E~ta~l------~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~-----~~i~vviNKiDR 261 (971)
T KOG0468|consen 207 HVN--FSD-ETTASL------RLSDGVVLVVDVAE-GVMLNTERIIKHAIQNR-----LPIVVVINKVDR 261 (971)
T ss_pred ccc--chH-HHHHHh------hhcceEEEEEEccc-CceeeHHHHHHHHHhcc-----CcEEEEEehhHH
Confidence 943 333 333334 46799999977633 34434444554443332 799999999986
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=62.05 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=75.0
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+++++...+ .+++|+++|-.|+||+|+.-.+--.++..+-+.++.... ...+.+.++.+||.-|...-.-..
T Consensus 7 s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve----~v~yKNLk~~vwdLggqtSirPyW-- 79 (182)
T KOG0072|consen 7 SLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYW-- 79 (182)
T ss_pred HHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc----ccccccccceeeEccCcccccHHH--
Confidence 4566666544 569999999999999998766654443333333332222 344577789999999884322111
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
+.+. .+.|+++||++- |..+++..-.++...+.+.--.. -.++++.||.|.
T Consensus 80 -----RcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~ 131 (182)
T KOG0072|consen 80 -----RCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDY 131 (182)
T ss_pred -----HHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccc
Confidence 1112 588999999654 33345544455554444321111 356778899996
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00036 Score=66.65 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.|+||||... .++.....+..+...-.+|-+++|++.. ......+..+.+.+.. ...=+|+||.
T Consensus 181 ~~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 345799999999843 4444445554444334678888884432 1223334444444333 2456779999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 964
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=58.91 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.|+||||... .+...+..+..+.....++.+++|++.. . .....+.+..+.+..+ ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~--~-~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAM--T-GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECC--C-ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 55689999999842 2444455555444334589999996653 1 2233344545544433 3667789999
Q ss_pred CCCC
Q 021685 166 LSLP 169 (309)
Q Consensus 166 ~~~~ 169 (309)
....
T Consensus 151 ~~~~ 154 (173)
T cd03115 151 GDAR 154 (173)
T ss_pred CCCC
Confidence 7543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=79.04 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=72.9
Q ss_pred EEEEeCCCCCHHHHHHHHh-CCCcccccCCCCCCCe-eEEEEeeeCCeEEEEEeCCCCCCCCC----CcH----HHHHHH
Q 021685 42 ILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGY----VNY----HAIQLI 111 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~-g~~~~~~~~~~~~t~~-~~~~~~~~~g~~l~liDTPG~~~~~~----~~~----~~~~~i 111 (309)
-+|||++|+||||++..-- .-.........+.... +..|. -+-+..-++|||.|-.-... .+. ..+..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 5788999999999874322 1111111111111111 12222 12344688999999764332 222 234445
Q ss_pred HHhhhcCCCcEEEEEEeCCcc-ccChhHH-HH-------HHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHh
Q 021685 112 KRFLLNKTIDVLLYVDRLDVY-RVDNLDK-QI-------TRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 112 ~~~~~~~~~d~il~v~~~d~~-~~~~~d~-~~-------l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+++-..+.+|.|++.+++..- ..+..+. .. +++|.+.++-. .|+++++||.|+.+- +++|...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~G----F~efF~~ 278 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPG----FEEFFGS 278 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEeccccccc----HHHHHhc
Confidence 555556789999999776431 2333333 12 34444454433 699999999999732 4555443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.7e-05 Score=71.97 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++++|.+|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999888853
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=73.39 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=37.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-+++++|.+|+|||||+|.|+|.....++.... +|....... +.+ ...++||||+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~--l~~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP--LPS-GGLLIDTPGMRELQ 261 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE--ecC-CCeecCCCchhhhc
Confidence 479999999999999999999875544433221 222111111 111 23688999996543
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.3e-05 Score=61.72 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++++|..|+|||||++.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999999875
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=69.80 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=77.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...|+-++|+|++|+||||||.+|...- ..+.... -+-|++. ..-..+++++..+|. | .+ ..++..
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~--tk~ti~~-i~GPiTv-vsgK~RRiTflEcp~--D---l~-~miDva---- 131 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRF--TKQTIDE-IRGPITV-VSGKTRRITFLECPS--D---LH-QMIDVA---- 131 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHH--HHhhhhc-cCCceEE-eecceeEEEEEeChH--H---HH-HHHhHH----
Confidence 3457889999999999999999998642 1111111 1112221 112345799999982 1 11 112211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
.=+|+||+.++.. ..+.-...+++..+..+ |- ..++-|+|+.|+... ..++....+.....+-.-+.+.
T Consensus 132 --KIaDLVlLlIdgn-fGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 132 --KIADLVLLLIDGN-FGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred --HhhheeEEEeccc-cCceehHHHHHHHHhhc-CC---CceEEEEeecccccC-hHHHHHHHHHHhhhHHHHHcCC
Confidence 2469999994432 24666667777766655 32 578889999999733 2244444433334444444443
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=66.21 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC--------------CCCCCCeeEEEEeee-----------------
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------------FQSEGPRPVMVSRSR----------------- 84 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--------------~~~~t~~~~~~~~~~----------------- 84 (309)
...++.+.+.|..++|||||+-+|...+. .-++ ..+-+.+.....+.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~-DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRL-DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCC-CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34578999999999999999988875431 0000 001111111101111
Q ss_pred ------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021685 85 ------AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 85 ------~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.++-+.++||-|.. .+++..-+-+...++|-.++++..|. ..+...++-+..+... ..|++
T Consensus 193 ~~vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~-----~lPvi 259 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM-----ELPVI 259 (527)
T ss_pred hHhhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh-----cCCEE
Confidence 12236789999872 34443333444578999999988765 3444444433322222 16999
Q ss_pred EEEecccCCCC
Q 021685 159 IVLTHAQLSLP 169 (309)
Q Consensus 159 iV~tk~D~~~~ 169 (309)
+|+||+|..+.
T Consensus 260 VvvTK~D~~~d 270 (527)
T COG5258 260 VVVTKIDMVPD 270 (527)
T ss_pred EEEEecccCcH
Confidence 99999999743
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00049 Score=62.56 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~---------~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...++||.-+|....|||||.-+|+.- ..+. .....+.|....+..++-..+.+-=+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD- 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD- 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH-
Confidence 456799999999999999999888731 1111 111123344444455555677888999999833
Q ss_pred CCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021685 101 GYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+++..+.. ..-|..++|+...... -++.++-+ .|.+..|- .++++.+||+|+.+.. +.-+.+
T Consensus 130 ---------YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHl-LLArQVGV---~~ivvfiNKvD~V~d~--e~leLV- 192 (449)
T KOG0460|consen 130 ---------YIKNMITGAAQMDGAILVVAATDGP-MPQTREHL-LLARQVGV---KHIVVFINKVDLVDDP--EMLELV- 192 (449)
T ss_pred ---------HHHHhhcCccccCceEEEEEcCCCC-CcchHHHH-HHHHHcCC---ceEEEEEecccccCCH--HHHHHH-
Confidence 34444421 3568888887765423 34455444 34455565 5899999999997332 123333
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
.-++++++... +| .-+.+|++.=|+
T Consensus 193 --EmE~RElLse~-gf-----~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 193 --EMEIRELLSEF-GF-----DGDNTPVIRGSA 217 (449)
T ss_pred --HHHHHHHHHHc-CC-----CCCCCCeeecch
Confidence 34566666432 22 234589886554
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3e-05 Score=67.82 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
-++.++|-+.+||||+++.|+|... .+..+..+|-..+.....++|-++.+.|.||+.++..... +.+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav----- 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV----- 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-----
Confidence 3888999999999999999999753 5555666665555566668899999999999987543322 22221
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g 150 (309)
.+.++++++|.++- .. -..+++++.-.+.||
T Consensus 134 -artcnli~~vld~~--kp-~~hk~~ie~eleg~g 164 (358)
T KOG1487|consen 134 -ARTCNLIFIVLDVL--KP-LSHKKIIEKELEGFG 164 (358)
T ss_pred -eecccEEEEEeecc--Cc-ccHHHHHHHhhhcce
Confidence 25789999994432 21 235667776667776
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=66.78 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE--EEEEe
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA--LIVLT 162 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~--iiV~t 162 (309)
.|..+.+|||+|-. ..++..+..+.+++...++|.|++| -.+ -+......-+..+.+.++.....+. -+++|
T Consensus 465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~v--gea-lvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFV--GEA-LVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred cCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEe--hhh-hhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 46779999999983 3344566677788888899999999 332 1212222334444444443221222 47899
Q ss_pred cccCC
Q 021685 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 539 k~dtv 543 (587)
T KOG0781|consen 539 KFDTV 543 (587)
T ss_pred eccch
Confidence 99975
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=68.09 Aligned_cols=138 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHH-hhhcC---CCceEEEEEeCCCCCHHHHHHHHh------CCCcccccCC-----------------
Q 021685 18 PPATQTKLLELLGK-LKQEN---VNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTF----------------- 70 (309)
Q Consensus 18 ~~~~~~~l~~~~~~-~~~~~---~~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~----------------- 70 (309)
-..+.++|.+++.. -.+.. ..|..|+++|-.|+||||+.-.|. |..+..++..
T Consensus 75 iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 75 IKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc
Confidence 34566777777774 11111 237889999999999999875554 2222112110
Q ss_pred -----CC-CCCeeEEE------EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021685 71 -----QS-EGPRPVMV------SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 71 -----~~-~t~~~~~~------~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
+. ...+|... .....+..+.||||+|- -..+++..+.++.....-+||-+|+|++.. .-..-
T Consensus 155 ~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGR---l~ide~Lm~El~~Ik~~~~P~E~llVvDam---~GQdA 228 (451)
T COG0541 155 GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGR---LHIDEELMDELKEIKEVINPDETLLVVDAM---IGQDA 228 (451)
T ss_pred CCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc---ccccHHHHHHHHHHHhhcCCCeEEEEEecc---cchHH
Confidence 00 01111100 00123457999999998 445666666666555556899999994432 11223
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 139 KQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
....+.+.+..+ -+=+|+||.|.
T Consensus 229 ~~~A~aF~e~l~-----itGvIlTKlDG 251 (451)
T COG0541 229 VNTAKAFNEALG-----ITGVILTKLDG 251 (451)
T ss_pred HHHHHHHhhhcC-----CceEEEEcccC
Confidence 344455554432 34466677764
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=65.13 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=96.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc---------------------CCCCC------------CCeeEEEEee-
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---------------------TFQSE------------GPRPVMVSRS- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~---------------------~~~~~------------t~~~~~~~~~- 83 (309)
..++|.-+|....||||++.++.|-....-. +.+.| +.+...+...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4699999999999999999999884210000 00001 0000011100
Q ss_pred eCC-----eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHH--HHHHhCccccC
Q 021685 84 RAG-----FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRA--ITDNFGEQIWK 155 (309)
Q Consensus 84 ~~g-----~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~--l~~~~g~~~~~ 155 (309)
..| +.+.++|+||. .++. ...+.. .--|+.|+.+....+...++..+-+-. +.+. +
T Consensus 117 ~~~~~klvRHVSfVDCPGH--------DiLM--aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------k 180 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGH--------DILM--ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------K 180 (466)
T ss_pred CCCceEEEEEEEeccCCch--------HHHH--HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------c
Confidence 011 25789999998 1111 111100 123666777555544333333332222 2233 7
Q ss_pred cEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHH
Q 021685 156 RALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPN 235 (309)
Q Consensus 156 ~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~ 235 (309)
+++++-||.|+..+.. ..+ ..+.+..++... .+.+.|++++++.-.+ .++.
T Consensus 181 hiiilQNKiDli~e~~-A~e-----q~e~I~kFi~~t--------~ae~aPiiPisAQlky---------------NId~ 231 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQ-ALE-----QHEQIQKFIQGT--------VAEGAPIIPISAQLKY---------------NIDV 231 (466)
T ss_pred eEEEEechhhhhhHHH-HHH-----HHHHHHHHHhcc--------ccCCCceeeehhhhcc---------------ChHH
Confidence 9999999999973321 122 236777777654 2345799999875222 1677
Q ss_pred HHHHHHHHHhcCCCcceeccc
Q 021685 236 LVKTITEVVLNGSKALLVDKK 256 (309)
Q Consensus 236 L~~~i~~~~~~~~~~~~~~~~ 256 (309)
+.+.|..-++--.+.+....+
T Consensus 232 v~eyivkkIPvPvRdf~s~pr 252 (466)
T KOG0466|consen 232 VCEYIVKKIPVPVRDFTSPPR 252 (466)
T ss_pred HHHHHHhcCCCCccccCCCCc
Confidence 888888777766666544443
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.9e-05 Score=75.47 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=76.7
Q ss_pred HHHHHHHHhh-hcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE-----------------------
Q 021685 24 KLLELLGKLK-QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM----------------------- 79 (309)
Q Consensus 24 ~l~~~~~~~~-~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----------------------- 79 (309)
.+.+.+..+. +....-..|+|+|..++||||.++++.|.+..+-+. .-.|+.|..
T Consensus 13 ~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~-givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~ 91 (657)
T KOG0446|consen 13 PLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGV-GIVTRRPLILQLSIVAGGDEEEASFLTHDKKK 91 (657)
T ss_pred HHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccc-cceecccceeecccccCCcccchhcccccccc
Confidence 3444455554 322345789999999999999999999975422221 111111111
Q ss_pred --------------------------------EEeee-CCeEEEEEeCCCCCCC------CCCcHHHHHHHHHhhhcCCC
Q 021685 80 --------------------------------VSRSR-AGFTLNIVDTPGLIEG------GYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 80 --------------------------------~~~~~-~g~~l~liDTPG~~~~------~~~~~~~~~~i~~~~~~~~~ 120 (309)
..... +-.++++||+||+-.. .....++...+..++ ...
T Consensus 92 ~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~ 169 (657)
T KOG0446|consen 92 RFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKP 169 (657)
T ss_pred ccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--ccc
Confidence 00000 1124789999999752 223334555555555 577
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+++++.+.... .+-.....++...+.-..+ ..++-|+||+|+.+.
T Consensus 170 ~~iILav~~an--~d~ats~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 170 NRIILAVTPAN--SDIATSPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred chhhhhccchh--hhhhcCHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 88777743322 1111122333333332222 689999999998644
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=55.33 Aligned_cols=117 Identities=18% Similarity=0.094 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-.++|.++|.+..|||||+-...|.... .......+..+...+....|. .+.|||.-|..+.... + -+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~-------l--Pi 88 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM-------L--PI 88 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc-------C--ce
Confidence 4699999999999999999888887531 222222233333334444544 5689999998432111 1 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++-++||+++++...- --.+.++.++..|-+-.---|+|+||-|..
T Consensus 89 ac~dsvaIlFmFDLt~r~T---LnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRST---LNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred eecCcEEEEEEEecCchHH---HHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 2257788899988764221 222344444444422112347789999863
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=58.96 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-+-|.|+|.+|+|||||++.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999888764
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=70.56 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=68.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC---------------CCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE---------------GPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~---------------t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
--+|.++.....|||||+.+|+..+....+..++. |-..........+..+++||+||.-|+...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 35788999999999999999998765333332221 212222233346778999999999776432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
-. ... .=+|..++.+++-. ++..+....++..-.. . ...++|+||+|
T Consensus 89 vs---sas------~l~d~alvlvdvve-gv~~qt~~vlrq~~~~---~--~~~~lvinkid 135 (887)
T KOG0467|consen 89 VS---SAS------RLSDGALVLVDVVE-GVCSQTYAVLRQAWIE---G--LKPILVINKID 135 (887)
T ss_pred hh---hhh------hhcCCcEEEEeecc-ccchhHHHHHHHHHHc---c--CceEEEEehhh
Confidence 21 111 23455555544432 4555555555532211 1 57999999999
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00061 Score=55.60 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.0
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 021685 42 ILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g 61 (309)
|.++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988874
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00066 Score=62.43 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++|+|...+|||||+--|+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeec
Confidence 679999999999999998777643
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0022 Score=60.28 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.+.+.++....+-|.|||+..+||||||.++..
T Consensus 6 iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 6 IYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred HHHHHHHhcCCceEEEeecCcccCchhHHHHHHH
Confidence 4555666666789999999999999999999884
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00083 Score=61.21 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC------CcccccC----------------------CC-CCCCeeEEEEe-----
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST----------------------FQ-SEGPRPVMVSR----- 82 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~----------------------~~-~~t~~~~~~~~----- 82 (309)
..+.-|+++|-.|+||||.|-.|... ++..... .. ..+.+|....+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34899999999999999998766621 1100000 00 01111111000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh---cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021685 83 -SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 83 -~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~---~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.-.|..+.|+||+|-......--.-++.+.+.+. ...+|-++++.+... -..-..-.+.+.+..+ -.=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav~-----l~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAVG-----LDG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhcC-----Cce
Confidence 1246679999999985433222222333433331 134677888844321 1222333444444432 356
Q ss_pred EEEecccCC
Q 021685 159 IVLTHAQLS 167 (309)
Q Consensus 159 iV~tk~D~~ 167 (309)
+++||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 889999964
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00013 Score=67.66 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|.|+....+||||+..+|+=-..+. +.+ ..+.|.......+.|.|.++.+|||||.-|+..
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 378999999999999988776221111 111 123344455567788999999999999987765
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.-+..+. -.|.++.|++..+ .+..+....-+.- ..+..|.+..+||+|..
T Consensus 118 everclr---------vldgavav~dasa-gve~qtltvwrqa-----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 118 EVERCLR---------VLDGAVAVFDASA-GVEAQTLTVWRQA-----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred EHHHHHH---------HhcCeEEEEeccC-Ccccceeeeehhc-----cccCCchhhhhhhhhhh
Confidence 5444443 3477788855543 3433332222111 12236788889999974
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00065 Score=62.45 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=69.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc------cccC------CC-CCCCeeEEE-Eeee-------------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV------TVST------FQ-SEGPRPVMV-SRSR------------------- 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~------~~~~------~~-~~t~~~~~~-~~~~------------------- 84 (309)
-++|++|+|.-.+|||||+--|+....- ...- .. +.|. ++.. .+.+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS-sis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS-SISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc-ccchhcccccccccccchhhcccHHHHH
Confidence 4689999999999999999888754320 0000 00 1111 1100 0000
Q ss_pred --CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 85 --AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 85 --~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
..+-++++|.+|....... .-.-+..-.+|+.++|++.+. .++....+-+..+...- .|+.+++|
T Consensus 245 e~SSKlvTfiDLAGh~kY~~T-------Ti~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvt 311 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKT-------TIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVT 311 (591)
T ss_pred hhhcceEEEeecccchhhhee-------eeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEE
Confidence 1123789999987332111 111122246788888877764 45555555555554432 79999999
Q ss_pred cccCCCCCC
Q 021685 163 HAQLSLPDR 171 (309)
Q Consensus 163 k~D~~~~~~ 171 (309)
|+|+..+..
T Consensus 312 K~Dl~~~~~ 320 (591)
T KOG1143|consen 312 KMDLVDRQG 320 (591)
T ss_pred eeccccchh
Confidence 999986543
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=58.58 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCccccc-------CC------CCCCCeeEEEEee---------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVS-------TF------QSEGPRPVMVSRS--------------- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~-------~~------~~~t~~~~~~~~~--------------- 83 (309)
.+--|+++|-.|+||||.+-.|.- .....+. .+ ..-+.-|....+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 355699999999999999876662 1111111 00 0001122222211
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEe
Q 021685 84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDR 128 (309)
Q Consensus 84 -~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~ 128 (309)
.++..+.|+||.|-. ..+...++.+++....-++|-+|+|.+
T Consensus 180 Kke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred HhcCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 246689999999983 344455666666655568999999943
|
|
| >PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=56.58 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred hhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-cccccCC-CCCCCeeEEEEe---eeCCeEEEEEeCCCCCCC
Q 021685 32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTF-QSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 32 ~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~-~~~t~~~~~~~~---~~~g~~l~liDTPG~~~~ 100 (309)
+...+..-.-|.|+|...+|||.|+|.|++.. .+.+++. .++|.-.-.... ...+..+.++||.|+++.
T Consensus 14 l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 14 LQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp HCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred HhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 33333333567899999999999999999853 3444443 234443222211 124568999999999883
|
GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0047 Score=59.93 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
+++-++..|+|+.++|||.++++++|+.... +...........-.....| ..+.+-|.+-. +.+...++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k------- 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK------- 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc-------
Confidence 3456999999999999999999999986543 2222222221111222222 24555555433 22222211
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++.++++.... .-...+..+.+.+-.....|+++|.+|+|+-
T Consensus 493 ---e~~cDv~~~~YDsS~p----~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 ---EAACDVACLVYDSSNP----RSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred ---cceeeeEEEecccCCc----hHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 1367999999665421 2222333333322222337999999999973
|
|
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.005 Score=56.46 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=46.7
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
-||||+|+.++... ...+. .+..-++|+++++ +. + ++...+.+.++...|. -++-+-|.+.+-.
T Consensus 215 ~iInT~g~i~~egy-~~llh----ai~~f~v~vviVL---g~------E-rLy~~lkk~~~~~~~v-~vv~lpKsgGv~~ 278 (415)
T KOG2749|consen 215 CIINTCGWIEGEGY-AALLH----AIKAFEVDVVIVL---GQ------E-RLYSSLKKDLPPKKNV-RVVKLPKSGGVVA 278 (415)
T ss_pred eEEeccceeccccH-HHHHH----HHHHcCccEEEEe---cc------H-HHHHHHHhhccccccc-eEEEecCCCCeEe
Confidence 48999999763222 12222 3333578888777 42 2 6777888887744333 3455677776533
Q ss_pred CCCCHHHHHHhhhHHHHHhhcc
Q 021685 170 DRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
....+.+- .+...+++.+..
T Consensus 279 Rs~~~r~~--~r~~~I~eYFYG 298 (415)
T KOG2749|consen 279 RSKEVRRK--LRGRSIREYFYG 298 (415)
T ss_pred ehHHHHHH--HhhhhHHHhccc
Confidence 32222221 234667777654
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0062 Score=49.92 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC---CcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCC-CCC---------C---
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE---KAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTP-GLI---------E--- 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~---~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTP-G~~---------~--- 99 (309)
..++|.|.|++|+||||++..+... +.+.++-+ .+.....+|. -+.|+|+. |-. .
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf-------~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF-------ITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE-------EeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 4699999999999999998777642 21222211 1112223343 35666666 211 0
Q ss_pred CC-CCcHHH-----HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 100 GG-YVNYHA-----IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 100 ~~-~~~~~~-----~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+. ..+-+. ...+++.+ ..+|++++= -+. ...-....+.+.+.+.+..+ +|++.++-+-+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~--~~aDvIIID-EIG--pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRAL--EEADVIIID-EIG--PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHh--hcCCEEEEe-ccc--chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 00 111122 22333333 346755432 222 23333456777777777654 68777777543
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0044 Score=49.88 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=54.6
Q ss_pred EEeCCCCCHHHHHHHHhCC------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 44 VMGKGGVGKSSTVNSIIGE------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~------~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.-|+.|+|||++.-.+... ....+...+..+.- ...+.|+|||+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~-----~~~~~~l------ 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGIS-----DNVLDFF------ 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCC-----HHHHHHH------
Confidence 4578999999986555422 11111111111100 15789999998532 2222333
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+|.++++...+...+. .-..+++.+.+..+. .++.+|+|+++.
T Consensus 65 ~~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~~---~~~~lVvN~~~~ 109 (139)
T cd02038 65 LAADEVIVVTTPEPTSIT-DAYALIKKLAKQLRV---LNFRVVVNRAES 109 (139)
T ss_pred HhCCeEEEEcCCChhHHH-HHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 477999999555532221 123455566554322 578899999863
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0059 Score=56.49 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=47.3
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-cChhH------HHHHHHHHHHhCc
Q 021685 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD------KQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d------~~~l~~l~~~~g~ 151 (309)
.+.+.+.+.++.++|.+|... ...+... +-.++++||||+++.... ....| .+-++.+...+..
T Consensus 187 e~~F~~k~~~f~~~DvGGQRs---eRrKWih------cFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQRS---ERKKWIH------CFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred EEEEEeCCCceEEEeCCCcHH---HhhhHHH------hhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 355567788899999999732 1112221 226999999998876542 22222 2223333333332
Q ss_pred c--ccCcEEEEEecccCC
Q 021685 152 Q--IWKRALIVLTHAQLS 167 (309)
Q Consensus 152 ~--~~~~~iiV~tk~D~~ 167 (309)
. ...++|+.+||.|+.
T Consensus 258 ~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLF 275 (354)
T ss_pred cccccCcEEEEeecHHHH
Confidence 1 124789999999985
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00026 Score=59.31 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 94 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDT 94 (309)
..=++|.|++|+||||+++.|+.... ..-....||+.+. ..+.+|+.+.+++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR--~gEv~G~dY~Fvs~ 56 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPR--PGEVDGVDYFFVTE 56 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCC--CCCcCCceeEeCCH
Confidence 35688999999999999999998762 2223344555443 23556776666543
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+++|.+|+|||+++.++...
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcC
Confidence 58999999999999999998544
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0024 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999854
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999964
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.005 Score=54.08 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+...-++++.|..|+||||++.+++.+-. . .| +.+|..+.-. . ..+..+-..+
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~-~------------------~G--LRlIev~k~~---L---~~l~~l~~~l 101 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYA-D------------------QG--LRLIEVSKED---L---GDLPELLDLL 101 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHh-h------------------cC--ceEEEECHHH---h---ccHHHHHHHH
Confidence 45668999999999999999999996421 0 11 3344433210 0 1111222333
Q ss_pred hcCCCcEEEEEEeCCccccChh--HHHHHHHHHHHhCccccCcEEEEEe
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNL--DKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~--d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
.......||||+++ +|.+. +...++.+.+.--.....++++..|
T Consensus 102 ~~~~~kFIlf~DDL---sFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 102 RDRPYKFILFCDDL---SFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred hcCCCCEEEEecCC---CCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 33456777777544 34433 3555666655422333357777776
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0006 Score=58.11 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-++|+|+.|+||||+.+++..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999999974
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0062 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|.|.|++|+|||||+-.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 8999999999999999977764
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=58.28 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++..+.. ...+|+|.|.+|+|||||+|+|+..
T Consensus 149 ~~~~L~~~v~---~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 149 IKEFLEHAVI---SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHHHHH---cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 4445544444 4588999999999999999999964
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00095 Score=53.70 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
|+|+|++|+||||+++.|...-.. .....+.+|+.+.. .+.+|.++.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~--~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRP--GEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCC--CccCCceeEEeCHHHH
Confidence 689999999999999999976211 11222334444322 2346667777764443
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0012 Score=56.11 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liD 93 (309)
+.=|+|+|++|+||||+++.|+..........+.+|+.+. ..+.+|....+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fvs 56 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFLT 56 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeCC
Confidence 4668999999999999999999764222233344555432 2334555555543
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=47.40 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999999974
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0011 Score=57.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+=-+|+|+||+||||..|.+.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345899999999999987654
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0049 Score=53.72 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
-+|+++|.-.+||||+-.-.+..-.....-+-..|..+..-.+.-.-.++.+||.||..+.-...-.....+ ++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~~ 101 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------RG 101 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------hc
Confidence 569999999999999988777542100000111122211111111123688999999876422222222223 47
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+-+++||++.-. ..-+.-.++...+.+...-+...++=+.+.|+|....
T Consensus 102 ~gALifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 102 VGALIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred cCeEEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 889999954321 1111112222223333322333456678899997633
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.005 Score=51.74 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+....||.|.|..+....- .....+. ..-..+.++.|++. .++.. ....-..+.+... .-=++|+||+|
T Consensus 84 ~~d~IiIE~sG~a~p~~l~-~~~~~~~---~~~~~~~iI~vVDa--~~~~~-~~~~~~~~~~Qi~----~ADvIvlnK~D 152 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLI-LQDPPLK---EDFRLDSIITVVDA--TNFDE-LENIPELLREQIA----FADVIVLNKID 152 (178)
T ss_dssp C-SEEEEEEECSSGGGGHH-HHSHHHH---HHESESEEEEEEEG--TTHGG-HTTHCHHHHHHHC----T-SEEEEE-GG
T ss_pred CcCEEEECCccccccchhh-hcccccc---ccccccceeEEecc--ccccc-cccchhhhhhcch----hcCEEEEeccc
Confidence 3568899999986654440 0011111 12367888888544 33321 1122222233322 34589999999
Q ss_pred CC
Q 021685 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
+.
T Consensus 153 ~~ 154 (178)
T PF02492_consen 153 LV 154 (178)
T ss_dssp GH
T ss_pred cC
Confidence 86
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00058 Score=57.20 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.|+|+|++|+||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999999864
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0043 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
+++++|++|+|||||+|.|.|--.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 689999999999999999999753
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=42.38 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 118 KTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
.=.++|+|+++++... .+ +....+++.++..|+. +|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 3468999998886653 43 3456788999999965 79999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=42.44 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=40.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
+++.|..|+||||+...+...=. . ...+... .+ .+.++|+||..+..... ..... ..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-~------~g~~v~~----~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-K------RGKRVLL----ID--DYVLIDTPPGLGLLVLL--CLLAL------LAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H------CCCeEEE----EC--CEEEEeCCCCccchhhh--hhhhh------hhCC
Confidence 67889999999999988875311 0 0111111 11 78999999985432210 01111 4778
Q ss_pred EEEEEEeCC
Q 021685 122 VLLYVDRLD 130 (309)
Q Consensus 122 ~il~v~~~d 130 (309)
.++++...+
T Consensus 61 ~vi~v~~~~ 69 (99)
T cd01983 61 LVIIVTTPE 69 (99)
T ss_pred EEEEecCCc
Confidence 888885544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0076 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++..... ...+|+|.|.+|+|||||+|+|++.
T Consensus 151 ~~~~l~~~v~---~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 151 LEAFLHACVV---GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHHHHHHHHH---cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3444554444 4689999999999999999999976
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00087 Score=63.92 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=50.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE----EeeeCC--eEEEEE-----eCCCCCCCCCCcHHHH
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV----SRSRAG--FTLNIV-----DTPGLIEGGYVNYHAI 108 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~----~~~~~g--~~l~li-----DTPG~~~~~~~~~~~~ 108 (309)
=+++++|.+|+|||||+|.|.+.....+..+...+.+.... .....+ .+-.+| |+||........ .
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~---a 234 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFC---A 234 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHH---H
Confidence 47899999999999999999975422222111111111110 001122 145667 888874432221 2
Q ss_pred HHHHHhhhcCCCcEEEEEEeCC
Q 021685 109 QLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 109 ~~i~~~~~~~~~d~il~v~~~d 130 (309)
..+.+++.+.+-|++|++++++
T Consensus 235 ~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 235 MSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHcCCCEEEecccch
Confidence 3445566667899999986665
|
|
| >COG1341 Predicted GTPase or GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0089 Score=55.88 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=31.0
Q ss_pred cCCCChhhHHHHHHHHHHhhh---cCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 14 IQQFPPATQTKLLELLGKLKQ---ENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~---~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-..|....+.+.++....++ ....+-+++|+|..++|||||.+.|++
T Consensus 45 ~ve~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 45 LVEVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cccCchHhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 445565555555444443222 233568999999999999998755554
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.017 Score=43.60 Aligned_cols=71 Identities=25% Similarity=0.395 Sum_probs=39.0
Q ss_pred EEEEe-CCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 42 ILVMG-KGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 42 I~vvG-~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
|++.| +.|+||||+.-.|...-. . . ..+....... ....+.|+|||+... ......+ ..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~----~--~~~vl~~d~d-~~~d~viiD~p~~~~-----~~~~~~l------~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-R----R--GKRVLLIDLD-PQYDYIIIDTPPSLG-----LLTRNAL------AAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-h----C--CCcEEEEeCC-CCCCEEEEeCcCCCC-----HHHHHHH------HHC
Confidence 56666 689999998765553210 0 0 0111111111 115789999999742 1222333 367
Q ss_pred cEEEEEEeCCc
Q 021685 121 DVLLYVDRLDV 131 (309)
Q Consensus 121 d~il~v~~~d~ 131 (309)
|.++++.+.+.
T Consensus 63 d~viv~~~~~~ 73 (104)
T cd02042 63 DLVLIPVQPSP 73 (104)
T ss_pred CEEEEeccCCH
Confidence 99999955543
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.023 Score=43.47 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=50.1
Q ss_pred EeCCCCCHHHHHHHHhCC-------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 45 MGKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~-------~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
=++.|+||||+.-.|... ++...+..+.. +-.+.|+|||+... ......+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~-----~~~~~~l------ 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLD-----EVSLAAL------ 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcC-----HHHHHHH------
Confidence 356999999987655532 21111111111 11799999998743 1222223
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+|.++++...+...+ ..-..+++.+.+. +.....++.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSI-RNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHH-HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 36799999966553222 1223445555443 32111467788775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0019 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.-|+|+|.+|+||||+++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4677899999999999999999854
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0015 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999975
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0015 Score=44.83 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021685 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998775
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0012 Score=57.83 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
-|.++|+||+|||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999653
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0016 Score=55.85 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.|+|+|.+|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999864
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=55.38 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+.+..+......++-|+|.|.+|+|||||++.|.+.-
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333333334568999999999999999999999753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0014 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||+|-+.|-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 68999999999999999999864
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0021 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.|+|.|.+|+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
|
... |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0034 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.++++|++|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999999863
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.03 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.817 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+.|+|.|+.|+||||+.-.|.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999764443
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.029 Score=46.47 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||.... .....+ ..+|.++++...+...+.. -..+++.+.+. +. ....+|+|+++.
T Consensus 64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~~-~~~~~~~~~~~-~~---~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLRD-ADRVKGLLEAL-GI---KVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHHH-HHHHHHHHHHc-CC---ceEEEEEeCCcc
Confidence 7999999976321 222223 3778899986655432221 12344455442 21 457789999875
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0098 Score=55.43 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcc-----------------cccC-------C------CCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-----------------TVST-------F------QSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~-----------------~~~~-------~------~~~t~~~~~~~~~~~g 86 (309)
..+++++++|...+||||+-..|+..... ..+- . .+-|.......++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 46799999999999999998887753110 0000 0 0112222223334456
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc----ccChh-HHHHHHHHHHHhCccccCcEEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RVDNL-DKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~----~~~~~-d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
+.+++.|+||.-. +..+ .+... .++|+-++|+++-.. .|... +.+---.+.+..|. ++.|+++
T Consensus 157 ~~ftiLDApGHk~--fv~n-mI~Ga------sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~v 224 (501)
T KOG0459|consen 157 KRFTILDAPGHKS--FVPN-MIGGA------SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVLI 224 (501)
T ss_pred eeEEeeccCcccc--cchh-hcccc------chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEEE
Confidence 6899999999833 2221 11111 366777777444111 12111 12222233444454 6899999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhc
Q 021685 162 THAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (309)
||+|- +..+++.+.| +++.+.+..+++
T Consensus 225 NKMdd-PtvnWs~eRy-~E~~~k~~~fLr 251 (501)
T KOG0459|consen 225 NKMDD-PTVNWSNERY-EECKEKLQPFLR 251 (501)
T ss_pred EeccC-CccCcchhhH-HHHHHHHHHHHH
Confidence 99985 3344443333 233456666665
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.002 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
-++|+|++|+|||||+|.|-|-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 479999999999999999988653
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.03 Score=43.94 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.029 Score=48.84 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.++|.+|.|+++...++. ..+-++.|.+..| .+++.+|+||+|.
T Consensus 154 ~~vD~vivVvDpS~~sl~--taeri~~L~~elg---~k~i~~V~NKv~e 197 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLR--TAERIKELAEELG---IKRIFVVLNKVDE 197 (255)
T ss_pred cCCCEEEEEeCCcHHHHH--HHHHHHHHHHHhC---CceEEEEEeeccc
Confidence 578999999555432221 1122333333334 2799999999984
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0036 Score=60.95 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|.+.-.-.+||||+-+.++-.... ..+. ..+.|....-....|...++++|||||..|+..
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 36888888899999999888732110 0111 112232333344567788999999999988766
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.-+..+..+ |.+++|...-+ +...+....-+.+.+. + .|-|..+||+|-..
T Consensus 120 EVeRALrVl---------DGaVlvl~aV~-GVqsQt~tV~rQ~~ry-~----vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 120 EVERALRVL---------DGAVLVLDAVA-GVESQTETVWRQMKRY-N----VPRICFINKMDRMG 170 (721)
T ss_pred Eehhhhhhc---------cCeEEEEEccc-ceehhhHHHHHHHHhc-C----CCeEEEEehhhhcC
Confidence 555554433 44444422211 3434444444444433 3 68888999999753
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.034 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0089 Score=60.74 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+|+++|++|+|||||.+-|.|--
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999864
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0028 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.045 Score=44.57 Aligned_cols=44 Identities=32% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++... .....+..+...+.. .+ +|+++|+||+|+.
T Consensus 11 ~~aD~vl~V~D~~~-~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~ 54 (156)
T cd01859 11 KESDVVLEVLDARD-PELTRSRKLERYVLE-LG----KKLLIVLNKADLV 54 (156)
T ss_pred hhCCEEEEEeeCCC-CcccCCHHHHHHHHh-CC----CcEEEEEEhHHhC
Confidence 47899999976532 223334444443322 12 7999999999985
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0039 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++++|+|++|+|||+|+-.|+..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 6799999999999999999988854
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.026 Score=60.84 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.++|+|++|+|||||+.+++|+=
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578999999999999999999984
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0038 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+|+|.||+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999866
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.018 Score=46.32 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=32.5
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|+++.. ..+..+..+.+.+.... . .+|+++|+||+|+.
T Consensus 10 ~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~--~k~~iivlNK~DL~ 55 (141)
T cd01857 10 ERSDIVVQIVDARN-PLLFRPPDLERYVKEVD-P--RKKNILLLNKADLL 55 (141)
T ss_pred hhCCEEEEEEEccC-CcccCCHHHHHHHHhcc-C--CCcEEEEEechhcC
Confidence 58999999977643 24445556666665542 1 27999999999985
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.006 Score=56.20 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+|+|.|.+|+|||||+|+|++.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0044 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+++|.+|+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
... |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0073 Score=50.34 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=22.2
Q ss_pred HHHHHHHh-hhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 25 LLELLGKL-KQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~-~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.++...+ ......+-.++|.|.+|+|||+|++.+...
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444 233345678999999999999999998854
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0097 Score=51.86 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=33.2
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-..++++...-.+.+...+..+.......-.+++.|++|+|||+|++++...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556665533233344444444332223356899999999999999999864
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=46.94 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=69.8
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEE
Q 021685 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l 89 (309)
-|.|....... .+.|.+++.. ......-.++++|.||.|||++++.+....... .+ + . ....++
T Consensus 35 rWIgY~~A~~~-L~~L~~Ll~~--P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~--~---------~~~~PV 98 (302)
T PF05621_consen 35 RWIGYPRAKEA-LDRLEELLEY--PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-E--D---------AERIPV 98 (302)
T ss_pred CeecCHHHHHH-HHHHHHHHhC--CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-C--C---------CccccE
Confidence 36665443322 2334444443 122334679999999999999999998654211 11 0 0 012367
Q ss_pred EEEeCCCCCCCC-----------------CCcHHHHHHHHHhhhcCCCcEEEEEEe-CCc--cccChhHHHHHHHHHHHh
Q 021685 90 NIVDTPGLIEGG-----------------YVNYHAIQLIKRFLLNKTIDVLLYVDR-LDV--YRVDNLDKQITRAITDNF 149 (309)
Q Consensus 90 ~liDTPG~~~~~-----------------~~~~~~~~~i~~~~~~~~~d~il~v~~-~d~--~~~~~~d~~~l~~l~~~~ 149 (309)
..+.+|.-.+.. ....+....+...+..-++. ++++| +.. .+-......++..|+..
T Consensus 99 v~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vr--mLIIDE~H~lLaGs~~~qr~~Ln~LK~L- 175 (302)
T PF05621_consen 99 VYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVR--MLIIDEFHNLLAGSYRKQREFLNALKFL- 175 (302)
T ss_pred EEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCc--EEEeechHHHhcccHHHHHHHHHHHHHH-
Confidence 788887664411 11111111222233323444 34422 110 01112345566666555
Q ss_pred CccccCcEEEEEecc
Q 021685 150 GEQIWKRALIVLTHA 164 (309)
Q Consensus 150 g~~~~~~~iiV~tk~ 164 (309)
|.+...|+|.|+|.-
T Consensus 176 ~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 176 GNELQIPIVGVGTRE 190 (302)
T ss_pred hhccCCCeEEeccHH
Confidence 666668999998854
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0045 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988854
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0046 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0047 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
=.++|+|++|+|||||+|.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999999984
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0049 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.00013 Score=60.72 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe---EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF---TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~---~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
++++|+|.-|+||+|++...+.... ..++..+ ..+.......++.. ++.+||.+|...++... +.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt---------rV 94 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT---------RV 94 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE---------EE
Confidence 6899999999999999988876542 1111111 11111112233333 56899999997555433 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHH----HhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITD----NFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~----~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|+..+|++++.+.-.+....+.+.+-. -+|.. .|+++..||||..
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~P--v~~vllankCd~e 148 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTP--VPCVLLANKCDQE 148 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCc--chheeccchhccC
Confidence 33688999999888754322222334333322 22333 5789999999973
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0055 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0054 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0055 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0055 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998753
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.014 Score=55.77 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCC---------------eeEEEEe----------------eeCCe
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---------------RPVMVSR----------------SRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~---------------~~~~~~~----------------~~~g~ 87 (309)
--++-|+.....|||||..+|.....-..+...+.++ ...-.+. .-++.
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 3467889999999999999998664322222222211 1111111 11355
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
-+++||+||.-|+.. +.-..+ +-.|..|+|++. ++- .-..+.-+-+.+.+. ..-++|+||.|-
T Consensus 99 LiNLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDcv~Gv-CVQTETVLrQA~~ER------IkPvlv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDCVSGV-CVQTETVLRQAIAER------IKPVLVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchh---hhhhee------EeccCcEEEEEccCce-EechHHHHHHHHHhh------ccceEEeehhhH
Confidence 689999999976543 222222 345666777543 322 222333333344443 355778999985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0056 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999964
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0062 Score=42.75 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0058 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0051 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++++|++|+|||||++.|.|-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6788999999999999999965
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.031 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
.=||+++|+.|+|||||++.|.|...
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 35899999999999999999987653
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0054 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++|+++|..|+|||||++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998875
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0059 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.096 Score=49.47 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 22 QTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 22 ~~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.++...+... +..+-.++|.|++|+|||++++.++..
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455555554332 334567999999999999999999864
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.095 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-+|+|||+.|+|||||+..|+|.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 58999999999999999999996
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0061 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.028 Score=51.79 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred eEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHh
Q 021685 77 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNF 149 (309)
Q Consensus 77 ~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~ 149 (309)
.....+.+++..+.++|++|.... .......+ .++++++||+++.... . ...-.+.+..+...+
T Consensus 151 i~~~~f~~~~~~~~~~DvgGq~~~---R~kW~~~f------~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~ 221 (317)
T cd00066 151 IVETKFTIKNLKFRMFDVGGQRSE---RKKWIHCF------EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC 221 (317)
T ss_pred eeEEEEEecceEEEEECCCCCccc---chhHHHHh------CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH
Confidence 334456678889999999998432 22222222 5899999998875421 0 111123333333333
Q ss_pred Ccc--ccCcEEEEEecccCC
Q 021685 150 GEQ--IWKRALIVLTHAQLS 167 (309)
Q Consensus 150 g~~--~~~~~iiV~tk~D~~ 167 (309)
... ...|+++++||.|+.
T Consensus 222 ~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 222 NSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred hCccccCCCEEEEccChHHH
Confidence 321 236999999999974
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0097 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+|+|.|.+|+||||++|+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999965
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.006 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0057 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0061 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999964
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0062 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0052 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.|+|+|.+|+||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0059 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||+..|-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58899999999999999998765
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0063 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.006 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999974
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0066 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
|
... |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0062 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.04 Score=44.02 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-+++.+.-...-.|++.|..|+|||||+..+...
T Consensus 11 l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 11 FGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 33344333233457999999999999999999865
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0053 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
|+|+|++|+||||++++|++.-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998753
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0069 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.+|++.|-+|+|||||+|+|++.-
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 3899999999999999999999863
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0068 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0066 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0069 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0072 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.011 Score=54.50 Aligned_cols=25 Identities=48% Similarity=0.712 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+|+|.+|+|||||+|+|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0068 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.007 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0068 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999864
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.005 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
||+|+|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0072 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0058 Score=65.61 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.=||.|||+||+|||||+++|+.-
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHh
Confidence 458999999999999999999964
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.011 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++++|++|+|||||+|-+.|-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 35788999999999999999985
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0074 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0074 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...-|+|+|.+|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0079 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0076 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988854
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0076 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999964
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0077 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|.+|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0074 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999974
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 309 | ||||
| 3bb1_A | 274 | Crystal Structure Of Toc34 From Pisum Sativum In Co | 1e-103 | ||
| 1h65_A | 270 | Crystal Structure Of Pea Toc34-A Novel Gtpase Of Th | 2e-97 | ||
| 3bb3_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 1e-90 | ||
| 3bb4_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 3e-90 | ||
| 3def_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 7e-90 | ||
| 2j3e_A | 249 | Dimerization Is Important For The Gtpase Activity O | 2e-88 |
| >pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274 | Back alignment and structure |
|
| >pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon Length = 270 | Back alignment and structure |
|
| >pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262 | Back alignment and structure |
|
| >pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262 | Back alignment and structure |
|
| >pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262 | Back alignment and structure |
|
| >pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 8e-93
Identities = 183/266 (68%), Positives = 216/266 (81%), Gaps = 1/266 (0%)
Query: 1 MSMASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60
M+ Q +REW GI F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 61 GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120
GE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTI
Sbjct: 61 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120
Query: 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180
DVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240
RSEALL+ V KKD Q S +PVVL+ENSGRC KN++DEKVLPNG AWIP+LV+TI
Sbjct: 181 RSEALLQVVRSGA-SLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239
Query: 241 TEVVLNGSKALLVDKKLVEGPNPNEK 266
TEV LN S+++ VDK L++ +
Sbjct: 240 TEVALNKSESIFVDKNLIDKLAAADH 265
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 2e-89
Identities = 160/258 (62%), Positives = 204/258 (79%)
Query: 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVT 66
++REW+G QQFP ATQ KL+E GKLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+ V
Sbjct: 4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 67 VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYV 126
VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYV
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123
Query: 127 DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186
DRLDVY VD LDKQ+ AIT FG++IW + L+VLTHAQ S PD L YE F SKRS++LL
Sbjct: 124 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183
Query: 187 KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246
K + + M+K++ + S + VV ENSGRC+KN+ DEK LPNG AWIPNLVK IT+V N
Sbjct: 184 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 243
Query: 247 GSKALLVDKKLVEGPNPN 264
KA+ VD +E + +
Sbjct: 244 QRKAIHVDAAALEHHHHH 261
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 4e-30
Identities = 46/223 (20%), Positives = 83/223 (37%), Gaps = 21/223 (9%)
Query: 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPV 78
+ + ++ + L I+++GK G GKS+T NSI+G K T +S +
Sbjct: 10 GRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE 69
Query: 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDN 136
S S L +VDTPG+ + N + I R +L + LL V L R
Sbjct: 70 KRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG--RYTE 127
Query: 137 LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVS------ 190
+ + T I FGE+ +++ T + + + E + +
Sbjct: 128 EEHKATEKILKMFGERARSFMILIFTRK--DDLGDTNLHDYLREAPEDIQDLMDIFGDRY 185
Query: 191 ----PSTWMKKKDIQGS----FVPVVLVENSGRCAKNENDEKV 225
+++ Q + + V+ EN C N ++
Sbjct: 186 CALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRA 228
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-28
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 20/208 (9%)
Query: 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFT 88
K + + + L I+++GK G GKS+ NSI+ ++A Q+ S
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDNLDKQITRAIT 146
+ I+DTP + + ++R L VLL V +L R + D+Q + +
Sbjct: 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVK 130
Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP----------STWMK 196
+ FGE +++ TH + L + ++AL K V+
Sbjct: 131 EIFGEDAMGHTIVLFTHKEDLNGGSLM-DYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189
Query: 197 KKDIQGS----FVPVVLVENSGRCAKNE 220
+D Q + +L+E +G N
Sbjct: 190 NQDDQVKELMDCIEDLLMEKNGDHYTNG 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-15
Identities = 64/336 (19%), Positives = 99/336 (29%), Gaps = 82/336 (24%)
Query: 5 SQVIREWMGIQQFPPATQT---KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61
Q R + Q F + L+L L + +L+ G G GK+ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCL 172
Query: 62 EKAV-----------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110
V + S M+ + N + H+IQ
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 111 -IKRFLLNKT-IDVLLYVDRLDVYR---VDNLDKQ-----ITR--AITDNFGEQIWKRAL 158
++R L +K + LL + +V + + TR +TD
Sbjct: 233 ELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-- 288
Query: 159 IVLTHAQLSLPDRLDYEVF-----CSK---RSEALLKFVSP--------------STW-- 194
I L H ++L + C E L +P +TW
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDN 346
Query: 195 ------MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIP---------NLVKT 239
K I S + VL R K + V P IP +++K+
Sbjct: 347 WKHVNCDKLTTIIESSLN-VLEPAEYR--KMFDRLSVFPPSA-HIPTILLSLIWFDVIKS 402
Query: 240 ITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIF 275
VV+N L LVE P E I IP I+
Sbjct: 403 DVMVVVN----KLHKYSLVEK-QPKE-STISIPSIY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 34/172 (19%)
Query: 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRA 157
E G Y ++ F +VD D V ++ K I ++ D+
Sbjct: 10 ETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDH--------- 53
Query: 158 LIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS-----TWM----KKKDIQGSFVPVV 208
I+++ +S RL + SK+ E + KFV ++ K + Q S + +
Sbjct: 54 -IIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 209 LVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEG 260
+E R ND +V + + +L A V L++G
Sbjct: 112 YIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDG 157
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 4e-08
Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 19/198 (9%)
Query: 19 PATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGP 75
T + + + L ++ +N + V G+ G GKSS +N++ G ++ E
Sbjct: 52 QLTNSAISDALKEIDSSVLN---VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108
Query: 76 RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD 135
+ + D PG+ G N+ +++ + D + + +
Sbjct: 109 MERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYE-YDFFIIISATRFKKN- 163
Query: 136 NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195
D I +AI + K V T + + D E + E +L+ + +
Sbjct: 164 --DIDIAKAI-----SMMKKEFYFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVN 215
Query: 196 KKKDIQGSFVPVVLVENS 213
++ + P+ L+ N
Sbjct: 216 TFRENGIAEPPIFLLSNK 233
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---------VMVSRSRAGFTL 89
T++V+G+ G+GKS+ +NS+ + V++ L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141
IVDTPG N + Q + ++ +K D L V R D ++
Sbjct: 68 TIVDTPGF-GDAVDNSNCWQPVIDYIDSKFEDYLN--AESRVNRRQMPDNRV 116
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG----------PRPVMVSRSRAGFT 88
T++V+G+ G+GKS+ +NS+ V +
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141
L +VDTPG + I ++ + L D + R +D ++
Sbjct: 78 LTVVDTPGY-GDAINCRDCFKTIISYIDEQFERYLH--DESGLNRRHIIDNRV 127
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 13 GIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKG--GVGKSSTVNSIIGEKAVTVSTF 70
G+ Q PA++ L E +++ + V I + G VGKS+ +N + +
Sbjct: 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT--- 148
Query: 71 QSEGPRP---VMVSRSRAGFTLNIVDTPGLI 98
G RP + G L ++DTPG++
Sbjct: 149 ---GDRPGITTSQQWVKVGKELELLDTPGIL 176
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 6/149 (4%)
Query: 29 LGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88
L N + TI++ G VGKSS +N + V V ++ +
Sbjct: 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNK 77
Query: 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT--RAIT 146
I+DTPGL++ + N + I++ L V+L++ + + +QI +I
Sbjct: 78 YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK 137
Query: 147 DNFGEQIWKRALIVLTHAQLSLPDRLDYE 175
F K +I D L +
Sbjct: 138 SVFSN---KSIVIGFNKIDKCNMDSLSID 163
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 5e-04
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-----PRPVMVSRSRAGFTLNIVD 93
IL +G+ G+GKS+ ++++ K ++ + S L IV
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 94 TPGLIEGGYVNYHAIQLIKRFLLNK 118
T G + + + I F+ +
Sbjct: 102 TVGFGD-QINKEDSYKPIVEFIDAQ 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 100.0 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 100.0 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.9 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.86 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.85 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.83 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.8 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.79 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.79 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.78 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.77 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.76 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.76 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.76 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.76 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.76 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.76 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.75 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.75 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.75 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.75 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.74 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.74 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.74 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.74 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.74 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.74 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.73 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.73 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.73 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.73 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.73 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.73 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.73 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.73 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.73 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.73 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.73 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.72 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.72 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.72 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.72 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.72 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.72 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.72 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.72 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.71 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.71 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.71 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.71 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.71 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.71 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.71 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.71 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.71 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.71 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.71 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.71 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.71 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.71 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.7 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.7 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.7 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.7 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.7 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.7 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.69 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.69 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.69 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.69 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.69 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.69 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.69 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.69 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.69 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.69 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.69 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.69 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.69 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.69 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.69 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.68 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.68 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.68 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.68 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.68 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.68 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.68 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.68 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.68 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.68 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.68 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.67 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.67 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.67 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.67 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.67 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.67 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.67 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.67 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.66 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.66 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.66 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.66 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.66 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.66 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.66 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.65 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.65 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.65 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.64 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.64 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.64 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.64 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.63 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.63 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.63 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.63 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.63 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.62 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.62 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.62 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.62 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.62 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.62 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.61 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.61 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.61 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.61 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.61 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.6 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.6 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.6 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.6 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.59 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.59 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.57 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.57 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.56 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.55 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.55 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.54 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.29 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.53 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.52 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.51 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.51 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.5 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.5 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.49 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.49 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.49 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.48 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.48 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.47 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.47 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.47 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.46 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.45 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.45 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.44 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.44 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.43 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.43 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.42 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.4 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.36 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.35 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.34 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.32 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.31 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.3 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.3 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.3 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.3 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.29 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.28 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.27 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.26 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.25 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.21 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.21 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.21 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.2 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.18 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.17 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.17 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.12 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.07 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.05 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 99.04 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.04 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.02 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.02 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.0 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.98 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.94 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.92 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.84 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.78 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.76 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.74 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.69 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.68 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.38 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.38 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.35 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.29 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.21 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.04 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.93 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.91 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.88 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.82 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.81 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.66 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.64 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.63 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 97.63 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 97.61 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.6 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.43 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.38 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.37 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.36 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.19 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.18 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 97.18 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.0 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.95 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.94 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 96.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.82 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.69 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.68 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.54 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.47 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.45 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.44 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.43 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.42 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.42 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.4 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.4 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.39 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.38 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.32 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.29 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.27 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.24 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.23 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.22 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.22 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.21 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.21 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.21 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.2 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.18 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.17 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.15 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.15 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.1 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.1 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.1 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.07 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.05 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.04 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.02 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.01 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.01 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.96 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 95.94 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.92 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.9 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.88 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.86 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 95.85 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.85 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.85 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.84 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.83 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 95.82 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.81 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 95.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.8 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 95.78 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 95.77 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.77 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 95.76 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.75 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.75 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.72 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 95.69 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.68 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.68 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.66 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 95.65 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 95.65 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.64 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.63 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.63 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.62 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 95.61 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.6 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.6 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.58 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.58 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.55 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.52 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.51 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.5 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.5 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.49 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.48 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 95.48 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.47 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 95.46 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.45 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.44 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.44 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.42 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.41 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.39 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.38 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.35 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.35 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 95.33 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.3 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.3 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.29 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.27 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 95.25 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.25 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.24 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 95.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.19 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.19 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.16 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.15 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 95.14 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.14 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.1 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.09 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 95.08 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.08 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.07 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.06 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.05 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.04 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.02 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.01 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 94.99 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.99 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.99 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 94.99 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.97 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 94.95 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.91 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.87 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 94.86 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.85 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.82 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.81 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.78 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.75 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.75 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.72 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.71 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 94.69 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.68 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.67 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.65 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 94.65 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.64 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.64 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.63 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.61 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 94.57 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.53 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.52 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.5 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 94.49 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.49 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.46 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.46 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 94.45 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.43 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.41 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.4 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.39 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.37 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.36 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.31 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.3 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.3 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 94.29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 94.28 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.28 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.25 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.21 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.21 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.21 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.19 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.19 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.17 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 94.15 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 94.13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 94.12 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.12 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.12 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 94.11 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.1 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 94.1 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.08 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.08 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.03 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.03 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.02 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.01 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.0 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.0 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.99 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.98 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 93.94 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 93.94 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 93.91 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.9 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.87 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.85 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 93.8 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 93.76 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 93.74 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.74 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.72 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.69 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 93.67 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 93.65 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 93.63 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 93.61 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.6 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 93.51 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 93.51 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 93.49 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 93.31 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 93.18 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.17 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.06 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.04 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 92.99 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 92.93 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 92.93 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 92.93 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 92.8 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.77 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 92.74 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 92.66 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 92.57 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 92.5 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 92.49 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 92.48 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.46 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 92.45 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 92.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 92.43 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 92.41 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 92.37 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 92.33 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 92.29 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 92.25 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 92.24 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.21 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 92.15 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 92.1 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.1 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.05 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.03 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.02 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 91.95 |
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=278.76 Aligned_cols=261 Identities=70% Similarity=1.094 Sum_probs=224.7
Q ss_pred ccch--hhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE
Q 021685 3 MASQ--VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80 (309)
Q Consensus 3 ~~~~--~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~ 80 (309)
|||| ++++|.|+.++|.++++.+.+++.++...+..+++|+++|.+|+|||||+|+|++.....+++.+++|......
T Consensus 1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 7887 78999999999999999999999999988888899999999999999999999999876777888888888877
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEE
Q 021685 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 81 ~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
.....+..+.||||||+.+.....+.+.+.+.+++...++|+||||+++|..+++..+..+++.+.+.++...+.|+++|
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 88888999999999999887777777777777777667899999999998767888888999999999998888899999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHH
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i 240 (309)
+||+|+.++++.+++++.++..+.+++.++....+.+. ++...+|+.++++.+.|.++...+++++....|.+.|++.+
T Consensus 161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l 239 (270)
T 1h65_A 161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239 (270)
T ss_dssp EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHH
T ss_pred EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHH
Confidence 99999987777899999988888888888765444322 22345899999999999999988999999999999999999
Q ss_pred HHHHhcCCCcceeccccccCCCCC
Q 021685 241 TEVVLNGSKALLVDKKLVEGPNPN 264 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~p~ 264 (309)
...+.++++.++.++++++++.|.
T Consensus 240 ~~~~~~~~~~l~~d~~~~~~~~~~ 263 (270)
T 1h65_A 240 TEVALNKSESIFVDKNLIDKLAAA 263 (270)
T ss_dssp HHHHTSSSCCEECCHHHHHHHHHC
T ss_pred HHHHhcCCCceecCHHHhcCCCcc
Confidence 999999999999999988876554
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=277.36 Aligned_cols=257 Identities=63% Similarity=1.023 Sum_probs=218.1
Q ss_pred ccchhhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe
Q 021685 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR 82 (309)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~ 82 (309)
|++ +.++|.|++++|+++++.+.++++++...+.++++|+++|.+|+|||||+|+|++...+.+++.+++|........
T Consensus 1 ~~~-~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~ 79 (262)
T 3def_A 1 MGS-LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79 (262)
T ss_dssp ------CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE
T ss_pred CCc-chhhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE
Confidence 667 7899999999999999999999999999888899999999999999999999999987777888888888888888
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
..++..+.||||||+.+.....+.+.+.+.+++...++|+++||+++|..+++..+..+++.+.+.++...++|+++|+|
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 89999999999999998888888888888888877899999999999877788888899999999999888889999999
Q ss_pred cccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHH
Q 021685 163 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242 (309)
Q Consensus 163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~ 242 (309)
|+|+.++++.+++++++...+.+++.++++.+..........+|++++++.+.|..|..+++++|+..+|++.|++.|..
T Consensus 160 K~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~ 239 (262)
T 3def_A 160 HAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239 (262)
T ss_dssp CTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHH
T ss_pred CcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHH
Confidence 99998778889999998877888888877655443222233489999999999999999999999999999999999999
Q ss_pred HHhcCCCcceeccccccC
Q 021685 243 VVLNGSKALLVDKKLVEG 260 (309)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~ 260 (309)
++.+..+++.++++..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~ 257 (262)
T 3def_A 240 VATNQRKAIHVDAAALEH 257 (262)
T ss_dssp HHTSCSCCEEC-------
T ss_pred HHhCCCCceeccHHHhhh
Confidence 999999999999876544
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=192.55 Aligned_cols=236 Identities=18% Similarity=0.244 Sum_probs=141.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcH---
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY--- 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~--- 105 (309)
..++|+|+|.+|+|||||+|+|++.+.+.... .++.+..........+|. ++.||||||+++.....+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46999999999999999999999988755443 233344444555555664 899999999976533221
Q ss_pred HHH--------HHHHH-------hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 106 HAI--------QLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 106 ~~~--------~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
... ..+.. .+.+.++|+++|++....+.+...+..+++.+.. ..|+++|+||+|+..+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCHH
Confidence 111 11111 1224568999999765555678888888887765 27999999999986321
Q ss_pred CCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021685 171 RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
+ .+.+ .+.+++.+... +++++.+++. ++.+.+. -...|.+.+++++.++...
T Consensus 161 e--~~~~----~~~i~~~l~~~-----------~i~v~~~sa~----~~~~~~~-------l~~~l~~~~p~~vv~s~~~ 212 (274)
T 3t5d_A 161 E--CQQF----KKQIMKEIQEH-----------KIKIYEFPET----DDEEENK-------LVKKIKDRLPLAVVGSNTI 212 (274)
T ss_dssp H--HHHH----HHHHHHHHHHT-----------TCCCCCC----------------------CHHHHHTCSEECCCCCCC
T ss_pred H--HHHH----HHHHHHHHHHc-----------CCeEEcCCCC----CChhHHH-------HHHHHhcCCCcEEEEeeeE
Confidence 1 1111 23344444322 2455444331 2222111 1345556667777777777
Q ss_pred ceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021685 251 LLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 251 ~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
+...+..+++|. |+||...++...++.|..+...+.+..-.|++..-...+ .||.++
T Consensus 213 ~~~~~~~~~~r~-y~wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~ 271 (274)
T 3t5d_A 213 IEVNGKRVRGRQ-YPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRK 271 (274)
T ss_dssp --------CEEE-CSSCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHH
T ss_pred EeeCCeEEEeee-cccceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788889998 999999999999999999777788787778877654332 356554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=171.02 Aligned_cols=186 Identities=25% Similarity=0.255 Sum_probs=122.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC--CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~--~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|+|..... +..+ ++|..+......+++..+.||||||+.+......+..+.+.++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 357999999999999999999999987633 3333 5677788888888999999999999988766665555555554
Q ss_pred h--hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
+ ..+++|++|+|++++ +++..+..++..+.+.++...++|+++|+||+|+.+.. ..++++....+.++++++.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHhchHHHHHHHHHc
Confidence 4 346899999997765 57778889999999888876668999999999986433 46667665556777777765
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.. .+++.++.... .. ....+.+|++.+...+...+
T Consensus 182 ~~-----------~~~~~~~~~~~--~~--------~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 GD-----------RYCALNNKATG--AE--------QEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp SS-----------SEEECCTTCCH--HH--------HHHHHHHHHHHHHHHHHHCT
T ss_pred CC-----------EEEEEECCCCc--cc--------cHHHHHHHHHHHHHHHHHcC
Confidence 32 33333332100 00 01137888888888776543
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=190.33 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=135.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+.....+.++|..+.||||||+.+.....+ +.+..++...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 46999999999999999999999998767888889998887777888999999999999976443211 1222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++++. ..+..+..++..+.+. + +++++|+||+|+.+.+..+.+++. +.+.+.+...
T Consensus 254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~~~~~~~~~~----~~~~~~l~~~--- 320 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFE----ENIRDHFQFL--- 320 (436)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCTTHHHHHH----HHHHHHCGGG---
T ss_pred HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCcchHHHHHHH----HHHHHhcccC---
Confidence 2247899999988754 4667777777766542 2 799999999999765544344332 2333333211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
..+|++.+|+. ++.+ +.+|++.+.....+..+.+ +++.+...+++|...|+
T Consensus 321 -------~~~~~~~~SA~----tg~~-----------v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~ 378 (436)
T 2hjg_A 321 -------DYAPILFMSAL----TKKR-----------IHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGS 378 (436)
T ss_dssp -------TTSCEEECCTT----TCTT-----------GGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTE
T ss_pred -------CCCCEEEEecc----cCCC-----------HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCc
Confidence 23788888874 4443 4555555554444322211 45567777899999999
Q ss_pred ccccHHHHHHHHH
Q 021685 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
++ +++|++|+..
T Consensus 379 ~~-~i~y~~q~~~ 390 (436)
T 2hjg_A 379 RL-KIYYATQVSV 390 (436)
T ss_dssp EC-CEEEEEEEET
T ss_pred ce-eEEeEecCCC
Confidence 96 9999999754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=187.28 Aligned_cols=207 Identities=22% Similarity=0.291 Sum_probs=140.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+.....+..++..+.||||||+.+.....+ +.+..++...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 46999999999999999999999998778888889888887777788999999999999876432211 1222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++|+|++... .++..+..++..+.+. + +|+++|+||+|+.+.+..+.+++. +.+++.+...
T Consensus 274 ~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~--- 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFE----ENIRDHFQFL--- 340 (456)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHH----HHHHHHCGGG---
T ss_pred HHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHH----HHHHHhcccC---
Confidence 2257899999977654 5778888888877663 2 799999999999766555444443 2333333211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
..+|++.+|+. ++.+ +.+|++.+.....+..+.. ++.++...+++|...|+
T Consensus 341 -------~~~~~~~~SA~----~g~g-----------v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~ 398 (456)
T 4dcu_A 341 -------DYAPILFMSAL----TKKR-----------IHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGS 398 (456)
T ss_dssp -------TTSCEEECCTT----TCTT-----------GGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTE
T ss_pred -------CCCCEEEEcCC----CCcC-----------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCc
Confidence 23789888874 4443 5566666555554333222 44456677889899999
Q ss_pred ccccHHHHHHHH
Q 021685 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
++ +++|++|..
T Consensus 399 ~~-ki~y~~q~~ 409 (456)
T 4dcu_A 399 RL-KIYYATQVS 409 (456)
T ss_dssp EC-CEEEEEEEE
T ss_pred ee-eEEEEecCC
Confidence 96 999999964
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-21 Score=177.37 Aligned_cols=257 Identities=15% Similarity=0.195 Sum_probs=132.3
Q ss_pred hhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC------CCCCe--eEE
Q 021685 8 IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVM 79 (309)
Q Consensus 8 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~~--~~~ 79 (309)
.+.++|+.++|....... ...+ ..++|+|+|.+|+|||||+|+|++...+..+..+ ..|.. ...
T Consensus 14 ~~~~v~~~~l~~~~~~k~-------~~~~-~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 85 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKS-------VKKG-FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAST 85 (361)
T ss_dssp -------CCHHHHHHTHH-------HHHC-CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEE
T ss_pred CCceEEeccchHHhCCee-------ecCC-CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEE
Confidence 467999999998865532 1122 4699999999999999999999987654333211 11221 122
Q ss_pred EEeeeCCe--EEEEEeCCCCCCCCC-------CcHHHH----HHHHH-------hhhcCCCcEEEEEEeCCccccChhHH
Q 021685 80 VSRSRAGF--TLNIVDTPGLIEGGY-------VNYHAI----QLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 80 ~~~~~~g~--~l~liDTPG~~~~~~-------~~~~~~----~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
......+. .+.||||||+++... ...... ..++. .+.+.++|+++|++.....++.+.+.
T Consensus 86 ~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~ 165 (361)
T 2qag_A 86 VEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV 165 (361)
T ss_dssp EC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH
T ss_pred EEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH
Confidence 22333454 689999999965422 111111 11211 11234678899996543456778887
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021685 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
.+++.+. . ..|+|+|+||+|+..+. +. ....+.+.+.+... ++|++.+++. ++
T Consensus 166 ~~~~~l~----~--~~piIlV~NK~Dl~~~~-----ev-~~~k~~i~~~~~~~-----------~i~~~~~Sa~----~~ 218 (361)
T 2qag_A 166 AFMKAIH----N--KVNIVPVIAKADTLTLK-----ER-ERLKKRILDEIEEH-----------NIKIYHLPDA----ES 218 (361)
T ss_dssp HHHHHTC----S---SCEEEEEECCSSSCHH-----HH-HHHHHHHHHHTTCC------------CCSCCCC--------
T ss_pred HHHHHhc----c--CCCEEEEEECCCCCCHH-----HH-HHHHHHHHHHHHHC-----------CCCEEeCCCc----CC
Confidence 7776653 2 26999999999986321 11 11112333333321 2566655543 22
Q ss_pred cCCcccCCCCCCchHHHHHHH----HHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhh
Q 021685 220 ENDEKVLPNGTAWIPNLVKTI----TEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAA 295 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i----~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~ 295 (309)
.+ +. -+..|.+.+ ++++.++...+...+..+++|. |+||...+...-+|.|..+...+. ..-.|++
T Consensus 219 ~~-~e-------~~~~l~~~i~~~ip~~vv~s~~~~~~~g~~~~gr~-ypwg~~~ven~~h~df~~Lr~~l~-~~~~dl~ 288 (361)
T 2qag_A 219 DE-DE-------DFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRL-YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQ 288 (361)
T ss_dssp -------------CHHHHHHHHHTCSCEECCCSEEC------CEEEC-CSSCCEESSCC-CCTHHHHHHHHH-HCCGGGT
T ss_pred Cc-ch-------hHHHHHHHHHhcCCCCEeCCCCccccCCeEEEEEe-cCCceEecCCCccCcHHHHHHHHH-HHHHHHH
Confidence 21 11 134444444 4444455444555677788888 999999999999999999666677 7777887
Q ss_pred hcccchh--hhhhccC
Q 021685 296 KEAKPVW--ARASRRL 309 (309)
Q Consensus 296 ~~~~~~~--~~~~~~~ 309 (309)
+.-...| .||.++|
T Consensus 289 ~~t~~~~ye~yr~~~l 304 (361)
T 2qag_A 289 EVTQDLHYENFRSERL 304 (361)
T ss_dssp HHHHTTTHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7765444 4666554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=168.33 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=125.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---------HHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---------YHAI 108 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---------~~~~ 108 (309)
..++|+++|++|+|||||+|+|+|.....+++.+++|.++......++|..+.+|||||+....... ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999999877788999999888888888899999999999985432211 1112
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHh
Q 021685 109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 188 (309)
Q Consensus 109 ~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 188 (309)
..+ ..+|++++|++... ..+..+..+...+.+. + +++++|+||+|+.+.+..+.+++. +.+.+.
T Consensus 259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~----~~~~~~ 322 (439)
T 1mky_A 259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-G----RASVVVFNKWDLVVHREKRYDEFT----KLFREK 322 (439)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTTGGGCHHHHH----HHHHHH
T ss_pred HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccCCCchhhHHHHHH----HHHHHH
Confidence 222 46899999977653 3556666665555432 3 799999999999754433343332 222222
Q ss_pred hcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCC
Q 021685 189 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGP 261 (309)
Q Consensus 189 i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~ 261 (309)
+... ...|++.+|+. ++.+ +.+|++.+.....+....+ ++.++...++
T Consensus 323 ~~~~----------~~~~~~~~SA~----~g~g-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~ 377 (439)
T 1mky_A 323 LYFI----------DYSPLIFTSAD----KGWN-----------IDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTN 377 (439)
T ss_dssp CGGG----------TTSCEEECBTT----TTBS-----------HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCC
T ss_pred hccC----------CCCcEEEEECC----CCCC-----------HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCC
Confidence 2211 13688888774 4443 6778777766654433222 4445666677
Q ss_pred CCCCCCcccccHHHHHHHHH
Q 021685 262 NPNEKGKILIPFIFAFQYFF 281 (309)
Q Consensus 262 ~p~~~g~~~~~l~~~~q~~~ 281 (309)
+| ++. +++|++|..-
T Consensus 378 ~~----~~~-ki~y~~q~~~ 392 (439)
T 1mky_A 378 LP----RGL-KIFFGVQVDI 392 (439)
T ss_dssp CS----TTC-CEEEEEEEET
T ss_pred CC----CCc-EEEEEEecCC
Confidence 76 453 7778888754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-18 Score=146.42 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=116.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNY---HAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~---~~~~~i~ 112 (309)
..++|+|+|.+|+|||||+|+|++.. ...++..+++|......... .++..+.||||||+.+...... .+...+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 45677777788776666655 5678999999999976543322 2233344
Q ss_pred Hhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcc
Q 021685 113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 113 ~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
.++. ...+|++++|++... .++..+..+++.+.+. ..|+++|+||+|+.+... .++.. +.+.+.+..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~~~--~~~~~----~~~~~~l~~ 175 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTRQE--SINAL----RATQKSLDA 175 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCHHH--HHHHH----HHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccCChhh--HHHHH----HHHHHHHHh
Confidence 4442 356899999977653 4677777777777652 279999999999863211 11122 222233322
Q ss_pred cccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 192 STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 192 ~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
..... .....|++.+++. ++.+ +.+|++.+...+...
T Consensus 176 ~~~~~----~~~~~~~~~~SA~----~g~g-----------v~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 176 YRDAG----YAGKLTVQLFSAL----KRTG-----------LDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHT----CCSCEEEEEEBTT----TTBS-----------HHHHHHHHHHHHC--
T ss_pred hhhcc----cCCCCeEEEeecC----CCcC-----------HHHHHHHHHHhcCcc
Confidence 10000 0123688888764 3332 788888888877654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=150.70 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=111.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...++|+|+|.+|+|||||+|+|++...+..+..+. +|..+......+++..+.||||||+.+.....+.+.+.+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 356999999999999999999999988666555444 6777777777889999999999999876655555444443322
Q ss_pred --hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe-cccCCCCCCCCHHHHHHhh-hHHHHHhhcc
Q 021685 116 --LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSP 191 (309)
Q Consensus 116 --~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~ 191 (309)
..+++|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+... +..+++... .+.+++.+..
T Consensus 100 ~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHHHH
T ss_pred HhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHHHH
Confidence 237899999997776 477888888899999888766678888888 9998622 455554422 1334455544
Q ss_pred c
Q 021685 192 S 192 (309)
Q Consensus 192 ~ 192 (309)
+
T Consensus 175 ~ 175 (260)
T 2xtp_A 175 C 175 (260)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-18 Score=153.25 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=93.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCC---CcHHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGY---VNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~---~~~~~~~~i~~ 113 (309)
.+-.|+++|.+|+|||||+|+|+|.....+++.+++|..........+ +..+.||||||+.+... ..+........
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 467899999999999999999999998778888899988887777787 89999999999987541 11222222233
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHH-HHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~-l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++ ..+|++++|++++. ..+..+..+ ++.+... ..|+++|+||+|+.
T Consensus 89 ~l--~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 89 SL--EEADVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp HH--HHCSEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred Hh--hcCCEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 33 58999999977753 355566555 5555442 27999999999986
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=151.08 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=93.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
...+|+++|.+|+|||||+|+|+|...+.+++.+++|..........++..+.||||||+.+....-.+. ......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l- 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL- 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence 3468999999999999999999999887778888888877766666788899999999997654322222 22222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .++..+..+++.+.+.++ ..|+++|+||+|+.+
T Consensus 85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAAK 131 (301)
T ss_dssp -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccCC
Confidence 68999999988754 466677666666655421 279999999999863
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-17 Score=140.60 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=86.7
Q ss_pred hhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHH
Q 021685 32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQ 109 (309)
Q Consensus 32 ~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~ 109 (309)
+.......++|+|+|.+|+|||||+|+|++... .+.+.+.+|...........+..+.||||||+.+....... ...
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 333344679999999999999999999999875 35556666776666666778889999999999754321111 012
Q ss_pred HHHHhhhcCCCcEEEEEEeCCcc-ccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 110 LIKRFLLNKTIDVLLYVDRLDVY-RVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~-~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.+..+. ..+|++++|++++.. ++. ..+..++..+...+. ..|+++|+||+|+.+.....
T Consensus 101 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~ 161 (228)
T 2qu8_A 101 TITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDSLS 161 (228)
T ss_dssp HHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCC
T ss_pred HHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchhhH
Confidence 222222 578999999887542 233 223445555544321 27999999999997554433
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=134.60 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=82.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.+|+++|.+|+|||||+|++++......+..++++..........++..+.+|||||..+..............++ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence 5899999999999999999999875455666777777777777888899999999999764433333333333333 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++... .++..+..+.+.+.+. + .|+++|+||+|+.
T Consensus 80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRA-ELTQADYEVAEYLRRK-G----KPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSS-CCCHHHHHHHHHHHHH-T----CCEEEEEECCCSG
T ss_pred CCEEEEEEECCC-cccHhHHHHHHHHHhc-C----CCEEEEEECcccc
Confidence 999999987754 3556666666666552 2 7999999999985
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=143.20 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+|+|.+|+|||||+|+|++...... ..+..+.......... ++ ..+.||||||..+.......+ +
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~--- 82 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN-YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY---Y--- 82 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH---H---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH---h---
Confidence 569999999999999999999998763211 1111111122222222 22 579999999986554444322 1
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccc
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW 194 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 194 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.+......+ ...++...
T Consensus 83 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~--------~~~~~~~~--- 146 (218)
T 4djt_A 83 ---IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK--------LVMEVLKG--- 146 (218)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH--------HHHHHTTT---
T ss_pred ---hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH--------HHHHHHHH---
Confidence 58999999988764321122345667776665543 699999999998643332222 12222221
Q ss_pred ccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCccee-------ccccccCCCCCCCC
Q 021685 195 MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV-------DKKLVEGPNPNEKG 267 (309)
Q Consensus 195 ~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~-------~~~~~~~~~p~~~g 267 (309)
.+++++.+++. ++.+ +.++++.+...+....+.... .......++|...+
T Consensus 147 --------~~~~~~~~Sa~----~g~g-----------v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (218)
T 4djt_A 147 --------KNYEYFEISAK----TAHN-----------FGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESK 203 (218)
T ss_dssp --------CCCEEEEEBTT----TTBT-----------TTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC----
T ss_pred --------cCCcEEEEecC----CCCC-----------HHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhhh
Confidence 12577777763 3433 678888887777765544322 22334444445443
Q ss_pred cccccHHHHHHHHH
Q 021685 268 KILIPFIFAFQYFF 281 (309)
Q Consensus 268 ~~~~~l~~~~q~~~ 281 (309)
.++|++|..-
T Consensus 204 ----~~~y~~q~~~ 213 (218)
T 4djt_A 204 ----YIDYMEQASK 213 (218)
T ss_dssp --------------
T ss_pred ----hHHHHHHHhc
Confidence 4679999654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=136.34 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~ 113 (309)
..++|+|+|.+|+|||||+|+|++.. ....++.+++|........ +..+.+|||||+.+...... .+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 56999999999999999999999986 3344555566655444332 33799999999876544322 22222333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
++. ...+|++++|++++. ..+..+..+++.+... ..|+++|+||+|+.++.+ .+.. .+.+++.+...
T Consensus 99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~--~~~~----~~~~~~~~~~~ 166 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKGK--WDKH----AKVVRQTLNID 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGG--HHHH----HHHHHHHHTCC
T ss_pred HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccCChHH--HHHH----HHHHHHHHccc
Confidence 332 246699999987653 4566666666666542 269999999999964332 2221 13333333221
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
...+++.+++. ++.+ +.+|++.+...+
T Consensus 167 ----------~~~~~~~~Sa~----~~~g-----------v~~l~~~l~~~l 193 (195)
T 1svi_A 167 ----------PEDELILFSSE----TKKG-----------KDEAWGAIKKMI 193 (195)
T ss_dssp ----------TTSEEEECCTT----TCTT-----------HHHHHHHHHHHH
T ss_pred ----------CCCceEEEEcc----CCCC-----------HHHHHHHHHHHh
Confidence 12577777663 3332 778888776654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=136.29 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+..........++ ..+.||||||..+...... .++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS-------SYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHH-------HHH
Confidence 469999999999999999999998764 333344445555555566666 4789999999754333221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.++. ..+.+.+
T Consensus 87 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~------ 151 (196)
T 3tkl_A 87 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTTA-----KEFADSL------ 151 (196)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHHH-----HHHHHHT------
T ss_pred --hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHHHH-----HHHHHHc------
Confidence 68999999988764221122345666666654433 69999999999976655444332 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 152 --------~~~~~~~Sa~----~g~g-----------v~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 152 --------GIPFLETSAK----NATN-----------VEQSFMTMAAEIKKR 180 (196)
T ss_dssp --------TCCEEEECTT----TCTT-----------HHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEeCC----CCCC-----------HHHHHHHHHHHHHHH
Confidence 2577777663 3333 677777776666543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=135.66 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.... ....++.+..........++ ..+.+|||||..+....... ++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST-------YY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH-------Hh
Confidence 4699999999999999999999988642 33344455555555666677 57899999997544333222 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+... ..|+++|+||+|+.+......
T Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~ 133 (181)
T 3tw8_B 80 --RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVET 133 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCH
Confidence 688999999887642211222345666655433 268999999999865444333
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-19 Score=168.66 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=124.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc--C-CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCC---------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS--T-FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYV--------- 103 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~-~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~--------- 103 (309)
..++++|+|++|+|||||+|.|+|....... . .++.+.....+.....+. .++++|+||++.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999998532111 1 122222222222233332 6899999999763211
Q ss_pred --cHHHHHHHHHhh---------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 104 --NYHAIQLIKRFL---------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 104 --~~~~~~~i~~~~---------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..++...+..+. .+.++|+|+|++....+.++..|.++++.|.. ..++|+|+||+|...+.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt~~-- 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAISKS-- 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGSCHH--
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhccchH--
Confidence 011111222221 12245777766443344688889888887752 16999999999987432
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcce
Q 021685 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALL 252 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~ 252 (309)
+. ..+++.|+... ...++++++++... + +...-...|...+++++.++...+.
T Consensus 193 ---E~-----~~l~~~I~~~L-------~~~gi~I~~is~~d--------~----~~~~~~~~~~~~~PFavvgs~~~~~ 245 (427)
T 2qag_B 193 ---EL-----TKFKIKITSEL-------VSNGVQIYQFPTDD--------E----SVAEINGTMNAHLPFAVIGSTEELK 245 (427)
T ss_dssp ---HH-----HHHHHHHHHHH-------BTTBCCCCCCC-----------------CCSHHHHHTTC-CCBCCC------
T ss_pred ---HH-----HHHHHHHHHHH-------HHcCCcEEecCCCc--------h----hHHHHHhhhcCCCCeEEECCCCeee
Confidence 21 23333343211 11246777665321 0 0011124455678899999888888
Q ss_pred eccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021685 253 VDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 253 ~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
+++..+++|. |+||...|...-+|.|..+...+.+..-.|+++.-...| .||.++
T Consensus 246 ~~g~~vrgR~-ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~ 302 (427)
T 2qag_B 246 IGNKMMRARQ-YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCK 302 (427)
T ss_dssp --CCCC------CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHH
T ss_pred eCCcEEEEec-CCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999 999999999999999999677788888888887654333 355543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=150.62 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=90.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-----cHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-----NYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-----~~~~~~~i~ 112 (309)
..++|+++|.+|+|||||+|+|+|.. ..+++.+++|.......+...+..+.+|||||+.+.... .++ ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e--~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDE--QIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHH--HHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHH--HHHH
Confidence 45899999999999999999999987 478888999998888888888899999999999875521 111 1233
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++....+|++++|++... . +....+...+.+. + .|+++|+||+|+.
T Consensus 79 ~~~~~~~~d~ii~VvD~~~--~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN--L-ERNLYLTLQLLEL-G----IPCIVALNMLDIA 125 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG--H-HHHHHHHHHHHHH-T----CCEEEEEECHHHH
T ss_pred HHHhhcCCCEEEEEecCCC--h-HHHHHHHHHHHhc-C----CCEEEEEECccch
Confidence 4455579999999966542 2 3344455555544 2 7999999999985
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=133.72 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=101.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.........+..+..........++. .+.+|||||..+... ....++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~ 81 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAYY 81 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHc
Confidence 46999999999999999999999877533333444444444444455664 789999999743221 112222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.++.....++.. ++....
T Consensus 82 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~--------~~~~~~--- 146 (180)
T 2g6b_A 82 --RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKREDGE--------KLAKEY--- 146 (180)
T ss_dssp --GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCHHHHH--------HHHHHH---
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcccccCHHHHH--------HHHHHc---
Confidence 5789999998876422112224566666665432 2699999999999765544443321 111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 147 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 147 --------GLPFMETSAK----TGLN-----------VDLAFTAIAKELKRR 175 (180)
T ss_dssp --------TCCEEECCTT----TCTT-----------HHHHHHHHHHHHHC-
T ss_pred --------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHHH
Confidence 1567766653 3332 788888887776543
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=131.88 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|+|++......++.+++|....... .+.++.+|||||+........ .+......+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 45899999999999999999999988656666666666544332 244689999999865432221 222222333
Q ss_pred h-hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021685 115 L-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 115 ~-~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
+ ....+|++++|++.+. ..+..+..+++.+... + .|+++|+||+|+.++.+ .+... +.+++.....
T Consensus 99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~~~--~~~~~----~~~~~~~~~~- 165 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKMSE--RAKKL----EEHRKVFSKY- 165 (195)
T ss_dssp HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCGGG--HHHHH----HHHHHHHHSS-
T ss_pred HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCChHH--HHHHH----HHHHHHHhhc-
Confidence 3 2357799999977643 4556666666666654 2 79999999999864321 22221 3333433321
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..++++.+++. ++.+ +.+|++.+...+.
T Consensus 166 ---------~~~~~~~~Sa~----~~~g-----------v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 166 ---------GEYTIIPTSSV----TGEG-----------ISELLDLISTLLK 193 (195)
T ss_dssp ---------CCSCEEECCTT----TCTT-----------HHHHHHHHHHHHC
T ss_pred ---------CCCceEEEecC----CCCC-----------HHHHHHHHHHHhh
Confidence 12577777663 3332 7888888877664
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=130.02 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++... .....+..+.+........++ ..+.+|||||..+.......+ +
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y---- 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHH---h----
Confidence 469999999999999999999998753 222233333444444555555 478999999975544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+..... ..|+++|+||+|+.++...+.+
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1z2a_A 76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNE 130 (168)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCHH
Confidence 589999999887642211222345666655442 2799999999998654443333
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=147.23 Aligned_cols=160 Identities=15% Similarity=0.197 Sum_probs=107.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~~~~ 116 (309)
.+|+++|.+|+|||||+|+|+|.. ..+++.+++|.+.....+.+++..+.||||||+.+..... .......+.++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999986 4678889999988888888899999999999997654321 111122344555
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..++|++++|++.+. . .....+...+.+. ..|+++|+||+|+.+..+...+ .+.+.+.+.
T Consensus 81 ~~~~d~vi~VvDas~--~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~~~~~~~~------~~~l~~~lg------ 140 (256)
T 3iby_A 81 DLEYDCIINVIDACH--L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAEHRGISID------TEKLESLLG------ 140 (256)
T ss_dssp HSCCSEEEEEEEGGG--H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHHHTTCEEC------HHHHHHHHC------
T ss_pred hCCCCEEEEEeeCCC--c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCCcCCcHHH------HHHHHHHcC------
Confidence 578999999966543 1 2233333333322 3799999999998533322111 122333332
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHH
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~ 243 (309)
+|++.+++. ++.+ +.+|++.+...
T Consensus 141 --------~~vi~~SA~----~g~g-----------i~el~~~i~~~ 164 (256)
T 3iby_A 141 --------CSVIPIQAH----KNIG-----------IPALQQSLLHC 164 (256)
T ss_dssp --------SCEEECBGG----GTBS-----------HHHHHHHHHTC
T ss_pred --------CCEEEEECC----CCCC-----------HHHHHHHHHhh
Confidence 688887764 3333 77888877766
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=130.29 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||..+.......+ +
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~---- 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y---- 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHH---h----
Confidence 358999999999999999999998764 223333444444444555555 478999999985544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 121 (170)
T ss_dssp --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence 58999999988764221122345666666654332 6999999999983
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-17 Score=142.74 Aligned_cols=163 Identities=20% Similarity=0.304 Sum_probs=110.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|+|... .++..+++|...........+..+.||||||+.+......+ ....+.++..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhh
Confidence 458999999999999999999999874 57778888888888778888899999999999765443321 1122344444
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
..+|++++|++.+. + .....+...+.+. ..|+++|+||+|+....+...+ .+.+.+.+
T Consensus 82 ~~~d~ii~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~~~~~i~~~------~~~l~~~l-------- 139 (258)
T 3a1s_A 82 GDADLVILVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEAKKTGMKID------RYELQKHL-------- 139 (258)
T ss_dssp SCCSEEEEEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHHHHTTCCBC------HHHHHHHH--------
T ss_pred cCCCEEEEEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCCCccchHHH------HHHHHHHc--------
Confidence 68999999976653 2 2223344444332 2799999999998533322211 12222222
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
++|++.+++. ++.+ +.+|++.+.....
T Consensus 140 ------g~~vi~~SA~----~g~g-----------i~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 ------GIPVVFTSSV----TGEG-----------LEELKEKIVEYAQ 166 (258)
T ss_dssp ------CSCEEECCTT----TCTT-----------HHHHHHHHHHHHH
T ss_pred ------CCCEEEEEee----CCcC-----------HHHHHHHHHHHhh
Confidence 2688887763 3333 7888888877664
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=131.71 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g---~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
...++|+++|.+|+|||||+|+|++.... ....+..+.+.......+.+ ..+.+|||||.......... .+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~-- 77 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK---YI-- 77 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHH---HH--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhH---HH--
Confidence 35699999999999999999999987532 12223333445555566665 68999999998654333221 12
Q ss_pred hhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcc
Q 021685 114 FLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
..+|++++|++++.. ++ ..-..++..+..........| +++|+||+|+.+....+.++. .++...
T Consensus 78 ----~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~--------~~~~~~ 144 (178)
T 2hxs_A 78 ----YGAQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH--------LRFCQE 144 (178)
T ss_dssp ----TTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH--------HHHHHH
T ss_pred ----hhCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH--------HHHHHH
Confidence 589999999887542 22 122345566655432111145 899999999864444433322 122211
Q ss_pred cccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 192 STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 192 ~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
. ++|++.+++. ++.+ +.++++.+...+.+.
T Consensus 145 ~-----------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 N-----------GFSSHFVSAK----TGDS-----------VFLCFQKVAAEILGI 174 (178)
T ss_dssp H-----------TCEEEEECTT----TCTT-----------HHHHHHHHHHHHTTC
T ss_pred c-----------CCcEEEEeCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1 1577777663 3332 788888888877654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=131.14 Aligned_cols=126 Identities=22% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.. ......+++..........++. .+.+|||||..+.......+ +
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~--- 78 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQY---M--- 78 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHH---H---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHH---H---
Confidence 457999999999999999999999875 3344445555544455566664 78899999986554433222 2
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 79 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 134 (181)
T 2fn4_A 79 ---RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPR 134 (181)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCH
T ss_pred ---hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCH
Confidence 3689999998876422112223445555333321 1269999999999965444433
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=135.18 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=89.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+|++.....+++.+++|.+.......+++..+.+|||||+.+.....+.. ......+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-- 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE-- 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH--
Confidence 4589999999999999999999998755567777888777777778889899999999996532211110 1111111
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. ..+..+..++..+.+..... .|+++|+||+|+.
T Consensus 81 ~~~ad~~i~v~D~~~-~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 IEQADRVLFMVDGTT-TDAVDPAEIWPEFIARLPAK--LPITVVRNKADIT 128 (172)
T ss_dssp HHTCSEEEEEEETTT-CCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred HHhCCEEEEEEECCC-CCCHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence 258999999988754 22333566777776654322 6999999999984
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-17 Score=131.68 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=98.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+..+..........++. .+.+|||||..+.... ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~- 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIY- 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHH-
Confidence 469999999999999999999998753 2223334444444445555554 6889999997432211 1111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...+|++++|++++..........++..+....+.. .|+++|+||+|+.++...+.++. +++....
T Consensus 76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 141 (170)
T 1z08_A 76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQEA--------ESYAESV--- 141 (170)
T ss_dssp -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHHH--------HHHHHHT---
T ss_pred -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHHH--------HHHHHHc---
Confidence 258899999988764221122235666666654433 68999999999975544444332 2222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+++++.+++. ++.+ +.+|++.+...+.
T Consensus 142 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~ 168 (170)
T 1z08_A 142 --------GAKHYHTSAK----QNKG-----------IEELFLDLCKRMI 168 (170)
T ss_dssp --------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHHH
T ss_pred --------CCeEEEecCC----CCCC-----------HHHHHHHHHHHHh
Confidence 1567766653 3333 7788887776654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=132.89 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+.........+.+ ..+.+|||||..+...... .++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~~ 76 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAP-------MYY 76 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccH-------hhC
Confidence 46999999999999999999999876321 1112222222222333443 5789999999843322211 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....
T Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~v 129 (170)
T 1z0j_A 77 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREV 129 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCS
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccccc
Confidence 68899999988764221122345666666543322 689999999999654443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=131.62 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++.. ......+++..........++ ..+.+|||||..+....... ++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT-------YS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG-------GT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHH-------HH
Confidence 46999999999999999999999665 233444444444455555666 46799999998765433322 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.++. +++....
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 141 (181)
T 3t5g_A 76 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEEG--------KALAESW--- 141 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHH--------HHHHHHT---
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHHH--------HHHHHHh---
Confidence 5899999998876422112223355555554332 1269999999999975555544432 1222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 142 --------~~~~~~~Sa~----~~~~-----------v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 142 --------NAAFLESSAK----ENQT-----------AVDVFRRIILEAEKM 170 (181)
T ss_dssp --------TCEEEECCTT----SHHH-----------HHHHHHHHHHHHHTC
T ss_pred --------CCcEEEEecC----CCCC-----------HHHHHHHHHHHHHHh
Confidence 1466666653 3332 788888888777654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-17 Score=131.51 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=67.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++.......+..+++.. .....++ ..+.+|||||..+....... ++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~~- 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGH-------CM- 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhh-------hh-
Confidence 48999999999999999999998775444444443332 2233343 47899999998543322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+.+... ....|+++|+||+|+.+....+.+
T Consensus 71 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~ 127 (166)
T 3q72_A 71 -AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD 127 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH
Confidence 588999999888643211222334445544321 122799999999999765554443
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=134.08 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.......+.+++ ..+.||||||..+....... .+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTA---YY---- 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHH---HH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH---Hh----
Confidence 469999999999999999999998764 233344445555555666677 57999999998554333222 12
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 138 (213)
T 3cph_A 91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 138 (213)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 58999999988764221122245666666654432 6999999999983
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=164.60 Aligned_cols=257 Identities=18% Similarity=0.260 Sum_probs=127.6
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-----CCCCCeeEEEEe--
Q 021685 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-----QSEGPRPVMVSR-- 82 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-----~~~t~~~~~~~~-- 82 (309)
..+++.+++...... .....-.|+|+|+|++|+|||||+|.|+|......+.. ...|........
T Consensus 10 ~~l~~~~l~~~y~~~--------~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--------SVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTTT--------TCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECCE--------EEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 457788887775421 11222358999999999999999999999764222210 011111111111
Q ss_pred eeCCe--EEEEEeCCCCCCCCCCc---HHHHHHH----HHh-----------hhcCCCcEEEEEEeCCccccChhHHHHH
Q 021685 83 SRAGF--TLNIVDTPGLIEGGYVN---YHAIQLI----KRF-----------LLNKTIDVLLYVDRLDVYRVDNLDKQIT 142 (309)
Q Consensus 83 ~~~g~--~l~liDTPG~~~~~~~~---~~~~~~i----~~~-----------~~~~~~d~il~v~~~d~~~~~~~d~~~l 142 (309)
...+. .++++||||++...... ....+.+ ..+ +.++.+|+|||++...++++++.+..++
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l 161 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM 161 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH
Confidence 22232 68999999997642111 1111111 111 2345678899995554446888888788
Q ss_pred HHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCC
Q 021685 143 RAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEND 222 (309)
Q Consensus 143 ~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~ 222 (309)
+.+.. ..++|+|+||+|+..+.+ ...+ .+.+++.+... +++++..++. ++.+.
T Consensus 162 k~L~~------~v~iIlVinK~Dll~~~e--v~~~----k~~i~~~~~~~-----------~i~~~~~sa~----~~~~v 214 (418)
T 2qag_C 162 KRLHE------KVNIIPLIAKADTLTPEE--CQQF----KKQIMKEIQEH-----------KIKIYEFPET----DDEEE 214 (418)
T ss_dssp HHHTT------TSEEEEEEESTTSSCHHH--HHHH----HHHHHHHHHHH-----------TCCCCCCC-----------
T ss_pred HHHhc------cCcEEEEEEcccCccHHH--HHHH----HHHHHHHHHHc-----------CCeEEeCCCC----CCcCH
Confidence 77753 268999999999863321 1111 13333333322 2444433321 12111
Q ss_pred cccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh
Q 021685 223 EKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302 (309)
Q Consensus 223 ~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 302 (309)
+. -...+...+++++.++...+..++..+++|. |+||...+...-++-|..+...+.+.+-.|+++.-...|
T Consensus 215 ~~-------~~~~l~~~iPfavv~s~~~~~~~g~~vr~R~-y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~ 286 (418)
T 2qag_C 215 NK-------LVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQ-YPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVH 286 (418)
T ss_dssp -----------------CCEEECC-------------CEE-CSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HH-------HHHHHHhhCCcceeecceeEecCCceeeccc-ccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11 1345556677777766666666677788888 999999999999999998666688888889888765543
Q ss_pred --hhhhccC
Q 021685 303 --ARASRRL 309 (309)
Q Consensus 303 --~~~~~~~ 309 (309)
.||.++|
T Consensus 287 Ye~yR~~~l 295 (418)
T 2qag_C 287 YENYRSRKL 295 (418)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 4666554
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=133.87 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=83.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++. .+.||||||..+....... ++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH-------hc
Confidence 469999999999999999999998764 2233344444444445556654 7999999998654433221 12
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+......+
T Consensus 79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 134 (206)
T 2bcg_Y 79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD 134 (206)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH
Confidence 6889999998876422112223456666555433 2689999999999755444443
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=131.64 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-------------------------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------------------- 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------------------- 86 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 469999999999999999999998863 222223333333333444443
Q ss_pred --------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021685 87 --------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 87 --------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
..+.||||||..+..... ..++ ..+|++++|++++..........++..+....+ .|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIV-------PLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTH-------HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHH-------HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 689999999975433221 1222 589999999887542211222345666655543 7999
Q ss_pred EEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHH
Q 021685 159 IVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVK 238 (309)
Q Consensus 159 iV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~ 238 (309)
+|+||+| ......+.++. +++.... ++|++.+++. ++.+ +.+|++
T Consensus 152 lv~NK~D-~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~Sa~----~~~~-----------i~~l~~ 196 (208)
T 3clv_A 152 LVANKID-KNKFQVDILEV--------QKYAQDN-----------NLLFIQTSAK----TGTN-----------IKNIFY 196 (208)
T ss_dssp EEEECTT-CC-CCSCHHHH--------HHHHHHT-----------TCEEEEECTT----TCTT-----------HHHHHH
T ss_pred EEEECCC-cccccCCHHHH--------HHHHHHc-----------CCcEEEEecC----CCCC-----------HHHHHH
Confidence 9999999 43334444433 2222221 2577777763 3332 677777
Q ss_pred HHHHHHh
Q 021685 239 TITEVVL 245 (309)
Q Consensus 239 ~i~~~~~ 245 (309)
.+...+.
T Consensus 197 ~l~~~~~ 203 (208)
T 3clv_A 197 MLAEEIY 203 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=131.64 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.......+..+.+ .......+++. .+.+|||||...... .. ....++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~--~~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDK---SW--SQESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC----------CH--HHHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccch---hh--hHHhhc
Confidence 4699999999999999999999998754444433333 23334455554 689999999854211 11 111222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... +. ....++..+.+... ....|+++|+||+|+.+....+.+
T Consensus 76 --~~~~~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~ 132 (175)
T 2nzj_A 76 --QGGSAYVIVYSIADRGSFE-SASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVE 132 (175)
T ss_dssp --TSCSEEEEEEETTCHHHHH-HHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred --ccCCEEEEEEECCCHHHHH-HHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHH
Confidence 5789999998886422 21 22345555544321 112799999999999755554443
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=129.94 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=83.3
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
.....++|+++|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+.......+ +
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~- 87 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY---M- 87 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHH---H-
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHH---H-
Confidence 345679999999999999999999997643 233333444444445556665 45679999985544333222 2
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.+
T Consensus 88 -----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~ 144 (183)
T 3kkq_A 88 -----RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD 144 (183)
T ss_dssp -----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH
T ss_pred -----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH
Confidence 3689999998886432112223455555554332 12689999999999755554444
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=151.36 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=141.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------CCCCCC-eeEEEEeeeCC--eEEEEEeCCCCCCCCCC---cH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYV---NY 105 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~-~~~~~~~~~~g--~~l~liDTPG~~~~~~~---~~ 105 (309)
.++++|+|++|+|||||+|.|+|......+. .+.... ....+.....+ ..++++|+||++..... .+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4899999999999999999999864322221 111111 11221122222 26899999999763221 11
Q ss_pred HHHHHHH----H----hh--------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 106 HAIQLIK----R----FL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 106 ~~~~~i~----~----~~--------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+.+. . .+ ...++++++++++...+.+++.|.++++.+.+. .++|+|+||+|...+
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 2222111 1 11 123579999997655567899998888888754 589999999998743
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHH-HHHHHHHhcCC
Q 021685 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLV-KTITEVVLNGS 248 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~-~~i~~~~~~~~ 248 (309)
++ ...+ ...+++.+... +++++.... +... .+.. . -...+. +.+++++.++.
T Consensus 156 ~e--~~~~----k~~i~~~l~~~-----------~i~i~~~~~----~~~~-~~~~----~-~~~~~~~~~~pfavv~s~ 208 (270)
T 3sop_A 156 EE--KSEF----KQRVRKELEVN-----------GIEFYPQKE----FDED-LEDK----T-ENDKIRQESMPFAVVGSD 208 (270)
T ss_dssp HH--HHHH----HHHHHHHHHHT-----------TCCCSSCSC----C----CHHH----H-HHHHHHHTTCSEECCCCC
T ss_pred HH--HHHH----HHHHHHHHHHc-----------CccccCCCC----CCcc-hHHH----H-HHHHHHhcCCCeEEEecc
Confidence 21 1111 23333333322 133321100 0000 0000 0 011222 46778888888
Q ss_pred CcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhccC
Q 021685 249 KALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRRL 309 (309)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (309)
..+..++..+++|. |+||...+...-+|.|..+...+.+..-.|+++.-...| .||.+||
T Consensus 209 ~~~~~~g~~~~~r~-y~wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 209 KEYQVNGKRVLGRK-TPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp CEEEETTEEEEEEC-CCC-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred eEEEeCCcEEEEee-cCceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999 999999999999999999777899999999988765443 3676665
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=132.01 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+|+|.+|+|||||+|+|++... .....+..+.+........++ ..+.+|||||..+...... ..+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~---- 84 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYI---- 84 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH---HHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH---HHh----
Confidence 459999999999999999999997653 222333444445455555666 4789999999744322221 112
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.++...+.+
T Consensus 85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 140 (179)
T 2y8e_A 85 --RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTE 140 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHH
Confidence 47899999988754221122345666665554433 689999999999655444443
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=130.23 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|+|++... .....+++..........++.. +.+|||||..+.......+ +
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 73 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY---M---- 73 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHH---H----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHH---H----
Confidence 469999999999999999999998763 3344455555555555566654 7789999986544433322 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.
T Consensus 74 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 74 --RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 3689999998886432112233455555554332 237999999999986
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=126.31 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.. .. ...++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~----~~~~~ 73 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNYF 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---HH----HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---HH----HHHHh
Confidence 469999999999999999999998763 23333444444444445555 478999999974321 11 12222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+.+.... ...|+++|+||+|+.+....+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1u8z_A 74 --RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 130 (168)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH
Confidence 4789999998876422112234455666555431 12799999999999654444443
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=136.02 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=98.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..++|+|+|.+|+|||||+|+|++.... ...+..+.+...........+..+.||||||..+...... .++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAP-------MYY- 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTH-------HHH-
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhH-------Hhh-
Confidence 4699999999999999999999987632 1222222222222222223456899999999744322221 122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++++|++++..........++..+.+..... .|+++|+||+|+.+....+.++. +++....
T Consensus 94 -~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~~--------~~~~~~~---- 158 (192)
T 2fg5_A 94 -RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKDA--------KEYAESI---- 158 (192)
T ss_dssp -TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHH--------HHHHHTT----
T ss_pred -ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHHH--------HHHHHHc----
Confidence 58899999988754221122345666666553222 69999999999964444443332 2222211
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
++|++.+++. ++.+ +.+|++.+...+..
T Consensus 159 -------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 159 -------GAIVVETSAK----NAIN-----------IEELFQGISRQIPP 186 (192)
T ss_dssp -------TCEEEECBTT----TTBS-----------HHHHHHHHHHTCC-
T ss_pred -------CCEEEEEeCC----CCcC-----------HHHHHHHHHHHHHh
Confidence 2577777653 3332 78888888776543
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=129.61 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=96.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.++|+++|.+|+|||||+|+|++.... .. ..++...........++ ..+.+|||||..+.. ... ..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~----~~~~ 72 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFR-ES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQ----RLSI 72 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCC-SS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHH----HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH---HHH----HHhc
Confidence 4699999999999999999999987532 11 11222222222233333 478999999985422 111 1222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+.+..+.....|+++|+||+|+.+......++. .++....
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~--------~~~~~~~--- 139 (172)
T 2erx_A 73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA--------EALARTW--- 139 (172)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH--------HHHHHHH---
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHH--------HHHHHHh---
Confidence 368999999887642211223445666665543222379999999999865544433222 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
++|++.+++. ++.+ +.+|++.+...+..
T Consensus 140 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 --------KCAFMETSAK----LNHN-----------VKELFQELLNLEKR 167 (172)
T ss_dssp --------TCEEEECBTT----TTBS-----------HHHHHHHHHHTCCS
T ss_pred --------CCeEEEecCC----CCcC-----------HHHHHHHHHHHHhh
Confidence 1566666653 3332 78888888776544
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=129.93 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=99.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+.........+. +..+.||||||..+...... .++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 82 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP-------MYY 82 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhH-------HHh
Confidence 46999999999999999999999876422 222233333333344444 34799999999743222211 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+....+.++. +++....
T Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 147 (181)
T 2efe_B 83 --RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAEDA--------QTYAQEN--- 147 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHHHH--------HHHHHHc---
Confidence 5899999998875422113334566666665432 268999999999975554444332 2222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
++|++.+++. ++.+ +.+|++.+...+.
T Consensus 148 --------~~~~~~~Sa~----~g~g-----------i~~l~~~l~~~~~ 174 (181)
T 2efe_B 148 --------GLFFMETSAK----TATN-----------VKEIFYEIARRLP 174 (181)
T ss_dssp --------TCEEEECCSS----SCTT-----------HHHHHHHHHHTCC
T ss_pred --------CCEEEEEECC----CCCC-----------HHHHHHHHHHHHH
Confidence 2577766653 3332 7888888776654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=130.05 Aligned_cols=120 Identities=17% Similarity=0.271 Sum_probs=79.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+++|+++|.+|+|||||+|+|++... .++..++.|.........+++..+.+|||||+.+...... .......++..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence 358999999999999999999998753 4555666666665656667888999999999976432221 11112233332
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++... . .....++..+.+. ..|+++|+||+|+.
T Consensus 80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 47899999977653 2 2233345444432 27999999999984
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-18 Score=155.58 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=122.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC------CCCC--eeEEEEeeeCC--eEEEEEeCCCCCCCC------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGP--RPVMVSRSRAG--FTLNIVDTPGLIEGG------ 101 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~--~~~~~~~~~~g--~~l~liDTPG~~~~~------ 101 (309)
-.++|+|+|++|+|||||+|+|+|...+..+..+ ..+. ....+.....+ ..++++||||+++..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3599999999999999999999987433322211 0111 11112222233 478999999995421
Q ss_pred -CCcHHHH----HHHHHh-------hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 102 -YVNYHAI----QLIKRF-------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 102 -~~~~~~~----~~i~~~-------~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+... ..++.. +...+++++||++.+..++++..+.++++.+.. . .++++|+||+|+..+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~----~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN----K--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT----T--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh----c--CCEEEEEEeCCCCCH
Confidence 1111000 111111 123456788888665544587777655554432 1 589999999998632
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc-hHHHHHHHHHHHhcCC
Q 021685 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPNLVKTITEVVLNGS 248 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w-~~~L~~~i~~~~~~~~ 248 (309)
++. ....+.+++.+... +++++.+++. ++ +.+..+ .+ ...+.+.+++++.++.
T Consensus 171 -----~e~-~~~~~~~~~~~~~~-----------~~~~~e~Sa~----~~-~v~e~f----~~l~~~i~~~~p~avigs~ 224 (301)
T 2qnr_A 171 -----KER-ERLKKRILDEIEEH-----------NIKIYHLPDA----ES-DEDEDF----KEQTRLLKASIPFSVVGSN 224 (301)
T ss_dssp -----HHH-HHHHHHHHHHHHHT-----------TCCCCCCC--------------C----HHHHHHHHTTCSEECCCCC
T ss_pred -----HHH-HHHHHHHHHHHHHc-----------CCeEEecCCc----cc-cccHHH----HHHHHHhhcCCCceEECCC
Confidence 111 11112333333321 2455444442 22 211111 01 1222334455555665
Q ss_pred CcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021685 249 KALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
..+..++..+++|. |+||...+...-+|.|..+...+. .+-.|+++.-...| .||.++
T Consensus 225 ~~~~~~g~~~~~r~-y~wg~~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~ 284 (301)
T 2qnr_A 225 QLIEAKGKKVRGRL-YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSER 284 (301)
T ss_dssp CBCC-----CBEEE-ETTEEEETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHH
T ss_pred ceEecCCcEEeeEc-CCCceEeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888888 999999999999999999777787 88888887654333 355544
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-16 Score=126.23 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+.. .. ...++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~----~~~~~ 72 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---SM----RDLYI 72 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---HH----HHHHh
Confidence 4699999999999999999999987632 22333333333444555554 58999999974422 11 11222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+......
T Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1kao_A 73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSS 128 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCH
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCH
Confidence 4679999998876421112223445555554331 2379999999999865444433
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=129.14 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+.... . ..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~----~~~~- 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL---A----PXYY- 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---H----HHHH-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh---h----hhhh-
Confidence 589999999999999999999987632 22223333333333444444 47899999997432211 1 2222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.+.
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 -RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE 123 (170)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred -ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence 68999999988764321122334566666554333 689999999998654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=135.84 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+|+|.+|||||||++++++... .....+..+.+........++ ..+.||||+|..+....... +.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~-------~~ 83 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPS-------YI 83 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHH-------HH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHH-------Hh
Confidence 459999999999999999999997653 222223333333344444444 46789999998654433222 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.++|++++|++++.......-..++..+....+.+ .|+++|+||+|+......+.++.. .+.+.+
T Consensus 84 --~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~------ 148 (216)
T 4dkx_A 84 --RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGE-----RKAKEL------ 148 (216)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHH-----HHHHHH------
T ss_pred --ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHh-----hHHHHh------
Confidence 68999999999875332233355777777776654 689999999999766666665432 222222
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+++++.+|+. ++.+ +.++++.|...+..
T Consensus 149 --------~~~~~e~SAk----tg~n-----------V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 149 --------NVMFIETSAK----AGYN-----------VKQLFRRVAAALPG 176 (216)
T ss_dssp --------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHC--
T ss_pred --------CCeeEEEeCC----CCcC-----------HHHHHHHHHHHHHh
Confidence 1466666663 4443 78888887776643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=129.52 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++... .....+++..........+ +..+.+|||||..+...... ..+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~---~~~---- 72 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD---LYM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHH---HHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHH---HHh----
Confidence 468999999999999999999998653 2222233333333333344 34789999999855432221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 73 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1c1y_A 73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGK 128 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCH
Confidence 3689999998876422112223455556554331 2279999999999965444333
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=132.10 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+..........++ ..+.+|||||..+. ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH
Confidence 4699999999999999999999987642 22223333334444455566 57899999997321 11222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+....+.+
T Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 136 (186)
T 2bme_A 81 --RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFL 136 (186)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH
Confidence 6899999998876422112223455556555433 2699999999999644444433
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=130.72 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|++... .....++.+.........+++..+.+|||||..+...... . ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--GA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--SC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--HH
Confidence 579999999999999999999998764 3334444555554555677888999999999865443321 1 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .......+.+..+.. . ..|+++|+||+|+.+
T Consensus 77 ~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 77 QVTDIVILVVAADD-GVMPQTVEAINHAKA---A--NVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCCEEEEEEETTC-CCCHHHHHHHHHHGG---G--SCCEEEEEETTTSSC
T ss_pred hhCCEEEEEEECCC-CCcHHHHHHHHHHHh---C--CCCEEEEEECccCCc
Confidence 68999999988754 233444444443322 2 269999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-16 Score=129.86 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+........... +..+.||||||..+...... .++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc
Confidence 35999999999999999999999876422 222222333333333333 45789999999865443322 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+......
T Consensus 93 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~ 147 (189)
T 2gf9_A 93 --RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPA 147 (189)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCH
Confidence 68999999988754221122345666666553222 69999999999965444333
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-16 Score=132.14 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.. .. ...+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~----~~~~ 82 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNY 82 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---HH----HHHH
Confidence 4579999999999999999999998763 333444444444445556664 78999999985432 11 1122
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+....+.+
T Consensus 83 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 140 (206)
T 2bov_A 83 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 140 (206)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH
Confidence 2 3789999998876432112234456666655431 12799999999999654444444
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=130.47 Aligned_cols=126 Identities=15% Similarity=0.087 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++...... ..+..+..........++ ..+.||||||..+.......+ +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 91 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY---Y---- 91 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH---h----
Confidence 469999999999999999999998764222 222333334444455555 478999999986544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+.+....+.+
T Consensus 92 --~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 147 (191)
T 2a5j_A 92 --RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKRE 147 (191)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHH
Confidence 58999999988764221122234666665543322 689999999999654444433
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=133.11 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++....... .+..+.......... .+..+.||||||..+....... .+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 95 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSA---YY--- 95 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHH---HH---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH---Hh---
Confidence 34699999999999999999999987643222 122222222223333 3457899999999654333221 12
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+..... ...|+++|+||+|+.+......
T Consensus 96 ---~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~ 150 (193)
T 2oil_A 96 ---RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPT 150 (193)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCH
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCH
Confidence 689999999887542111122345555544322 2368999999999965444333
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=129.22 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=77.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|+|++....... .+..+..........+ +..+.+|||||..+.... . ..++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~----~~~~ 76 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL---A----PMYY 76 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---H----HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh---h----HHhc
Confidence 4699999999999999999999986542211 1222222222233333 458999999997432211 1 1122
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... + .....++..+....... .|+++|+||+|+.+....+.+
T Consensus 77 --~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 77 --RGAQAAIVVYDITNEESF-ARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp --TTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH
T ss_pred --cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHH
Confidence 6899999998876422 2 22234556665554332 689999999998654444333
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-16 Score=126.57 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||..+. .......+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~---- 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYY---- 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHh----
Confidence 46999999999999999999999876422 1122222233333344444 47899999997432 22222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.+
T Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 141 (179)
T 1z0f_A 86 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE 141 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH
Confidence 48899999988764321122345666666554332 689999999999654444433
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-16 Score=139.06 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
.++|+++|.+|+|||||+|+|+|... .++..++.|.........+++..+.+|||||+.+........ ...+.++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhcc
Confidence 58999999999999999999999875 777888888888888888899999999999998754433221 1234455567
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++... . .....+...+.+. +. .|+++|+||+|+.
T Consensus 81 ~~d~vi~v~D~~~--~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 81 NADVIVDIVDSTC--L-MRNLFLTLELFEM-EV---KNIILVLNKFDLL 122 (271)
T ss_dssp CCSEEEEEEEGGG--H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred CCcEEEEEecCCc--c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence 9999999966542 2 2223333333332 21 6999999999975
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-17 Score=154.23 Aligned_cols=156 Identities=23% Similarity=0.311 Sum_probs=110.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLIK 112 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~-~~~~~~-----~~~~~~i~ 112 (309)
.++|+++|.+|+|||||+|+|++.+...+++.+++|.++....+.++|.++.||||||+. +..... ......+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~- 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI- 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH-
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh-
Confidence 489999999999999999999998877788899999998888888899999999999997 543221 1222333
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
..+|++|+|++++. ..+..+.++++.+ . .+|+++|+||+|+.+. .+.++ +++....
T Consensus 322 -----~~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~~--------~~~~~~~- 377 (482)
T 1xzp_A 322 -----EKADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEEE--------IKNKLGT- 377 (482)
T ss_dssp -----HHCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHHH--------HHHHHTC-
T ss_pred -----hcccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHHH--------HHHHhcC-
Confidence 47899999987653 3345555555443 1 2799999999998532 23322 2222211
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..|++.+|+. ++.+ +++|++.+...+.
T Consensus 378 -----------~~~~i~iSAk----tg~G-----------i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 -----------DRHMVKISAL----KGEG-----------LEKLEESIYRETQ 404 (482)
T ss_dssp -----------STTEEEEEGG----GTCC-----------HHHHHHHHHHHTH
T ss_pred -----------CCcEEEEECC----CCCC-----------HHHHHHHHHHHHh
Confidence 1577777763 4443 7888887777644
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-16 Score=127.26 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=82.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.. .. ...+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~----~~~~ 86 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNY 86 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---HH----HHHH
Confidence 3569999999999999999999998763 333344444444444555554 78999999975421 11 1222
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+....+.+
T Consensus 87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 144 (187)
T 2a9k_A 87 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 144 (187)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH
Confidence 2 4789999998876422112234455666655432 12799999999998654444433
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=134.25 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....++.+.+.......+++ ..+.||||||..+..... ..++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~ 78 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYY 78 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHH
Confidence 369999999999999999999997653 222223333344444555666 579999999974432111 1122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++...-...-..++..+....... .|+++|+||+|+.+....+.+
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 79 --RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHH
Confidence 58999999988764211122234666666553322 699999999999655444443
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=133.12 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+..........++ ..+.||||||..+...... .++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTR-------SYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHH-------HHh
Confidence 4699999999999999999999987642 22233334444444555666 5899999999743222221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 96 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 151 (200)
T 2o52_A 96 --RGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL 151 (200)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHH
Confidence 58999999988764221122234555565544322 689999999998644444443
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=123.44 Aligned_cols=119 Identities=21% Similarity=0.146 Sum_probs=76.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+... .....+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~---- 72 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYM---- 72 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---HHHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---HHHHhh----
Confidence 358999999999999999999998753 222333333333444445554 578999999854322 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 3689999998876422112224455666555431 1279999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=128.25 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
+..+++|+++|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.... ...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~ 88 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ 88 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHH-------HHH
Confidence 45679999999999999999999998753 233334444444445555554 5899999997432211 112
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+
T Consensus 89 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 89 YM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred hh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 22 5899999998876432112223455555554331 1279999999999864
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-17 Score=154.30 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=86.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-hhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~-~~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+.+.+++.+++|.+.......++|.++.||||||+.+.....+.. .++. ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhh
Confidence 4689999999999999999999999877788889999988888888899999999999996643222111 0111 112
Q ss_pred cCCCcEEEEEEeCCccccCh----hHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDN----LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~----~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
...+|++|+|++.+. ..+. .+..+++.+ . ..|+++|+||+|+.+.... + .+.+.+. .
T Consensus 310 ~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l----~---~~piIvV~NK~Dl~~~~~~--~------~~~l~~~---~ 370 (476)
T 3gee_A 310 MAEADLILYLLDLGT-ERLDDELTEIRELKAAH----P---AAKFLTVANKLDRAANADA--L------IRAIADG---T 370 (476)
T ss_dssp CSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHC----T---TSEEEEEEECTTSCTTTHH--H------HHHHHHH---H
T ss_pred cccCCEEEEEEECCC-CcchhhhHHHHHHHHhc----C---CCCEEEEEECcCCCCccch--h------HHHHHhc---C
Confidence 368999999988754 2333 233333332 2 2799999999998644321 1 0112221 0
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..|++.+++. ++.+ +++|++.+...+.
T Consensus 371 -----------~~~~i~vSAk----tg~G-----------I~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 -----------GTEVIGISAL----NGDG-----------IDTLKQHMGDLVK 397 (476)
T ss_dssp -----------TSCEEECBTT----TTBS-----------HHHHHHHHTHHHH
T ss_pred -----------CCceEEEEEC----CCCC-----------HHHHHHHHHHHHh
Confidence 0366766663 4433 8899998888776
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=134.85 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+++.......... .+..+.||||||..+....... ++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS-------FI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG-------GT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH-------HH
Confidence 5799999999999999999999987643 22223333222333333 3467899999998665443322 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+....+. ...|+++|+||+|+.+....+.++. ..+.+..
T Consensus 94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~------ 159 (201)
T 3oes_A 94 --IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVEG-----KKLAESW------ 159 (201)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHH-----HHHHHHH------
T ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHHH-----HHHHHHh------
Confidence 5899999998876422112223444444433221 1269999999999875555444332 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 160 --------~~~~~~~Sa~----~~~~-----------v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 160 --------GATFMESSAR----ENQL-----------TQGIFTKVIQEIARV 188 (201)
T ss_dssp --------TCEEEECCTT----CHHH-----------HHHHHHHHHHHHHHC
T ss_pred --------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1577766653 3322 778888877776544
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=126.46 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=74.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCC-CcHHHHHHHHHhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGY-VNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~-~~~~~~~~i~~~~ 115 (309)
.++|+++|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||..+... .... .+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~---~~---- 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH---CL---- 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CH---HH----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhh---hh----
Confidence 489999999999999999999986542222 22334444455555665 4678999999965322 1111 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+....+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 130 (169)
T 3q85_A 74 --QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE 130 (169)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH
Confidence 3689999998886532112223455555554331 12799999999998655444444
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=130.23 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.||||||..+. ... ...++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~----~~~~~ 96 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSI----TSAYY 96 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHH----HHHHh
Confidence 4699999999999999999999987642 22223333344444555565 47899999997321 111 22222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+.+....+.
T Consensus 97 --~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~ 151 (192)
T 2il1_A 97 --RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITR 151 (192)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCH
Confidence 47899999988764221122234556665553322 68999999999865444433
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-16 Score=130.53 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=79.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+..+.........+++ ..+.||||||..+. . .....+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~ 98 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---R----TITQSY 98 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG---H----HHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---H----HHHHHH
Confidence 3469999999999999999999998763 222222223334444555666 48999999997321 1 112223
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++.. ++ ..-..++..+....... .|+++|+||+|+......+.+
T Consensus 99 ~--~~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~ 155 (201)
T 2hup_A 99 Y--RSANGAILAYDITKRSSF-LSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLA 155 (201)
T ss_dssp H--TTCSEEEEEEETTBHHHH-HTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred H--hhCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHH
Confidence 3 689999999887642 22 22235666666654332 689999999999654444443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=150.38 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~--~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|++|||||||+|+|++...+.+++.+++|++.......++|..+.||||||+.... ...+.+......++ .
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--R 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--H
Confidence 7999999999999999999999877788899999888888888999999999999996421 12233333333333 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++|+|++... +++..+..+.+.+.+. + +|+++|+||+|+.
T Consensus 81 ~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 EADLVLFVVDGKR-GITKEDESLADFLRKS-T----VDTILVANKAENL 123 (439)
T ss_dssp TCSEEEEEEETTT-CCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence 8999999977643 4677777777666553 2 7999999999973
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-16 Score=133.08 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++ ..+.||||||..+....... ++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA-------YY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH-------Hh
Confidence 45999999999999999999999876422 2223334444444555666 57899999998654433221 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.++. .++....
T Consensus 84 --~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~--------~~~~~~~--- 148 (223)
T 3cpj_B 84 --RGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEES--------KTFAQEN--- 148 (223)
T ss_dssp --TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHHH--------HHHHHHc---
Confidence 58999999987754221122234566665543322 68999999999965444443322 1222111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+++++.+++. ++.+ +.+|++.+...+....
T Consensus 149 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 --------QLLFTETSAL----NSEN-----------VDKAFEELINTIYQKV 178 (223)
T ss_dssp --------TCEEEECCCC-----CCC-----------HHHHHHHHHHHHTTCC
T ss_pred --------CCEEEEEeCC----CCCC-----------HHHHHHHHHHHHHHHh
Confidence 2567666653 3332 7888888887776553
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=125.28 Aligned_cols=165 Identities=8% Similarity=0.005 Sum_probs=96.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+....... ++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNT-------YY- 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGGGHH-------HH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 357999999999999999999999876432222222 222344567899999999999554333221 12
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.++|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+... .+.++ +.+.+... .+
T Consensus 82 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~--------i~~~~~~~-~~ 147 (187)
T 1zj6_A 82 -TNTEFVIVVVDSTDRERISVT-REELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAE--------ISQFLKLT-SI 147 (187)
T ss_dssp -TTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHH--------HHHHHTGG-GC
T ss_pred -cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHH--------HHHHhChh-hh
Confidence 689999999887542 23222 234444433211 123799999999998632 22222 22222211 01
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....++++.+++. ++.+ +.+|++.+...+...
T Consensus 148 -----~~~~~~~~~~Sa~----~g~g-----------i~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 148 -----KDHQWHIQACCAL----TGEG-----------LCQGLEWMMSRLKIR 179 (187)
T ss_dssp -----CSSCEEEEECBTT----TTBT-----------HHHHHHHHHHHHCC-
T ss_pred -----cCCCcEEEEccCC----CCcC-----------HHHHHHHHHHHHHHH
Confidence 1123567766653 3333 788888888776544
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=139.35 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=84.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
.++|+++|.+|+|||||+|+|+|... .+++.+++|.......+.. +..+.+|||||..+......+ ....+.++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcC
Confidence 58999999999999999999999863 5777888888777766665 778999999999765432211 12234455446
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++++|++.+. . .....+...+.+. ..|+++|+||+|+.
T Consensus 80 ~~d~vi~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 80 RADSILNVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp CCSEEEEEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred CCCEEEEEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 8999999966542 2 2223344444431 27999999999985
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=126.88 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=79.9
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.++.......++|+++|.+|+|||||+|++.+.......+..+ .......+++..+.+|||||.... .
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~---~--- 74 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKI---R--- 74 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGG---H---
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHH---H---
Confidence 344555544567999999999999999999999886433222222 223345567889999999997421 1
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.....++ ..+|++++|++++.. ++... ..++..+.+..+ ....|+++|+||+|+.+.
T Consensus 75 -~~~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 -PYWRSYF--ENTDILIYVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp -HHHHHHH--TTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred -HHHHHHh--CCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence 1122222 689999999887542 22222 223332222111 123799999999998643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=126.60 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=75.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++++.... ...+ |.........+++..+.+|||||..+.... ...++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~-- 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY-- 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh--
Confidence 4699999999999999999999987642 2222 333444456677899999999998432211 11222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. ++...+ .++..+..... ....|+++|+||+|+.+.
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISK-SELVAMLEEEE-LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHH-HHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH-HHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence 589999999887542 232222 23333322111 123799999999998643
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-16 Score=129.18 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++... .....+++..........++. .+.||||||..+...... .+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 91 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP-------LS 91 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-------hh
Confidence 3569999999999999999999998763 223333333333334455554 569999999744332221 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++|++++|++++.. ++......++..+...... .|+++|+||+|+.+.
T Consensus 92 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 92 --YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRKD 142 (194)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCCT
T ss_pred --ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccC
Confidence 2689999999887642 2322234566666655332 699999999998643
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=127.34 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.||||||..+... .....++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~ 91 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYY 91 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHh
Confidence 56999999999999999999999876422 2223333344444555555 4799999999632110 1122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 92 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 147 (189)
T 1z06_A 92 --RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPT 147 (189)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceeCH
Confidence 6899999998876421112234466666665421 2379999999999965444333
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=127.64 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|+|++... .++..+++|..........++..+.+|||||..+....... ......++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID-EIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH-HHHHHHHHh
Confidence 3568999999999999999999999763 55666777777777777888999999999999765322211 111222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
...+|++++|++.. .+ .....++..+.+ . ..|+++|+||+|+........ ..+.+.+.+
T Consensus 83 ~~~~~~~i~v~d~~--~~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~~~~~~~~------~~~~~~~~~------- 141 (188)
T 2wjg_A 83 NEKPDLVVNIVDAT--AL-ERNLYLTLQLME---M--GANLLLALNKMDLAKSLGIEI------DVDKLEKIL------- 141 (188)
T ss_dssp HHCCSEEEEEEEGG--GH-HHHHHHHHHHHT---T--TCCEEEEEECHHHHHHTTCCC------CHHHHHHHH-------
T ss_pred ccCCCEEEEEecch--hH-HHHHHHHHHHHh---c--CCCEEEEEEhhhccccccchH------HHHHHHHHh-------
Confidence 24689999996654 22 223334444433 1 268999999999843222110 011222222
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+++++.+++. ++.+ +.+|++.+...+.+..
T Consensus 142 -------~~~~~~~Sa~----~~~~-----------v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 142 -------GVKVVPLSAA----KKMG-----------IEELKKAISIAVKDKK 171 (188)
T ss_dssp -------TSCEEECBGG----GTBS-----------HHHHHHHHHHHHTTC-
T ss_pred -------CCCeEEEEec----CCCC-----------HHHHHHHHHHHHHhcc
Confidence 1467766653 3332 7899998888876653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=128.12 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=77.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++.. ......+++..........++. .+.||||||..+....... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL-------C 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------G
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------h
Confidence 357999999999999999999999876 2334445555555555666665 5779999999665443221 1
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 89 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 89 Y--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp G--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred c--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 2 689999999887642 222222346666666543 279999999999863
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=126.06 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||....... . ..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~---~~~--- 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-E---RYL--- 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-H---HHH---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-H---HHH---
Confidence 3569999999999999999999998762 23333444433333444444 46889999998654332 1 122
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCCCCHH
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... +. .-..++..+...... ....|+++|+||+|+......+.+
T Consensus 90 ---~~~~~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 148 (187)
T 3c5c_A 90 ---NWAHAFLVVYSVDSRQSFD-SSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA 148 (187)
T ss_dssp ---TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH
T ss_pred ---hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH
Confidence 5799999998887432 32 223456666554311 112799999999999644444443
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=123.77 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=100.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+..+.........+++. .+.+|||||..+. ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH
Confidence 469999999999999999999998753 2222333333444445556664 7899999997321 11122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
..+|++++|++++.......-..++..+...... ....|+++|+||+|+. ......++. +++....
T Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~--------~~~~~~~- 145 (177)
T 1wms_A 78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEA--------QAWCRDN- 145 (177)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHH--------HHHHHHT-
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHH--------HHHHHhc-
Confidence 6899999998876432112224566666655431 1236999999999986 333333322 2222211
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
..+|++.+++. ++.+ +.++++.+...+..
T Consensus 146 ---------~~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~ 174 (177)
T 1wms_A 146 ---------GDYPYFETSAK----DATN-----------VAAAFEEAVRRVLA 174 (177)
T ss_dssp ---------TCCCEEECCTT----TCTT-----------HHHHHHHHHHHHHT
T ss_pred ---------CCceEEEEeCC----CCCC-----------HHHHHHHHHHHHHh
Confidence 12577777653 3333 78888888777654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=128.49 Aligned_cols=167 Identities=17% Similarity=0.104 Sum_probs=99.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++..... ...++...........++ ..+.||||||..+.. ... ..+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~ 76 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQ----RLS 76 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHH----HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHH----HHh
Confidence 356999999999999999999999865321 111222222222233343 478999999974322 111 122
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
+ ..+|++++|++++... +. ....++..+.+..+.....|+++|+||+|+.+ .....++. .++....
T Consensus 77 ~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~--------~~~~~~~- 143 (199)
T 2gf0_A 77 I--SKGHAFILVFSVTSKQSLE-ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREA--------QAVAQEW- 143 (199)
T ss_dssp H--HHCSEEEEEEETTCHHHHH-TTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHH--------HHHHHHH-
T ss_pred h--ccCCEEEEEEECcCHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHH--------HHHHHHh-
Confidence 2 4689999998876422 22 22345555665544322379999999999864 33333322 1111111
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021685 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
+++++.+++. ++.+ +.+|++.+...+......
T Consensus 144 ----------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~~~~ 175 (199)
T 2gf0_A 144 ----------KCAFMETSAK----MNYN-----------VKELFQELLTLETRRNMS 175 (199)
T ss_dssp ----------TCEEEECBTT----TTBS-----------HHHHHHHHHHHCSSSCEE
T ss_pred ----------CCeEEEEecC----CCCC-----------HHHHHHHHHHHHhhhhcc
Confidence 1466666653 3333 789999888877665433
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=129.90 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++... .....+..+.+.......+++. .+.||||||..+. ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH
Confidence 469999999999999999999998753 2222333334444445556664 7899999997321 11122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 97 --~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~ 152 (201)
T 2ew1_A 97 --RSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ 152 (201)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH
Confidence 68999999988754221112245666666554322 689999999999644444433
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-16 Score=128.12 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=97.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++++... ....+ |.........+++..+.+|||||..+. ......+ .
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~--~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNY--F 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCC--CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGG--C
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Ccccc--cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHH--h
Confidence 579999999999999999999998762 22222 233344455668899999999998321 1111122 2
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++++|++++.. ++.. ...++..+.+... ....|+++|+||+|+.+.. +.++ +.+.+... ..
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~~~~--------~~~~~~~~-~~- 149 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQD-CQRELQSLLVEER-LAGATLLIFANKQDLPGAL--SCNA--------IQEALELD-SI- 149 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCC--CHHH--------HHHHTTGG-GC-
T ss_pred cCCCEEEEEEECcCHHHHHH-HHHHHHHHHhChh-cCCCcEEEEEeCccCCCCC--CHHH--------HHHHhChh-hc-
Confidence 689999999887542 1221 1233333332211 1237999999999986432 2222 22222211 00
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....+|++.+++. ++.+ +.++++.+...+...
T Consensus 150 ----~~~~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 150 ----RSHHWRIQGCSAV----TGED-----------LLPGIDWLLDDISSR 181 (186)
T ss_dssp ----CSSCEEEEECCTT----TCTT-----------HHHHHHHHHHHHHTC
T ss_pred ----cCCceEEEEeeCC----CCCC-----------HHHHHHHHHHHHHhc
Confidence 1123577766653 3332 788888888777554
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=126.59 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||..+...... .+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS- 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh-
Confidence 459999999999999999999998753 23333444444444555555 5789999999865433221 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++......++..+.+... ..|+++|+||+|+.+
T Consensus 87 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 87 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2589999999887542 233333356666666533 279999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=126.96 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=78.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~l~liDTPG~~~~~~~~~ 105 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.... ....... ...+.+|||||..+. .
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---R- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---H-
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---H-
Confidence 469999999999999999999998653 1122222222222 2233333 348999999998321 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.....++ ..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+......
T Consensus 85 ---~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 85 ---SLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp ---HHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCH
T ss_pred ---HHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCH
Confidence 1222233 6899999998875422112224566666554331 2279999999999865444333
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=127.51 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=73.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|++++.... ....+..+..........+ ...+.+|||||..+... ....+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------hhHHH
Confidence 5799999999999999999999987632 2222333344444455544 35899999999643211 11122
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~ 167 (309)
+ ..+|++++|++++..........++..+..... .....|+++|+||+|+.
T Consensus 79 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 79 Y--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp S--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred h--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 2 588999999887643211223455666655543 11236999999999985
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=127.54 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....++...........++ ..+.+|||||..+ .......+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---- 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM---- 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh----
Confidence 5699999999999999999999987642 2222233333333344454 4689999999965 22222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+....+.+
T Consensus 97 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 97 --RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH
Confidence 4689999998876422112223455556554321 12689999999999654444443
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=127.03 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+...... .+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 73 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS- 73 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hh-
Confidence 469999999999999999999997653 223333333334444455554 567999999854322211 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 74 -YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred -ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 2689999999887642 233333356667766543 279999999999863
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=130.49 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc-cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+||+|+|.+|+|||||+|+|++...... .+..+.+...........+..+.||||||... +......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYY- 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHH-
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 469999999999999999999998653211 11122222333333334567899999999521 111222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+......+
T Consensus 94 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 94 -RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH
Confidence 68999999988764221123345677776654333 699999999998644444333
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=128.35 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.||||||..+. .... ..++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~----~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIA----KSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHH----HHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhH----HHHH
Confidence 56999999999999999999999876321 1111222222223344444 46999999997432 2111 2222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 99 --~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 --RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred --hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 47899999988754221122234666665543322 6999999999985
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=150.07 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=103.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+...+++.+++|.+.......++|.++.||||||+.+.....+.. .+++.. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhh
Confidence 4689999999999999999999998776788888888877666777899999999999996543222111 011111 2
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
...+|++++|++.+. ..+..+..+++.+.. +|+++|+||+|+.+..... .+.. +.
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~~~~~--------------~~~~---~~ 355 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVEKQLIT--------------SLEY---PE 355 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSCGGGST--------------TCCC---CT
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCcchhhH--------------HHHH---hc
Confidence 368999999987754 456666666555432 5999999999986432211 1111 10
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
...|++.+++. ++.+ +++|++.+...+...
T Consensus 356 ------~~~~~i~iSAk----tg~G-----------i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 356 ------NITQIVHTAAA----QKQG-----------IDSLETAILEIVQTG 385 (462)
T ss_dssp ------TCCCEEEEBTT----TTBS-----------HHHHHHHHHHHHTTS
T ss_pred ------cCCcEEEEECC----CCCC-----------HHHHHHHHHHHHhcc
Confidence 12577777763 4433 889999988877543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=127.82 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=78.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+|+|.+|+|||||+|+|++..... ...+..+........... +..+.||||||..+. ......++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~- 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY- 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG-
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh-
Confidence 5899999999999999999999876422 112222222222333344 358899999998321 11222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+......
T Consensus 79 -~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~ 133 (203)
T 1zbd_A 79 -RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSS 133 (203)
T ss_dssp -GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCCSCH
T ss_pred -cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccccCH
Confidence 5789999998875422112223455666554322 269999999999965444443
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=130.33 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+...... .+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~ 102 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP-------LF 102 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHH-------HH
Confidence 3569999999999999999999998763 222333333444444555554 789999999754322211 12
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 103 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 103 Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 2 589999999887542 232222346666665432 269999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=129.01 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++..... ...+++..........++ ..+.||||||..+....... +
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~- 93 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S- 93 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG-------G-
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------h-
Confidence 46899999999999999999999876422 222233333333345555 47899999998654432211 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++...+..++..+..... ..|+++|+||+|+.+
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 94 -YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp -CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 1589999999888653 243444566767766432 279999999999863
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=127.68 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=78.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|++...+.... ..|.........+++..+.||||||..+..... ..++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~-- 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY-- 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--
Confidence 56999999999999999999999886323222 233344555667788999999999985433221 1222
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++... +... ..++..+...... ....|+++|+||+|+..
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 5789999998875421 2222 2344444333211 02379999999999963
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=150.38 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=85.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..++|+|+|.+|+|||||+|+|++.....++..+++|.++......+.+. ++.+|||||+.+.........+....++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l- 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF- 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH-
Confidence 46899999999999999999999998766777888888888777777766 8999999999876544332222222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++|+|++ . ...+.+..++..+.+. + .|+++|+||+|+.....
T Consensus 112 -~~aD~vllVvD--~-~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 112 -YRADCGILVTD--S-APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp -TSCSEEEEECS--S-SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCCC
T ss_pred -hcCCEEEEEEe--C-CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCccH
Confidence 68999999954 4 5667778888888765 2 79999999999865443
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=127.89 Aligned_cols=120 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.+........++ ..+.||||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH
Confidence 5799999999999999999999987642 22223333444444445554 5789999999754332221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..++..+...... ....|+++|+||+|+.
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 --RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred --hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 5899999998875422112223455555554431 1236999999999986
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-15 Score=125.55 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|||||||+|++++.... ....+.++.+.......+++. .+.+|||||..+. ..... ..++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~~~~~---~~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---GGWLR---DHCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---GHHHH---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---hhhhH---HHhh
Confidence 5699999999999999999999875432 223344455555555566665 6788999998432 11111 1122
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccc
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW 194 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 194 (309)
..+|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+....+.++.. ++....
T Consensus 95 --~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~--------~~a~~~-- 160 (195)
T 3cbq_A 95 --QTGDAFLIVFSVTDRRSFSK-VPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGR--------HLAGTL-- 160 (195)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHH--------HHHHHT--
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHH--------HHHHHh--
Confidence 4789999998886422 222 23455555554321 13799999999999755555444321 111111
Q ss_pred ccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 195 MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 195 ~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+++++.+++. ++.+ +.++++.+...+...
T Consensus 161 ---------~~~~~e~Sa~----~~~~-----------v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 161 ---------SCKHIETSAA----LHHN-----------TRELFEGAVRQIRLR 189 (195)
T ss_dssp ---------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHHHTT
T ss_pred ---------CCEEEEEcCC----CCCC-----------HHHHHHHHHHHHHHh
Confidence 1466666653 3332 788888887776543
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-15 Score=125.77 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+|+|.+|+|||||+|++++..... ..+ |...........+..+.+|||||..+....... .+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~------ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRH---YF------ 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHH---HH------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHH---Hh------
Confidence 57999999999999999999999876422 222 233334455668889999999998654332221 22
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~-~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQES-ADELQKMLQEDE-LRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccc-cCCCeEEEEEECCCCCC
Confidence 488999999887542 22222 233333322111 11379999999999853
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=128.12 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|++++..... ..+ |..........++..+.+|||||..+....... ++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~-------~~- 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC-------YF- 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS-------SS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 357999999999999999999998876432 222 222333445667889999999998654333211 11
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 88 -~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 88 -SDTDAVIYVVDSTDRDRMGVAK-HELYALLDEDE-LRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -TTCCEEEEEEETTCCTTHHHHH-HHHHHHHTCST-TTTCEEEEEEECTTSTTC
T ss_pred -hcCCEEEEEEeCCCHHHHHHHH-HHHHHHHhhhh-cCCCeEEEEEECCCCcCC
Confidence 589999999887542 232222 22332222111 123799999999998643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=132.31 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=77.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
.+.++|+++|.+|+|||||+|++++... .....+++..........++. .+.||||||..+...... .+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-------HH
Confidence 3579999999999999999999997653 333344444444444555555 456999999854332221 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 99 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 99 --YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHHT
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhcc
Confidence 2689999999887642 232222356666666542 279999999999863
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=126.49 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.||||||..+...... ..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~---- 85 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTP---SYY---- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHH---HHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhH---HHh----
Confidence 4699999999999999999999987632 22222222333333344443 5789999999854433322 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+..... ....|+++|+||+|+. ......++. .++....
T Consensus 86 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~-~~~~~~~~~--------~~~~~~~--- 150 (195)
T 1x3s_A 86 --RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE-NREVDRNEG--------LKFARKH--- 150 (195)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS-SCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc-ccccCHHHH--------HHHHHHc---
Confidence 589999999887542111122344444443322 1236899999999984 333333322 1222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.++++.+++. ++.+ +.+|++.+...+...
T Consensus 151 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 151 --------SMLFIEASAK----TCDG-----------VQCAFEELVEKIIQT 179 (195)
T ss_dssp --------TCEEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred --------CCEEEEecCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1566666653 3332 788888888777654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=125.86 Aligned_cols=118 Identities=9% Similarity=0.039 Sum_probs=75.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
....++|+++|.+|+|||||+|+|++.......+..+.+. ....+++..+.+|||||..+..... ..++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 86 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRSSW-------NTYY 86 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTCGG-------GGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHHHH-------HHHh
Confidence 3457999999999999999999999987533333333222 2445678999999999985432221 1222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++.. ...++..+.+... ....|+++|+||+|+..
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISV-TREELYKMLAHED-LRKAGLLIFANKQDVKE 136 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhChh-hCCCeEEEEEECCCccc
Confidence 689999999887542 1222 2233333332211 12379999999999853
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=122.04 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||+|++++.... ...+ |...........+..+.+|||||..+. . .....++ .+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~---~----~~~~~~~--~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---R----PLWRHYF--QN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG---H----HHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh---H----HHHHHHh--cc
Confidence 58999999999999999999976632 2222 222333445567889999999998431 1 1122222 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 68 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEA-REELMRMLAEDE-LRDAVLLVFANKQDLPN 115 (164)
T ss_dssp CSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCeEEEEEECcCCcC
Confidence 9999999887542 12222 223333322111 12369999999999853
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=126.70 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+|+|.+|+|||||+|+|++.... .... .|...........+..+.||||||..+. ......++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~-- 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--PTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYC-- 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--CCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHH--
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--CCCceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHH--
Confidence 5699999999999999999999987642 1111 2222233345667889999999997321 11122233
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+..
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQ-LQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCCEEEEEECCCCcc
Confidence 689999999887542 22221 223333322211 12379999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=127.28 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=76.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.....+|+|+|.+|+|||||+|+|++.....+...+ |...........+..+.||||||..+..... ..++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 84 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY 84 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH
Confidence 346799999999999999999999998753322222 2223344456778899999999984432211 1222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc------cccCcEEEEEecccCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE------QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~------~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++|+|++++... +... ..++..+...... ....|+++|+||+|+...
T Consensus 85 --~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 85 --DNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp --TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred --hcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 6899999998876422 3222 2333333322110 013799999999998643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=137.83 Aligned_cols=125 Identities=16% Similarity=0.236 Sum_probs=88.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HH-HHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HA-IQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~-~~-~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.. ..++..+.+|...........+..+.+|||||+.+...... .. ...+..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 457899999999999999999999987 35566677777776666667788999999999976432211 11 1122211
Q ss_pred hhcCCCcEEEEEEeCCcc-ccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++|+|++++.. .++ .....++..+...++ ..|+++|+||+|+.
T Consensus 244 --~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 244 --RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp --GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred --HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 2468999999775432 223 233567777777654 27999999999985
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=127.26 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+... ......++ ..+.||||||..+...... .+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~- 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP-------LS- 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh-
Confidence 46999999999999999999999876422 2222222222 22344555 4789999999754322221 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. .+...+..++..+..... ..|+++|+||+|+.+
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 94 -YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 2689999999888643 233333456666666432 279999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=125.80 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=72.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+...... .++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTGG-------GTT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence 357999999999999999999999876422222222 22334556788999999999965433221 112
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++.. ...++..+..... ....|+++|+||+|+.+
T Consensus 84 -~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 84 -ADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEE-LQDAALLVFANKQDQPG 133 (183)
T ss_dssp -TTEEEEEEEEETTCTTTHHH-HHHHHHHHTTSST-TSSCEEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCHHHHHH-HHHHHHHHHcChh-hCCCeEEEEEECCCCCC
Confidence 589999999887532 1211 1223333322110 12379999999999854
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-16 Score=130.29 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeCC----eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG----FTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g----~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
..++|+|+|.+|+|||||+|+|++..........+++ .+.......+++ ..+.||||||.. .......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHH
Confidence 4589999999999999999999988322333333332 233344455554 589999999982 1112222
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCC
Q 021685 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~ 168 (309)
.+ ...+|++++|++++..........++..+....+. ....|+++|+||+|+.+
T Consensus 92 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QY--WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TT--CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HH--HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 22 26899999998876422112334566666665430 01279999999999965
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-15 Score=124.21 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...+||+++|.+|||||||+|.+++............+......... .....+.||||||..+...........+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---- 93 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF---- 93 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc----
Confidence 35799999999999999999999986432211111122222222222 2346899999999866433320001122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. +......+..++.+........|+++|+||+|+.+
T Consensus 94 --~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 94 --RGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp --HTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --ccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 479999999888652 33344445555554421122379999999999863
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=127.76 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||..+...... .++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhc
Confidence 469999999999999999999997653 23333333344444445555 4889999999965433221 122
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. .+......++..+....+ ..|+++|+||+|+.+
T Consensus 79 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 79 --RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 689999999887542 232222356666666543 279999999999853
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=119.52 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++..... ..++...........++. .+.+|||||... . ..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---~~~--- 70 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---KFS--- 70 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---HHH---
Confidence 356999999999999999999999876432 222223333444555654 678999999853 1 222
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++...-...-..+++.+...... ....|+++|+||+|+.
T Consensus 71 ---~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 71 ---GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3689999998876422112223344445544321 1236999999999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=138.95 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=86.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh--h
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--L 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~--~ 115 (309)
...+|+++|++|+|||||+|+|+|.....+++.+++|..........++..+.++||||+.. ......-+.+... .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~--~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM--EEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH--HHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc--cchhhHHHHHHHHHHH
Confidence 34689999999999999999999998777777777887766666677888999999999941 0000110111110 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|++++|++.+. ++..+..+++.+.. ...|+++|+||+|+.
T Consensus 85 ~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp CCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 1258899999977653 77777766665542 127999999999985
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=135.49 Aligned_cols=163 Identities=11% Similarity=0.113 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+|+|.+|+|||||+|+|++.... ...+ |...........+..+.||||||..+....... ++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH-------YF-- 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CCSHHH-------HH--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHH-------Hh--
Confidence 4579999999999999999999987742 2222 444445566678889999999997554433221 22
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++|+|++++.. ++......+...+..... ...|+++|+||+|+.... ..+ .+.+.+.... .
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~~--~~~--------~i~~~~~~~~-~- 296 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNAM--NAA--------EITDKLGLHS-L- 296 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTCC--CHH--------HHHHHHTCTT-C-
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCccc--CHH--------HHHHHhchhh-h-
Confidence 589999999888542 233333333333322211 136899999999986432 222 2222222110 0
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
....+|++.+++. ++.+ +.+|++.+...+..
T Consensus 297 ----~~~~~~~~~vSAk----~g~g-----------i~el~~~l~~~l~~ 327 (329)
T 3o47_A 297 ----RHRNWYIQATCAT----SGDG-----------LYEGLDWLSNQLRN 327 (329)
T ss_dssp ----CSSCEEEEECBTT----TTBT-----------HHHHHHHHHHHHTC
T ss_pred ----hcCCCEEEEEECC----CCcC-----------HHHHHHHHHHHHHh
Confidence 1123677777663 3333 78898888877654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=127.46 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc
Confidence 469999999999999999999997652 22222222221111222333 3567999999865433221 122
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 78 --RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 589999999887542 232223346666766543 279999999999853
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=132.15 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=79.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
....++|+++|.+|+|||||+|+++... .....+..+.+...........+..+.||||||..........+ +
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~--- 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY---Y--- 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH---H---
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH---H---
Confidence 3457999999999999999999955332 22233344444444444443445689999999975544433322 2
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.......-..++..+.+... ..|+++|+||+|+.+
T Consensus 86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 589999999888643211222356666666543 269999999999863
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=124.19 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=76.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+++|.+|+|||||+|++.+....... .|.........+++..+.+|||||..+...... .++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~-- 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF-- 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--
Confidence 4689999999999999999999987643222 233334556677889999999999855332221 122
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+.+
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEA-RVELDALFNIAE-LKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCChHHHHHH-HHHHHHHHcchh-hcCCCEEEEEECCCCcC
Confidence 588999999887542 22222 233333332211 12379999999999863
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=129.09 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCc
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~liDTPG~~~~~~~~ 104 (309)
...++|+|+|.+|+|||||+|+|++... .....+..+.........++ ...+.||||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 3469999999999999999999998753 11111111112222223333 4579999999952
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcc--ccCcEEEEEecccCCCCCCCC
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~--~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.+......++ ..+|++++|++++... ....+..++....... ...|+++|+||+|+.+....+
T Consensus 96 -~~~~~~~~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 160 (217)
T 2f7s_A 96 -RFRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160 (217)
T ss_dssp -HHHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred -hHHhHHHHHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence 2222223333 6899999998875421 1111222222222111 237899999999986444433
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=123.05 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~-~i~~ 113 (309)
..++|+++|.+|+|||||+|++++... ....++++..... ..++ +..+.||||||..+ +.. ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHES-------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHH-------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEE--EEecCCCccEEEEEECCCChh-------HHHHHHHH
Confidence 469999999999999999999998763 2333333333333 4444 67899999999832 112 1222
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHh----CccccCcEEEEEecccCCCCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~----g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++ .++|++++|++++. +........+.+...+ ......|+++|+||+|+.+..
T Consensus 75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 33 58999999977653 2222223333333221 112237999999999996443
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=149.74 Aligned_cols=138 Identities=16% Similarity=0.188 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE---------EEEee--------
Q 021685 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV---------MVSRS-------- 83 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~---------~~~~~-------- 83 (309)
+...+.++...+.......++|+|+|.+|+|||||+|+|+|.+...++..+++..... +....
T Consensus 51 l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~ 130 (695)
T 2j69_A 51 LERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQL 130 (695)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEE
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCccccc
Confidence 3334444444333333367999999999999999999999998777776555421100 00000
Q ss_pred ----------eCC------------------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEE
Q 021685 84 ----------RAG------------------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123 (309)
Q Consensus 84 ----------~~g------------------------------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (309)
..+ ..+.||||||+.+......... .++ ..+|++
T Consensus 131 ~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~----~~i--~~aD~v 204 (695)
T 2j69_A 131 DFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSL----GYV--NNCHAI 204 (695)
T ss_dssp EHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHT----HHH--HSSSEE
T ss_pred ChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHH----HHH--HhCCEE
Confidence 000 3689999999965332222222 233 479999
Q ss_pred EEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 124 l~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
|||++.+. .++..+..++....... ..|+++|+||+|+..+
T Consensus 205 L~Vvda~~-~~s~~e~~~l~~~l~~~----~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 205 LFVMRASQ-PCTLGERRYLENYIKGR----GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp EEEEETTS-TTCHHHHHHHHHHTTTS----CCCEEEEEECGGGGGG
T ss_pred EEEEeCCC-ccchhHHHHHHHHHHhh----CCCEEEEEECcccccc
Confidence 99977653 35666665553222211 2689999999998644
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-15 Score=125.34 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++++|+++|.+|+|||||+|++.+.......+..+. ......+++..+.+|||||..+...... .++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL- 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence 3569999999999999999999998764322222222 2345567789999999999855433221 122
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+..
T Consensus 91 -~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 91 -PAINGIVFLVDCADHERLLES-KEELDSLMTDET-IANVPILILGNKIDRPE 140 (198)
T ss_dssp -GGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTSCEEEEEECTTSTT
T ss_pred -hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEEECCCccc
Confidence 478999999887542 22222 233333332211 12379999999999853
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-17 Score=138.93 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++ ..+.||||||..+.......+ +
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY---Y---- 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH---h----
Confidence 469999999999999999999998764 222233334445555556666 478999999986544333221 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+...
T Consensus 104 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~ 155 (199)
T 3l0i_B 104 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKV 155 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--CC
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcccc
Confidence 6899999997765321111223345445433222 269999999999865443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=118.21 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
++|+++|.+|+|||||+|++++.. +..+..+++|......... .+.+|||||+.+....+. .+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999986 3555666666665554432 689999999865443322 2222223333
Q ss_pred h--cCCCcEEEEEEeCCccccChh------------HHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 L--NKTIDVLLYVDRLDVYRVDNL------------DKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~--~~~~d~il~v~~~d~~~~~~~------------d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ...++++++|.+.+ .+... +.+++..+.. ...|+++|+||+|+..
T Consensus 77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCS
T ss_pred HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccC
Confidence 2 35677888885543 22221 1222222222 1279999999999863
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=125.59 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 20 ATQTKLLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~-~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.+.+.+.+...... ....++|+++|.+|+|||||+|+|++...... +..+.. ...+.+..+.+|||||
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G 100 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-------AADYDGSGVTLVDFPG 100 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETT
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-------eeeecCCeEEEEECCC
Confidence 3344444444333322 23568999999999999999999998763221 111111 1223566899999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCC-cc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCCCCCC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d-~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..+.......+ ++..+ ..+|++++|++++ .. .+.. ...++..+..... .....|+++|+||+|+.+..
T Consensus 101 ~~~~~~~~~~~---~~~~~--~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-- 172 (193)
T 2ged_A 101 HVKLRYKLSDY---LKTRA--KFVKGLIFMVDSTVDPKKLTT-TAEFLVDILSITESSCENGIDILIACNKSELFTAR-- 172 (193)
T ss_dssp CCBSSCCHHHH---HHHHG--GGEEEEEEEEETTCCHHHHHH-HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC--
T ss_pred CchHHHHHHHH---HHhhc--ccCCEEEEEEECCCCchhHHH-HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC--
Confidence 96654433332 22222 4689999998775 21 1211 1223333332211 01127999999999996443
Q ss_pred CHHHHHHhhhHHHHHh
Q 021685 173 DYEVFCSKRSEALLKF 188 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~ 188 (309)
..++..+...+.+..+
T Consensus 173 ~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 173 PPSKIKDALESEIQKV 188 (193)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455443333334333
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-15 Score=122.17 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=75.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++.... ....++...........++ ..+.+|||||..+...... .+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS- 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GG-
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hh-
Confidence 5699999999999999999999987531 2222222222223334443 4789999999854322211 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..++|++++|++++.. ++......++..+.+... ..|+++|+||+|+.
T Consensus 76 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 76 -YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred -cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 2689999999887642 122222345666655432 26999999999985
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=121.82 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+|+|.+|||||||+|++++.........+.++.........++|. .+.+|||+|... . ...+.. .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~-~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHD-H 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHH-C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHH-H
Confidence 46999999999999999999999865434444444445544555566765 467899999732 1 112221 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
....+|++++|++++.. ++... ..+...+.+... ....|+++|+||+|+.+......+
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~ 166 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVS 166 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHH
T ss_pred HHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHH
Confidence 23578999999888653 23222 234444443211 123799999999998644444433
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=147.47 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~~ 118 (309)
.+|+++|++|||||||+|+|+|...+.+++.+++|++.......+++..+.||||||+...... .+++......++ .
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--D 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence 6899999999999999999999887778888999998888888889999999999999632211 112222222223 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... +++..+..+.+.+.+ ..+|+++|+||+|+.
T Consensus 82 ~ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 82 EADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNT 124 (436)
T ss_dssp HCSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC-
T ss_pred hCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCc
Confidence 7999999977643 466777666655543 127999999999985
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=135.47 Aligned_cols=138 Identities=20% Similarity=0.304 Sum_probs=78.9
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCee---EEEE--------------------
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---VMVS-------------------- 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~---~~~~-------------------- 81 (309)
|.+++..+........+|+|+|.+|+|||||+|+|+|......+. ..+|..+ ....
T Consensus 10 l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (315)
T 1jwy_B 10 LQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGS-GIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKP 88 (315)
T ss_dssp HHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSST
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCC-CceeeeeEEEEEEeCCCcccccchhhhhhhhccc
Confidence 344433333223456899999999999999999999987522211 1112211 0000
Q ss_pred -------------------------------------eeeCCeEEEEEeCCCCCCCC------CCcHHHHHHHHHhhhcC
Q 021685 82 -------------------------------------RSRAGFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 82 -------------------------------------~~~~g~~l~liDTPG~~~~~------~~~~~~~~~i~~~~~~~ 118 (309)
....+..+.||||||+.+.. ...+........++ .
T Consensus 89 ~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~ 166 (315)
T 1jwy_B 89 NDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--K 166 (315)
T ss_dssp TCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--H
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--c
Confidence 11134579999999996522 12222333333444 5
Q ss_pred CCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+|++++|++.....+...+ ..+++.+.. ...|+++|+||+|+.+++
T Consensus 167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 167 KQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp STTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS
T ss_pred CCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc
Confidence 88999999765322344333 355555432 127999999999997544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=147.17 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~ 116 (309)
...+|+|+|++|||||||+|+|+|...+.+.+.+++|.+.......+.+..+.||||||+...... .+++......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~- 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM- 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH-
Confidence 457999999999999999999999987778888899998888888888999999999998643222 223333333333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 101 -~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 -DEADVIIFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT 144 (456)
T ss_dssp -HHCSEEEEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred -hhCCEEEEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence 57899999977532 5778888777776542 27999999999985
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-16 Score=142.60 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=106.5
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcC----------------CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC
Q 021685 9 REWMGIQQFPPATQTKLLELLGKLKQEN----------------VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS 72 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~----------------~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~ 72 (309)
+..+|++..-..++.+|.++.+.+.... ....+|+++|.||||||||+|+|+|.. ..++++++
T Consensus 26 ~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pf 104 (376)
T 4a9a_A 26 QKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEF 104 (376)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCC
Confidence 5568888888888998888877764321 113589999999999999999999987 47789999
Q ss_pred CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHH
Q 021685 73 EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 148 (309)
Q Consensus 73 ~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~ 148 (309)
+|.++......+.+.++.++||||+.+...... ++++.+ ..+|++++|++... . ..+.+.+..-...
T Consensus 105 tT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i------~~ad~il~vvD~~~--p-~~~~~~i~~EL~~ 175 (376)
T 4a9a_A 105 TTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA------RTCNLLFIILDVNK--P-LHHKQIIEKELEG 175 (376)
T ss_dssp SCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH------HHCSEEEEEEETTS--H-HHHHHHHHHHHHH
T ss_pred ceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH------HhcCccccccccCc--c-HHHHHHHHHHHHH
Confidence 999999999999999999999999976533222 333333 47899999966532 1 2233444332333
Q ss_pred hCcc-ccCcEEEEEecccC
Q 021685 149 FGEQ-IWKRALIVLTHAQL 166 (309)
Q Consensus 149 ~g~~-~~~~~iiV~tk~D~ 166 (309)
++.. ..+|.++++||+|.
T Consensus 176 ~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 176 VGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp TTEEETCCCCCEEEEECSS
T ss_pred hhHhhccCChhhhhhHhhh
Confidence 3422 23688999999985
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=131.18 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=82.7
Q ss_pred HHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHH
Q 021685 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 30 ~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~ 107 (309)
..+.......++|+++|.+|+|||||+|++++... .....+++..........++.. +.+|||||..+......
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-- 221 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-- 221 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG--
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH--
Confidence 33333345679999999999999999999997653 3334445555445555666665 55999999854332221
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+ ...+|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 222 -----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 222 -----LS--YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp -----GG--CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred -----Hh--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 11 2689999999887542 222222346666665543 379999999999853
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=124.50 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=75.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.... .....+..........+++ ..+.||||||..+...... .+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 96 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS 96 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hh
Confidence 35799999999999999999999987532 2222222222223334443 5789999999754322211 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..++|++++|++++.. ++......++..+.+... ..|+++|+||+|+.
T Consensus 97 --~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 97 --YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 2689999999887642 122222456666665532 26999999999985
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-14 Score=119.09 Aligned_cols=114 Identities=17% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
....+||+++|.+|+|||||+|++++..... ... .|.........+++. .+.||||||..+.. .+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~-- 83 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA-- 83 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcC-CCcceEEEEEEECCEEEEEEEEECCCChhhh--------ee--
Confidence 3467999999999999999999999876422 111 233334445566764 56789999984321 22
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++...-...-..++..+....+ ....|+++|+||+|+.
T Consensus 84 ----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 84 ----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred ----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 368999999888642211111345555554422 1237999999999984
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=120.53 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=76.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCC-CCCcHHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEG-GYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~-~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|||||||+|++++......+..++++.+.......++|. .+.+|||+|.... ...... +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~-------~ 77 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDH-------C 77 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGG-------H
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHh-------h
Confidence 46999999999999999999999754333343344444444555566766 4678999997531 111111 1
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
. ..+|++++|++++.. ++.. -..+...+.+.... ...|+++|+||+|+........
T Consensus 78 ~--~~~~~~i~v~dv~~~~s~~~-~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~ 134 (192)
T 2cjw_A 78 M--QVGDAYLIVYSITDRASFEK-ASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSV 134 (192)
T ss_dssp H--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCH
T ss_pred c--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccH
Confidence 1 357999999888643 2322 23455555544221 1268999999999864333333
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=123.67 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEE--e-ee--CCeEEEEEeCCCCCCCCCCcH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVS--R-SR--AGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~--~-~~--~g~~l~liDTPG~~~~~~~~~ 105 (309)
..+||+++|.+|+|||||+|.+.+......... ...|....... . .. .+..+.||||||..+...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 469999999999999999999987643221110 00011111111 1 12 234789999999854321
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHH----HHHHHhCccccCcEEEEEecccCCC
Q 021685 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITR----AITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~----~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.. ..++ .++|++++|++++.. ....+...+. ++.+........|+++|+||+|+.+
T Consensus 90 ~~----~~~~--~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 90 SR----KLIL--RGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp HH----HHHT--TTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HH----HHHH--hcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 11 1122 689999999887632 1122223333 3332211123379999999999853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=124.56 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|++++... .....++...........++ ..+.||||||..+...... .+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 95 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LC 95 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HH
Confidence 4579999999999999999999998763 22222332222333333433 5789999999854332221 12
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++... +......++..+..... ..|+++|+||+|+.+
T Consensus 96 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 96 Y--SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp C--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred c--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2 5899999998886422 22223456777766542 269999999999863
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-15 Score=133.64 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~ 115 (309)
..+||+++|.+|+|||||+|++++.....++..+++|.........+ ++..+.||||||..+. .+.+.. ....++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 35899999999999999999999885445566677777766666554 5679999999998422 111111 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.......-..+.+.+.+........|+++|+||+|+.+
T Consensus 79 --~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 79 --QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp --TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 589999999887642111111233333433321112279999999999863
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=135.01 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCC----CCCcHHHHHHHHHhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEG----GYVNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~----~~~~~~~~~~i~~~~ 115 (309)
+|+++|.+|||||||+|+|++... .+++.+.+|..+....+.+.+ ..+.|+||||+.+. ......+++.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i---- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH----
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH----
Confidence 688999999999999999998764 456777778777766666665 79999999997542 12223443333
Q ss_pred hcCCCcEEEEEEeCCc---cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~---~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++++. .........++..+.........+|+++|+||+|+.
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 46899999988753 111122234556665542222347999999999985
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=127.79 Aligned_cols=125 Identities=21% Similarity=0.152 Sum_probs=74.9
Q ss_pred ceE-EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHhhh
Q 021685 39 TLT-ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~-I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~-~~~~~~i~~~~~ 116 (309)
.++ |+++|.+|+|||||+|+|+|... .+++.+++|.++....+.++|..+.++||||+......+ -+.+..+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~-- 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE-- 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH--
Confidence 455 99999999999999999999874 566677888888777888899999999999985421111 0112222222
Q ss_pred cCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|+++.... .......+.+.+.. ++.. ..|+++|+||+|+.+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGCC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCCC
Confidence 25889999997764311 11111122333333 3311 268999999999863
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-14 Score=126.24 Aligned_cols=125 Identities=20% Similarity=0.306 Sum_probs=73.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----ccCCCC----------------------CCCe--------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQS----------------------EGPR-------------- 76 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~~~~----------------------~t~~-------------- 76 (309)
..++|+|+|.+|+|||||+|+|+|..... ++..++ +|.+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999987542 222221 1111
Q ss_pred ---------eEEEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEE-EEEeCCccccChhHH
Q 021685 77 ---------PVMVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLL-YVDRLDVYRVDNLDK 139 (309)
Q Consensus 77 ---------~~~~~~~~-~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il-~v~~~d~~~~~~~d~ 139 (309)
........ .+..+.||||||+.+... .. ......+..++ ..++.++ +|++.+. .++..+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence 00001111 136899999999975321 11 12333334444 3556554 6766543 3444443
Q ss_pred -HHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 140 -QITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 140 -~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+++.+.. ...|+++|+||+|+.++.
T Consensus 182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 182 LKIAKEVDP-----QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCT-----TCSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCC-----CCCeEEEEEEccccCCCC
Confidence 34444432 127999999999997543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=133.58 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRA 85 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~------------------------------~~~~~~~~t~~~~~~~~~~~ 85 (309)
....++|+++|.+|+|||||+|+|++.... ......+.|.+.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 346799999999999999999999865211 11112355666666667778
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEE
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALI 159 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~ii 159 (309)
+..+.||||||+.+ ....... .+ ..+|++|+|++++... +.....+.+..+.. .+. +++|+
T Consensus 110 ~~~~~iiDTPG~~~---f~~~~~~----~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRD---FVPNAIM----GI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLII 176 (483)
T ss_dssp SCEEEEECCCCCGG---GHHHHHH----HH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEE
T ss_pred CceEEEEECCCcHH---HHHHHHH----hh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEE
Confidence 88999999999943 2222222 22 6899999998875421 22344444433333 332 57999
Q ss_pred EEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 160 VLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 160 V~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
|+||+|+.+.+...+++. .+.+.+++.... +. ...+|++.+|+.
T Consensus 177 viNK~Dl~~~~~~~~~~i----~~~~~~~l~~~g-~~-----~~~~~~i~iSA~ 220 (483)
T 3p26_A 177 AMNKMDNVDWSQQRFEEI----KSKLLPYLVDIG-FF-----EDNINWVPISGF 220 (483)
T ss_dssp EEECGGGGTTCHHHHHHH----HHHHHHHHHHHT-CC-----GGGEEEEECCSS
T ss_pred EEECcCcccchHHHHHHH----HHHHHHHHHHcC-CC-----cccceEEEEeee
Confidence 999999864322222222 234444443221 11 113688888774
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=132.51 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~ 110 (309)
..+++|+++|.+++|||||+|+|++... ......++.|.+.....+.+++..+.||||||.. .+...
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~ 89 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRA 89 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHH
Confidence 3469999999999999999999998761 1122233444444334455688899999999972 22222
Q ss_pred HHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhc
Q 021685 111 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (309)
+...+ ..+|++|+|++++. .......+.+..+.. .+ .|.++|+||+|+.++ +..+...+.+++++.
T Consensus 90 ~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~------~~~~~~~~~l~~~l~ 155 (482)
T 1wb1_A 90 VVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT------EEIKRTEMIMKSILQ 155 (482)
T ss_dssp HHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH------HHHHHHHHHHHHHHH
T ss_pred HHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc------hhHHHHHHHHHHHHh
Confidence 32222 68999999987753 355666666655543 33 577999999998631 111222244555543
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
....+. .+|++++|+. ++.+ +.+|++.+...+
T Consensus 156 ~~~~~~-------~~~ii~vSA~----~g~g-----------I~~L~~~L~~~i 187 (482)
T 1wb1_A 156 STHNLK-------NSSIIPISAK----TGFG-----------VDELKNLIITTL 187 (482)
T ss_dssp HSSSGG-------GCCEEECCTT----TCTT-----------HHHHHHHHHHHH
T ss_pred hhcccc-------cceEEEEECc----CCCC-----------HHHHHHHHHHhh
Confidence 321111 2688888763 3332 677877776654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-14 Score=130.63 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC---------CeeEEE----------EeeeCCeEEEEEeCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVMV----------SRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t---------~~~~~~----------~~~~~g~~l~liDTPG~ 97 (309)
...++|+++|.+|+|||||+|+|++............+ ...... ........+.||||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 35799999999999999999999985321111000000 000000 00112268999999997
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
.+ ...... ..+ ..+|++++|++.+.........+.+..+... +. +|+++|+||+|+.+. ++.
T Consensus 86 ~~---~~~~~~----~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~-----~~~ 147 (403)
T 3sjy_A 86 EV---LMATML----SGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK-----EEA 147 (403)
T ss_dssp GG---GHHHHH----HHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-----HHH
T ss_pred HH---HHHHHH----HHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch-----HHH
Confidence 32 222222 222 5899999998876422245566666555443 32 589999999998632 211
Q ss_pred HHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 178 CSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 178 ~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....+.+++++... ....+|++.+|+. ++.+ +++|++.+...++..
T Consensus 148 -~~~~~~i~~~l~~~--------~~~~~~ii~vSA~----~g~g-----------i~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 148 -LSQYRQIKQFTKGT--------WAENVPIIPVSAL----HKIN-----------IDSLIEGIEEYIKTP 193 (403)
T ss_dssp -HHHHHHHHHHHTTS--------TTTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSCCC
T ss_pred -HHHHHHHHHHHHhh--------CCCCCEEEEEECC----CCcC-----------hHHHHHHHHHhCCCC
Confidence 11123444444332 1124788888774 3333 788998888766543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=117.48 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=66.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-CCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~-----~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
.++|+++|.+|+|||||+|++++......+.. +..+.......... ....+.+|||||..+......
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP------- 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH-------
Confidence 48999999999999999999998632222222 22222222222222 345899999999743222211
Q ss_pred HhhhcCCCcEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 113 RFLLNKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++ .++|++++|++++.. ++ ..-..++..+..... ..|+++|+||+|+.
T Consensus 75 ~~~--~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 75 HFM--TQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp HHH--HHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred HHc--cCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 112 367999999887542 12 122345555544322 26899999999985
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-16 Score=130.92 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~ 99 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY 99 (204)
Confidence 569999999999999999999997653 22222333333333333444 3566999999854332211 111
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 100 --~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 100 --PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 578999999776432 243333356666655433 279999999999864
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=128.31 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=92.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++....... ..++.|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 35699999999999999999999765321111 113445555556667788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccC------hhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~------~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||..+. ...+...+ ..+|++|+|++++..-+. .+..+.+..+.. .+. +++|+|
T Consensus 95 ~~~~iiDTPGh~~f-------~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-------VPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVL 161 (439)
T ss_pred eEEEEEECCChHHH-------HHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEE
Confidence 89999999998432 22222222 579999999877542111 344444444433 231 349999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
+||+|+...+ .+ ++..+...+.+.+++... ++.. ...+|++++|+.
T Consensus 162 iNK~Dl~~~~-~~-~~~~~~i~~~~~~~l~~~-g~~~----~~~~~~i~iSA~ 207 (439)
T 3j2k_7 162 INKMDDPTVN-WS-NERYEECKEKLVPFLKKV-GFNP----KKDIHFMPCSGL 207 (439)
T ss_pred eecCCCcccc-hH-HHHHHHHHHHHHHHHHHh-cccc----cCCeeEEEeecc
Confidence 9999985322 11 111222234444444322 1111 013688888774
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=132.37 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE------Eeee----CCeEEEEEeCCCCCCCCCCcH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------SRSR----AGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------~~~~----~g~~l~liDTPG~~~~~~~~~ 105 (309)
....+||+++|.+|||||||+|++++.... ....+..+....+. .... .+..+.+|||||.........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 345799999999999999999999987632 11112222222221 1111 257899999999765544433
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.+ + .++|++++|+++. .. +....++..+....+. .|+++|+||+|+.+..+.+.
T Consensus 117 ~~---l------~~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 117 FF---M------TRSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp HH---H------HSSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCCH
T ss_pred HH---c------cCCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccCH
Confidence 22 2 3689999996654 33 4456677777776432 79999999999975544443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=127.54 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE--------------------------------------
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-------------------------------------- 81 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~-------------------------------------- 81 (309)
.+|+|+|.+|+|||||+|+|+|.+....+. ..+|+.+....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 499999999999999999999976533322 12222221111
Q ss_pred ----------------e-eeCCeEEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021685 82 ----------------R-SRAGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 82 ----------------~-~~~g~~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
. ...+..+.||||||+.+... ........+..++ .++|++++|++...... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~--~~ 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDL--AT 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCG--GG
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCc--CC
Confidence 1 11234689999999976421 1122333344444 58999988854322121 11
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..++..+...... ..++++|+||+|+.++..
T Consensus 190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 190 SDAIKISREVDPS--GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp CHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence 2233333332222 268999999999975544
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=127.67 Aligned_cols=126 Identities=20% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE-------------------------------------
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------------------------------------- 79 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~------------------------------------- 79 (309)
....+|+|+|.+|+|||||+|+|+|.+...... ..+|..+..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCS-SSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCC-CcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999987542211 011221210
Q ss_pred --------------EEee-eCCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021685 80 --------------VSRS-RAGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 80 --------------~~~~-~~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
.... .++..+.||||||+..... .. +.+...+..++. ...+++|+|++.+. .+...+
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~ 185 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD 185 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhH
Confidence 0111 1246799999999975321 11 233334444443 35566676755442 344444
Q ss_pred H-HHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 139 K-QITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 139 ~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
. .+++.+.. . ..++++|+||+|+.++.
T Consensus 186 ~~~i~~~~~~---~--~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 186 ALKVAKEVDP---Q--GQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHCT---T--CTTEEEEEECGGGSCTT
T ss_pred HHHHHHHhCc---C--CCceEEEeccccccCcc
Confidence 3 24433322 2 27999999999997543
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=129.18 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=106.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC---C----ccc---cc------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE---K----AVT---VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~---~----~~~---~~------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...++|+++|.+|+|||||+|+|++. . .+. .. ...+.|.......+...+..+.||||||+.+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999973 1 000 00 02344555555556667789999999998542
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
.... ...+ ..+|++|+|++++. .......+++..+... + .| +++|+||+|+.+ + ++..+
T Consensus 89 ---~~~~----~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~-~----~~~~~ 148 (405)
T 2c78_A 89 ---IKNM----ITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMVD-D----PELLD 148 (405)
T ss_dssp ---HHHH----HHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCC-C----HHHHH
T ss_pred ---HHHH----HHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECccccC-c----HHHHH
Confidence 1222 2222 58999999988754 3456666666555442 3 46 899999999863 1 11121
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHhc
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVLN 246 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~~ 246 (309)
...+.+++++.... +. ...+|++++|+..............+...+| +..|++.+...++.
T Consensus 149 ~~~~~~~~~l~~~~-~~-----~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 149 LVEMEVRDLLNQYE-FP-----GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHHHHHHHHTT-SC-----TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhc-cc-----ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 11234444443221 11 1236888887632110000000011112346 67788888776653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=109.41 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+|+|+|..... ...+..+.......+.++|. .+.+|||||..........+ .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~-------~- 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY-------Y- 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH-------H-
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH-------H-
Confidence 5899999999999999999999876422 22233344555556667775 56789999975433322211 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|+++........-..++..+...... ..++++|+||+|+.......
T Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~ 129 (199)
T 2f9l_A 76 -RGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVP 129 (199)
T ss_dssp -TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcC
Confidence 5789999998775321111122345555443222 26899999999986443333
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=115.37 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+++|.+|+|||||+|+|++....... .+..+. ....+.+..+.+|||||+.+.. ......++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~- 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPL-SAADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA- 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----CCSSCE-EETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----eecCce-EEEEeeCceEEEEECCCcHHHH---HHHHHHHHhcc-
Confidence 35699999999999999999999987632110 011111 1222356689999999994432 22222222111
Q ss_pred cCCCcEEEEEEeCC-cc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCCCC
Q 021685 117 NKTIDVLLYVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d-~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++.. .. .+... ..++..+..... .....|+++|+||+|+.+..
T Consensus 81 -~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 81 -KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp -GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred -ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 3489999998876 21 23333 334444333211 01227999999999996544
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-13 Score=126.62 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=75.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCCCeeEEEEeeeC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRA 85 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~ 85 (309)
..++|+++|.+|+|||||+|+|++....... ..+ +.|.+.....+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4599999999999999999999865421111 011 22333333344557
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||..+. .... ...+ ..+|++|+|++++. .......+.+..+.. .+. +++++|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f---~~~~----~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~-~~~---~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQY---TRNM----ATGA--STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGG---HHHH----HHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTT
T ss_pred CceEEEEECCChHHH---HHHH----HHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEEcCc
Confidence 789999999998432 1222 2222 68999999988754 345556666654443 332 46999999999
Q ss_pred CCC
Q 021685 166 LSL 168 (309)
Q Consensus 166 ~~~ 168 (309)
+.+
T Consensus 169 l~~ 171 (434)
T 1zun_B 169 LNG 171 (434)
T ss_dssp TTT
T ss_pred CCc
Confidence 863
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=131.73 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
...+|+|+|.+|+|||||+|+|++..... +.+ ..+.|.......+.+.+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 35799999999999999999997221110 111 133455555566778899999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+.. ......+ ..+|++|+|++... .....+..++..+... + .|+++|+||+|+.
T Consensus 92 ~~df~---~~~~~~l------~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFT---EDTYRTL------TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-H----TPIMTFINKMDRD 147 (528)
T ss_dssp STTCC---HHHHHGG------GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-T----CCEEEEEECTTSC
T ss_pred chhHH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence 96543 2322222 58899999977654 4566666666555433 2 6999999999985
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=134.22 Aligned_cols=123 Identities=16% Similarity=0.271 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee---------------------------------
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS--------------------------------- 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~--------------------------------- 83 (309)
.++|+|+|.+|+|||||+|+|+|.... .++..+.++.........
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 479999999999999999999998764 355555554321111100
Q ss_pred ---eCC---eEEEEEeCCCCCCCCC--CcH--HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccc
Q 021685 84 ---RAG---FTLNIVDTPGLIEGGY--VNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153 (309)
Q Consensus 84 ---~~g---~~l~liDTPG~~~~~~--~~~--~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~ 153 (309)
+.+ ..+.||||||+.+... ... .+......++ ..+|++|+|++.+...+...+..+++.+...
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----- 217 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH----- 217 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----
Confidence 000 3589999999975321 110 0112222233 4789999998775434566777777666432
Q ss_pred cCcEEEEEecccCCC
Q 021685 154 WKRALIVLTHAQLSL 168 (309)
Q Consensus 154 ~~~~iiV~tk~D~~~ 168 (309)
..++++|+||+|+.+
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 268999999999863
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=135.02 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++........ .++.|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999999774322211 13556655555666788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||+.+ +...+... ...+|++|+|++++... ......+.+..+. ..+. +++|+|
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi---~~iIVV 311 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGI---HNLIIA 311 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTC---CEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCC---CeEEEE
Confidence 8999999999843 11112112 26899999997775311 2234444443333 2232 469999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcc
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 224 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~ 224 (309)
+||+|+.+.+...+++. .+.+..++.... +. ...+|++++|+. ++.+...
T Consensus 312 vNKiDl~~~~~~~~~ei----~~~l~~~l~~~g-~~-----~~~~~~i~vSA~----tG~gI~e 361 (611)
T 3izq_1 312 MNKMDNVDWSQQRFEEI----KSKLLPYLVDIG-FF-----EDNINWVPISGF----SGEGVYK 361 (611)
T ss_dssp EECTTTTTTCHHHHHHH----HHHHHHHHHHHT-CC-----GGGCEEEECCTT----TCTTTSS
T ss_pred EecccccchhHHHHHHH----HHHHHHHHHhhc-cc-----ccCccEEeeecc----cCCCccc
Confidence 99999864222122222 234444443221 11 123688888774 4544443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=129.91 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=45.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTP 95 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~l~liDTP 95 (309)
++|+++|.+|+|||||+|+|++.. +.+++.+++|..+...... ++ +.++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 5777888888766544321 12 2579999999
Q ss_pred CCCCCCCCcHHHHHHHHHhh-hcCCCcEEEEEEeCCc
Q 021685 96 GLIEGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV 131 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~-~~~~~d~il~v~~~d~ 131 (309)
|+.+.....+. ...+++ ..+.+|++++|+++..
T Consensus 80 G~~~~a~~~~~---l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence 99653221111 112232 2368999999988754
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=119.99 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=99.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------g~~l~li 92 (309)
..++|+++|.+++|||||+|+|+|..... ....++.|.........+ . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 46999999999999999999999764221 112233444332211111 1 1679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
||||.. .+...+...+ ..+|++|+|++++......+..+.+..+... +. +++++|+||+|+.+.+
T Consensus 89 DtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~~-- 153 (410)
T 1kk1_A 89 DAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDKE-- 153 (410)
T ss_dssp ECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCHH--
T ss_pred ECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCHH--
Confidence 999972 2222222222 4779999998876421145555555554433 32 5899999999986321
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+ .....+.+++++.... ...+|++.+|+. ++.+ ++.|++.+...++.
T Consensus 154 ---~-~~~~~~~i~~~l~~~~--------~~~~~~i~vSA~----~g~g-----------i~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 154 ---K-ALENYRQIKEFIEGTV--------AENAPIIPISAL----HGAN-----------IDVLVKAIEDFIPT 200 (410)
T ss_dssp ---H-HHHHHHHHHHHHTTST--------TTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSCC
T ss_pred ---H-HHHHHHHHHHHHHhcC--------cCCCeEEEeeCC----CCCC-----------HHHHHHHHHHhCCC
Confidence 1 1111244555554321 123788888763 3333 78888888876653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-13 Score=133.28 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=82.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE-----------------------------------
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS----------------------------------- 81 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~----------------------------------- 81 (309)
....+|+|+|.+++|||||+|+|+|.+..+.+.. .+|+.+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3457999999999999999999999876444432 2333332221
Q ss_pred ----------------eee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021685 82 ----------------RSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 82 ----------------~~~-~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
+.. +...+.||||||+..... .. ....+.+..++. ..+|++|+|++... .+...|
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhH
Confidence 111 233588999999986321 11 233344455554 68899999966543 345556
Q ss_pred H-HHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 139 K-QITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 139 ~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
. .+++.+... ..|+++|+||+|+.++..
T Consensus 206 ~l~ll~~L~~~-----g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 206 ALKIAKEVDPQ-----GQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHCTT-----CSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhc-----CCCEEEEEeCcccCCcch
Confidence 5 566555432 279999999999975543
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=130.89 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc-cc-----------------------ccC------CCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-VT-----------------------VST------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~-~~-----------------------~~~------~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+|+|||||+|+|++... .. +.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 469999999999999999999986410 00 000 134454444445666788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc----cC--hhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~----~~--~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
.+.||||||..+ +...+...+ ..+|++|+|++++... +. ....+.+..+. ..+. +++|+|+
T Consensus 86 ~~~iiDtPGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~v---~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRD-------FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGV---RQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTT-------HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTC---CEEEEEE
T ss_pred eEEEEECCCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcCC---CeEEEEE
Confidence 999999999742 222222222 6899999997775311 11 13344433332 2231 3599999
Q ss_pred ecccCC
Q 021685 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|+.
T Consensus 153 NK~Dl~ 158 (458)
T 1f60_A 153 NKMDSV 158 (458)
T ss_dssp ECGGGG
T ss_pred Eccccc
Confidence 999986
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-12 Score=105.23 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+|.+++.... ....+..+.......+.++|.. +.+|||||..........+ .
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~----- 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY---Y----- 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHH---H-----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHH---h-----
Confidence 589999999999999999999987642 2223333444455566677765 4569999986544333221 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++++++|+++........-..++..+.+... ...++++|+||+|+...
T Consensus 100 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 100 -RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence 578899999776532110111234444444322 22689999999998543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=122.25 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=101.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc------cc----cc-----CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKA------VT----VS-----TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~------~~----~~-----~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
.+++|+++|.+|+|||||+|+|++... +. .. ...+.|.......+...+..+.||||||..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH---
Confidence 468999999999999999999997410 00 00 0122233333334455678999999999832
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHhh
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+...+...+ ..+|++|+|++++. ....+..+.+..+.. .+ .| +++|+||+|+.. + ++..+..
T Consensus 79 ----f~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~-~----~~~~~~~ 141 (397)
T 1d2e_A 79 ----YVKNMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQ-D----SEMVELV 141 (397)
T ss_dssp ----HHHHHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCS-C----HHHHHHH
T ss_pred ----HHHHHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCC-C----HHHHHHH
Confidence 222222222 68999999988754 345555666654443 23 45 789999999863 1 1122212
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc----hHHHHHHHHHHHhc
Q 021685 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW----IPNLVKTITEVVLN 246 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w----~~~L~~~i~~~~~~ 246 (309)
.+.+++++... .+. ...+|++++|+. ++.+. ....| +..|++.+...++.
T Consensus 142 ~~~~~~~l~~~-~~~-----~~~~~~i~~SA~----~g~n~-----~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 142 ELEIRELLTEF-GYK-----GEETPIIVGSAL----CALEQ-----RDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHHHT-TSC-----TTTSCEEECCHH----HHHTT-----CCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHc-CCC-----cccCcEEEeehh----hcccc-----cCCCccCCcHHHHHHHHHHhCCC
Confidence 23444554332 111 123788888774 22211 11235 66788888776653
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-12 Score=117.73 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=94.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSR---------------A--------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~l~li 92 (309)
..++|+++|..++|||||+|+|+|....... ..++.|.......... . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4699999999999999999999976422111 1233344322111111 1 1679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
||||.. .+...+.+ ....+|++|+|++++.........+.+..+. ..+. +|+++|+||+|+.+.+..
T Consensus 87 DtPGh~-------~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 87 DSPGHE-------TLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp ECSSHH-------HHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSCTTTT
T ss_pred ECCCHH-------HHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCCHHHH
Confidence 999962 22222211 1257899999988764212455555555443 3332 589999999999754321
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
.+. .+.+++++.... ...+|++.+|+. ++.+ +++|++.+...++.
T Consensus 154 --~~~----~~~i~~~l~~~~--------~~~~~~i~vSA~----~g~g-----------i~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 --EEN----YEQIKEFVKGTI--------AENAPIIPISAH----HEAN-----------IDVLLKAIQDFIPT 198 (408)
T ss_dssp --TTH----HHHHHHHHTTST--------TTTCCEEEC----------C-----------HHHHHHHHHHHSCC
T ss_pred --HHH----HHHHHHHHhhcC--------CCCCeEEEeeCC----CCCC-----------HHHHHHHHHHhCCC
Confidence 111 133444444320 123688888763 3332 78888888876553
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-12 Score=118.68 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=86.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+++|||||+|+|+ ..+.|.+.....+...+..+.||||||..+. .......+ ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHC
Confidence 99999999999999999999 1223344445556677889999999999543 22222223 489
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE-EEEEe-cccCCCCCCCCHHHHHHhhhHHHHHhhccccccccc
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKK 198 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~-iiV~t-k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 198 (309)
|++++|++ +. ....+..+.+..+.. .+ .|. ++|+| |+|+ ++ ++.+...+.+++++....
T Consensus 85 D~ailVvd-~~-g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl-~~------~~~~~~~~~i~~~l~~~~----- 145 (370)
T 2elf_A 85 DIAVLCIP-PQ-GLDAHTGECIIALDL-LG----FKHGIIALTRSDST-HM------HAIDELKAKLKVITSGTV----- 145 (370)
T ss_dssp SEEEEEEC-TT-CCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS-CH------HHHHHHHHHHHHHTTTST-----
T ss_pred CEEEEEEc-CC-CCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC-CH------HHHHHHHHHHHHHHHhcC-----
Confidence 99999977 43 455566666655543 33 455 88999 9998 32 122222345555554321
Q ss_pred ccccCCCcEEE--eccc
Q 021685 199 DIQGSFVPVVL--VENS 213 (309)
Q Consensus 199 ~~~~~~ipv~~--v~~~ 213 (309)
...+|+++ +|+.
T Consensus 146 ---~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 146 ---LQDWECISLNTNKS 159 (370)
T ss_dssp ---TTTCEEEECCCCTT
T ss_pred ---CCceEEEecccccc
Confidence 12368888 7764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=137.60 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=80.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.+|+++|.+|+|||||+|+|.+.... ....++.|.+........ ++..+.||||||..++...... +
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~-------~-- 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR-------G-- 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS-------S--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH-------H--
Confidence 4689999999999999999999987642 334455555544444444 5678999999998655433221 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++. .......+.+..+... + .|+++|+||+|+.+
T Consensus 73 ~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~-~----vPiIVViNKiDl~~ 118 (537)
T 3izy_P 73 TQVTDIVILVVAADD-GVMKQTVESIQHAKDA-H----VPIVLAINKCDKAE 118 (537)
T ss_dssp SBSBSSCEEECBSSS-CCCHHHHHHHHHHHTT-T----CCEEECCBSGGGTT
T ss_pred HccCCEEEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEecccccc
Confidence 157899999977654 4556666666555432 2 68999999999864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.9e-12 Score=105.38 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
...+|+++|++|+|||||+|+|+|.. ...+.+.++++..... ..+++ .+.++||||+.+..... +.+...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999976 3334455555554332 22333 68899999986432111 122222333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++++++.. ..+..+.++...+.. .+ .|+++|.||+|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~ 150 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVD-SN----IAVLVLLTKADKL 150 (210)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHH-TT----CCEEEEEECGGGS
T ss_pred HHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEecccCC
Confidence 332 257899999977753 234444445544432 22 6889999999975
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=124.16 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+|+|||||+|+|++...... ....+.|.......+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 569999999999999999999986411000 00234454444445566788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
.+.||||||..+. ...+...+ ..+|++++|++++... ...+..+.+..+.. .+. +++++|+
T Consensus 85 ~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEE
T ss_pred EEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEE
Confidence 9999999998542 11222222 6899999998876522 22233333333322 231 4699999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
||+|+.+.+ .+.+ ..+...+.+++++.... +. ...+|++.+++.
T Consensus 152 NK~Dl~~~~-~~~~-~~~~~~~~i~~~~~~~~-~~-----~~~~~~i~iSA~ 195 (435)
T 1jny_A 152 NKMDLTEPP-YDEK-RYKEIVDQVSKFMRSYG-FN-----TNKVRFVPVVAP 195 (435)
T ss_dssp ECGGGSSST-TCHH-HHHHHHHHHHHHHHHTT-CC-----CTTCEEEECBTT
T ss_pred EcccCCCcc-ccHH-HHHHHHHHHHHHHHHcC-CC-----cCCceEEEeecc
Confidence 999986432 1111 11222344555554321 11 113678888764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-14 Score=137.04 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++....... ..++.|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34689999999999999999999753211111 123445555555566677
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc----cc--ChhHHHHHHHHHHHhCccccCcEEEE
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RV--DNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~----~~--~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||+.+..... ...+ ..+|++|+|++++.. .+ .....+.+..+.. .|. +++|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~~---~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM---IAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEEC---CC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEE
T ss_pred eEEEEEECCChHHHHHHH---HHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence 899999999996532211 1111 478999999776532 23 4555555554443 332 359999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhh-cccccccccccccCCCcEEEeccc
Q 021685 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFV-SPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
+||+|+.+.+. + ......+.+.+++ ... ++. ...+|++++|+.
T Consensus 322 iNKiDl~~~~~---~-~~~~i~~el~~~l~~~~-g~~-----~~~~~ii~iSA~ 365 (592)
T 3mca_A 322 VNKLDLMSWSE---D-RFQEIKNIVSDFLIKMV-GFK-----TSNVHFVPISAI 365 (592)
T ss_dssp EECGGGGTTCH---H-HHHHHHHHHHHHHTTTS-CCC-----GGGEEEEEECSS
T ss_pred EeccccccccH---H-HHHHHHHHHHHHHHHhh-CCC-----ccceEEEEEecc
Confidence 99999864221 1 1222234455555 221 221 123688888874
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=123.16 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=74.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe--eEEEEee----------------eCCeEEEEEeCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRS----------------RAGFTLNIVDTPGLIE 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~----------------~~g~~l~liDTPG~~~ 99 (309)
.+.+|+++|.+|+|||||+|+|++...... ...+.|.. ....... +....+.||||||..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 468999999999999999999997643111 11122222 1121111 1122599999999976
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+...... . ...+|++++|++++. .+.....+.+..+... + .|+++|+||+|+.+
T Consensus 83 F~~~~~r-------~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKR-------G--GALADLAILIVDINE-GFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCS-------S--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HHHHHHH-------H--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 5443221 1 147899999988764 4556666666655442 2 69999999999853
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=124.20 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------cc----c-----cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VT----V-----STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~----~-----~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|.+|+|||||+|+|++... +. . ....+.|.......+...+..+.||||||..+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH--
Confidence 4569999999999999999999997410 00 0 01122333322334445678999999999842
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+...+... ...+|++|+|++++. ....+..+.+..+... + .| +|+|+||+|+.+. ++..+.
T Consensus 372 -----F~~~mi~g--as~AD~aILVVDAtd-Gv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv~d-----~e~le~ 433 (1289)
T 3avx_A 372 -----YVKNMITG--AAQMDGAILVVAATD-GPMPQTREHILLGRQV-G----VPYIIVFLNKCDMVDD-----EELLEL 433 (1289)
T ss_dssp -----HHHHHHHT--SCCCSEEEEEEETTT-CSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTCCC-----HHHHHH
T ss_pred -----HHHHHHHH--HhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHc-C----CCeEEEEEeecccccc-----hhhHHH
Confidence 22222222 268999999988764 3445666666555443 3 45 8999999998631 111111
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021685 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
..+.+++++.... +. ...+|++.+++. ++.+. ..+| +.+|++.+...++
T Consensus 434 i~eEi~elLk~~G-~~-----~~~vp~IpvSAk----tG~ng------~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 434 VEMEVRELLSQYD-FP-----GDDTPIVRGSAL----KALEG------DAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHHTT-SC-----TTTCCEEECCST----TTTTC------CHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc-cc-----ccceeEEEEEec----cCCCC------CccccccchhhHhHHhhhcC
Confidence 1234444443321 11 123788888774 22111 0124 5667777776554
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-11 Score=111.77 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=101.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~----~~~~~~~~i~~~~ 115 (309)
.|+|+|.+|+|||||+|+|++... .+...+.+|..+....+..++ ..+.++||||+.+... .....+..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~---- 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI---- 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH----
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH----
Confidence 579999999999999999999864 456666777777666666665 7899999999965311 222222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.+++++|++++++...+. .-..+.+.+......-..+|.++|+||+|+... +.. +.+++.+...
T Consensus 234 --era~~lL~vvDls~~~~~-~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~----~~l~~~l~~~--- 297 (416)
T 1udx_A 234 --ARTRVLLYVLDAADEPLK-TLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAV----KALADALARE--- 297 (416)
T ss_dssp --TSSSEEEEEEETTSCHHH-HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHH----HHHHHHHHTT---
T ss_pred --HHHHhhhEEeCCccCCHH-HHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHH----HHHHHHHHhc---
Confidence 589999999877511121 112233333332111123799999999997521 111 2333333321
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+++++++. ++.+ +.+|++.+...+...
T Consensus 298 --------g~~vi~iSA~----~g~g-----------i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 298 --------GLAVLPVSAL----TGAG-----------LPALKEALHALVRST 326 (416)
T ss_dssp --------TSCEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred --------CCeEEEEECC----CccC-----------HHHHHHHHHHHHHhc
Confidence 2578877763 3332 788888888777654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=113.75 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+||||||+++.+++.-..........|......... ...++.||||||..+.....-.. ..+. +++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~----~~yy--r~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDS----ERLF--KSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHH----HHHH--TTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhh----hhhc--cCC
Confidence 6899999999999999998865321111111122211111221 33689999999997653211001 1122 699
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+++++|++++.. +...-..+.+.+..........|+++|+||+|+.+
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 999999777643 33332233222322111111268999999999963
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=119.39 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+++|||||+|+|+...... +.+ ..+.|.......+..++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 56999999999999999999997421100 000 122333333334556788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc----cC--hhHHHHHHHHHHHhCccccCc-EEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKR-ALIV 160 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~----~~--~~d~~~l~~l~~~~g~~~~~~-~iiV 160 (309)
.+.||||||..+... . +...+ ..+|++|+|++++... +. ....+.+..+. ..| .| +|+|
T Consensus 122 ~~~iiDtPGh~~f~~---~----~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~----vp~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT---N----MINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG----INHLVVV 187 (467)
T ss_dssp EEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT----CSSEEEE
T ss_pred EEEEEECCCcHHHHH---H----HHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC----CCEEEEE
Confidence 999999999854321 1 11111 5899999998875421 11 23444443332 223 44 9999
Q ss_pred EecccCC
Q 021685 161 LTHAQLS 167 (309)
Q Consensus 161 ~tk~D~~ 167 (309)
+||+|+.
T Consensus 188 iNK~Dl~ 194 (467)
T 1r5b_A 188 INKMDEP 194 (467)
T ss_dssp EECTTST
T ss_pred EECccCC
Confidence 9999985
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=118.76 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=89.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIE 99 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~--------~~------~~~~t~~~~~~~~~~---~g--~~l~liDTPG~~~ 99 (309)
-.+|+++|.+|+|||||+|+|+....... .+ ..+.|.........+ +| ..++||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46999999999999999999985321110 00 112222222222323 22 5789999999955
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021685 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+ ..+....+ ..+|++|+|++.+. .........+...... + .|+++|+||+|+... +.++..
T Consensus 86 F---~~ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-~----ipiIvviNKiDl~~a---~~~~v~- 146 (600)
T 2ywe_A 86 F---SYEVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-D----LVIIPVINKIDLPSA---DVDRVK- 146 (600)
T ss_dssp G---HHHHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-T----CEEEEEEECTTSTTC---CHHHHH-
T ss_pred H---HHHHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-C----CCEEEEEeccCcccc---CHHHHH-
Confidence 3 22222233 47899999977654 3444554444333322 2 689999999998532 233221
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+.+.+. +. ..+++.+|+. ++.+ +.+|++.+...++..
T Consensus 147 ---~el~~~lg----~~-------~~~vi~vSAk----tg~G-----------I~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 147 ---KQIEEVLG----LD-------PEEAILASAK----EGIG-----------IEEILEAIVNRIPPP 185 (600)
T ss_dssp ---HHHHHTSC----CC-------GGGCEECBTT----TTBS-----------HHHHHHHHHHHSCCC
T ss_pred ---HHHHHhhC----CC-------cccEEEEEee----cCCC-----------chHHHHHHHHhcccc
Confidence 23333321 11 1246666553 3433 788998888877654
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-13 Score=126.53 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+.+|+++|.+++|||||+|+|.+... ..+..++.|.+...+.+.+++..+.||||||..++...... ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~---------~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR---------GA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS---------SS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH---------HH
Confidence 468999999999999999999997543 22333444544444455567788999999999665433211 11
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .......+.+..+... + .|+++++||+|+..
T Consensus 73 ~~aD~aILVVda~~-g~~~qT~e~l~~~~~~-~----vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADD-GVMPQTIEAIQHAKAA-Q----VPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTT-BSCTTTHHHHHHHHHT-T----CCEEEEEECSSSST
T ss_pred hhCCEEEEEeeccc-CccHHHHHHHHHHHhc-C----ceEEEEEEeccccc
Confidence 57899999988764 3444555555444332 2 68999999999853
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=122.40 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+|+|++..... +.+ ..+.|.........+++..+.||||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45899999999999999999999421110 111 1233333344556678899999999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+....+ ..+|++|+|++... ..+..+...+..+.+. + .|+++|+||+|+..
T Consensus 89 ---~~~~~~~l------~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 89 ---TVEVERSL------RVLDGAVTVLDAQS-GVEPQTETVWRQATTY-G----VPRIVFVNKMDKLG 141 (693)
T ss_dssp ---CHHHHHHH------HHCSEEEEEEETTT-BSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTT
T ss_pred ---HHHHHHHH------HHCCEEEEEECCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 33333334 36899999977653 4566666666665543 2 79999999999864
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=120.17 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
...+|+++|.+|+|||||+|+|++..... +.+ ..+.|.......+.+.+..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45899999999999999999999642111 000 112222223345667889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+.. .... +++ ..+|++|+|++... ........+++.+... ..|+++|+||+|+..
T Consensus 92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR-----DTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCC---HHHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT-----TCCEEEEEECTTSCC
T ss_pred ChhHH---HHHH----HHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc-----CCCEEEEEcCcCCcc
Confidence 96543 2222 222 58999999977653 3444444444433221 268999999999853
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=118.86 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=88.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccccc--------C------CCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS--------T------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIE 99 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~ 99 (309)
-.+|+|+|..|+|||||+++|+........ + ..+.|.........+. +..+.||||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999999863211110 0 1122333333334343 25799999999954
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021685 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+ ..+....+ ..+|++|+|++++. +........+...... + .|+++|+||+|+... +.++..
T Consensus 84 F---~~ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-~----ipiIvViNKiDl~~a---~~~~v~- 144 (599)
T 3cb4_D 84 F---SYEVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM-D----LEVVPVLNKIDLPAA---DPERVA- 144 (599)
T ss_dssp G---HHHHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT-T----CEEEEEEECTTSTTC---CHHHHH-
T ss_pred H---HHHHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-C----CCEEEeeeccCcccc---cHHHHH-
Confidence 3 22222233 36899999977654 3444444444333322 2 689999999998533 233222
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+.+.+. +. ..+++.+++. ++.+ +.+|++.+...++..
T Consensus 145 ---~ei~~~lg----~~-------~~~vi~vSAk----tg~G-----------I~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 145 ---EEIEDIVG----ID-------ATDAVRCSAK----TGVG-----------VQDVLERLVRDIPPP 183 (599)
T ss_dssp ---HHHHHHTC----CC-------CTTCEEECTT----TCTT-----------HHHHHHHHHHHSCCC
T ss_pred ---HHHHHHhC----CC-------cceEEEeecc----cCCC-----------chhHHHHHhhcCCCc
Confidence 23333332 11 1246666653 3333 788888888877653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=112.21 Aligned_cols=93 Identities=22% Similarity=0.353 Sum_probs=54.9
Q ss_pred ccccCCCChhhHHHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE
Q 021685 11 WMGIQQFPPATQTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~ 88 (309)
..|+..+...+.+.+.+..++.... ...+++|+++|.+|+|||||+|+|+|...+.+++.+++|+...... . +..
T Consensus 90 ~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~ 166 (282)
T 1puj_A 90 GQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKE 166 (282)
T ss_dssp CTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCC
Confidence 4455554444444443332222222 2357999999999999999999999998888888888887665332 2 447
Q ss_pred EEEEeCCCCCCCCCCcHH
Q 021685 89 LNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~ 106 (309)
+.++||||+......+++
T Consensus 167 ~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 167 LELLDTPGILWPKFEDEL 184 (282)
T ss_dssp EEEEECCCCCCSCCCCHH
T ss_pred EEEEECcCcCCCCCCCHH
Confidence 999999999877655543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-12 Score=116.25 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCCCCee-----------------EEE
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEGPRP-----------------VMV 80 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~t~~~-----------------~~~ 80 (309)
...+++..+........+|+++|.+|+|||||+|+|. |.++..+...++.+... ...
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~ 143 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAY 143 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEE
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCee
Confidence 3445566665555567999999999999999999996 33332222221111100 000
Q ss_pred E----------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021685 81 S----------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 81 ~----------------------~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
. ....+..+.||||||+... ....+ ..+|++++|++.... +..
T Consensus 144 i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------~~~~~------~~aD~vl~V~d~~~~---~~~ 208 (355)
T 3p32_A 144 IRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS------EVAVA------NMVDTFVLLTLARTG---DQL 208 (355)
T ss_dssp EECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------HHHHH------TTCSEEEEEEESSTT---CTT
T ss_pred EEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------HHHHH------HhCCEEEEEECCCCC---ccH
Confidence 0 1235678999999998431 11111 689999999765421 111
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021685 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
..+...+ ...|.++|+||+|+.+.. ..+.. ...+++.+.... .. ......|++.+++. +
T Consensus 209 ~~l~~~~-------~~~p~ivVlNK~Dl~~~~--~~~~~----~~~l~~~l~~~~-~~---~~~~~~~vi~iSA~----~ 267 (355)
T 3p32_A 209 QGIKKGV-------LELADIVVVNKADGEHHK--EARLA----ARELSAAIRLIY-PR---EALWRPPVLTMSAV----E 267 (355)
T ss_dssp TTCCTTS-------GGGCSEEEEECCCGGGHH--HHHHH----HHHHHHHHHHHS-TT---CCSCCCCEEEEBGG----G
T ss_pred HHHHHhH-------hhcCCEEEEECCCCcChh--HHHHH----HHHHHHHHhhcc-cc---ccCCCCceEEEEcC----C
Confidence 1111001 115899999999985211 11111 123333332110 00 00113688888773 4
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 219 NENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+.+ +++|++.+...+..
T Consensus 268 g~G-----------i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 268 GRG-----------LAELWDTVERHRQV 284 (355)
T ss_dssp TBS-----------HHHHHHHHHHHHHH
T ss_pred CCC-----------HHHHHHHHHHHHHH
Confidence 443 78888887776643
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-13 Score=122.78 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 021685 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~g~~l~liD 93 (309)
.....+.++++.+.... ...+|+++|.+|+|||||+|+|++.. ...++..+++|.....+.... .+.++|
T Consensus 142 ~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liD 217 (368)
T 3h2y_A 142 AKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYD 217 (368)
T ss_dssp TTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEE
T ss_pred CCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEe
Confidence 33344555555554322 23789999999999999999999863 334677888887766544322 389999
Q ss_pred CCCCCCCCCCcHH-HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 94 TPGLIEGGYVNYH-AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 94 TPG~~~~~~~~~~-~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
|||+.+.....+. ..+.+..+.....++.++|+++.+..-+ ......+..+. + ...|+++++||+|.....
T Consensus 218 tPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~-~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 218 TPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLF-FSGLARFDYVS---G--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp CCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEE-ETTTEEEEEEE---S--SSEEEEEEECTTSCEEEE
T ss_pred CCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEE-EcceEEEEEec---C--CCceEEEEecCccccccc
Confidence 9999876532221 1233444444578899999965532211 11111111111 1 126899999999986443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-13 Score=124.70 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..+.++++.+.... ...+|+++|.+|+|||||+|+|++. ....+++.+++|......... ..+.++||||+
T Consensus 147 ~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~ 222 (369)
T 3ec1_A 147 IGMAKVMEAINRYR-EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGI 222 (369)
T ss_dssp BTHHHHHHHHHHHH-TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSC
T ss_pred CCHHHHHHHHHhhc-ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCc
Confidence 33444555444321 2468999999999999999999987 455778888988876654432 24899999999
Q ss_pred CCCCCCcHHH-HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 98 IEGGYVNYHA-IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 98 ~~~~~~~~~~-~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+.....+.. .+.+..+.....+|+++|+++....-+. .....+..+. +. ..++++++||.|.....
T Consensus 223 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~l~~l~---~~--~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 223 INHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFF-GGLARLDYIK---GG--RRSFVCYMANELTVHRT 290 (369)
T ss_dssp CCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEE-TTTEEEEEEE---SS--SEEEEEEECTTSCEEEE
T ss_pred CcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEE-CCEEEEEEcc---CC--CceEEEEecCCcccccc
Confidence 8754322211 1223333445689999999665322111 1111111111 11 25899999999986443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.5e-12 Score=109.92 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCcc---ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~---~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++++.. ++... ..++..+.+.... ...|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 58999999888642 33222 3455555544211 126999999999984
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-11 Score=118.08 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----T------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+|+|+..... . +.+ ..+.|.........+.+..+.||||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3589999999999999999999832100 0 001 1223333334456677899999999999553
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.......+ ..+|++|+|++... .....+...+..+.+. + .|+++|+||+|+..
T Consensus 91 ---~~~~~~~l------~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 ---TIEVERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-K----VPRIAFANKMDKTG 143 (691)
T ss_dssp ---HHHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTT
T ss_pred ---HHHHHHHH------HHCCEEEEEEECCC-CcchhhHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 22333333 36899999977654 3555555555555432 2 79999999999863
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=109.78 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+|||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999996
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.8e-11 Score=120.12 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------------C
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------G 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------g 86 (309)
...+|+|+|.+|+|||||+|+|++........ ..+.|.........+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999999753222111 1112222222222222 5
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||..+.. .+....+ ..+|++|+|+++.. ..+..+...+..+... ..|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~---~~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS---SEVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSC---HHHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCc
Confidence 689999999996643 2333333 48999999987754 3455555544443322 2689999999998
Q ss_pred C
Q 021685 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=111.82 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~~~ 102 (309)
++|+++|.+|+|||||+|+|++.. +.+++.+++|..+......+.+ ..+.||||||+.+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 789999999999999999999987 4677778777776554444444 4799999999975421
Q ss_pred ----CcHHHHHHHHHhhhcCCCcEEEEEEeCCc
Q 021685 103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131 (309)
Q Consensus 103 ----~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (309)
...+++..+ +++|++++|++...
T Consensus 82 ~~~gl~~~fl~~i------r~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANI------RETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHH------HTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHH------HhcCeEEEEEecCC
Confidence 112233333 58999999988753
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-10 Score=110.83 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+++|++.... .+ .+ ..+.|...........+..+.||||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3478999999999999999999943211 00 00 1133444555566677889999999998542
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.......+ ..+|++++|+++.. .++.....+++.+... + .|+++|+||+|+.
T Consensus 88 ---~~~~~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ---VGEIRGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp ---HHHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred ---HHHHHHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 22333333 36899999977643 4666666666666543 2 6899999999985
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=113.40 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCC-------eEEEEEe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAG-------FTLNIVD 93 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----~------~~------~~~~t~~~~~~~~~~~g-------~~l~liD 93 (309)
...+|+|+|..|+|||||+++|+...... + .+ ..+.|.........+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 35899999999999999999997532100 0 00 11223333333445555 7899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 94 TPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|||..++. .+....+ ..+|++|+|++... .........++.+... + .|+++|+||+|+..
T Consensus 89 TPG~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-~----ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFT---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-K----VPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchH---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEeCCCccc
Confidence 99996532 2222333 47899999977653 3444444555444322 2 68999999999853
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-10 Score=102.70 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=67.8
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCCCCCC--------------------eeEEE
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQSEGP--------------------RPVMV 80 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~~~t~--------------------~~~~~ 80 (309)
.++..+.....+...|+++|.+|+|||||+|.|++ .++..++..+.++. .+...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~ 123 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP 123 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeec
Confidence 44444444444568999999999999999999973 33333332222211 01000
Q ss_pred E-------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHH
Q 021685 81 S-------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141 (309)
Q Consensus 81 ~-------------------~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~ 141 (309)
. ....+..+.||||||+.+.. .. +. ..+|++++|++.... . +.+.
T Consensus 124 ~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~~----~~-----~~aD~vl~Vvd~~~~--~--~~~~ 187 (341)
T 2p67_A 124 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---TE----VA-----RMVDCFISLQIAGGG--D--DLQG 187 (341)
T ss_dssp ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HH----HH-----TTCSEEEEEECC----------CC
T ss_pred CccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---HH----HH-----HhCCEEEEEEeCCcc--H--HHHH
Confidence 0 01457789999999995421 11 11 689999999665321 1 1111
Q ss_pred HHHHHHHhCccccCcEEEEEecccCC
Q 021685 142 TRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 142 l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ... ..|.++|+||+|+.
T Consensus 188 l~~--~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 188 IKK--GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp CCH--HHH----HHCSEEEECCCCTT
T ss_pred HHH--hhh----cccCEEEEECCCCC
Confidence 111 011 15789999999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=107.75 Aligned_cols=87 Identities=24% Similarity=0.271 Sum_probs=50.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~ 99 (309)
...++|+++|.+|+|||||+|+|++... .+++.+++|..+......+.+ ..+.+|||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3568999999999999999999999875 677788888777665555443 2599999999976
Q ss_pred CCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 100 GGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 100 ~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
..... ...+..+ +.+|++++|++..
T Consensus 99 ~as~~~glg~~~l~~i------r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHI------SACDGIFHLTRAF 127 (396)
T ss_dssp --------CCHHHHHH------HTSSSEEEEEEC-
T ss_pred ccchhhHHHHHHHHHH------HhcCeEEEEEecC
Confidence 43321 1333333 5899999997763
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=103.92 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=82.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc---------------cccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAV---------------TVST------FQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~---------------~~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
-=||+|+|..++|||||.-+|+-.... .+.+ ..+.|.......+.+++..++||||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 358999999999999999999721110 1111 1223334445667889999999999999
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
.|+. .+....+ +-+|.+|+|++... ++..+...+++...+. + .|.++++||+|.. ..++++.
T Consensus 111 vDF~---~Ev~raL------~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~---~ad~~~~ 172 (548)
T 3vqt_A 111 QDFS---EDTYRVL------TAVDSALVVIDAAK-GVEAQTRKLMDVCRMR-A----TPVMTFVNKMDRE---ALHPLDV 172 (548)
T ss_dssp GGCS---HHHHHHH------HSCSEEEEEEETTT-BSCHHHHHHHHHHHHT-T----CCEEEEEECTTSC---CCCHHHH
T ss_pred HHHH---HHHHHHH------HhcCceEEEeecCC-CcccccHHHHHHHHHh-C----CceEEEEecccch---hcchhHh
Confidence 6653 3444455 37899999976643 5777777777666554 2 7999999999974 3346655
Q ss_pred HH
Q 021685 178 CS 179 (309)
Q Consensus 178 ~~ 179 (309)
++
T Consensus 173 ~~ 174 (548)
T 3vqt_A 173 MA 174 (548)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=108.68 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=61.2
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-------eeCCeEEEEEeCCCCCCCCC--CcH
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY--VNY 105 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-------~~~g~~l~liDTPG~~~~~~--~~~ 105 (309)
......+|+|+|.+|+|||||+|+|+|..... +.+++|..++.... ...+..+.|+||||+.+... ...
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~ 111 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQN 111 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTT
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhH
Confidence 34456899999999999999999999987532 33333322222111 12567899999999987543 111
Q ss_pred HH-HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021685 106 HA-IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 106 ~~-~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.. +-.+...+ .++ +|++..+ .++..+...+..+.+
T Consensus 112 ~~~~fala~ll----ss~--lv~n~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 112 DSWIFALAVLL----SST--FVYNSIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHHHH----CSE--EEEEEES-CSSHHHHHTTHHHHT
T ss_pred HHHHHHHHHHh----cCe--EEEECCC-CccHHHHHHHHHHHH
Confidence 11 11122122 123 3333332 577888776666544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-10 Score=104.97 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~ 100 (309)
...+++++|.+|+|||||+|+|+|...+.+++.+++|..+......+.+ ..+.++||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4689999999999999999999998766788899999888777776665 46899999999764
Q ss_pred CC----CcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 101 GY----VNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 101 ~~----~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
.. ....++..+ ..+|++++|++..
T Consensus 99 ~s~~e~L~~~fl~~i------r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHV------RAVDAIYQVVRAF 126 (392)
T ss_dssp CCSSSSSCHHHHHHH------TTCSEEEEEEECC
T ss_pred CcHHHHHHHHHHHHH------HHHHHHHHHHhcc
Confidence 33 233444444 5899999997764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=91.79 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-09 Score=95.86 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+++.+.-.-.....++++|++|+|||||+|.|.|
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554334567899999999999999999983
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=103.32 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---------------------CCeEEEEEeCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~l~liDTPG~~ 98 (309)
++|+++|.+|+|||||+|+|++.. ..+++.+.+|..+......+ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 689999999999999999999875 35566666665544433322 24579999999997
Q ss_pred CCCC----CcHHHHHHHHHhhhcCCCcEEEEEEeCCc
Q 021685 99 EGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131 (309)
Q Consensus 99 ~~~~----~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (309)
+... ...+++..+ +.+|++++|++...
T Consensus 81 ~~a~~~~~lg~~fl~~i------r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHI------REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHH------HTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHH------HhCCEEEEEEECCC
Confidence 6532 233444444 48999999988753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-10 Score=99.76 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 22 QTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...+.++++.+...- ++++++|.+|+|||||+|+|+|.....+++.+++|........ +..+.||||||+.+..
T Consensus 85 ~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 85 EPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKN 158 (262)
T ss_dssp SCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCC
T ss_pred CcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCc
Confidence 344555555554422 7999999999999999999999987677778887776543322 3478999999998765
Q ss_pred C
Q 021685 102 Y 102 (309)
Q Consensus 102 ~ 102 (309)
.
T Consensus 159 ~ 159 (262)
T 3cnl_A 159 I 159 (262)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-08 Score=93.13 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
....++++|++|+|||||+|.|+|......+. ...++......... ....++++|+||++.....-++++ ..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L---~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL---EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHH---HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHH---HH
Confidence 45689999999999999999999953211111 11122222222211 112689999999964322222333 22
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+-. ...+.+++ + +..+....+..+...+... + +|+++|+||.|+.
T Consensus 144 ~~L-~~~~~~~~-l--S~G~~~kqrv~la~aL~~~-~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 MKF-YEYDFFII-I--SATRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD 188 (413)
T ss_dssp TTG-GGCSEEEE-E--ESSCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred cCC-CccCCeEE-e--CCCCccHHHHHHHHHHHhc-C----CCeEEEEecCccc
Confidence 211 23355554 3 3333556777777777663 2 6999999999863
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-09 Score=100.61 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCCC-C------------eeEEEE----------------e
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG-P------------RPVMVS----------------R 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~t-~------------~~~~~~----------------~ 82 (309)
.+..|+++|.+|+||||++|.|. |.++..++..+... . -+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999 77665544311100 0 011100 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEE
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVL 161 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~ 161 (309)
...+..+.||||||.... +......+........+|.+++|++... .. ......+.+.+. .+ .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~-g~--~~~~~a~~~~~~------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASI-GQ--ACEAQAKAFKDK------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTC-CT--THHHHHHHHHHH------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEeccc-cc--cHHHHHHHHHhh------cCceEEEE
Confidence 126778999999999642 2222232322211127899999966543 22 234444444432 36 48999
Q ss_pred ecccCC
Q 021685 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999985
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=89.39 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh-----CCCcccccCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSII-----GEKAVTVSTF 70 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~-----g~~~~~~~~~ 70 (309)
+.....+++.|++|+||||+++.|. |.++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456889999999999999999998 7776555533
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-09 Score=104.26 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcc-----cc------cCC------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAV-----TV------STF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~-----~~------~~~------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
||+|+|..++|||||..+|+-.... .+ .+. .+.|.......+.+++..++||||||..|+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 7899999999999999999722110 11 111 122334444566788999999999999654
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+....+ +-+|.+|+|++... .+..+....++...+. + .|.++++||+|..
T Consensus 81 ~~Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKM-G----IPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHH-T----CSCEECCEECCSS
T ss_pred HHHHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCeEEEEeccccc
Confidence 33444444 57899999977643 5667777777766655 2 6889999999974
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=94.62 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc-----------cccC------CCCCCCeeEEEEeee-------CCeEEEEEeCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAV-----------TVST------FQSEGPRPVMVSRSR-------AGFTLNIVDTP 95 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~-----------~~~~------~~~~t~~~~~~~~~~-------~g~~l~liDTP 95 (309)
=||+|+|..++|||||..+|+-.... ...+ ..+.|......++.+ ++..++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 37999999999999999998732110 0111 112232222333433 35789999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
|.-|+. .+....++ -+|.+|+|++... ++..+...+++...+.. .|.++++||+|.. ..+++
T Consensus 94 GHvDF~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~---~a~~~ 155 (709)
T 4fn5_A 94 GHVDFT---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ---GANFL 155 (709)
T ss_dssp SCTTCH---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST---TCCHH
T ss_pred CCcccH---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc---CccHH
Confidence 996653 34444443 5799999976543 57777777777766552 7999999999974 23455
Q ss_pred HHH
Q 021685 176 VFC 178 (309)
Q Consensus 176 ~~~ 178 (309)
..+
T Consensus 156 ~~~ 158 (709)
T 4fn5_A 156 RVV 158 (709)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.74 E-value=8.7e-08 Score=94.39 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcCCC----ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 23 TKLLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~----~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
..+.++.++++..+.. --.|+|+|++|+|||||+|.|.|-.
T Consensus 25 r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 25 RPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 3455566666665532 2359999999999999999999974
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=88.19 Aligned_cols=119 Identities=20% Similarity=0.155 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCC-------------CCeeEEEE----------------e
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSE-------------GPRPVMVS----------------R 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~-------------t~~~~~~~----------------~ 82 (309)
.+..|+++|.+|+||||+++.|. |.++..+...+.. ...+.... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998 5544333211100 00001000 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.||||||... .+......++.......+|.+++|++... ........+.+.+.. ....+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEE
Confidence 01357899999999843 33444444544433347899999955432 123334444444432 46789999
Q ss_pred cccCC
Q 021685 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99974
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-08 Score=94.76 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCC------------------------CCCCeeEEE----Eeee
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQ------------------------SEGPRPVMV----SRSR 84 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~------------------------~~t~~~~~~----~~~~ 84 (309)
+..|+++|.+|+||||+++.|.+. ++..++..+ +++.++... ....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999863 222221110 012221100 0012
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccC-c-EEEEEe
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK-R-ALIVLT 162 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~-~-~iiV~t 162 (309)
.+..+.||||||... .+......+........+|.+++|++... .. .....+ +.+... . + ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~----~~~~~~--~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTI-GQ--QAGIQA----KAFKEA--VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHH----HHHHTT--SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccc-cH--HHHHHH----HHHhhc--ccCCeEEEEe
Confidence 566899999999853 34444455544333347899999965432 11 122222 223221 3 4 889999
Q ss_pred cccCC
Q 021685 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 247 K~D~~ 251 (432)
T 2v3c_C 247 KLDGS 251 (432)
T ss_dssp CSSSC
T ss_pred CCCCc
Confidence 99974
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.9e-07 Score=76.17 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+|||||+|+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999965
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=81.83 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=67.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCC-------------CCCeeEEEE----------------ee
Q 021685 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-------------EGPRPVMVS----------------RS 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~-------------~t~~~~~~~----------------~~ 83 (309)
+-.|+++|.+|+||||+++.|. |.++..++.... ....+.... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5789999999999999999998 444322221000 000000000 01
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||..... .+......+........+|.+++|++.. . ........+.+.+.. ....+|+||
T Consensus 177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~--~-gq~a~~~a~~f~~~~-----~~~gVIlTK 247 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDAS--I-GQKAYDLASRFHQAS-----PIGSVIITK 247 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGGHHHHHHHHHHC-----SSEEEEEEC
T ss_pred hcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCc--c-chHHHHHHHHHhccc-----CCcEEEEec
Confidence 136689999999974310 2223334444333223678888885443 2 122334455555443 468899999
Q ss_pred ccCC
Q 021685 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
+|..
T Consensus 248 lD~~ 251 (433)
T 3kl4_A 248 MDGT 251 (433)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9974
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.9e-07 Score=83.34 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=56.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-----------------CcccccCCCCCCCeeEEEEeee---------C--CeEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE-----------------KAVTVSTFQSEGPRPVMVSRSR---------A--GFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-----------------~~~~~~~~~~~t~~~~~~~~~~---------~--g~~l 89 (309)
.-.-|.|+|++++|||||+|.|+|. ..+.++ +++..++.....+ . ...+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceE
Confidence 4467899999999999999999964 122222 2333333322222 1 2469
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021685 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.++||||+.+... +.+.-..|-. +..-=.+++||- +.+ .++..+.+.++.+.+
T Consensus 143 vllDTeG~~~~~~-~~~~d~~ifa-l~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 143 LLMDTQGTFDSQS-TLRDSATVFA-LSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEEEECCCSSHH-HHHHHHHHHH-HHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred EEEcCCccccccc-chhhhHHHHH-HHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 9999999976543 1111111111 000012444444 332 567777776665544
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=78.74 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=47.6
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCc-------cccChhHHHHHHHHHHHhCc
Q 021685 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-------YRVDNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~-------~~~~~~d~~~l~~l~~~~g~ 151 (309)
...+..++..+.+|||+|........ .. .-.+++++|+|++++. ..-...-.+.+.++......
T Consensus 159 ~~~~~~~~v~l~iwDtgGQe~~R~~w-------~~--yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 159 EYPFDLQSVIFRMVDVGGQRSERRKW-------IH--CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHTTG-------GG--GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEEeeceeeEEEEcCCchhHHHHH-------HH--HhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 44556788899999999983211111 11 2268999999987641 11112222344444444432
Q ss_pred c--ccCcEEEEEecccCC
Q 021685 152 Q--IWKRALIVLTHAQLS 167 (309)
Q Consensus 152 ~--~~~~~iiV~tk~D~~ 167 (309)
. ...|+++++||+|+.
T Consensus 230 ~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGGTTCEEEEEEECHHHH
T ss_pred hccCCceEEEEEECchhh
Confidence 1 226899999999984
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-06 Score=74.46 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=46.4
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-------ccChhHHHHHHHHHHHhCc
Q 021685 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-------~~~~~d~~~l~~l~~~~g~ 151 (309)
...+..++..+.+|||+|.. .....-..|. .+++++|||++++.. .-...-.+.+.++......
T Consensus 153 ~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 34556678899999999982 1111112222 799999999887521 0011112233333333221
Q ss_pred --cccCcEEEEEecccCC
Q 021685 152 --QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 --~~~~~~iiV~tk~D~~ 167 (309)
....|+++++||+|+.
T Consensus 224 ~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred hccCCCeEEEEEECchhh
Confidence 1226899999999974
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.1e-06 Score=79.04 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh-------CCCcccccCCCCCCC-----------------------eeEEE------E
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII-------GEKAVTVSTFQSEGP-----------------------RPVMV------S 81 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~-------g~~~~~~~~~~~~t~-----------------------~~~~~------~ 81 (309)
.+-.|+++|.+|+||||++..|. |.++..+...+.... ++... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999888 665543332211100 00000 0
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 82 ~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
....+..+.||||||.... ++.....+........+|.+++|++... . ......++.+.... ...-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~-g--~~~~~~~~~f~~~l-----~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT-G--QDAANTAKAFNEAL-----PLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB-C--TTHHHHHHHHHHHS-----CCCCEEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch-h--HHHHHHHHHHhccC-----CCeEEEE
Confidence 0114668999999997432 2333333333222247889999866542 1 12223333333221 2245799
Q ss_pred ecccCC
Q 021685 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999974
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=71.74 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCC-----------------------CCeeEEE------Eee
Q 021685 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSE-----------------------GPRPVMV------SRS 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~-----------------------t~~~~~~------~~~ 83 (309)
+-.|+++|.+|+||||+++.|. |.++..++..... ...+... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999888 4433222211100 0000000 001
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021685 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||..... .++.....++.......+|.+++|++... .......++.+.+.. ....+|+||
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~~-----~i~gvVlnk 248 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITK 248 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHTC-----TTEEEEEEC
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhhC-----CCCEEEEeC
Confidence 156689999999985411 22233333332212236889999965532 122333333333311 337889999
Q ss_pred ccCC
Q 021685 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9974
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.8e-05 Score=69.10 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccC-CCCCCC----------eeEEEEe------------------
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST-FQSEGP----------RPVMVSR------------------ 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~-~~~~t~----------~~~~~~~------------------ 82 (309)
.+--++++|++|+||||+++.|.|. ++...+. ...... ....+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999863 1111110 000000 0000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021685 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.++||+|........-..+..+.+.+ .+|-.+++.+... ...-.+.++.+.+.. ...++++|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilT 276 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILT 276 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 012445788999998543332222233333333 4788888844322 122334444454443 35789999
Q ss_pred cccCC
Q 021685 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|.|..
T Consensus 277 KlD~~ 281 (328)
T 3e70_C 277 KLDAD 281 (328)
T ss_dssp CGGGC
T ss_pred CcCCc
Confidence 99963
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.4e-06 Score=75.93 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|++|+|||||+|+|.|.....++... ++|...... ... ...++||||+...+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hcC--CEEEecCCCccccc
Confidence 47899999999999999999997543444332 233322211 121 24789999997643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.91 E-value=7.9e-05 Score=71.00 Aligned_cols=118 Identities=17% Similarity=0.266 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------Cccccc-CCCCC-------C---C--eeEEEEe----------------e
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVS-TFQSE-------G---P--RPVMVSR----------------S 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~-~~~~~-------t---~--~~~~~~~----------------~ 83 (309)
.--|+|+|.+|+|||||++.|.|. .+...+ +.... . + -...... .
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 457899999999999999999863 221111 10000 0 0 0000000 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh---hh---cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE
Q 021685 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF---LL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~---~~---~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
..+..+.|+||+|.... .......+++. .. ...+|-+++|.+... .......++.+.+..+ ..
T Consensus 373 ~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~~-----it 441 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAVG-----LT 441 (503)
T ss_dssp HTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHTC-----CS
T ss_pred hcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhcC-----CC
Confidence 13557899999998532 22233333222 11 234778888844321 2233344555555443 46
Q ss_pred EEEEecccCC
Q 021685 158 LIVLTHAQLS 167 (309)
Q Consensus 158 iiV~tk~D~~ 167 (309)
.+|+||.|..
T Consensus 442 gvIlTKLD~t 451 (503)
T 2yhs_A 442 GITLTKLDGT 451 (503)
T ss_dssp EEEEECGGGC
T ss_pred EEEEEcCCCc
Confidence 7899999964
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.5e-05 Score=67.06 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccCC-CCCC------------CeeEEEEe----------------e
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTF-QSEG------------PRPVMVSR----------------S 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~-~~~t------------~~~~~~~~----------------~ 83 (309)
+-.|+++|++|+||||+++.|.|. .+...+.. .... .-+..... .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999853 11111100 0000 00010000 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHhh---hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE
Q 021685 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i---~~~~---~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
..+..+.++||+|.... .......+ +..+ ....++.++++.+... .......++.+.+..| ..
T Consensus 182 ~~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~~-----~t 250 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAVG-----LT 250 (304)
T ss_dssp HHTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHHC-----CS
T ss_pred hCCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHcC-----Cc
Confidence 12445789999998542 22222222 2222 1256888888844322 2333445555554443 57
Q ss_pred EEEEecccCC
Q 021685 158 LIVLTHAQLS 167 (309)
Q Consensus 158 iiV~tk~D~~ 167 (309)
++++||.|..
T Consensus 251 ~iivTh~d~~ 260 (304)
T 1rj9_A 251 GVIVTKLDGT 260 (304)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCccc
Confidence 8999999864
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.1e-05 Score=67.38 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC-------CcccccCCC-CCCC------------eeEEEEe----------eeCCeE
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE-------KAVTVSTFQ-SEGP------------RPVMVSR----------SRAGFT 88 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~-------~~~~~~~~~-~~t~------------~~~~~~~----------~~~g~~ 88 (309)
+-.|+++|.+|+||||+++.|.+. ++..+.... ..+. -+..... ...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 457999999999999999888642 221111110 0000 0000000 124557
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.|+||||... .+...+..+.+.+....+|.+++|++... .. ..+..+.+.+.. ....-+|+||.|..
T Consensus 185 lvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred EEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 99999999842 33333344444433234677788854331 11 223333344431 13456778999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.3e-05 Score=68.57 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-.++++|++|+|||||+|+|. .....++.... +|...... ...+ --.++||||+...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EETT-TEEEESSCCCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--EcCC-CcEEEECcCcCcC
Confidence 468999999999999999999 64433333322 23322211 1211 2468999999643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=71.79 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-.++++|++|+|||||+|.|+|... ..++.... +|......... . ...++||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q--~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-H--GGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-T--SCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-C--CCEecCcccHHHh
Confidence 3689999999999999999999764 34333221 12222222211 1 2357999998654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.64 E-value=9.4e-05 Score=66.48 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-.|+++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999988874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.63 E-value=5.9e-05 Score=67.58 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|++|+|||||+|.|.|......+.... +|....... ... .-.++||||+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~~-~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FDF-GGYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CTT-SCEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cCC-CCEEEECcCCCccC
Confidence 368999999999999999999976433333221 222221111 111 23689999986544
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00055 Score=64.43 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHh-------C----------CCcccccCC-CCCCCeeEEEE----eee-CC--eEEEEEeC
Q 021685 40 LTILVMGKGGVGKSSTVNSII-------G----------EKAVTVSTF-QSEGPRPVMVS----RSR-AG--FTLNIVDT 94 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~-------g----------~~~~~~~~~-~~~t~~~~~~~----~~~-~g--~~l~liDT 94 (309)
.-|.|+|..++|||+|+|.|+ | ...+.+++. .++|.-..... ... .| ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 456699999999999999775 2 133444332 23343322211 111 33 46999999
Q ss_pred CCCCCCCCCcHH--HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021685 95 PGLIEGGYVNYH--AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 95 PG~~~~~~~~~~--~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.|+++.....+. .+=.+.-.+ ..++||= ..+ .+++.+.+-|..+.+
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LL----SS~~IyN--~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMI----SSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHH----CSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHHH----hhheeec--ccc-cCCHHHHHHHHHHHH
Confidence 999887654221 111111112 2444444 332 466666666655443
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=66.47 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc-------ChhHHHHHHHHHHHhCc
Q 021685 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-------DNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-------~~~d~~~l~~l~~~~g~ 151 (309)
...+.+++..+.+|||+|......... . +-.++|++|||++++...- ...-.+...++......
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~w~-------~--yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKKWI-------H--CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGG-------G--GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHHHH-------H--HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 344566788999999999843322211 1 2268999999988764210 11122333444443331
Q ss_pred --cccCcEEEEEecccCC
Q 021685 152 --QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 --~~~~~~iiV~tk~D~~ 167 (309)
....|+|+|+||+|+.
T Consensus 256 ~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred ccccCCcEEEEEECcCch
Confidence 1226899999999984
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0008 Score=60.77 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-.|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988874
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00015 Score=68.03 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||.... +......+......-.+|.+++|++.. .- ..-...++.+.+.. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence 4567999999997533 333333332222112688888885543 21 22223333333322 3467899999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 863
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0019 Score=59.19 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|+++|.+|+||||+++.|.|.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 346899999999999999999863
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00095 Score=59.75 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++++|.+|+||||+++.|.|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.36 E-value=1.2e-05 Score=67.76 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
--|+|+|++|+|||||+|.|++... ......+.+|+.+.. .+.+|..+.++|.+.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SEEDGKEYHFISTEEM 76 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TCCTTSSCEECCHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--CeeccccceeccHHHh
Confidence 4688999999999999999997542 122334445554432 2356666666666554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0033 Score=55.93 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.|+||||.... +......+......-.+|.+++|++.. . .....+.++.+.+.. ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~-~~~~~~~~~~~~~~~-----~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--T-GQEALSVARAFDEKV-----GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--G-THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--C-cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence 4567999999987432 333333333322222578888885543 2 122222233332221 3456899999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 964
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00042 Score=64.51 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=47.4
Q ss_pred EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHhCc-
Q 021685 80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE- 151 (309)
Q Consensus 80 ~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~g~- 151 (309)
..+.+++..+.||||+|......... .+ -.+++++|||++++... . ...-..+..++......
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~w~-------~y--f~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRKWI-------QC--FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGGGG-------GG--TTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred EEeecCCccceecccchhhhhhhhhH-------hh--ccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 34566788999999999954322221 12 26899999999886410 0 11112233333333321
Q ss_pred -cccCcEEEEEecccCC
Q 021685 152 -QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 -~~~~~~iiV~tk~D~~ 167 (309)
....|+++|+||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 1236899999999973
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0003 Score=64.66 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=44.4
Q ss_pred EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHhCc-
Q 021685 80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE- 151 (309)
Q Consensus 80 ~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~g~- 151 (309)
..+.+++..+.+|||+|......... .+ -.+++++|||++++... . ...-.+.+..+......
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~~w~-------~~--f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERKRWF-------EC--FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp EEEEETTEEEEEEEECC-------CT-------TS--CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEeeeCCeEEEEEeccchhhhhhhHH-------HH--hCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 44566788999999999943322211 11 26899999998886410 0 11112233333333321
Q ss_pred -cccCcEEEEEecccCC
Q 021685 152 -QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 -~~~~~~iiV~tk~D~~ 167 (309)
....|+|+|+||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 1226899999999984
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00022 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999975
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=54.28 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
...+.|+|||+.. .......+ ..+|.+++++..+. .+..-..+++.+.+........++.+|+|++|
T Consensus 75 ~yD~viiD~~~~~-----~~~~~~~l------~~ad~viiv~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSL-----SVITSAAV------MVSDLVIIPVTPSP--LDFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSS-----SHHHHHHH------HHCSEEEEEECSCT--TTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCC-----CHHHHHHH------HHCCEEEEEecCCH--HHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4579999999873 22222333 25788999966553 22333445555544321122245689999998
Q ss_pred C
Q 021685 166 L 166 (309)
Q Consensus 166 ~ 166 (309)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00052 Score=57.66 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++.+.......|+|+|++|+|||||++.|.|.
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444443345688999999999999999999875
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0014 Score=60.03 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=42.0
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-------ccChhHHHHHHHHHHHhCc--cccCc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGE--QIWKR 156 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-------~~~~~d~~~l~~l~~~~g~--~~~~~ 156 (309)
...+.+|||+|.......... .-+++|++|+|++++.. .-...-.++..++...... ....|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~---------y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIH---------LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGG---------GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhhhHHHHH---------HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 468999999999543322211 12689999999887510 0011112233333333321 12368
Q ss_pred EEEEEecccCC
Q 021685 157 ALIVLTHAQLS 167 (309)
Q Consensus 157 ~iiV~tk~D~~ 167 (309)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00051 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++++++|++|+|||||++.|.|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999763
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00023 Score=59.17 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00067 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||++.|.|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00095 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++|+|++|+|||||++.|.|-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999975
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.03 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||++.|.|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999843
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0012 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
--++|+|++|+|||||++.|.|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0043 Score=53.45 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-+.++..+.......+++|+++|.+|+||||+.+.|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445555555554445689999999999999999998863
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.|+++|.+|+||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999986
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0013 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--|+++|++|+||||+++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.--|+|+|++|+||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++++|++|+|||||++.+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEECCCCCCHHHHHHHHccC
Confidence 5789999999999999987653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0023 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999964
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999964
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0051 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+..|+|+|.+|+|||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|--
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=56.26 Aligned_cols=23 Identities=48% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|.|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0028 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999995
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999974
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0031 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999863
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0066 Score=50.54 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 25 LLELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 25 l~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.++.+++.+.. .....|+|+|.+|+||||+++.|.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444554432 3457899999999999999999875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=55.43 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999996
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=55.54 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0027 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++++|+.|+|||||++.|.|.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.072 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0035 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999964
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0031 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.=.++|+|++|+|||||++.|.|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347899999999999999999863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0025 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|--
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999864
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0041 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
...|+++|.+|+||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.071 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.+++.|++|+|||++++++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0041 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||+|.|++.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999999863
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh---CCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII---GEK 63 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~---g~~ 63 (309)
.+..|+|+|.+|+||||+++.|. |-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35789999999999999999999 764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.009 Score=46.94 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++.+.+.........|++.|++|+|||++..++...
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3344444433445678999999999999999999754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0036 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999985
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0044 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-|+|+|.+|+||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0092 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..++-|+|+|.+|+|||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888653
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.022 Score=48.33 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
....+.|||||+.... .... .+ ..+|.+++++..+...+.. -..+.+ +.+..+. ..+.+|+|+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~---~l------~~aD~viiv~~~~~~s~~~-~~~~~~-~~~~~~~---~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRG---TA------KAVDMMIAVIEPNLNSIKT-GLNIEK-LAGDLGI---KKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHH---HH------TTCSEEEEEECSSHHHHHH-HHHHHH-HHHHHTC---SCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH--HHHH---HH------HHCCEEEEecCCCHHHHHH-HHHHHH-HHHHcCC---ccEEEEEeCC
Confidence 3457899999876432 2211 22 5789999997665433211 122333 2233332 4688999998
Q ss_pred c
Q 021685 165 Q 165 (309)
Q Consensus 165 D 165 (309)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0035 Score=57.36 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||+++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0028 Score=53.44 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++.|.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0035 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0054 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0041 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+|+|.+|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0022 Score=52.38 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999975
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0068 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0082 Score=53.13 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhhc---CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 20 ATQTKLLELLGKLKQE---NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~---~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..+.+.+++..+-.. ...+.-|++.|.+|+||||+.+.|..
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444454444321 23467899999999999999999974
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.041 Score=49.78 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 23 TKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+.++...+... +..+-.++|.|++|+||||+++.+...
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3344455555432 334568999999999999999999854
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0032 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHh-CC
Q 021685 40 LTILVMGKGGVGKSSTVNSII-GE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~-g~ 62 (309)
--|+|+|++|+||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999 75
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0042 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||+|.|.|.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999863
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.015 Score=51.67 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccCh-hHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~-~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.+||| .......... + ..++|++++|++++....+. .-..++..+.. . ..|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~~-------~--~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~----~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKP-------H--VANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N----ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTT-------T--EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T----TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeecc-------c--cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C----CCCEEEEEeHHHc
Confidence 7999999 4333322221 1 26899999998876432222 22334544433 1 2799999999998
Q ss_pred C
Q 021685 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0045 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.|+|+|.+|+||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998753
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0046 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-++++|.+|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999975
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0063 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 021685 40 LTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l 59 (309)
+.|+++|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0057 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.006 Score=55.83 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0054 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...|+++|.+|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0068 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-.|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.014 Score=46.87 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.++...+... .+-.+++.|++|+|||++++.+...
T Consensus 30 ~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 445555555542 3456899999999999999988754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0055 Score=58.80 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||+|+|+|.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45999999999999999999975
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0075 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999985
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0052 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=-++|+|++|+|||||++.|.|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0062 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....-|+|+|++|+|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34678999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0087 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.....|+|+|.+|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999986
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.006 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.06 Score=50.49 Aligned_cols=69 Identities=16% Similarity=0.438 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
+--|++.|+||+|||+++.++.++- |.++..++.+.+... ...+ ....++... .
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~----------------------~~~~~~v~~s~l~sk-~~Ge-se~~ir~~F~~A 270 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI----------------------GANFIFSPASGIVDK-YIGE-SARIIREMFAYA 270 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCS-SSSH-HHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh----------------------CCCEEEEehhhhccc-cchH-HHHHHHHHHHHH
Confidence 4679999999999999999998652 123444565655432 2221 122222222 1
Q ss_pred cCCCcEEEEEEeCCc
Q 021685 117 NKTIDVLLYVDRLDV 131 (309)
Q Consensus 117 ~~~~d~il~v~~~d~ 131 (309)
....-+|||+..+|.
T Consensus 271 ~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHSCSEEEEEECCCS
T ss_pred HhcCCceeeeecccc
Confidence 235568888877774
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0065 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0056 Score=56.31 Aligned_cols=23 Identities=48% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999974
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0053 Score=57.42 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.|+|+|++|+|||||+++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999975
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0075 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|++|+|||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.017 Score=48.59 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998854
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0071 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999964
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0072 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999964
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0079 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
++|+|+|.+|+||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0073 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0083 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0092 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0051 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-+++|+|++|+|||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999853
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0077 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999974
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.032 Score=51.02 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.+ .+|+|++|+||||++++|.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 4589999999999999987
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+..|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999998864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0081 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999964
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0092 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0099 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+++|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999753
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.11 Score=47.45 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+.+.+.++.+. ...|++++|+++.. .+..+...+.+.++. +|+++|+||+|+.+.
T Consensus 57 e~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 57 DDFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCCc
Confidence 34444444333 47789999977642 234455566665552 799999999999744
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0098 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|+++|.+|+||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999998875
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.013 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0097 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.023 Score=47.54 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 86 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 86 g~~l~liDTPG~-~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
...+.|+|||+. ... .....+ ..+|.++++...+...+ ..-..+++.+.+.. ..++.+|+|++
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence 457999999986 321 222223 37899999966553222 11233444554422 14688999999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 131 ~~~ 133 (209)
T 3cwq_A 131 PPY 133 (209)
T ss_dssp CCT
T ss_pred CCc
Confidence 853
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.099 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|++|+|||+++.++.++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 467999999999999999999975
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...|+++|.+|+||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0099 Score=49.24 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+|+|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0068 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999964
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.013 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+..|+++|.+|+||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34688999999999999999998753
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.013 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l 59 (309)
.....||+|+|.+|+||||++..+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 346799999999999999999876
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+|||||++.|.|.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=46.28 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|++.|++|+|||++..++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999988754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.015 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..++.|+++|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.014 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988853
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.015 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
....|+|+|.+|+||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.11 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|+||+|||+++.++.++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.014 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.39 Score=42.82 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.021 Score=45.85 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+..+.+.+... ..-.+++.|++|+|||+++..+...
T Consensus 30 ~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 30 EIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 444555555442 3457899999999999999888754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.016 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0098 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...-|+|.|.+|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.015 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.014 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.014 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+|+|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999864
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.086 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|++|+|||+++.++.++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0066 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.018 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.016 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999975
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.018 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..|++.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.15 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.+++.|++|+|||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.02 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.017 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.019 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.021 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.04 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.019 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998863
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.02 Score=48.10 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..+.|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.037 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-.++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999863
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.014 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.02 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.011 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++|+|..|+|||||+|.|+|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 35788999999999999999753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.018 Score=55.65 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.021 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998854
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.021 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
++.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.031 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.++++|++|+|||++++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.026 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.015 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++++|++|+|||||++.+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999984
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.021 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|++.|.+|+||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.018 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.042 Score=49.18 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.+.+......+...-.|++.|++|+|||+++.++...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3445555554433444567999999999999999999643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.033 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.024 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.029 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.03 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.=.++|+|++|+|||||++.|.|-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999999753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.023 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++|+|++|+|||||++.|.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788999999999999988864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=55.32 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999964
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.69 Score=40.82 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-+++.|++|+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3566677999999999999743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.023 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.021 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.023 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|+|+|.+|+||||+.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999874
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.21 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+--|++.|++|+|||+|+.++.++
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3567999999999999999999865
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.029 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+++++|.+|+|||||++.|.|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999964
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.042 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+..|++.|++|+|||+++.++...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4578999999999999999999854
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.018 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999873
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.027 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+++|.+|+|||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999863
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.028 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++.|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998873
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.017 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999999864
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.02 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999975
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.03 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+|||+++.++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.012 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.025 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.018 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.016 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=16.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.39 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.|++.|++|+|||+++.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999644
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.026 Score=44.66 Aligned_cols=20 Identities=40% Similarity=0.863 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
++ +|+|++|+||||++.+|.
T Consensus 25 ~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 IN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EE-EEECCTTSSHHHHHHHHH
T ss_pred eE-EEECCCCCCHHHHHHHHH
Confidence 54 788999999999998875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.049 Score=49.16 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 24 KLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.++...+... +...-.++|.|++|+|||||++.+.+.
T Consensus 28 e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 28 QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344454444432 334457899999999999999999864
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.076 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
--+++.|++|+||||++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999988874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.031 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 021685 42 ILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g 61 (309)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.031 Score=46.87 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+++|+||+||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.027 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988853
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.24 Score=43.52 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=32.3
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+.||.. .++.+.+.+.+ ..+|+|++|+++.. ..+.....+- +..+. +|.++|+||+|+.+
T Consensus 5 w~PGhm------~ka~~~~~~~l--~~aDvVl~VvDAr~-p~~~~~~~l~----~~l~~---kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 5 WFPGHM------AKARREVTEKL--KLIDIVYELVDARI-PMSSRNPMIE----DILKN---KPRIMLLNKADKAD 64 (282)
T ss_dssp ----CT------THHHHHHHHHG--GGCSEEEEEEETTS-TTTTSCHHHH----HHCSS---SCEEEEEECGGGSC
T ss_pred CCchHH------HHHHHHHHHHH--hhCCEEEEEEeCCC-CCccCCHHHH----HHHCC---CCEEEEEECcccCC
Confidence 457762 13334444444 58999999977643 1222212222 22232 79999999999973
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.035 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..++|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.073 Score=43.75 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+|||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998854
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.024 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
--++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.033 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998853
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.038 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.++.|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999887
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.062 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++|.|++|+||||++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.13 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|+||+|||+++.++.++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.028 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.03 Score=44.73 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988863
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.026 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+++|+|.+|+|||||++.|.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.037 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.017 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+|+|+|++|+|||||++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999975
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.036 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988864
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.42 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.026 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.038 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-+|+|.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988853
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.094 Score=47.33 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+..+...+.......-.+++.|++|+|||+++.++...
T Consensus 54 ~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 54 RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3344445555443323358999999999999999988753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.065 Score=46.42 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHhhhc-CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 28 LLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~-~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.+... ...+-.+++.|++|+|||+++.++...
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34444322 334578999999999999999998754
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.049 Score=48.28 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....+.+.+......+...-.+++.|++|+|||+++.++..
T Consensus 20 ~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 20 LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp HHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 33445555554443333456799999999999999999874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.037 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|+.|+|||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999974
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.03 Score=47.37 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.17 Score=44.87 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|+++....++... .+++..+.. . ..|+++|+||+|+.+
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~----~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F----KVEPVIVFNKIDLLN 124 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T----TCEEEEEECCGGGCC
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C----CCCEEEEEEcccCCC
Confidence 589999999877532223221 234444433 1 278999999999963
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.19 Score=45.85 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=29.0
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+.+++++|+++.. +. ..+...+.+.++. +|+++|+||+|+.++
T Consensus 70 ~~~~lil~VvD~~d--~~---~s~~~~l~~~l~~---~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 70 ESKALVVNIVDIFD--FN---GSFIPGLPRFAAD---NPILLVGNKADLLPR 113 (369)
T ss_dssp HHCCEEEEEEETTC--SG---GGCCSSHHHHCTT---SCEEEEEECGGGSCT
T ss_pred ccCcEEEEEEECCC--CC---CchhhHHHHHhCC---CCEEEEEEChhcCCC
Confidence 46789999977643 21 1233334444442 799999999999754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.1 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....+++.|++|+|||+++.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999877643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.05 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.04 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.068 Score=47.48 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.6
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++...+.........|++.|++|+|||++..++..
T Consensus 12 ~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 12 QHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 334444444334567899999999999999999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.041 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++|+|++|+|||||++.|.|-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999999975
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.047 Score=45.65 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-|+|+|.||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999865
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.055 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.047 Score=58.27 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+++|+|++|+|||||++.|+|.-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 68999999999999999999864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.13 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.++|.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=92.99 E-value=0.058 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=20.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...++||+++|..++||||++..+-
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHH
T ss_pred hcccceEEEEcCCCCCchhHHHHHH
Confidence 4468999999999999999986553
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.047 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4578999999999999999999875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.046 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999998885
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.14 Score=48.17 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+.+.+++..+......+-.+++.|++|+|||++..++...
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 344455555555543334468999999999999999888753
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.078 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|++.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.15 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.+++.|++|+|||++++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.095 Score=47.05 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.081 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.57 E-value=3.3 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.|||||+.... .+.. .+ ...+|.+|+|++.+.... ..-...++.+.+. |. ..+-+|+|++|.
T Consensus 203 D~VIIDtpp~~~~--~da~---~l-----~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~-g~---~~~GvVlN~v~~ 266 (286)
T 3la6_A 203 DLVLIDTPPILAV--TDAA---IV-----GRHVGTTLMVARYAVNTL-KEVETSLSRFEQN-GI---PVKGVILNSIFR 266 (286)
T ss_dssp SEEEEECCCTTTC--THHH---HH-----TTTCSEEEEEEETTTSBH-HHHHHHHHHHHHT-TC---CCCEEEEEEECC
T ss_pred CEEEEcCCCCcch--HHHH---HH-----HHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhC-CC---CEEEEEEcCccc
Confidence 4899999988432 1111 11 157899999977764322 2223445555443 32 456789999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.053 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|+|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.099 Score=46.87 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..+-.++|.|++|+|||++++.++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346688999999999999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.038 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.46 E-value=0.11 Score=46.39 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999754
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.077 Score=43.63 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.07 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+....||+++|.+++||||++..+-
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4457899999999999999997764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.073 Score=44.32 Aligned_cols=19 Identities=42% Similarity=0.802 Sum_probs=16.5
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
.+|+|+.|+||||++.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677999999999998874
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.067 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
..-|++.|.+|+||||+.+.|.+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999999753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.1 Score=47.19 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc-cccC--------CCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAV-TVST--------FQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~-~~~~--------~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
+.-|+|+|+||+|||||...|...-.. .++. ..-.|..+. ..+..|.+..++|...+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 356999999999999999999975321 1111 111233221 12356777777887766
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.098 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.|++.|++|+|||++..+|...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.21 Score=46.90 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=35.2
Q ss_pred cccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 12 MGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 12 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+.+.+|-..-++.+..++..+.... -.++|.|.+|+|||+++..+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHH
Confidence 5677777777777777766666522 278999999999999988776
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.13 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+++.|++|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888764
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.094 Score=48.62 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=21.9
Q ss_pred hcCCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 34 QENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 34 ~~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.....++||+++|...+||||++..+-
T Consensus 35 ~~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 35 QVYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp -CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHhhccceEEEecCCCCchhhHHHHHH
Confidence 334568999999999999999997653
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.1 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998743
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.09 Score=49.67 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++.|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.075 Score=50.82 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.++|+|.||+|||+++|+|+.
T Consensus 169 HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999885
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.08 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-|+|+|.+|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999888753
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.14 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|++|+||||+++++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.081 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
++.|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.096 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+|+|.+|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998854
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.019 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+|++|+|||||+++|.|-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 368899999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 309 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-73 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-06 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 6e-06 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 1e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-05 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-05 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 4e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.001 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 0.001 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 0.001 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.002 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.002 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 0.004 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 225 bits (574), Expect = 1e-73
Identities = 181/254 (71%), Positives = 213/254 (83%), Gaps = 1/254 (0%)
Query: 8 IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV 67
+REW GI F PATQTKLLELLG LKQE+VN+LTILVMGKGGVGKSSTVNSIIGE+ V++
Sbjct: 1 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI 60
Query: 68 STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVD 127
S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N A+ +IK FLL+KTIDVLLYVD
Sbjct: 61 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 120
Query: 128 RLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLK 187
RLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PD L Y+ F SKRSEALL+
Sbjct: 121 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 180
Query: 188 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247
V + KKD Q S +PVVL+ENSGRC KN++DEKVLPNG AWIP+LV+TITEV LN
Sbjct: 181 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 239
Query: 248 SKALLVDKKLVEGP 261
S+++ VDK L++
Sbjct: 240 SESIFVDKNLIDKL 253
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (110), Expect = 2e-06
Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 33/241 (13%)
Query: 21 TQTKLLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---E 73
+ + L + V G+ G GKSS +N++ G ++ E
Sbjct: 34 RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE 93
Query: 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR 133
+ + D PG+ G N+ +++ + ++ R
Sbjct: 94 VTMERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYEYDFFIIISAT----R 146
Query: 134 VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193
D I +AI + K V T + + D E + E +L+ + +
Sbjct: 147 FKKNDIDIAKAI-----SMMKKEFYFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNC 200
Query: 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV 253
++ + P+ L+ N C + P L+ + + + +
Sbjct: 201 VNTFRENGIAEPPIFLLSNKNVCHYD-------------FPVLMDKLISDLPIYKRHNFM 247
Query: 254 D 254
Sbjct: 248 V 248
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 43.9 bits (102), Expect = 6e-06
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 3/136 (2%)
Query: 33 KQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIV 92
K E + + + ++G+ VGKS+ N+I+ ++ VS PV G V
Sbjct: 2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
Query: 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTI---DVLLYVDRLDVYRVDNLDKQITRAITDNF 149
DT GL V ++ + + +I DV++ V +
Sbjct: 62 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR 121
Query: 150 GEQIWKRALIVLTHAQ 165
+ ++ H +
Sbjct: 122 ASVVVFNKWDLVVHRE 137
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 3/149 (2%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101
+ ++G GKSS + ++ + + V + D PG+IEG
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG- 62
Query: 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161
L FL + +L + + + + + + +L+ L
Sbjct: 63 --ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 162 THAQLSLPDRLDYEVFCSKRSEALLKFVS 190
L + + R + VS
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVS 149
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 1/140 (0%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
+ +++ G+ GKSS +N++ G +A V+ + G L+I+DT GL E
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRAL 158
+ + VL VD VD + A R
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 159 IVLTHAQLSLPDRLDYEVFC 178
+T L + + + +
Sbjct: 122 ADITGETLGMSEVNGHALIR 141
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99
L ++++GK VGKS+ +N ++ E V+ + G IVDT G +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VR 59
Query: 100 GGYVNYHAIQLIKRFLLN-KTIDVLLYV 126
+ I+R L + D++L+V
Sbjct: 60 SETNDLVERLGIERTLQEIEKADIVLFV 87
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 4e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 34 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIV 92
++ + TL IL++G+ GVGKSS + + ++ + +S L I
Sbjct: 2 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61
Query: 93 DTPG 96
DT G
Sbjct: 62 DTAG 65
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 42 ILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
IL++G VGK+S + + + + R+ L I DT G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (87), Expect = 4e-04
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
T+L++G+ VGKS+ N ++ +K V + PV + G T +VDT G+ +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 101 GYVNYHAIQLIKRFLLNKTIDVLLYV 126
+ + D++L+V
Sbjct: 62 PQDIISQKMKEVTLNMIREADLVLFV 87
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 0.001
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100
+ ++G VGKS+ ++ + K + + + + G + + D PGLIEG
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 101 GYVNYHAIQLIKRFL 115
+ + L +FL
Sbjct: 63 ---AHQGVGLGHQFL 74
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 36.9 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63
LL +L KLK + IL++G GK++ + + E
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED 40
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.001
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
LV+G G GKS ++ I +K + +++ L I DT G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS 68
E + + ++GK VGKS+ +N+++G K +S
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS 34
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (82), Expect = 0.002
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
IL++G GVGKS + + +K + T + V + L I DT G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.004
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 96
I+++G GVGK+ V V + L I DT G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 100.0 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.84 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.81 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.8 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.79 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.77 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.72 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.71 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.69 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.68 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.68 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.68 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.68 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.67 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.66 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.66 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.66 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.65 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.62 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.61 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.61 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.61 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.59 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.58 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.57 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.57 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.56 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.55 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.54 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.52 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.51 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.51 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.5 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.5 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.49 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.47 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.43 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.43 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.39 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.37 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.33 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.33 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.32 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.31 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.27 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.26 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.24 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.14 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.11 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.09 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.04 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.03 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.03 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.92 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.92 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.9 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.71 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.47 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.42 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.42 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.34 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.32 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.97 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.95 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.89 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.85 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.71 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.67 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.67 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.63 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.62 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.6 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.58 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.48 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.48 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.43 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.41 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.38 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.37 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.36 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.33 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.3 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.29 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.28 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.28 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.23 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.2 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.2 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.17 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.16 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.14 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.14 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.12 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.11 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.08 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.08 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.08 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.06 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.05 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.05 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.03 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.93 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.93 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.92 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.89 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.88 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.87 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.85 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.75 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.73 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.71 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.69 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.68 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.67 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.55 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.41 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.4 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.2 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.1 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.01 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.86 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.59 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.53 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.37 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.37 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.3 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.28 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.24 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.15 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.1 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.02 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.95 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.67 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 93.45 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 93.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.19 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.19 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.55 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.39 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.32 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 92.28 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.27 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.24 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.14 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 92.08 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.86 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.76 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.63 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.29 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.27 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.97 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 90.94 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 90.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.75 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.66 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.55 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.46 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.23 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.9 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.74 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 89.71 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.61 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.37 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 89.09 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.91 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.72 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.39 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.17 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 88.06 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.66 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.41 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 87.37 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.93 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.61 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.02 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.59 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 85.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 84.88 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 83.69 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.67 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.2 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.16 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.63 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.66 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=100.00 E-value=1.6e-40 Score=293.31 Aligned_cols=251 Identities=72% Similarity=1.127 Sum_probs=228.0
Q ss_pred hhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe
Q 021685 8 IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 8 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
+++|.|++++|.++++.+.++++.++++...+++|+++|++|+|||||+|+|+|++.+.+++.+++|+.+..+....+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~ 80 (257)
T d1h65a_ 1 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF 80 (257)
T ss_dssp CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE
T ss_pred CchhhhHhhhhHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE
Confidence 37899999999999999999999999999899999999999999999999999999999998899999999999999999
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.||||||+.+....+++....+..+.....+|+++||++++..+++..+...++.+.+.||+++++++|+|+||+|..
T Consensus 81 ~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~ 160 (257)
T d1h65a_ 81 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 160 (257)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccC
Confidence 99999999999888888877777777777788999999999988789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 168 LPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++++.++++|+....+.+...+..+...... .....+|+++++|.++|+++...++++|+...|++.|+..+..++.+.
T Consensus 161 ~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~ 239 (257)
T d1h65a_ 161 PPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 239 (257)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSS
T ss_pred CcCCCcHHHHHHhhhHHHHHHHHHHhhhhhh-hccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcC
Confidence 8888899999998889999999887654432 234568999999999999999999999999999999999999999999
Q ss_pred CCcceecccccc
Q 021685 248 SKALLVDKKLVE 259 (309)
Q Consensus 248 ~~~~~~~~~~~~ 259 (309)
.+.+.+++++++
T Consensus 240 ~~~i~~~~~~i~ 251 (257)
T d1h65a_ 240 SESIFVDKNLID 251 (257)
T ss_dssp SCCEECCHHHHH
T ss_pred CCCccccHHHHh
Confidence 888888876553
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=5.9e-20 Score=151.48 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=95.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~~~~ 118 (309)
-+|+|+|.+|+|||||+|+|+|.+...++..+++|...........+..+.++||||+.+......+... .+.+. ..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~~ 83 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA--LA 83 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH--TS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc--cc
Confidence 3799999999999999999999988788888888888888888888999999999999776554433322 22222 36
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|+++.. .++..+..+++.+.+..+. +|+++|+||+|+.
T Consensus 84 ~ad~il~v~D~~~-~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~ 128 (178)
T d1wf3a1 84 DVNAVVWVVDLRH-PPTPEDELVARALKPLVGK---VPILLVGNKLDAA 128 (178)
T ss_dssp SCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGC
T ss_pred cccceeeeechhh-hhcccccchhhheeccccc---hhhhhhhcccccc
Confidence 8999999977653 4677777777777654333 6999999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=6.9e-19 Score=145.64 Aligned_cols=166 Identities=20% Similarity=0.336 Sum_probs=110.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC---------CcHHHH
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---------VNYHAI 108 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~---------~~~~~~ 108 (309)
+.+||+++|.+|+|||||+|+|+|.+...++..++++.........+++..+.++||||+..... ......
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 56999999999999999999999998878888888888777777888999999999999864221 112233
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHh
Q 021685 109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 188 (309)
Q Consensus 109 ~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 188 (309)
..+ ..+|++++|++.+. .....+..++..+... + .|+|+|+||+|+........+++. +.+++.
T Consensus 87 ~~~------~~~dvii~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~i~v~nK~D~~~~~~~~~~~~~----~~~~~~ 150 (186)
T d1mkya2 87 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-G----RASVVVFNKWDLVVHREKRYDEFT----KLFREK 150 (186)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTTGGGCHHHHH----HHHHHH
T ss_pred HHH------hcCCEEEEeecccc-cchhhHHHHHHHHHHc-C----CceeeeccchhhhcchhhhhhhHH----HHHHHH
Confidence 333 47899999977653 4566676776666543 2 699999999998755443344332 222322
Q ss_pred hcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 189 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 189 i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
+... ..+|++++|+. ++.+ +++|++.|.++.
T Consensus 151 ~~~~----------~~~~i~~vSa~----~g~g-----------v~~L~~~i~~~~ 181 (186)
T d1mkya2 151 LYFI----------DYSPLIFTSAD----KGWN-----------IDRMIDAMNLAY 181 (186)
T ss_dssp CGGG----------TTSCEEECBTT----TTBS-----------HHHHHHHHHHHH
T ss_pred hccc----------CCCeEEEEeCC----CCCC-----------HHHHHHHHHHHH
Confidence 2211 13788888774 3333 788888886654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=4.5e-19 Score=164.37 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=113.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCccc----ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVT----VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI 111 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~----~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i 111 (309)
+..+++|+|+|++|+|||||+|+|+|..... .....++|.....+.. .++.++.||||||+++.....++++...
T Consensus 53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHh
Confidence 3468999999999999999999999964322 2233445666555443 3555799999999987766665554332
Q ss_pred HHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC-------CCCCCCHHHHHHhhhHH
Q 021685 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS-------LPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 112 ~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~-------~~~~~~~~~~~~~~~~~ 184 (309)
....+|++|++ .+. +++..|.++++.+.+. + +|+++|+||+|.. .+...+.++.++...+.
T Consensus 132 ----~~~~~d~~l~~--~~~-~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~ 199 (400)
T d1tq4a_ 132 ----KFYEYDFFIII--SAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 199 (400)
T ss_dssp ----TGGGCSEEEEE--ESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred ----hhhcceEEEEe--cCC-CCCHHHHHHHHHHHHc-C----CCEEEEEeCcccccchhhhcccccccHHHHHHHHHHH
Confidence 22478988888 443 6889999999988775 3 7999999999863 11222334444333333
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021685 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
+.+.+... .....|++++++... +..+ ++.|.+.+...++...+.
T Consensus 200 ~~~~l~~~--------~~~~~~vflvS~~~~-----------~~~d--~~~L~~~l~~~L~~~~~~ 244 (400)
T d1tq4a_ 200 CVNTFREN--------GIAEPPIFLLSNKNV-----------CHYD--FPVLMDKLISDLPIYKRH 244 (400)
T ss_dssp HHHHHHHT--------TCSSCCEEECCTTCT-----------TSTT--HHHHHHHHHHHSCGGGHH
T ss_pred HHHHHHHc--------CCCCCCEEEecCCcc-----------cccC--HHHHHHHHHHHhHHHHHH
Confidence 33333322 122357777765211 1111 788888887777665443
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=2.9e-18 Score=141.39 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH----Hhh-
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK----RFL- 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~----~~~- 115 (309)
+|+++|.+|||||||+|+|+|++. .+++.+++|++...+. .. .+.++||||++..........+.+. .+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~~--~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 76 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeecccccc--cc--cceecccCCceeccccccccccccchhhhhhhh
Confidence 699999999999999999999876 6788888998765432 33 4778999999765444433222221 121
Q ss_pred -hcCCCcEEEEEEeCCc----------cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 -LNKTIDVLLYVDRLDV----------YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 -~~~~~d~il~v~~~d~----------~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|++++|++... ......|..+++.+.+. + +|+++|+||+|+.
T Consensus 77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~----~p~iiv~NK~D~~ 134 (184)
T d2cxxa1 77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-D----IPTIVAVNKLDKI 134 (184)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-C----CCEEEEEeeeehh
Confidence 2357899999965431 12455666777766553 2 7999999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.2e-18 Score=143.68 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=100.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE-EEeeeCCeEEEEEeCCCCCCCCC----CcHHHHHHHHHhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~-~~~~~~g~~l~liDTPG~~~~~~----~~~~~~~~i~~~~ 115 (309)
+|+++|.+|||||||+|+|+|..... ....+.|..... ......+..+.++||||+.+... ...+++..+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~---- 77 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI---- 77 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEE-CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce-eccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHH----
Confidence 48999999999999999999987644 344444444433 34445677899999999865322 112333333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+++++++++.... .......+...+.........+|+++|+||+|+..++ + . +.+.+.+...
T Consensus 78 --~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~-----~-~----~~~~~~~~~~--- 141 (180)
T d1udxa2 78 --ARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE-----A-V----KALADALARE--- 141 (180)
T ss_dssp --TSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH-----H-H----HHHHHHHHTT---
T ss_pred --Hhhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH-----H-H----HHHHHHHHhc---
Confidence 688999999665421 1122222333332221222237999999999986321 1 1 2233333221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
..|++.+|+. ++.+ +++|.+.|...+...
T Consensus 142 --------~~~~~~iSA~----tg~g-----------id~L~~~i~~~l~~~ 170 (180)
T d1udxa2 142 --------GLAVLPVSAL----TGAG-----------LPALKEALHALVRST 170 (180)
T ss_dssp --------TSCEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred --------CCeEEEEEcC----CCCC-----------HHHHHHHHHHHHhhc
Confidence 3688888763 5544 788998888777554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3e-18 Score=138.31 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhhcC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~~~ 118 (309)
++|+++|++|||||||+|+|+|.+...++..++++...........+..+.++||||+.+.....+.. ...... ...
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~--~~~ 79 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQ--EIE 79 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHH--HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHH--HHH
Confidence 79999999999999999999999887788888888888888888899999999999998754433321 111111 235
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+|+++++++.... ....+......+.+..... +|+++|+||+|+.+
T Consensus 80 ~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 80 QADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAK--LPITVVRNKADITG 126 (161)
T ss_dssp TCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHC
T ss_pred hccccceeeccccc-cchhhhhhhhhhhhhcccc--cceeeccchhhhhh
Confidence 89999999776542 2333444444444443332 79999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.9e-18 Score=139.35 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=106.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC--Cc----HHHHHHHHH
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY--VN----YHAIQLIKR 113 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~--~~----~~~~~~i~~ 113 (309)
+||+++|.+|+|||||+|+|+|++...++..++++...........+..+.++||||+..... .+ +.+++.+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~-- 78 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI-- 78 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH--
Confidence 689999999999999999999998878888888888888888888999999999999854321 11 2233333
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021685 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
..+|++++|++.+. .....+..+...+. . .++++++||.|..+... . +.+.+.+...
T Consensus 79 ----~~ad~ii~v~d~~~-~~~~~~~~~~~~~~----~---~~~i~~~~k~d~~~~~~--~--------~~~~~~~~~~- 135 (160)
T d1xzpa2 79 ----EKADIVLFVLDASS-PLDEEDRKILERIK----N---KRYLVVINKVDVVEKIN--E--------EEIKNKLGTD- 135 (160)
T ss_dssp ----HHCSEEEEEEETTS-CCCHHHHHHHHHHT----T---SSEEEEEEECSSCCCCC--H--------HHHHHHHTCS-
T ss_pred ----HhCCEEEEEEeCCC-Ccchhhhhhhhhcc----c---ccceeeeeeccccchhh--h--------HHHHHHhCCC-
Confidence 47899999977764 34455554443331 1 58999999999864432 2 2233333221
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHH
Q 021685 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~ 242 (309)
.|++.+|+. ++.+ +++|.+.|.+
T Consensus 136 -----------~~~~~vSA~----~g~g-----------i~~L~~~I~k 158 (160)
T d1xzpa2 136 -----------RHMVKISAL----KGEG-----------LEKLEESIYR 158 (160)
T ss_dssp -----------TTEEEEEGG----GTCC-----------HHHHHHHHHH
T ss_pred -----------CcEEEEECC----CCCC-----------HHHHHHHHHh
Confidence 578887763 4443 7888887754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.4e-17 Score=135.93 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=79.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHhhhcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~--~~~~~~~i~~~~~~~ 118 (309)
+|+|+|.+|+|||||+|+|+|.+...++..+++|...........+..+.++||||+.+.... ..........++ .
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~ 79 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--R 79 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccc--c
Confidence 699999999999999999999987778888888888877778888889999999998764322 222222222333 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|+++++.+.+. .....+..++..+... + +|+++|+||+|+.
T Consensus 80 ~ad~i~~~~~~~~-~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~ 122 (171)
T d1mkya1 80 EADLVLFVVDGKR-GITKEDESLADFLRKS-T----VDTILVANKAENL 122 (171)
T ss_dssp TCSEEEEEEETTT-CCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred cCcEEEEeecccc-cccccccccccccccc-c----ccccccchhhhhh
Confidence 8899999976543 4667777777777654 3 6899999999984
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=2.1e-16 Score=128.04 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=84.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....+..+...........+. .+.+|||||..+.......+ +
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~-~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~----- 72 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y----- 72 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H-----
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhh---h-----
Confidence 38999999999999999999997542 2222233333444445555554 67999999987665555432 2
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..+|++++|++++... +. .-..++..+.+..+. .|+++|+||+|+......+.++
T Consensus 73 -~~~~~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~~~ 128 (164)
T d1z2aa1 73 -RGAQACVLVFSTTDRESFE-AISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKNEE 128 (164)
T ss_dssp -TTCCEEEEEEETTCHHHHH-THHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCHHH
T ss_pred -ccCceEEEEEeccchhhhh-hcccccccccccCCC---ceEEEeeccCCcccceeeeehh
Confidence 5899999998886432 32 234566777665543 6899999999987555544443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.72 E-value=1.3e-16 Score=131.39 Aligned_cols=168 Identities=11% Similarity=0.114 Sum_probs=102.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC------CCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE------GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~------t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~ 110 (309)
.+.++|+++|.+|+|||||+|+|++.......+.... +...........+..+.++||||.. .....
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------~~~~~ 75 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRA 75 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHH
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc-------ccccc
Confidence 4568999999999999999999998654333222211 1222223344677889999999972 22222
Q ss_pred HHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhc
Q 021685 111 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (309)
+...+ ..+|++++|++... .....+.+.+..+... + .|+++|+||+|+.+.+ + .+...+.+++.+.
T Consensus 76 ~~~~l--~~~d~~ilv~d~~~-g~~~~~~~~~~~~~~~-~----~p~iiv~NKiD~~~~~-----~-~~~~~~~~~~~~~ 141 (179)
T d1wb1a4 76 VVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNAGTE-----E-IKRTEMIMKSILQ 141 (179)
T ss_dssp HHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSCHH-----H-HHHHHHHHHHHHH
T ss_pred hhhhh--hhcccccccccccc-ccchhhhhhhhhhhhc-C----CcceeccccccccCHH-----H-HHHHHHHHHHHHH
Confidence 32333 57899999977653 4566677766665543 3 7999999999986332 1 1111122333333
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.... ...+|++++|+. ++.+ +++|.+.|...+++.
T Consensus 142 ~~~~-------~~~~~iv~iSA~----~g~g-----------i~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 142 STHN-------LKNSSIIPISAK----TGFG-----------VDELKNLIITTLNNA 176 (179)
T ss_dssp HSSS-------GGGCCEEECCTT----TCTT-----------HHHHHHHHHHHHHHS
T ss_pred Hhhc-------CCCCeEEEEEcc----CCcC-----------HHHHHHHHHhcCCcc
Confidence 2211 123799988874 4443 889999998887653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=5.7e-17 Score=133.89 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=99.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCC----CcHHHHHHHHHhh
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~----~~~~~~~~i~~~~ 115 (309)
+|+++|++|||||||+|+|+|.+. .+.+.+++|.+....... .++..+.++||||+.+... ....++..+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~---- 77 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---- 77 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH----
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHH----
Confidence 589999999999999999999886 445556666655554444 3567899999999843222 222333333
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHH-HHHHHHHhC-ccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQI-TRAITDNFG-EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~-l~~l~~~~g-~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
..++.+++++..... .....+... ......... ....+|+++|+||+|+.+. .+. .+.+++.+..
T Consensus 78 --~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~----~~~~~~~~~~- 145 (185)
T d1lnza2 78 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AEN----LEAFKEKLTD- 145 (185)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHH----HHHHHHHCCS-
T ss_pred --HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHH----HHHHHHHhcc-
Confidence 356777777654322 222233222 222222222 2234789999999998521 111 1223332221
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021685 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
..|++++|+ .++.+ +++|++.|...+.+..
T Consensus 146 -----------~~~v~~iSA----~~g~G-----------i~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 146 -----------DYPVFPISA----VTREG-----------LRELLFEVANQLENTP 175 (185)
T ss_dssp -----------CCCBCCCSS----CCSST-----------THHHHHHHHHHHTSCC
T ss_pred -----------CCcEEEEEC----CCCCC-----------HHHHHHHHHHhhhhCC
Confidence 257777766 34443 7899999888876543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.8e-16 Score=127.19 Aligned_cols=128 Identities=20% Similarity=0.114 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+++||+++|.+|||||||+|++++... .....++...........++. .+.+|||+|...... .....+
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~~---- 71 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA---MQRLSI---- 71 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH---HHHHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCC--CCccCcceeeccccceeeccccceeccccccccccccc---cccccc----
Confidence 368999999999999999999998752 223333333444444555665 577899999854321 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..+|++++|++++.......-..++..+.+..+.....|+++|+||+|+.++...+.++
T Consensus 72 --~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e 130 (171)
T d2erxa1 72 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE 130 (171)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHH
T ss_pred --cceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHH
Confidence 47899999988864321122245555665555544447999999999986555555443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4e-16 Score=126.99 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=73.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|||||||+|++.+.... ....++..........++. .+.+|||||..+....... ++
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~-------~~-- 69 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDG---PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH-------CM-- 69 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-------CHHH-------HH--
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccC---CcCCeeeeeecceeeccccccceeeeecccccccceeccc-------ch--
Confidence 79999999999999999999987532 2222333333444555554 7889999998554333222 22
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++....-..-..++..+....+. ...|+++|+||+|+......+.+
T Consensus 70 ~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~ 126 (168)
T d2gjsa1 70 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREVSVD 126 (168)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHH
T ss_pred hhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcchhHH
Confidence 6899999999886532112224566666555432 22689999999998655444444
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=7.4e-16 Score=128.23 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=99.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH---HHHHHHHhh-
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH---AIQLIKRFL- 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~---~~~~i~~~~- 115 (309)
+|+|+|.+|||||||+|+|+|.+. +.++..+.+|........ ...+.++|++|.+........ ....+....
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHHhhhhc
Confidence 899999999999999999999753 345556666665444332 235678999988655443332 111222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|+++++++.+. .++..+.++++.+... + +|+++|+||+|+.++. ..++.. +.+++.+...
T Consensus 102 ~~~~~~~vi~viD~~~-~~~~~~~~~~~~l~~~-~----~piivv~NK~D~~~~~--~~~~~~----~~~~~~l~~~--- 166 (195)
T d1svia_ 102 TREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-G----IPVIVIATKADKIPKG--KWDKHA----KVVRQTLNID--- 166 (195)
T ss_dssp HCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCGG--GHHHHH----HHHHHHHTCC---
T ss_pred cccchhhhhhhhhccc-cccccccccccccccc-c----CcceechhhccccCHH--HHHHHH----HHHHHHhccc---
Confidence 3357899999976543 4778888888888764 2 7999999999986433 233332 2333333221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
...+++++++. ++.+ +++|++.|...+
T Consensus 167 -------~~~~~~~~SA~----~~~g-----------i~el~~~i~~~l 193 (195)
T d1svia_ 167 -------PEDELILFSSE----TKKG-----------KDEAWGAIKKMI 193 (195)
T ss_dssp -------TTSEEEECCTT----TCTT-----------HHHHHHHHHHHH
T ss_pred -------CCCCEEEEeCC----CCCC-----------HHHHHHHHHHHh
Confidence 12577777763 4443 788888877665
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.6e-16 Score=126.72 Aligned_cols=163 Identities=20% Similarity=0.156 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.+||+|+|.+|||||||+|++++... .....++..........++|. .+.+|||+|..+.......+ +
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~---- 75 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQY---M---- 75 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHH---H----
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEeccCCeeeeeeccccccccccccccchh---h----
Confidence 569999999999999999999997652 333344444555555666665 57789999997655544332 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++...-...-..++..+.+..+.. ..|+++|+||+|+........++. .++....
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~~~~~~~--------~~~~~~~--- 141 (173)
T d2fn4a1 76 --RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEA--------SAFGASH--- 141 (173)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGGGCCSCHHHH--------HHHHHHT---
T ss_pred --ccceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhhccccchhhh--------hHHHHhc---
Confidence 36899999988864321122244555555544322 269999999999864444333322 1221111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
++|++.+|+. ++.+ +.++++.+.+.+..
T Consensus 142 --------~~~~~e~Sak----~g~g-----------v~e~f~~l~~~i~k 169 (173)
T d2fn4a1 142 --------HVAYFEASAK----LRLN-----------VDEAFEQLVRAVRK 169 (173)
T ss_dssp --------TCEEEECBTT----TTBS-----------HHHHHHHHHHHHHH
T ss_pred --------CCEEEEEeCC----CCcC-----------HHHHHHHHHHHHHH
Confidence 2566656553 4444 78888887776643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.4e-16 Score=127.63 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=80.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|+|||||+|++.+... .....+..+..........++. .+.+|||||.... ......+
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~-- 74 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSY-- 74 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGG--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccceEEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHH--
Confidence 38999999999999999999997653 3333444445555555666665 5788999996221 1111222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..++|++++|++++.........++...+.+..... .|+++|+||+|+......+.+
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~~~v~~~ 131 (171)
T d2ew1a1 75 YRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ 131 (171)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH
T ss_pred HhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccccchhhh
Confidence 268999999988764321123344555555543332 689999999998654444444
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.69 E-value=6.6e-16 Score=126.18 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=82.7
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021685 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
.+++++.....++||+++|.+|||||||+|+|.+.....+.+.. ..........+..+.++|+||.... ....
T Consensus 5 ~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~----~~~~~~i~~~~~~~~i~d~~g~~~~---~~~~ 77 (176)
T d1fzqa_ 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ----GFNIKSVQSQGFKLNVWDIGGQRKI---RPYW 77 (176)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEET----TEEEEEEEETTEEEEEEECSSCGGG---HHHH
T ss_pred HHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeee----eeeEEEeccCCeeEeEeeccccccc---hhHH
Confidence 45666666667899999999999999999999988753333222 2233455667889999999998432 2121
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++ ..+|++++|++++..........++..+..... ....|+++|+||+|+.+.
T Consensus 78 ----~~~~--~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~ 132 (176)
T d1fzqa_ 78 ----RSYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (176)
T ss_dssp ----HHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred ----HHHh--hccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc
Confidence 2222 689999999887542211111223333322222 123699999999999644
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.68 E-value=3.3e-16 Score=126.72 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=75.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
++||+++|.+|+|||||+|+|.+..... ..+|..........++..+.+|||||..... ..... ...
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~--~~~ 68 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVDT----ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRN--YFE 68 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCSS----CCCCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGG--GCT
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCCc----ccceEeeeeeeccccccceeeeecCcchhhh-------hHHHh--hhh
Confidence 5899999999999999999999876422 2334555566677889999999999962111 11111 226
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++++|++.... .+......+...+..... ...|+++|+||+|+.
T Consensus 69 ~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~ 116 (165)
T d1ksha_ 69 STDGLIWVVDSADRQRMQDCQRELQSLLVEERL--AGATLLIFANKQDLP 116 (165)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTST
T ss_pred hhhcceeeeecccchhHHHHHHhhhhhhhhccc--CCCceEEEEeccccc
Confidence 89999999886432 222222223333222211 226999999999985
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.4e-16 Score=124.98 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=100.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|||||||+|++++.+. .....++.+..........++ ..+.+|||+|..+....... .+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~------ 70 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPS---YI------ 70 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHH---HH------
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCC-CCccccceeeeccceeeccCCCceeeeecccCCcchhccchHH---Hh------
Confidence 6899999999999999999997753 222233333333333444444 46899999998543322211 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
..+|++++|++++....-..-..++..+....+.. .|+++|+||+|+.+......++.. ++.+..
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~~~~--------~~~~~~----- 135 (164)
T d1yzqa1 71 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGE--------RKAKEL----- 135 (164)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHH--------HHHHHT-----
T ss_pred hccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhhhhhHHHHH--------HHHHHc-----
Confidence 68999999988864321122345555555555443 689999999998655554444322 222211
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+++.+.+|+. ++.+ +.++++.|...+++
T Consensus 136 ------~~~~~e~SAk----~g~~-----------v~e~f~~i~~~l~g 163 (164)
T d1yzqa1 136 ------NVMFIETSAK----AGYN-----------VKQLFRRVAAALPG 163 (164)
T ss_dssp ------TCEEEECCTT----TCTT-----------HHHHHHHHHHHSCC
T ss_pred ------CCEEEEecCC----CCcC-----------HHHHHHHHHHhhCC
Confidence 1465555553 4443 78899888887653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.2e-16 Score=125.07 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+|+|.+|||||||+|++++.+. .....+..+..........++. .+.+|||||..+...... ..+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~---~~~----- 74 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR---SYY----- 74 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHH---HHH-----
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHH---HHh-----
Confidence 38999999999999999999998753 2222333444444445556665 788999999744322111 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+.+..... .|+++|+||+|+.+......+
T Consensus 75 -~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~ 130 (166)
T d1z0fa1 75 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE 130 (166)
T ss_dssp -HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred -cCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccHHH
Confidence 48999999998865322123334555665554433 689999999998655544443
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.2e-15 Score=124.24 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+... .....+..+...........+ ..+.+|||||..+. ......++
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~-------~~~~~~~~-- 75 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY-------RTITTAYY-- 75 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTT--
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCC-CcccccccccceeeEEEEeecceEEEEEEECCCchhh-------HHHHHHHH--
Confidence 8999999999999999999997653 222222233333333344443 47899999997321 11112222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++|++|+|++++....-..-..+...+....... .++++|+||+|+......+.++
T Consensus 76 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~v~~~~ 132 (169)
T d3raba_ 76 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSER 132 (169)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGGCCSCHHH
T ss_pred hcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccccccchhh
Confidence 68999999988764321122233444444443332 6889999999986555544443
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=9.3e-16 Score=124.44 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.+||+|+|.+|||||||+|++++... .....++..........++|. .+.++||+|..+.......+ .
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~-------~ 73 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY-------S 73 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC--CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGG-------T
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCC--CcccCcceecccceEEecCcEEEEeeecccccccccccccchh-------h
Confidence 458999999999999999999987652 222222323333445556665 67889999997665443321 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..+|++++|++++...--..-..++..+.+..+.. ..|+++|+||+|+......+.++
T Consensus 74 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~ 131 (167)
T d1xtqa1 74 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEE 131 (167)
T ss_dssp --SSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHH
T ss_pred --hhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHH
Confidence 58999999998865321123345666666665532 26899999999986655555554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=1.9e-16 Score=133.38 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=84.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc-----------ccccC-----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-----------VTVST-----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~-----------~~~~~-----~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
.+++|+++|+.++|||||+++|+.... ..... ..+.|.+.....+++++.+++|+||||..++
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df- 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh-
Confidence 359999999999999999999973210 00011 1256777777788899999999999998542
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
-.+....+ ..+|++|+|++.+. .+..++.+.+..+... |- +++|+++||+|+.+
T Consensus 81 --~~~~~~~~------~~aD~avlVvda~~-Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 81 --IKNMITGA------AQMDGAILVVSAAD-GPMPQTREHILLARQV-GV---PYIVVFMNKVDMVD 134 (204)
T ss_dssp --HHHHHHHH------TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCC
T ss_pred --HHHHHHHH------HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCC
Confidence 22333333 58999999977754 5778888877777654 31 35888899999863
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.5e-15 Score=123.66 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.+||+++|.+|||||||+|++++... .....++..........+++. .+.+|||+|..+...... ..+
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~---- 74 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMRE---QYM---- 74 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHH---HHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC--CcccCcccccceeeeeeeccccccccccccccccccccccc---ccc----
Confidence 459999999999999999999997652 233334444555555566664 689999999865432221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..+|++++|++++.......-..++..+.+..+.. ..|+|+|+||+|+......+.++
T Consensus 75 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~~~ 132 (171)
T d2erya1 75 --RTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQEE 132 (171)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCHHH
T ss_pred --cccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchHHH
Confidence 37899999988764321122244555555544432 26899999999986555555544
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.1e-15 Score=124.08 Aligned_cols=126 Identities=15% Similarity=0.072 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+++||+|+|.+|||||||+|++.+... .....+.............++ ..+.+|||+|..+.......+ +
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~---- 74 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY---Y---- 74 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHH---H----
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccccccccccccccceeeeecCCchhhhHHHHHH---H----
Confidence 469999999999999999999997753 222222222222222333333 357899999986544433322 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++.......-..+...+.+..... .|+++|+||+|+......+.+
T Consensus 75 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~ 130 (167)
T d1z0ja1 75 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER 130 (167)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH
T ss_pred --hhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccccchhHH
Confidence 68999999988864322222234444455544433 799999999998655444444
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.66 E-value=1.4e-15 Score=123.80 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+|+|.+|||||||+|++++... .....++...........++. .+.+|||||..+..... ..++
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~-------~~~~- 73 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR-------DNYF- 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHH-------HHHH-
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC--CcccCCccccccccccccccccccccccccccccchhhhh-------hhcc-
Confidence 37999999999999999999987652 223333333333444556665 67899999985432111 1122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++|++++|++++.......-..+++.+.+..+. ...|+++|+||+|+......+.++
T Consensus 74 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~~ 131 (168)
T d1u8za_ 74 -RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE 131 (168)
T ss_dssp -HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH
T ss_pred -cccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHHH
Confidence 3789999998876422112234566666655432 226899999999986554445443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.7e-15 Score=122.76 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=81.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|||||||+|++++... .....++.+.......+..++. .+.++||||..+........ +
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~---~------ 74 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY---Y------ 74 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH---H------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHH---h------
Confidence 8999999999999999999998653 2222333444444445556664 68899999986544444322 2
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++...-...-..++..+.+.++.+ .|+++|+||+|+.+...
T Consensus 75 ~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~~~ 126 (175)
T d2f9la1 75 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRA 126 (175)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCC
T ss_pred hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeeccccccc
Confidence 58999999988864322233455667777766544 59999999999864433
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.3e-15 Score=121.15 Aligned_cols=126 Identities=17% Similarity=0.091 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+++||+++|.+|||||||+|++++... .....++...........++. .+.+|||+|...... ......
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~~---- 72 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---MRDLYI---- 72 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---HHHHHH----
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCC--CCccCCceeeeeeeeeecCcceEeeccccCCCcccccc---chHHHh----
Confidence 569999999999999999999998753 223333333444444455554 678899999744321 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++....-..-..+...+...... ...|+++|+||+|+........+
T Consensus 73 --~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~ 129 (167)
T d1kaoa_ 73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS 129 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred --hcccceeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhcccchHH
Confidence 4789999998886432112234455455444332 22689999999998655444443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=7.5e-16 Score=131.72 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=76.8
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE------------------EEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------------------VSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~------------------~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
|+|+|++++|||||+|+|++...... ...+.+.+... .....++..+.++||||..+....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEeCCCccHHHHHHHHHhhcchhe-ecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence 99999999999999999998643221 11122211111 112345668999999998654332
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
... ....+|++++|+++.. ++...+...+..+... + .|+|+|+||+|+...+
T Consensus 87 ~~~---------~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 87 RKR---------GGALADLAILIVDINE-GFKPQTQEALNILRMY-R----TPFVVAANKIDRIHGW 138 (227)
T ss_dssp BCS---------SSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSTTC
T ss_pred chh---------cccccceEEEEEeccc-CcccchhHHHHHhhcC-C----CeEEEEEECccCCCch
Confidence 211 1157899999977653 5888888888887765 2 7999999999986544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.66 E-value=8.1e-16 Score=128.53 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC------c---------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEK------A---------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~------~---------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
.+++|+++|..++|||||+|+|++.- . .......+.|.+.....+.+.++.+.++||||..+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~--- 78 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHH---
Confidence 35999999999999999999998520 0 00111223344555566778899999999999732
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhh
Q 021685 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~ 182 (309)
+...+.+. ...+|++|+|++.+. .+.+++.+.+..+... |. +++|+++||+|+.+. ++..+...
T Consensus 79 ----f~~~~~~~--~~~aD~allVVda~~-G~~~QT~~~~~~a~~~-~~---~~iIv~iNK~D~~~~-----~~~~~~i~ 142 (196)
T d1d2ea3 79 ----YVKNMITG--TAPLDGCILVVAAND-GPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQD-----SEMVELVE 142 (196)
T ss_dssp ----HHHHHHHT--SSCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCSC-----HHHHHHHH
T ss_pred ----HHHHHHHH--HhhcCeEEEEEEcCC-CCchhHHHHHHHHHHh-cC---CcEEEEEeccccccc-----HHHHHHHH
Confidence 22222222 268899999977654 5777888777776654 32 589999999998632 12222223
Q ss_pred HHHHHhhcccccccccccccCCCcEEEeccc
Q 021685 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 183 ~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
..++.++... ++ ....+|++++|+.
T Consensus 143 ~~i~~~l~~~-~~-----~~~~~pii~iSa~ 167 (196)
T d1d2ea3 143 LEIRELLTEF-GY-----KGEETPIIVGSAL 167 (196)
T ss_dssp HHHHHHHHHT-TS-----CTTTSCEEECCHH
T ss_pred HHHHHHHHHh-CC-----CcccCEEEEEEcc
Confidence 4555555432 12 1234899998874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.6e-15 Score=122.92 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=79.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+|+|.+|||||||+|++++... .....+..+.......+..++ ..+.||||||..+....... ++
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~-------~~-- 76 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY-- 76 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG--
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCC-CCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHH-------Hh--
Confidence 8999999999999999999997652 222222222333333444444 46889999998665443322 11
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..+|++|+|++++.......-..+...+.+..... .|+++|.||+|+.+....+.++
T Consensus 77 ~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~ 133 (194)
T d2bcgy1 77 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV 133 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH
T ss_pred ccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccchhHHH
Confidence 68999999988764221122233444444443333 6899999999987655554443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=6.2e-15 Score=119.93 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=85.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++++... .....++...........++ ..+.+|||+|..........+ +
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~---- 73 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIF--VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY---M---- 73 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHH---H----
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC--CcccCcceeeccccccccccccccccccccccccccccchhhh---h----
Confidence 469999999999999999999998653 22222222233333344455 467899999996654443322 2
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++|++++|++++.. ++.. -..++..+.+..+.. ..|+|+|+||+|+......+.++.
T Consensus 74 --~~~~~~llv~d~~d~~Sf~~-~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~e~~ 132 (169)
T d1x1ra1 74 --RTGDGFLIVYSVTDKASFEH-VDRFHQLILRVKDRE-SFPMILVANKVDLMHLRKVTRDQG 132 (169)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTSS-CCCEEEEEECTTCSTTCCSCHHHH
T ss_pred --hhccEEEEecccccchhhhc-cchhhHHHHhhcccc-CccEEEEecccchhhhceeehhhH
Confidence 478999999988643 2322 345677776665432 268999999999976666655543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.8e-15 Score=120.04 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=80.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+|+|.+|||||||+|++++.+. .....+..+...........+ ..+.++||+|............
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~--------- 73 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY--------- 73 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH---------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCC-CCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHh---------
Confidence 7999999999999999999998753 222233333333443444444 4789999999976555543322
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+..+.+ .|+++|.||+|+........
T Consensus 74 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~~~~~ 128 (173)
T d2a5ja1 74 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKR 128 (173)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCH
T ss_pred hccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhhhhHH
Confidence 58899999988865322233345666666655544 68999999999754443333
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.3e-15 Score=121.52 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|||||||++++++... .....+..+...........+ ..+.+|||||..+....... ++
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-------~~- 76 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQF-HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPM-------YY- 76 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHH-------HH-
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHH-------Hh-
Confidence 58999999999999999999997652 222223333333333444444 46889999998543322221 22
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++|++++|++++..........+...+.+..... .|+++|.||+|+......+.++
T Consensus 77 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~e~ 133 (170)
T d1r2qa_ 77 -RGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE 133 (170)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH
T ss_pred -hCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeecccccccccccccHHH
Confidence 68999999988764322233344555555555444 6899999999986555555443
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.6e-15 Score=120.17 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=77.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|||||||++++++.+.......+..+..........+|. .+.+|||||........ ..+.
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~-------~~~~- 77 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT-------HAYY- 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG-
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHH-------HHhh-
Confidence 4899999999999999999998765322222233334455555666665 67899999984432211 1112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++|++++|++++...-...-..+...+.+..+.. .++++|.||+|+......+.++
T Consensus 78 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~~~ 134 (170)
T d2g6ba1 78 -RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED 134 (170)
T ss_dssp -GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH
T ss_pred -cCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccHHH
Confidence 58899999988754221122233333343443332 6899999999987665555543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.7e-15 Score=120.82 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+|+|.+|||||||+++++.... .....++............+ ..+.+|||+|.......... +
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~-------~- 77 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL-------S- 77 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG-------G-
T ss_pred cEEEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhh-------c-
Confidence 358999999999999999999997652 23333333333444444444 36789999998654433322 1
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++|++++|++++... +......+...+... ..+ .|+++|+||+|+.+
T Consensus 78 -~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~--~~~ilvgnK~Dl~~ 127 (185)
T d2atxa1 78 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPFLLIGTQIDLRD 127 (185)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--CCEEEEEECTTSTT
T ss_pred -ccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCC--CCeeEeeecccccc
Confidence 15899999999886532 333333455555444 333 68999999999863
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.3e-15 Score=119.96 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|||||||++++++... .....+.............++ ..+.+|||+|..+...... .+
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~~-- 72 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGP-------IY-- 72 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------C-------CS--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccchheeeeccCCccceeeeeccCCcceecccch-------hh--
Confidence 48999999999999999999997653 222223233333333444444 4789999999854322211 11
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
..++|++++|++++.. ++ ..-..+++.+....... .++++|+||+|+......+.++
T Consensus 73 ~~~~~~~i~v~d~~~~~Sf-~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~~e 130 (167)
T d1z08a1 73 YRDSNGAILVYDITDEDSF-QKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE 130 (167)
T ss_dssp STTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH
T ss_pred ccCCceeEEEEeCCchhHH-Hhhhhhhhhcccccccc--cceeeeccccccccccccchHH
Confidence 2689999999888643 23 22234455444443333 6889999999987555555544
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.4e-15 Score=122.73 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
|||+++|.+|||||||+|++++.+... ...+..+........... ...+.++||||..+..... ..+
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~~-- 72 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG-------VAF-- 72 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC--
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCC-ccCcccccceeeeeeeecCcccccceeeccCCchhhhhHH-------HHH--
Confidence 799999999999999999999765322 112222222222222222 3468999999974322211 111
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.......-..++..+.+..+. ....|+++|+||+|+..
T Consensus 73 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~ 126 (175)
T d1ky3a_ 73 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126 (175)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhh
Confidence 26899999998876432113334566666665442 12368999999999854
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.9e-14 Score=116.52 Aligned_cols=118 Identities=21% Similarity=0.179 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.++||+++|.+|||||||+|++++... .....++............+. .+.+||++|..... ......+
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~---- 72 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---AMRDQYM---- 72 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH---HHHHHHH----
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCC--CCccCCccceeeccceeeeceeeeeeeeeccCccccc---cchhhhh----
Confidence 359999999999999999999998752 222222222333333444443 68899999984431 1111112
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..++..+.+..+.. ..|+++|+||+|+.
T Consensus 73 --~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~ 121 (166)
T d1ctqa_ 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLA 121 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCS
T ss_pred --hcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccc
Confidence 47899999988865332233456777777665432 26899999999985
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.62 E-value=4.5e-15 Score=122.00 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=77.3
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021685 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+++++-... +.+||+++|.+|||||||++++.+.......+ |...........+..+.+|||||..........
T Consensus 6 ~~~~~l~~~~-k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 6 SMFDKLWGSN-KELRILILGLDGAGKTTILYRLQIGEVVTTKP----TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp HHHGGGTTCS-SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS----STTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred HHHHHHhCCC-ceEEEEEECCCCCCHHHHHHHHhcCCCCcccc----ccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 3444544433 46999999999999999999998876433222 233334455678899999999998654433321
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+ ...+|++++|++.+..........++..+.+... ....|+++|+||+|+.
T Consensus 81 -------~--~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~ 131 (182)
T d1moza_ 81 -------Y--YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP 131 (182)
T ss_dssp -------T--TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred -------h--hccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccc
Confidence 1 1589999999887542211222233322222111 1236999999999985
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.9e-15 Score=119.98 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|||||||+|++.+.+. .....+..+..........++ ..+.+|||||..+. . .....+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~----~~~~~~-- 74 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF---R----SVTRSY-- 74 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG---H----HHHHTT--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccceeeEEEEecCcceeEEEEECCCchhh---h----hhHHHH--
Confidence 38999999999999999999987653 222222222222222333333 36899999997321 1 111222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
...+|++++|++++.......-..++..+.+..+.+ .|+++|+||+|+........
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~~~~~~ 130 (174)
T d2bmea1 75 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTF 130 (174)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCH
T ss_pred hhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccchhchhh
Confidence 268999999988764321122334555555554443 69999999999854444333
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=2e-14 Score=116.27 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++.+. .....+..+.......+..++. .+.+|||||..........+ +
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------ 72 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y------ 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHH---H------
Confidence 7999999999999999999998753 3333344444455555555654 56789999986544443322 2
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..+...+....... .+++++.+|.|..
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~i~~~~k~d~~ 120 (166)
T d1g16a_ 73 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 120 (166)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred hcCCEEEEEEECCCccCHHHHHhhhhhhhccccCc--ceeeeecchhhhh
Confidence 68999999988764321111222333344433322 5788999999874
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.61 E-value=5e-15 Score=119.74 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=74.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
++||+++|.+|+|||||+|+|.+... .. .. .+|..........++..+.+|||||..... .....+. .
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~-~~-~~-~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~--~ 69 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQF-NE-DM-IPTVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYC--R 69 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CC-SC-CCCCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHH--T
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCC-CC-cc-cccceeeeeeeeeeeEEEEEeecccccccc-------ccccccc--c
Confidence 59999999999999999999998653 22 22 224444444566788999999999962211 1112222 6
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++++.. ++... ..++..+.+... ....|+++|+||.|+.
T Consensus 70 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~ 117 (164)
T d1zd9a1 70 GVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQ-LQGIPVLVLGNKRDLP 117 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred ccchhhcccccccccccchh-hhhhhhhhhhhc-ccCCcEEEEEeccccc
Confidence 89999999887542 23222 223333322211 1226999999999985
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.3e-14 Score=117.62 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.++||+++|.+|||||||++++++... .....++...........+ ...+.+||++|.......... .+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~---- 72 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL---YM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHH---HH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCcccccccccc---cc----
Confidence 469999999999999999999997753 2222222222233333333 347899999998654433222 12
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++.....+.-..++..+.+..+.. ..|+++|+||+|+......+.+
T Consensus 73 --~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~~~~~ 129 (167)
T d1c1ya_ 73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDERVVGKE 129 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS-CCCEEEEEECTTCGGGCCSCHH
T ss_pred --cccceeEEeeeccchhhhHhHHHHHHHHHHhcCCC-CCeEEEEEEecCcccccccchh
Confidence 47899999988865322233345666666554421 2689999999998644444443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.1e-14 Score=116.05 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=79.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|+|||||+|++.+.........+.++.+........++. .+.+||+||... .++. +.. ..
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g----~e~~---~~~-~~ 74 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG----ENEW---LHD-HC 74 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH----HHHH---HHH-CC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc----cccc---ccc-cc
Confidence 4899999999999999999999876433333334444444445555555 578899886521 1111 211 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
...+|++++|++++...--..-..+...+....+ ....|+++|+||+|+......+.++
T Consensus 75 ~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~ 133 (172)
T d2g3ya1 75 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE 133 (172)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH
T ss_pred ccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHH
Confidence 3689999999888642211122334444443322 2237999999999987555555544
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.2e-15 Score=121.80 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=74.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||.......... +
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-------~-- 72 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG-------Y-- 72 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGG-------G--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCC-Ccccccceeccccccccccccccccccccccccccccceecch-------h--
Confidence 48999999999999999999997652 222122222233333444444 57899999997443322221 1
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++|++++|++++.. ++... ..++..+.+... ..|+++|+||+|+...
T Consensus 73 ~~~~~~~ilv~d~~~~~Sf~~~-~~~~~~~~~~~~---~~piilvgnK~Dl~~~ 122 (170)
T d1i2ma_ 73 YIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE---NIPIVLCGNKVDIKDR 122 (170)
T ss_dssp TTTCCEEEEEEETTSGGGGTTH-HHHHHHHHHHHC---SCCEEEEEECCCCSCS
T ss_pred cccccchhhccccccccccchh-HHHHHHHhhccC---CCceeeecchhhhhhh
Confidence 2689999999998653 34433 446666655543 2799999999998543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.2e-14 Score=117.42 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=98.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++.+... .....+..+..........++. .+.+|||||..+.......+ +
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~----- 77 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY---Y----- 77 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHH---H-----
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC-CCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHH---H-----
Confidence 58999999999999999999998653 2222233333333444455544 68999999986544332221 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++++|++++.......-..++..+.+. ......+++++.||.|.. ....+.++. +++.+..
T Consensus 78 -~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~-~~~v~~~~~--------~~~~~~~---- 142 (177)
T d1x3sa1 78 -RGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKE-NREVDRNEG--------LKFARKH---- 142 (177)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSS-SCCSCHHHH--------HHHHHHT----
T ss_pred -hcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccc-cccccHHHH--------HHHHHHC----
Confidence 6899999998875422112223344444332 223336888999999974 333333322 2233221
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.++++.+++. ++.+ +.++++.+...+...
T Consensus 143 -------~~~~~e~Sa~----tg~g-----------v~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 143 -------SMLFIEASAK----TCDG-----------VQCAFEELVEKIIQT 171 (177)
T ss_dssp -------TCEEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred -------CCEEEEEeCC----CCCC-----------HHHHHHHHHHHHccC
Confidence 1466655542 4443 788888877777654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.7e-15 Score=119.77 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+|+|.+|+|||||++++.+... .....++...........++. .+.+|||+|.......... ++
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-------~~-- 71 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPL-------SY-- 71 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG-------GC--
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--CCCcCCceeeeccccccccccceeeeccccCccchhcccchh-------hc--
Confidence 6899999999999999999998753 222222222333333444444 6899999998544333221 12
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++... +......+...+... +.+ .|+++|+||+|+..
T Consensus 72 ~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~piilvgnK~Dl~~ 120 (177)
T d1kmqa_ 72 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPN--VPIILVGNKKDLRN 120 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECGGGTT
T ss_pred ccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCC--CceEEeeecccccc
Confidence 6899999999886432 333333444444443 333 69999999999853
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=4.4e-15 Score=121.23 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+++|++... .....+..+..........++. .+.+|||||.......... + .
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~-------~--~ 76 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------Y--Y 76 (173)
T ss_dssp EEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCT-------T--T
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHH-------h--c
Confidence 7999999999999999999998652 2222222333444455566664 5778999997543322211 1 2
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++....-..-..+.+.+....... .|+++|.||.|.........+
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~~ 132 (173)
T d2fu5c1 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE 132 (173)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH
T ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHHH
Confidence 68999999988754211122233445554443333 689999999998765554444
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.8e-14 Score=114.99 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
++||+++|.+|+|||||+|++.+... .....++...........++. .+.+|||+|..... .....+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~~~----- 70 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI----QREGHM----- 70 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH----HHHHHH-----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeccccccccccccceEEEEeecccccccc----cchhhh-----
Confidence 58999999999999999999998652 223333323333334445554 68899999984321 111112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
.++|++++|++++...-...-..+...+..... ....|+++|+||+|+......+.++.
T Consensus 71 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e~ 129 (168)
T d2atva1 71 -RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEG 129 (168)
T ss_dssp -HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred -cccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHHH
Confidence 378999999888642211111223333333322 22379999999999865555555543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.5e-15 Score=120.73 Aligned_cols=165 Identities=15% Similarity=0.253 Sum_probs=101.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--hcC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~~~ 118 (309)
.|+++|.+|||||||+|+|+|.+.+.++....++..........+...+.++|+||..... ............ ...
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhccccchh
Confidence 5899999999999999999999887777777777777777777788888999999984311 111111111111 124
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccccc
Q 021685 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKK 198 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 198 (309)
.+++++++.+.. ........+...+.+. ..+.++|+||+|.... .++. ....+.+....
T Consensus 85 ~~~~~l~~~d~~--~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~~~----~~~~-----~~~~~~~~~~~----- 143 (179)
T d1egaa1 85 DVELVIFVVEGT--RWTPDDEMVLNKLREG-----KAPVILAVNKVDNVQE----KADL-----LPHLQFLASQM----- 143 (179)
T ss_dssp CEEEEEEEEETT--CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCC----HHHH-----HHHHHHHHTTS-----
T ss_pred hcceeEEEEecC--ccchhHHHHHHHhhhc-----cCceeeeeeeeeccch----hhhh-----hhHhhhhhhhc-----
Confidence 567777775443 3334444444444322 2689999999987532 1111 11112222211
Q ss_pred ccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021685 199 DIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 199 ~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
...|++++|+. ++.+ +++|.+.|.+.+++.
T Consensus 144 ----~~~~~~~vSA~----~g~g-----------i~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 144 ----NFLDIVPISAE----TGLN-----------VDTIAAIVRKHLPEA 173 (179)
T ss_dssp ----CCSEEEECCTT----TTTT-----------HHHHHHHHHTTCCBC
T ss_pred ----CCCCEEEEeCc----CCCC-----------HHHHHHHHHHhCCCC
Confidence 12578887763 3333 789998888776554
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.58 E-value=1.6e-14 Score=117.66 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+++||+++|.+|||||||+|++.+...... .+|..............+.+|||||.... .. ....+
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---~~----~~~~~-- 76 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKI---RP----LWRHY-- 76 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE----EEETTEEEEEEEETTEEEEEEEESCCGGG---HH----HHGGG--
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc----cceeeeeEEEeeccceeeEEecCCCcchh---hh----HHHhh--
Confidence 3579999999999999999999997653221 12333444555677889999999998432 11 11122
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+... +......+...+.... ....|+++|+||+|+.
T Consensus 77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~--~~~~piiiv~NK~Dl~ 126 (173)
T d1e0sa_ 77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLP 126 (173)
T ss_dssp TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTST
T ss_pred hcccceEEEEEecccchhHHHHHHHHHHHhhhcc--cccceeeeeeeccccc
Confidence 26899999998876432 2222222222222111 1237999999999985
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.4e-14 Score=117.83 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=74.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
|||+|+|.+|||||||+|++++.+. .....+..+...........+ ..+.++||||..+........ .
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---------~ 72 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF---------Y 72 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGG---------G
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccccc---------c
Confidence 7999999999999999999998653 222122222222233333333 478899999986544333211 1
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++.+.......-..+++.+...... ....|+++|+||+|+.
T Consensus 73 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~ 124 (184)
T d1vg8a_ 73 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 124 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred cCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence 5889999998875422112234566666555432 1125899999999985
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.57 E-value=2.6e-14 Score=118.94 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=96.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc--cCCCCCCCeeEEEE-----------------------eeeCCeEEEEE
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVS-----------------------RSRAGFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~-----------------------~~~~g~~l~li 92 (309)
..++|+++|..++|||||+|+|+|...... ....+.|....... ....+..+.++
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence 468999999999999999999998532111 11122222211110 01123458999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021685 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
||||.. .+...+.+.+ ..+|++++|++...........+.+..+... +. +++++++||+|+.+
T Consensus 84 DtPGh~-------~f~~~~~~~~--~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d---- 146 (195)
T d1kk1a3 84 DAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD---- 146 (195)
T ss_dssp ECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC----
T ss_pred ccchhh-------hhhHHhhccc--ccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchh----
Confidence 999962 2222222222 4789999997765432334445555544443 32 46889999999852
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..+.. ...+.+.+++... ....+|++++|+. ++.+ +++|++.|...++
T Consensus 147 -~~~~~-~~~~~~~~~~~~~--------~~~~~~iIpiSA~----~G~n-----------i~~Ll~~I~~~iP 194 (195)
T d1kk1a3 147 -KEKAL-ENYRQIKEFIEGT--------VAENAPIIPISAL----HGAN-----------IDVLVKAIEDFIP 194 (195)
T ss_dssp -HHHHH-HHHHHHHHHHTTS--------TTTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSC
T ss_pred -hHHHH-HHHHHHHHHhccc--------cCCCCeEEEEECC----CCCC-----------HHHHHHHHHHHCc
Confidence 22221 1124455555432 1124789988773 4443 7889888877554
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.9e-14 Score=118.44 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.+||+|+|.+|||||||+|++++... .....++...........++. .+.+||++|.......... +
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f--~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-------~- 73 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------S- 73 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGG-------G-
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCC--CcccccceeeceeeeeeccCcceEEEeecccccccchhhhhh-------c-
Confidence 469999999999999999999998752 223333333333334444444 6789999998544333221 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++......+...+... ... .|+++|+||+|+.+
T Consensus 74 -~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~--~piilvgnK~Dl~~ 123 (183)
T d1mh1a_ 74 -YPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPN--TPIILVGTKLDLRD 123 (183)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECHHHHT
T ss_pred -ccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCC--CcEEEEeecccchh
Confidence 1689999999888642 2333333455555544 332 69999999999853
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=6.3e-14 Score=113.69 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||++++++.+... ...+..+..........++ ..+.+|||+|..+...... .++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~-~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~-------~~~- 73 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAP-------MYY- 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHH-------HHH-
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccceeeccccccccccccccccccCCchhHHHHHH-------HHH-
Confidence 5899999999999999999999876322 1122222222333445555 4789999999854322221 122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++..........+...+....... .++++|+||+|+.+
T Consensus 74 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~ 122 (170)
T d1ek0a_ 74 -RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQ 122 (170)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred -hccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeeccccccc
Confidence 68999999988864321122333444444443332 68999999999853
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.1e-14 Score=115.38 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=75.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|||||||++++++... .....++............+. .+.+|||+|..+....... +
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-------~-- 71 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL-------S-- 71 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG-------G--
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC--CCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhh-------c--
Confidence 58999999999999999999997652 222223333333334444544 6899999998654333221 1
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++++.. ++......+...+... ..+ .|+++|+||+|+.
T Consensus 72 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~i~lvgnK~Dl~ 120 (191)
T d2ngra_ 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPK--TPFLLVGTQIDLR 120 (191)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CCEEEEEECGGGG
T ss_pred ccccceeecccccchHHHHHHHHHHHHHHHhhc-CCC--CceEEEecccccc
Confidence 1589999999998643 2333333344444433 333 6899999999985
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.55 E-value=2.1e-13 Score=114.35 Aligned_cols=166 Identities=18% Similarity=0.158 Sum_probs=94.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC--CCCe--eEEE--------------------------EeeeCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS--EGPR--PVMV--------------------------SRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~--~t~~--~~~~--------------------------~~~~~g 86 (309)
..+++|+++|..++|||||+|+|++........... .+.. .... .....+
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 456999999999999999999999843211110000 0000 0000 001123
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc-ChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-DNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+.+.++||||..+ +...+... ...+|++|+|++... .+ ....++.+..+.. +|. +++|+++||+|
T Consensus 86 r~~~iiD~PGH~d-------f~~~~~~~--~~~ad~ailvVda~~-gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK~D 151 (205)
T d2qn6a3 86 RRISFIDAPGHEV-------LMATMLSG--AALMDGAILVVAANE-PFPQPQTREHFVALGI-IGV---KNLIIVQNKVD 151 (205)
T ss_dssp EEEEEEECSCHHH-------HHHHHHHT--SSCCSEEEEEEETTS-CSSCHHHHHHHHHHHH-TTC---CCEEEEEECGG
T ss_pred EEEEEeccchHHH-------HHhhhhcc--eeccccccccccccc-cccchhHHHHHHHHHH-cCC---ceeeeccccCC
Confidence 4689999999832 22222222 257899999977654 34 4444555544443 343 58899999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+.+ .++... ....+.+.+... ....+|++++|+. ++.+ +++|++.|...++
T Consensus 152 l~~-----~~~~~~-~~~~~~~~l~~~--------~~~~~p~ipiSA~----~g~n-----------I~~L~e~i~~~ip 202 (205)
T d2qn6a3 152 VVS-----KEEALS-QYRQIKQFTKGT--------WAENVPIIPVSAL----HKIN-----------IDSLIEGIEEYIK 202 (205)
T ss_dssp GSC-----HHHHHH-HHHHHHHHHTTS--------TTTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSC
T ss_pred Ccc-----chHHHH-HHHHHHHHhccc--------cCCCCeEEEEeCC----CCCC-----------hHHHHHHHHhhCC
Confidence 863 222221 123334444322 1234899998873 4433 7889888877654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.8e-14 Score=117.54 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=89.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~liDTPG~~~~~~~~~~ 106 (309)
-+||+++|.+|||||||+|++++... .....+..+..........+ ...+.++||||.. +
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e-------~ 76 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------R 76 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------H
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCC-CCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcch-------h
Confidence 38999999999999999999998653 11111111111112222211 2468999999972 1
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCCCCCCCHHHHHHhhhHH
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~ 184 (309)
+......++ .++|++++|++++... .-..+..++.+... .....|+++|+||+|+......+.++.
T Consensus 77 ~~~~~~~~~--~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~------- 144 (186)
T d2f7sa1 77 FRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA------- 144 (186)
T ss_dssp HHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH-------
T ss_pred hHHHHHHHH--hcCCEEEEEEeccccc---cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHH-------
Confidence 112222233 6899999998875421 11112222222211 112257899999999865555444432
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021685 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+++.+.. ++|++.+|+. +|.+ ++++++.+...+.
T Consensus 145 -~~~~~~~-----------~~~~~e~Sak----~~~~-----------i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 145 -RELADKY-----------GIPYFETSAA----TGQN-----------VEKAVETLLDLIM 178 (186)
T ss_dssp -HHHHHHT-----------TCCEEEEBTT----TTBT-----------HHHHHHHHHHHHH
T ss_pred -HHHHHHc-----------CCEEEEEeCC----CCCC-----------HHHHHHHHHHHHH
Confidence 2222221 2577767663 4443 6777777666554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.54 E-value=3.8e-13 Score=109.22 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+++||+|+|.+|||||||+|+|.+.+..........+ .......+..+.++|++|........... .
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~------ 80 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSWNTY---Y------ 80 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS----CEEEEETTEEEEEEECCC----CGGGHHH---H------
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccee----EEEEeecceEEEEeccccccccccchhhh---h------
Confidence 5699999999999999999999998765444433322 23345577899999999985544433322 1
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++.+.................. ......|+++|+||+|+...
T Consensus 81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~ 131 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKEC 131 (177)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTC
T ss_pred ccceeeeeecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEccccccc
Confidence 5789999997765322111122222222111 12233799999999998533
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3e-13 Score=110.07 Aligned_cols=124 Identities=18% Similarity=0.129 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+|+|.+|||||||+|++++... ......+. ...........+. .+.++||+|..+. . ... ...
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---~-----~~~-~~~ 75 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF---R-----SLR-TPF 75 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC--CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG---H-----HHH-GGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--CCccccceeeeeeeeeeeecCceeeEeeecccCccee---h-----hhh-hhh
Confidence 6999999999999999999997652 22222222 2222333444554 5789999997332 1 111 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCCCCCCCHH
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
...+|++++|++.+..........+++.+.+.... ....|+++|+||+|+. ....+.+
T Consensus 76 ~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~ 135 (174)
T d1wmsa_ 76 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTE 135 (174)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHH
T ss_pred hhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHH
Confidence 26889999998876422113334566666655431 1236899999999985 3344444
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=4e-13 Score=109.61 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=90.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-hh-
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FL- 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~-~~- 115 (309)
..++|+++|.+|||||||+|+|++.+........+++...........+......++++................. ..
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE 94 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhh
Confidence 5699999999999999999999998765555554555555554555566666666666654433333322221211 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021685 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.....+.++++.+... .....+...+..+.... .++++++||+|+..+. + .....+.+++.+....
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~~~~-----~-~~~~~~~~~~~l~~~~-- 160 (188)
T d1puia_ 95 KRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDSN-----IAVLVLLTKADKLASG-----A-RKAQLNMVREAVLAFN-- 160 (188)
T ss_dssp HCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCHH-----H-HHHHHHHHHHHHGGGC--
T ss_pred hhhheeEEEEeecccc-cchhHHHHHHHHhhhcc-----ccccchhhhhhccCHH-----H-HHHHHHHHHHHHHhhC--
Confidence 1234444555544332 35556666666665542 6899999999986321 1 1112244555554321
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHH
Q 021685 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~ 243 (309)
...|++++|+. ++.+ +++|.+.|.+.
T Consensus 161 -------~~~~~i~vSA~----~g~G-----------id~L~~~i~~~ 186 (188)
T d1puia_ 161 -------GDVQVETFSSL----KKQG-----------VDKLRQKLDTW 186 (188)
T ss_dssp -------SCEEEEECBTT----TTBS-----------HHHHHHHHHHH
T ss_pred -------CCCcEEEEeCC----CCCC-----------HHHHHHHHHHH
Confidence 12688888773 4444 78888776543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=2.3e-13 Score=109.65 Aligned_cols=127 Identities=11% Similarity=0.103 Sum_probs=79.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|||||||+|++++...... ..+..+......... .....+.++|++|........ ...++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 73 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM------VQHYY- 73 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT------HHHHH-
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc-cCcccccccceeeeeeeccceEEEEEeccCchhhcccc------ceeee-
Confidence 38999999999999999999997653222 222222222222333 344578999999973221111 11122
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021685 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++|++++|++++... +. .-..++..+.+.... ...|+++|+||+|+..+...+.++
T Consensus 74 -~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~ 131 (165)
T d1z06a1 74 -RNVHAVVFVYDMTNMASFH-SLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDL 131 (165)
T ss_dssp -TTCCEEEEEEETTCHHHHH-THHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHH
T ss_pred -cCCCceEEEEEeehhhhhh-hhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHH
Confidence 6899999998886432 32 224466666555432 226999999999987555555543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.51 E-value=2.6e-13 Score=107.91 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=70.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|++|||||||+|+|++.+...... +..............+.++|+||.... .... ..+. ..
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~g~~~~---~~~~----~~~~--~~ 67 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDKI---RPLW----RHYF--QN 67 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCC----CSSCCEEEEECSSCEEEEEECCCCGGG---HHHH----HHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccc----ceeeEEEEEeeeeEEEEEecCCCcccc---hhhh----hhhh--cc
Confidence 689999999999999999999876422211 112223344567779999999998432 1111 1122 58
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+++++++++.+..........++..+..... ....++++|.||.|+...
T Consensus 68 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~~~ 116 (160)
T d1r8sa_ 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA 116 (160)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred ceeEEEEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccccc
Confidence 8999999877542211111222222222211 223689999999997543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=1.5e-13 Score=112.67 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=73.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|||||||+++++.... .....++...........++. .+.+|||+|.......... +
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~-- 70 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL-------S-- 70 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGG-------G--
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC--CCccCCceeecccccccccceEEeeccccccccccccccccc-------h--
Confidence 37999999999999999999997653 222222222333334444444 6789999998544332211 1
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..++|++++|++++.. ++......+...+... ..+ .|+++|+||+|+.
T Consensus 71 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~iilVgnK~Dl~ 119 (179)
T d1m7ba_ 71 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPN--TKMLLVGCKSDLR 119 (179)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CEEEEEEECGGGG
T ss_pred hhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCc--ceEEEEEeccccc
Confidence 2689999999998643 2323233344444333 333 6999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=6.5e-14 Score=116.94 Aligned_cols=120 Identities=15% Similarity=0.193 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+.+|+++|.+|||||||+|+|++.+.. +++|..........++..+.++||||...... .....+.... .
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~--~ 72 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRA--K 72 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHG--G
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchhh---HHHHHHHHHh--h
Confidence 468999999999999999999987642 34555556667778888999999999854322 2222222221 3
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHH----HHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 119 TIDVLLYVDRLDVY-RVDNLDKQIT----RAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l----~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+.++++++.... ........++ ..+......+ .|+++|+||+|+....
T Consensus 73 ~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 73 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTAR 127 (209)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTCC
T ss_pred hccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeecccccC
Confidence 55777777554321 1112222333 2223333232 7899999999986433
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5.3e-13 Score=109.09 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...+||+++|.+|||||||++++++.... ....++..........+|. .+.||||+|... .. .+
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~---~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----~~---~~--- 68 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQ---VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AK---FS--- 68 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCC---CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----HH---HH---
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCC---CcCCccceeEEEEeecCceEEEEEEeecccccc-----cc---cc---
Confidence 35699999999999999999999987632 2223334444445566775 588999999743 11 22
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcc-ccCcEEEEEecccCC
Q 021685 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~-~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++++...-...-..+...+....... ...|+++|+||.|+.
T Consensus 69 ---~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d 119 (175)
T d2bmja1 69 ---GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119 (175)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred ---cccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence 36899999999875321122334566665543321 225799999998874
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.49 E-value=2.9e-13 Score=114.90 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=93.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc----------ccC----------------------CCCCCCeeEEEEeeeC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VST----------------------FQSEGPRPVMVSRSRA 85 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~----------~~~----------------------~~~~t~~~~~~~~~~~ 85 (309)
+.+||+++|..++|||||+++|+...... .+. ..+.|...........
T Consensus 8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 87 (222)
T d1zunb3 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 87 (222)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence 56999999999999999999997321100 000 0112223334455567
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
++.+.|+||||..++ .......+ ..+|++++|+++.. .+.++..+.+..+.. +|- +++|+++||+|
T Consensus 88 ~~~~~iiD~PGH~df---v~~~~~g~------~~aD~ailVvda~~-G~~~Qt~e~~~~~~~-~gv---~~iiv~vNK~D 153 (222)
T d1zunb3 88 KRKFIIADTPGHEQY---TRNMATGA------STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMD 153 (222)
T ss_dssp SEEEEEEECCCSGGG---HHHHHHHH------TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTT
T ss_pred ceEEEEEeccchhhh---hhhhcccc------ccCceEEEEecccc-CcccchHHHHHHHHH-cCC---CEEEEEEEccc
Confidence 889999999999442 22222222 58999999977654 577777776655544 353 57999999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021685 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
+...++ +......+.+..++.+. ++. ...+|++++|+
T Consensus 154 ~~~~~~----~~~~~~~~~l~~~~~~~-~~~-----~~~i~~IPiSA 190 (222)
T d1zunb3 154 LNGFDE----RVFESIKADYLKFAEGI-AFK-----PTTMAFVPMSA 190 (222)
T ss_dssp TTTSCH----HHHHHHHHHHHHHHHTT-TCC-----CSEEEEEECCT
T ss_pred cccccc----eehhhhHHHHhhhhHhh-ccC-----CCceEEEEEEc
Confidence 864332 22222234555555432 222 22378888876
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.47 E-value=9.2e-13 Score=105.40 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=96.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+++||+++|.+|||||||+|++++.+...+ ..|..........++..+.++|++|.......... ..
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 70 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC---------YY 70 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGG---------GC
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcce----ecccceeeeeeccCceEEEEeeccccccccccchh---------hh
Confidence 369999999999999999999998864322 22444455556678889999999998443221111 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
..+|++++++++.................... .....++++|.||.|+..... ..+. ...+... +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~~~--~~~i--------~~~~~~~--~-- 135 (169)
T d1upta_ 71 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT--SSEM--------ANSLGLP--A-- 135 (169)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC--HHHH--------HHHHTGG--G--
T ss_pred hhhhhhhhhhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeecccccccc--HHHH--------HHHHHHH--H--
Confidence 57788888876643221122222222222221 122368899999999853322 2222 1212111 0
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021685 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
.....+|++.+|+. ++.+ ++++++.+...+.+
T Consensus 136 --~~~~~~~~~~~SA~----~g~g-----------v~e~~~~l~~~l~~ 167 (169)
T d1upta_ 136 --LKDRKWQIFKTSAT----KGTG-----------LDEAMEWLVETLKS 167 (169)
T ss_dssp --CTTSCEEEEECCTT----TCTT-----------HHHHHHHHHHHHHT
T ss_pred --HhcCCCEEEEEeCC----CCCC-----------HHHHHHHHHHHHHh
Confidence 01123678777763 4444 77888887776644
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2e-12 Score=114.22 Aligned_cols=140 Identities=19% Similarity=0.333 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhh-cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-----------------
Q 021685 23 TKLLELLGKLKQ-ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----------------- 84 (309)
Q Consensus 23 ~~l~~~~~~~~~-~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~----------------- 84 (309)
++|++.+.++.. ......+|+|+|..++|||||||+|+|.+..+++..+ +|..+....+..
T Consensus 9 ~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (299)
T d2akab1 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFT 87 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC-SCSSCEEEEEEECSSCEEEETTSTTCCBC
T ss_pred HHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc-cccCCEEEEEeccccceeEEEeCCCCeeC
Confidence 445555555532 2234568999999999999999999999865555543 443333221110
Q ss_pred -----------------------------------CCeEEEEEeCCCCCCCCCCc------HHHHHHHHHhhhcCCCc-E
Q 021685 85 -----------------------------------AGFTLNIVDTPGLIEGGYVN------YHAIQLIKRFLLNKTID-V 122 (309)
Q Consensus 85 -----------------------------------~g~~l~liDTPG~~~~~~~~------~~~~~~i~~~~~~~~~d-~ 122 (309)
.-..+.||||||+......+ ..+...+..++. .++ +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~--~~~~~ 165 (299)
T d2akab1 88 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCL 165 (299)
T ss_dssp CHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEE
T ss_pred CHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhc--Cccce
Confidence 11247899999997643222 123344445553 444 5
Q ss_pred EEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021685 123 LLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 123 il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
+++|.+... .++..+ ..+++.+... . .++++|+||+|..++.+
T Consensus 166 il~v~~a~~-~~~~~~~~~~~~~~~~~---~--~r~i~Vltk~D~~~~~~ 209 (299)
T d2akab1 166 ILAVSPANS-DLANSDALKIAKEVDPQ---G--QRTIGVITKLDLMDEGT 209 (299)
T ss_dssp EEEEEESSS-CGGGCHHHHHHHHHCTT---C--SSEEEEEECGGGSCTTC
T ss_pred eeeeccccc-chhhhHHHHHHHHhCcC---C--CceeeEEeccccccchh
Confidence 555644432 233333 2333332222 1 68999999999875543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=4.5e-13 Score=112.02 Aligned_cols=118 Identities=16% Similarity=0.291 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+|+++|.+|+|||||+|+|++...... .++.+........ ...+..+.++||||... .. ......+. ..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~---~~---~~~~~~~~--~~ 71 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHES---LR---FQLLDRFK--SS 71 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCHH---HH---HHHHHHHG--GG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--cCCeeEEEEEEEEeeeeeeeeeeeecccccc---cc---chhhhhhh--hh
Confidence 699999999999999999998764333 2222222222222 23467899999999721 11 11122222 57
Q ss_pred CcEEEEEEeCCccc--cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 120 IDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++..... +.+....+...+..........|+++|+||+|+..
T Consensus 72 ~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 72 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred ccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence 89999997764321 11111222233333222222268999999999853
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.39 E-value=2.6e-12 Score=113.97 Aligned_cols=139 Identities=19% Similarity=0.298 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--------------------
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-------------------- 83 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-------------------- 83 (309)
+|++++..+.....+..+|+|+|..++|||||||+|+|.+..+++.. .+|+.+....+.
T Consensus 9 ~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (306)
T d1jwyb_ 9 KLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG-IVTRRPLILQLTHLPIADDGSQTQEWGEFLHK 87 (306)
T ss_dssp HHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSS
T ss_pred HHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCC-ccccCCEEEEEecCCcccCccchhhhhHHhhc
Confidence 34444443333333445899999999999999999999986555443 333322222110
Q ss_pred ---------------------------------------e-CCeEEEEEeCCCCCCCCCC------cHHHHHHHHHhhhc
Q 021685 84 ---------------------------------------R-AGFTLNIVDTPGLIEGGYV------NYHAIQLIKRFLLN 117 (309)
Q Consensus 84 ---------------------------------------~-~g~~l~liDTPG~~~~~~~------~~~~~~~i~~~~~~ 117 (309)
. .-..+.||||||+...... ...+.+.+..++.
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~- 166 (306)
T d1jwyb_ 88 PNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK- 166 (306)
T ss_dssp TTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH-
T ss_pred CCceecCHHHHHHHHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHh-
Confidence 0 1124789999999754322 2233445555663
Q ss_pred CCCcEEEEE-EeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021685 118 KTIDVLLYV-DRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v-~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+|.++++ .+......+.....+++.+. +.. .++++|+||+|..+..
T Consensus 167 -~~~~~il~v~~~~~~~~~~~~~~~~~~~~---~~~--~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 167 -KQNAIIVAVTPANTDLANSDALQLAKEVD---PEG--KRTIGVITKLDLMDKG 214 (306)
T ss_dssp -STTEEEEEEEESSSCSTTCSHHHHHHHHC---SSC--SSEEEEEECTTSSCSS
T ss_pred -CCCceeEEeecccccccccHHHHHHHHhC---cCC--CeEEEEEeccccccch
Confidence 56665444 33332122333344443332 221 5899999999987443
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=7.1e-12 Score=99.41 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|++|||||||+|+|.+.....+. +|...........+....++||+|.......... ....+
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 68 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD---------YFPEV 68 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGG---------GCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeee----ceeeEeEEEeccCCeeEEEEeeccchhhhhhHhh---------hhhhe
Confidence 7999999999999999999998754332 2344445556677788999999987443222211 12578
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++++++++............++...... ......|++++.||.|+.
T Consensus 69 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~ 114 (166)
T d2qtvb1 69 NGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAP 114 (166)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSS
T ss_pred eeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccc
Confidence 9999997765322212222333333222 223346899999999984
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.33 E-value=5.4e-12 Score=108.50 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=88.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g~ 87 (309)
+.++|+++|..++|||||+.+|+...... .....+.+.........+.+.
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 102 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 102 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence 56899999999999999999995211000 000111222222334456778
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
++.++||||..++.. .....+ ..+|++++|++.+..- ...+..+.+..+. ..|. +++++++
T Consensus 103 ~i~~iDtPGH~df~~---~~~~g~------~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~~i---~~iiv~i 169 (245)
T d1r5ba3 103 RFSLLDAPGHKGYVT---NMINGA------SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGI---NHLVVVI 169 (245)
T ss_dssp EEEECCCCC--------------T------TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTC---SSEEEEE
T ss_pred eeeeecccccccchh---hhhhhh------hhhcceeeEEEcCCCccCCccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 999999999955322 111111 5789999997775321 1223444443333 3342 5789999
Q ss_pred ecccCCCCCC--CCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCC-CCch
Q 021685 162 THAQLSLPDR--LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNG-TAWI 233 (309)
Q Consensus 162 tk~D~~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~-~~w~ 233 (309)
||+|+...+. ..+++.+ +.+...+.+-..+.. ...+|++++|+. ++.+....++.. .+|.
T Consensus 170 NKmD~~~~~~~e~~~~ei~----~~l~~~l~~i~~~~~----~~~v~~VPiSA~----~G~nI~~~~~s~~~~wy 232 (245)
T d1r5ba3 170 NKMDEPSVQWSEERYKECV----DKLSMFLRRVAGYNS----KTDVKYMPVSAY----TGQNVKDRVDSSVCPWY 232 (245)
T ss_dssp ECTTSTTCSSCHHHHHHHH----HHHHHHHHHHHCCCH----HHHEEEEECBTT----TTBTTSSCCCTTTCSSC
T ss_pred EcCCCCccchhHHHHHHHH----HHHHHHHHHHhCcCc----ccCCEEEEeecc----CCCCcccchhccCCCCC
Confidence 9999853321 1133333 334444333211111 113788888873 565555554442 2463
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.33 E-value=1.3e-11 Score=100.12 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=68.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++.||+++|.+|||||||+|+|.+.....+.+....+ ......++..+.++|++|...........
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 77 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARRVWKNY--------- 77 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CCGGGGG---------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccc----eeEEEecccccccccccchhhhhhHHhhh---------
Confidence 45799999999999999999999998754333222222 22345678889999999986654433211
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021685 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+.++++++.............+...... ......|++++.||.|+.
T Consensus 78 ~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~ 127 (186)
T d1f6ba_ 78 LPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRP 127 (186)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTST
T ss_pred hcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcc
Confidence 15788999997765322212222222221111 112237999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=3.6e-12 Score=109.19 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=89.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc---------------------c---------cccCCCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKA---------------------V---------TVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~---------------------~---------~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|..++|||||+.+|+-... + ......+.|.......+.+.++
T Consensus 5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 84 (239)
T d1f60a3 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 84 (239)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence 459999999999999999999962100 0 0001134455555667778899
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
+++|+||||..++ -.+.... ...+|++|+|++..... ...+..+.+. +.+..|- +++|+++
T Consensus 85 ~i~iiDtPGH~df---~~~~~~g------~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~~gv---~~iiv~i 151 (239)
T d1f60a3 85 QVTVIDAPGHRDF---IKNMITG------TSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTLGV---RQLIVAV 151 (239)
T ss_dssp EEEEEECCCCTTH---HHHHHHS------SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHTTC---CEEEEEE
T ss_pred EEEEEECCCcHHH---HHHHHHH------HHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHHcCC---CeEEEEE
Confidence 9999999999542 1111111 25889999997664321 1123333332 3334443 5789999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021685 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
||+|..+.+...+++. .+.+.+++.... +. ...+|++++++
T Consensus 152 NKmD~~~~d~~~~~~~----~~el~~~l~~~~-~~-----~~~i~~ipiSa 192 (239)
T d1f60a3 152 NKMDSVKWDESRFQEI----VKETSNFIKKVG-YN-----PKTVPFVPISG 192 (239)
T ss_dssp ECGGGGTTCHHHHHHH----HHHHHHHHHHHT-CC-----GGGCCEEECCT
T ss_pred ECCCCCCCCHHHHHHH----HHHHHHHHHhcC-CC-----CCcEEEEEEEc
Confidence 9999864432222222 345555554321 11 12367777765
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=1.4e-11 Score=107.23 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=86.6
Q ss_pred ce-EEEEEeCCCCCHHHHHHHHhCCCc-----------ccccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021685 39 TL-TILVMGKGGVGKSSTVNSIIGEKA-----------VTVST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l-~I~vvG~~g~GKSSliN~l~g~~~-----------~~~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
.+ ||+++|..|+|||||+.+|+-... ..+.+ ..+.|.......+++++..++|+||||..++
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 35 699999999999999999972110 01111 1123444445677899999999999999766
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHh
Q 021685 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
.... ...+ .-+|.+|+|++... .+......+.+...+. + .|.++++||+|.. ..++++.+
T Consensus 85 ~~e~---~~~l------~~~D~avlVvda~~-Gv~~~T~~~w~~a~~~-~----lP~i~fINKmDr~---~ad~~~~l-- 144 (276)
T d2bv3a2 85 TIEV---ERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-K----VPRIAFANKMDKT---GADLWLVI-- 144 (276)
T ss_dssp STTH---HHHH------HHCCEEEEEEETTT-SSCHHHHHHHHHHHTT-T----CCEEEEEECTTST---TCCHHHHH--
T ss_pred HHHH---HHHH------HhhhheEEeccccC-CcchhHHHHHHHHHHc-C----CCEEEEEeccccc---ccccchhH--
Confidence 4433 2333 36799999977643 5767777777666644 2 7999999999963 33566555
Q ss_pred hhHHHHHhhc
Q 021685 181 RSEALLKFVS 190 (309)
Q Consensus 181 ~~~~l~~~i~ 190 (309)
+.+++.+.
T Consensus 145 --~ei~~~l~ 152 (276)
T d2bv3a2 145 --RTMQERLG 152 (276)
T ss_dssp --HHHHHTTC
T ss_pred --HHHHHHhC
Confidence 34445443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=4e-12 Score=111.12 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=60.6
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcC--CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe
Q 021685 10 EWMGIQQFPPATQTKLLELLGKLKQEN--VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~--~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
+..|..++.....+-+.+..++....+ ..+++|+|+|.||||||||+|+|.|...+.+++.|++|++.+... .+.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~---~~~ 157 (273)
T d1puja_ 81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGK 157 (273)
T ss_dssp TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETT
T ss_pred cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE---CCC
Confidence 344555555555555556556655544 357999999999999999999999999999999999998755432 355
Q ss_pred EEEEEeCCCCCCCCCCcHHH
Q 021685 88 TLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~ 107 (309)
++.++||||+......+++.
T Consensus 158 ~~~l~DTPGi~~p~~~~~~~ 177 (273)
T d1puja_ 158 ELELLDTPGILWPKFEDELV 177 (273)
T ss_dssp TEEEEECCCCCCSCCCCHHH
T ss_pred CeEEecCCCccccCCccHHH
Confidence 79999999998766666543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.26 E-value=2.6e-11 Score=105.16 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=79.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~-----~------~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+|+|..|+|||||+.+|+...... + .+ ..+.|.......+.+++.+++++||||..++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF--- 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF--- 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh---
Confidence 69999999999999999996321100 1 11 1223445556678899999999999999543
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+....+ .-+|++|+|++... .+.....+.++.+.+.. .|.++++||+|.
T Consensus 81 ~~e~~~al------~~~D~avlvvda~~-Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~ 131 (267)
T d2dy1a2 81 VGEIRGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERLG-----LPRMVVVTKLDK 131 (267)
T ss_dssp HHHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCEEEEEECGGG
T ss_pred hhhhhhhh------cccCceEEEeeccC-CccchhHHHHHhhhhcc-----cccccccccccc
Confidence 23333444 36799999977643 57777777877776652 799999999995
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.24 E-value=2.6e-11 Score=102.80 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeCCe
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~------------------------------~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
.+++|+++|..++|||||+-+|+..... ......+.|........++++.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 3689999999999999999999631100 0011122333444455667888
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEEE
Q 021685 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
.++|+||||..++ ..+.... ..-+|++|+|+++...- ...+..+.+.. .+.+|. +++|+++
T Consensus 82 ~i~iiDtPGH~df---~~~~~~g------~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~-~~~~~~---~~iIv~i 148 (224)
T d1jnya3 82 FFTIIDAPGHRDF---VKNMITG------ASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL-AKTMGL---DQLIVAV 148 (224)
T ss_dssp EEEECCCSSSTTH---HHHHHHT------SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH-HHHTTC---TTCEEEE
T ss_pred eeEEeeCCCcHHH---HHHHHHH------HHhhceEEEEEecccCcccccccccchhHHHHHH-HHHhCC---CceEEEE
Confidence 9999999999442 1122211 25789999997775421 11222222222 233342 5799999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021685 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
||+|+..++. +.+. .+...+.+.+++.... + ....++++++++
T Consensus 149 NK~D~~~~~~-~~~~-~~~v~~~i~~~~~~~~-~-----~~~~i~~IPISA 191 (224)
T d1jnya3 149 NKMDLTEPPY-DEKR-YKEIVDQVSKFMRSYG-F-----NTNKVRFVPVVA 191 (224)
T ss_dssp ECGGGSSSTT-CHHH-HHHHHHHHHHHHHHTT-C-----CCTTCEEEECBT
T ss_pred EcccCCCccc-cHHH-HHHHHHHHHhHHHhcC-C-----CcccCeEEEEEc
Confidence 9999865432 2221 2222344444443321 1 122467777765
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.16 E-value=4.6e-11 Score=105.44 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~ 100 (309)
..++|.+||.||||||||+|+|++...+.++++|.||.+|......+.. ..+.++|.||+..+
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence 5699999999999999999999988766788999999887665554332 36899999999764
Q ss_pred CC----CcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021685 101 GY----VNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 101 ~~----~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
.. ...+.+..+ +++|++++|+++.
T Consensus 89 A~~g~GLGn~fL~~i------r~~d~lihVV~~f 116 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHV------RAVDAIYQVVRAF 116 (296)
T ss_dssp CCSSSSSCHHHHHHH------TTCSEEEEEEECC
T ss_pred cccccccHHHHHHHh------hccceeEEEEecc
Confidence 43 345677776 6999999998763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=1.3e-11 Score=109.93 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------------eCCeEEEEEeCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------------RAGFTLNIVDTP 95 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~l~liDTP 95 (309)
++|+++|.||||||||+|+|+|.+. .++++|.||.++...... ..+.++.++|+|
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 6899999999999999999999864 789999998766432211 122469999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCC
Q 021685 96 GLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLD 130 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d 130 (309)
|+......... ...+++. ...+|++++|+++.
T Consensus 80 Gli~ga~~g~~---~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp ------------------CCCSSTTCSEEEEEEETT
T ss_pred Ccccchhcccc---hHHHHHHhhccceEEEEEeccc
Confidence 99764433221 1233442 37999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=3.6e-11 Score=99.11 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=69.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
.+||+++|.+|||||||++++- +.....| |.......+...+..+.+|||+|.......... ...
T Consensus 2 ~iKivllG~~~vGKTsll~r~~----f~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~---------~~~ 66 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR----IIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE---------CFD 66 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH----HHHSCCC--CSSEEEEEEEETTEEEEEEEECC-------CTT---------SCT
T ss_pred eEEEEEECCCCCCHHHHHHHHh----cCCCCCC--eeeeEEEEEeeeeeeeeeecccceeeecccccc---------ccc
Confidence 4899999999999999999992 1222222 333455567788999999999998433222111 125
Q ss_pred CCcEEEEEEeCCccc-cC------hhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYR-VD------NLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~------~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
.+++++++++..... +. ......+..+...... ....|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 67 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred ccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 789999997765421 10 1112333333333321 1236999999999974
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=4.3e-10 Score=100.61 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=73.0
Q ss_pred ce-EEEEEeCCCCCHHHHHHHHhCCCccccc---------C------CCCCCCeeEEEEee----------------eCC
Q 021685 39 TL-TILVMGKGGVGKSSTVNSIIGEKAVTVS---------T------FQSEGPRPVMVSRS----------------RAG 86 (309)
Q Consensus 39 ~l-~I~vvG~~g~GKSSliN~l~g~~~~~~~---------~------~~~~t~~~~~~~~~----------------~~g 86 (309)
.+ +|+|+|..++|||||+.+|+........ + ..+.|......... .++
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 47 4999999999999999999722110000 0 01122222222221 133
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++|+||||..++ ..+....+ +-+|++++|+++.. ++..+....++...+.. .|+++++||+|.
T Consensus 96 ~~inliDtPGh~dF---~~ev~~al------~~~D~allVVda~e-Gv~~qT~~~~~~a~~~~-----~p~i~viNKiDr 160 (341)
T d1n0ua2 96 FLINLIDSPGHVDF---SSEVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGER-----IKPVVVINKVDR 160 (341)
T ss_dssp EEEEEECCCCCCSS---CHHHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CEEEEEEECHHH
T ss_pred eEEEEEcCCCcHHH---HHHHHHHH------hhcCceEEEEeccc-CcchhHHHHHHHHHHcC-----CCeEEEEECccc
Confidence 46999999999554 33444445 36899999977654 57777777777765542 799999999986
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=7.7e-11 Score=96.40 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=71.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
++||+++|..|||||||++++..... ++ ....+.........+.+|||+|.......... ...
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~------~t--~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~---------~~~ 64 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE------AG--TGIVETHFTFKDLHFKMFDVGGQRSERKKWIH---------CFE 64 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS------CC--CSEEEEEEEETTEEEEEEEECCSGGGGGGGGG---------GCT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC------CC--ccEEEEEEEeeeeeeeeeccccccccccchhh---------ccc
Confidence 58999999999999999999875432 11 22334556778889999999998543222211 126
Q ss_pred CCcEEEEEEeCCcc-ccCh------hHHHHHHHHHHHhC--ccccCcEEEEEecccC
Q 021685 119 TIDVLLYVDRLDVY-RVDN------LDKQITRAITDNFG--EQIWKRALIVLTHAQL 166 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~------~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~ 166 (309)
.++++++|++++.. ++.. ...+....+..... .....|+++++||+|+
T Consensus 65 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~ 121 (195)
T d1svsa1 65 GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 121 (195)
T ss_dssp TCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred CCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchh
Confidence 89999999887532 2321 11222222222222 1122589999999986
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.04 E-value=6.2e-10 Score=93.77 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=74.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
..||+++|.+|||||||++.+...+. .| |.......+..++..+.++|++|..........+ ..
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~-----~p--TiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~---------~~ 69 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV-----VL--TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC---------FN 69 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC-----CC--CCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGG---------CT
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc-----CC--CCCeEEEEEEECcEEEEEEecCccceeccchhhh---------cc
Confidence 58999999999999999999964321 12 2223445567789999999999986543332221 16
Q ss_pred CCcEEEEEEeCCccc-cC------hhHHHHHHHHHHHhCcc--ccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYR-VD------NLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~------~~d~~~l~~l~~~~g~~--~~~~~iiV~tk~D~~ 167 (309)
+++++++|++..... +. ..-.+.+..+...+... ...|+++++||+|+.
T Consensus 70 ~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 70 DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp TCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred cccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 899999998875422 11 11223444444444432 236899999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=2.6e-10 Score=93.59 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=71.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
++||+++|.+|||||||++++..... ...| |..............+.+|||+|..........+ ..
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~---~~~p--TiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---------~~ 67 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG---SGVP--TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHC---------FE 67 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS---SCCC--CCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGG---------CS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC---CCCc--eeeEEEEEEeccceeeeecccccccccccccccc---------cc
Confidence 59999999999999999999976543 2222 2223334556678899999999985443332211 16
Q ss_pred CCcEEEEEEeCCccc-cC------hhHHH----HHHHHHHHhCccccCcEEEEEecccCC
Q 021685 119 TIDVLLYVDRLDVYR-VD------NLDKQ----ITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~------~~d~~----~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+++++++|++..... +. ..-.+ +...+...... ..|+++|+||.|+.
T Consensus 68 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~--~~~~~~v~NK~Dl~ 125 (200)
T d2bcjq2 68 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILFLNKKDLL 125 (200)
T ss_dssp SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGS--SSEEEEEEECHHHH
T ss_pred ccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhcc--CccEEEecchhhhh
Confidence 889999998764321 10 11122 22233222222 26899999999873
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.03 E-value=1.1e-10 Score=102.04 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=60.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGG 101 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~~ 101 (309)
.++|.+||.||||||||+|+|++.+. .++++|.||.+|......+.. -.+.++|.||+-.+.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga 80 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence 38999999999999999999998875 778889999877655544322 147899999997643
Q ss_pred C----CcHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021685 102 Y----VNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 102 ~----~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
. ...+.++.+ +++|++++|++.
T Consensus 81 ~~g~Glg~~FL~~i------r~~d~LihVVr~ 106 (278)
T d1jala1 81 SKGEGLGNKFLANI------RETDAIGHVVRC 106 (278)
T ss_dssp HHHGGGTCCHHHHH------HTCSEEEEEEEC
T ss_pred ccCCCccHHHHHHH------HhccceEEEeec
Confidence 2 223566666 499999999875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.1e-09 Score=97.60 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=36.5
Q ss_pred cCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 14 IQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+++-...-+....+++.++.....+.++|.|.|.+|+|||||+|+|.
T Consensus 29 vE~~~~~~~~~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 29 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred HhCCCcccHHHHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHH
Confidence 34434444444567788887766778999999999999999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.92 E-value=7.7e-10 Score=93.59 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021685 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
-|+|+|..|+|||||+++|+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll 21 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFG 21 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999997
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.92 E-value=4.8e-09 Score=93.17 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=41.4
Q ss_pred ccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 11 WMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..-+++-...-.....+++..+.....+.++|.|.|.+|+|||||+++|..
T Consensus 23 it~~E~~~~~~~~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 23 ITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCCchhHHHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence 344455566666677788888887777889999999999999999999983
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=9.3e-10 Score=92.43 Aligned_cols=61 Identities=26% Similarity=0.260 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
-+.+++|.+|||||||||+|++.....++.. .+||+....+.+..+ -.|+||||+.+.+..
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~l~ 163 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLEIN 163 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCCCC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccccc
Confidence 3678999999999999999998755444432 335555555444333 469999999876653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=1.9e-09 Score=90.78 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
+.+++|.+|||||||||+|++.....++... +||+....+. .+| -.||||||+.+.+.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~~g--g~iiDTPG~r~~~l 163 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSG--GLVADTPGFSSLEF 163 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETT--EEEESSCSCSSCCC
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--cCC--CEEEECCccccccc
Confidence 5678999999999999999998544443322 3444433332 344 35899999987664
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.47 E-value=1.1e-06 Score=72.69 Aligned_cols=72 Identities=21% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||. ...+...++.+..+....++|-+++|.+.. ....+....+...+.++ .-=+++||.
T Consensus 91 ~~~d~vlIDTaGr---~~~d~~~~~el~~~~~~~~~~~~llv~~a~---~~~~~~~~~~~f~~~~~-----~~~~I~TKl 159 (207)
T d1ls1a2 91 EARDLILVDTAGR---LQIDEPLMGELARLKEVLGPDEVLLVLDAM---TGQEALSVARAFDEKVG-----VTGLVLTKL 159 (207)
T ss_dssp HTCCEEEEECCCC---SSCCHHHHHHHHHHHHHHCCSEEEEEEEGG---GTHHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred ccCcceeeccccc---chhhhhhHHHHHHHHhhcCCceEEEEeccc---cchhHHHHHHHHHhhCC-----CCeeEEeec
Confidence 4557999999998 444555556666555445778888884442 22445555555555543 445889999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 160 De~ 162 (207)
T d1ls1a2 160 DGD 162 (207)
T ss_dssp GGC
T ss_pred Ccc
Confidence 974
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=1.2e-06 Score=72.70 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc------CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~------~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
++..+.||||||. ...+.+..+.+..+... ..++-+++|.+... ...+..-+....+.+ ...=
T Consensus 92 ~~~d~ilIDTaGr---~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~ 160 (213)
T d1vmaa2 92 RNKDVVIIDTAGR---LHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG 160 (213)
T ss_dssp TTCSEEEEEECCC---CSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred cCCCEEEEecccc---ccchHHHHHHHHHHHhhhhhccccccceeEEeecccc---Ccchhhhhhhhcccc-----CCce
Confidence 3567999999998 44444544545443321 23677888844432 122322222222222 3566
Q ss_pred EEEecccCCC
Q 021685 159 IVLTHAQLSL 168 (309)
Q Consensus 159 iV~tk~D~~~ 168 (309)
+++||.|...
T Consensus 161 lI~TKlDe~~ 170 (213)
T d1vmaa2 161 IILTKLDGTA 170 (213)
T ss_dssp EEEECGGGCS
T ss_pred EEEecccCCC
Confidence 8899999753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=4.4e-07 Score=75.15 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC---CcccccCCCCCCCee---------------EEEEe---------------
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIGE---KAVTVSTFQSEGPRP---------------VMVSR--------------- 82 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~---~~~~~~~~~~~t~~~---------------~~~~~--------------- 82 (309)
+..+.-|+++|.+|+||||++-.|... ....+.-....|.++ ..+..
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~ 85 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 85 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHH
Confidence 345678899999999999998776521 111111111111100 00000
Q ss_pred --eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh---hc---CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcccc
Q 021685 83 --SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 154 (309)
Q Consensus 83 --~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~---~~---~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~ 154 (309)
...+..+.||||||. ...+....+.+++.. .. ..++-+++|.+.. ....+........+..
T Consensus 86 ~a~~~~~d~ilIDTaGr---~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~---~~~~~~~~~~~~~~~~----- 154 (211)
T d2qy9a2 86 AAKARNIDVLIADTAGR---LQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---TGQNAVSQAKLFHEAV----- 154 (211)
T ss_dssp HHHHTTCSEEEECCCCC---GGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG---GTHHHHHHHHHHHHHS-----
T ss_pred HHHHcCCCEEEeccCCC---ccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc---cCcchHHHHhhhhhcc-----
Confidence 013557899999998 334444444444332 11 1367788884433 2233333333333333
Q ss_pred CcEEEEEecccCC
Q 021685 155 KRALIVLTHAQLS 167 (309)
Q Consensus 155 ~~~iiV~tk~D~~ 167 (309)
..-=+++||.|..
T Consensus 155 ~~~~lIlTKlDe~ 167 (211)
T d2qy9a2 155 GLTGITLTKLDGT 167 (211)
T ss_dssp CCCEEEEECCTTC
T ss_pred CCceEEEeecCCC
Confidence 3566889999975
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.34 E-value=1.3e-06 Score=72.37 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021685 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||....+ .....++.+..+...-.++-+++|.+... ...+........+.+ ..--+++||.
T Consensus 93 ~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~lI~TKl 163 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITKM 163 (211)
T ss_dssp TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHHC-----TTEEEEEECT
T ss_pred cCCceEEEecCCcCccc-hhhHHHHHHHHHHhhcCCceEEEEEeccc---CcchHHHHhhhhccc-----CcceEEEecc
Confidence 45679999999983322 11122334444433335677888855432 123333333333333 2345779999
Q ss_pred cCC
Q 021685 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 164 Det 166 (211)
T d1j8yf2 164 DGT 166 (211)
T ss_dssp TSC
T ss_pred cCC
Confidence 974
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.32 E-value=9.1e-06 Score=66.86 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHh---h---hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEE
Q 021685 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRF---L---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI 159 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~---~---~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~ii 159 (309)
+..+.||||||... .+.+..+.++.+ . ....++-+++|.+.. ....+...+....+.++ ..=+
T Consensus 88 ~~d~ilIDTaGr~~---~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~---~~~~~~~~~~~~~~~~~-----~~~l 156 (207)
T d1okkd2 88 GYDLLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV---TGQNGLEQAKKFHEAVG-----LTGV 156 (207)
T ss_dssp TCSEEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT---BCTHHHHHHHHHHHHHC-----CSEE
T ss_pred CCCEEEcCccccch---hhHHHHHHHHHHHHHhhhcccCCCceEEEEeecc---cCchHHHHHHHhhhccC-----CceE
Confidence 55799999999843 333333333322 2 123567788885443 23444444444444443 4567
Q ss_pred EEecccCCCC
Q 021685 160 VLTHAQLSLP 169 (309)
Q Consensus 160 V~tk~D~~~~ 169 (309)
++||.|....
T Consensus 157 I~TKlDet~~ 166 (207)
T d1okkd2 157 IVTKLDGTAK 166 (207)
T ss_dssp EEECTTSSCC
T ss_pred EEeccCCCCC
Confidence 8999997533
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5.3e-05 Score=65.02 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCc-ccccC-CCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~-~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~ 101 (309)
.-|.|+|+.++|||+|+|.|+|... +.+++ ..++|.-........ .+..+.++||.|+.+.+
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~ 99 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 99 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence 4788999999999999999999753 22332 233444433333222 34579999999997643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.35 E-value=3.7e-05 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+||+|+|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 68999999999999999999975
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.13 E-value=0.00068 Score=56.76 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=37.1
Q ss_pred hhhhccccCCCChhhHHHHHHHHHHhhhcCCC-ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVN-TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~-~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+..+|+.+--..+.+.+.-+.+.++.-... .-.|++.|++|+|||+++++|.++
T Consensus 7 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 7 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhc
Confidence 44555565544444455555555555543333 346999999999999999999753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0001 Score=58.89 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|+|++|+|||||++.|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999999964
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.94 E-value=0.00025 Score=55.19 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+++|+++|.+|+||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.89 E-value=0.00062 Score=53.92 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhc-CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 22 QTKLLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 22 ~~~l~~~~~~~~~~-~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+++..+.++..+. ...++-|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555555555443 34578899999999999999999973
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.85 E-value=0.00022 Score=55.85 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=+|+|+|.+|+|||||+++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0004 Score=58.05 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+|+|+|++|+|||||++.|+|--
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 369999999999999999999964
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00041 Score=53.62 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|+|+|.+|+|||||+|.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999985
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.67 E-value=0.00042 Score=55.19 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+|++|+|+|.+|+||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.63 E-value=0.00044 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
-++|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0014 Score=52.78 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021685 22 QTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
.+++.++..-+..+.. =+++++|++|+|||+++..|...-. .+..+. ...+..+.-+|+..+..+.
T Consensus 28 d~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~----------~L~~~~i~~ld~~~LiAg~ 93 (195)
T d1jbka_ 28 DEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRII--NGEVPE----------GLKGRRVLALDMGALVAGA 93 (195)
T ss_dssp HHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHH--HTCSCG----------GGTTCEEEEECHHHHHTTT
T ss_pred HHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHH--hCCCCH----------HHcCceEEEeeHHHHhccC
Confidence 3456666666665543 4889999999999999988875321 111111 1234456667766654433
Q ss_pred CCcHHHHHHHHH---hhhcCCCcEEEEEEeC
Q 021685 102 YVNYHAIQLIKR---FLLNKTIDVLLYVDRL 129 (309)
Q Consensus 102 ~~~~~~~~~i~~---~~~~~~~d~il~v~~~ 129 (309)
....+..+.++. .+....-++|||+..+
T Consensus 94 ~~rG~~E~rl~~il~e~~~~~~~iILfIDei 124 (195)
T d1jbka_ 94 KYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124 (195)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTTEEEEEETG
T ss_pred CccHHHHHHHHHHHHHHhcCCCcEEEEcchH
Confidence 333233332322 2222455788888654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.00037 Score=55.27 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+++|++|+||||+++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999865
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.58 E-value=0.00056 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|--
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 69999999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.53 E-value=0.00062 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|--
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.48 E-value=0.0013 Score=54.26 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.+.|..++......+...-.+++.|++|+||||+++++.++
T Consensus 16 ~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 16 RLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445555565555544445568999999999999999999854
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0007 Score=56.89 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|--
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 68999999999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0034 Score=52.98 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.+++.-|..... =++++||++|+|||+++..|...
T Consensus 25 ~Ei~~l~~iL~r~~k--~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 25 KELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp HHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc--CCcEEECCCCCcHHHHHHHHHHH
Confidence 445666666655443 48899999999999999988854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.41 E-value=0.00085 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+||+|+|.+|+||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.41 E-value=0.00079 Score=51.16 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|.+|+||||+++.|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999998643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.00086 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|.-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.38 E-value=0.0011 Score=55.43 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhhh---cCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 20 ATQTKLLELLGKLKQ---ENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~---~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.++.+.+.++.+.. ....|--|++.|+||+||||++.+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 445555555555432 1224556999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.37 E-value=0.00024 Score=56.85 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|+|++|+||+||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.36 E-value=0.0012 Score=57.60 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++..+-. ...+|+|.|.+|+||||++|+|++.
T Consensus 155 ~~~~l~~~v~---~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 155 AISAIKDGIA---IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HHHHHHHHHH---HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHH---hCCCEEEEeeccccchHHHHHHhhh
Confidence 3444444444 2357999999999999999999964
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.33 E-value=0.00091 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|+|--
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 47899999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.30 E-value=0.0011 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
|.-|+++|.||+||||+.+.|..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0007 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=|+|+|++|||||||++.|+...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47889999999999999998653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.001 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.28 E-value=0.001 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCcchhhHhccCCC
Confidence 57999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.23 E-value=0.0016 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+|..|+|+|.+|+||||+...|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999988874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.20 E-value=0.0012 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|.|.+|+||||+.+.|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.20 E-value=0.0016 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...+.|.++|.+|+||||+.+.|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988874
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0042 Score=50.19 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 19 PATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.+....++...+.. +.-+=-+++.|++|+||||++..+..
T Consensus 5 Pw~~~~~~~l~~~~~~-~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 5 PWLRPDFEKLVASYQA-GRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp GGGHHHHHHHHHHHHT-TCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHc-CCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 3434444444444444 22223489999999999999876553
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0028 Score=52.01 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.|...+......+...-.+++.|++|+||||+++.|..+
T Consensus 17 ~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 17 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence 444555555544444444457999999999999999998754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.17 E-value=0.0014 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+|+|.+|+||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999888743
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.16 E-value=0.00076 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+++|+|++|+|||||++.|+|--
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHhcC
Confidence 378999999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0013 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 47999999999999999999964
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.14 E-value=0.0013 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57999999999999999999964
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.12 E-value=0.0013 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||+|.|+|-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.11 E-value=0.0015 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+++|.+|+||||+.+.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.001 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++++|++|+|||||++.|.|-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0017 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++|+|+|.+|+||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999998874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.08 E-value=0.0015 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.+.++|++|+|||||++.|.|-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.0015 Score=50.68 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|.|+|.+|+|||||++.|+..
T Consensus 4 i~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 359999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.06 E-value=0.0019 Score=51.20 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..++|+++|.+|+||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999998873
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0017 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+++|.+|+||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.05 E-value=0.0016 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999964
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.03 E-value=0.001 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 47899999999999999999964
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0062 Score=54.13 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021685 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
+++.+++.-|..+.. =++++||++|||||+++..|...- ..+..|.. ..+..+.-+|...+..+..
T Consensus 29 ~ei~~~~~~L~r~~k--~n~llvG~~GvGKtaiv~~la~~i--~~~~vp~~----------l~~~~i~~ld~~~l~ag~~ 94 (387)
T d1qvra2 29 EEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRI--VKGDVPEG----------LKGKRIVSLQMGSLLAGAK 94 (387)
T ss_dssp HHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHH--HHTCSCTT----------STTCEEEEECC--------
T ss_pred HHHHHHHHHHhcCCC--CCCeEECCCCCCHHHHHHHHHHHH--HhCCCCHH----------HcCceEEEeeHhhhhcccC
Confidence 456666666665443 466999999999999998777431 11122211 2334555566655544322
Q ss_pred C---cHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021685 103 V---NYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 103 ~---~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
. .++.+..+...+.....++|||+..+
T Consensus 95 ~~g~~e~r~~~i~~~~~~~~~~~ilfide~ 124 (387)
T d1qvra2 95 YRGEFEERLKAVIQEVVQSQGEVILFIDEL 124 (387)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred cchhHHHHHHHHHHHhccCCCceEEEeccH
Confidence 1 22233333233333455788888544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.002 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+|+-|+|.|.+|+||||+.+.|..
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.03 Score=46.54 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.+++.|++|+|||++++++..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345999999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0017 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+++|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0022 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
|+.|+|+|.+|+||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999988864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.92 E-value=0.0018 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 57999999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0019 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|+.|+|||||+|.|+|-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999975
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.049 Score=44.26 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.+..+-......-.+++.|++|+||||++.++..
T Consensus 20 ~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 20 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp HHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 333334433333344699999999999999977764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.88 E-value=0.002 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||+|.|+|-.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 36899999999999999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0018 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998884
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.85 E-value=0.0024 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-|++.|.+|+||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.84 E-value=0.0024 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-++|+|+|.+|+||||+...|...
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH
Confidence 4599999999999999999998853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.75 E-value=0.0027 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=17.7
Q ss_pred eEEE-EEeCCCCCHHHHHHHHh
Q 021685 40 LTIL-VMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~-vvG~~g~GKSSliN~l~ 60 (309)
+||+ |.|.+|+||||+++.|.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4565 56999999999999986
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.73 E-value=0.0022 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-+|+++|.+|+||||+.+.|..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988863
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.71 E-value=0.0024 Score=50.75 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.8
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
++.+|+-|+|-|..||||||+++.|..
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999999874
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0024 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+...+.|.++|.+|+||||+.+.|..
T Consensus 16 ~~~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 16 GFRGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp SCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999999863
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.68 E-value=0.0027 Score=49.35 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=17.5
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
|+|.|.+|+||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999885
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.67 E-value=0.0014 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 58999999999999999999964
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.62 E-value=0.0026 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
+|+++|.+|+||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.55 E-value=0.0032 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.3
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|.+|+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 667799999999999998854
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0038 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-=|+++|.+|+||||+.+.|..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999999875
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.0049 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.=|+++|.+|+||||++..++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0039 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|+|++|+||||+++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.20 E-value=0.012 Score=48.30 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..+-.+++.|++|+|||++++.+..
T Consensus 40 ~~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 40 GHHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999998884
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.10 E-value=0.0072 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.|+-|+|.|.+|+||||+.+.|-
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.01 E-value=0.0054 Score=47.59 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021685 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
.|+++|.+|+||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37889999999999998885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.86 E-value=0.011 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.+.+-|.+.|.||+||||+.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.62 E-value=0.01 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||++++++.++
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHH
Confidence 346999999999999999999964
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.59 E-value=0.0092 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|+++|++|+||||+...|...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 355889999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.0094 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--|+++|++|+||||+...|...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999988753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.022 Score=47.63 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=37.7
Q ss_pred ccccCCCChhhHHHHHHHHH---HhhhcCCC-ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 11 WMGIQQFPPATQTKLLELLG---KLKQENVN-TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~---~~~~~~~~-~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.|.++...++++.+.--+. .+.+.+.. +-.|++.|++|+|||++++++.++-
T Consensus 9 i~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 9 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 46888888888877653332 22233333 3569999999999999999998653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.30 E-value=0.022 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+||||++..+..+
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.015 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHh
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
..|+-|+|.|.+|+|||||.+.|-
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHH
Confidence 468999999999999999988775
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.24 E-value=0.015 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.|+|-|++|+||||....|...
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999888753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.018 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|++|+|||++++++..+
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 346999999999999999999865
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.10 E-value=0.034 Score=47.02 Aligned_cols=26 Identities=38% Similarity=0.362 Sum_probs=22.3
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHh
Q 021685 35 ENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.+..|+=|+|.|.+|+|||||.+.|.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 34568999999999999999988775
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.02 E-value=0.093 Score=41.95 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE-EEEeccc
Q 021685 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQ 165 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i-iV~tk~D 165 (309)
..+.|+|||+.. .......+ ..+|.++++...+..++. .-.+.++.+.+. + .+++ +|+|+.+
T Consensus 112 ~d~IiiD~~~~~-----~~~~~~~l------~~aD~viiv~~~~~~s~~-~~~~~~~~~~~~-~----~~~~giv~N~~~ 174 (237)
T d1g3qa_ 112 FDFILIDCPAGL-----QLDAMSAM------LSGEEALLVTNPEISCLT-DTMKVGIVLKKA-G----LAILGFVLNRYG 174 (237)
T ss_dssp CSEEEEECCSSS-----SHHHHHHH------TTCSEEEEEECSCHHHHH-HHHHHHHHHHHT-T----CEEEEEEEEEET
T ss_pred CCEEEEcccccc-----cccchhhh------hhhhcccccccccceecc-hhhHHHHHHhhh-h----hhhhhhhhcccc
Confidence 358999999752 22333333 478999999665532221 123344444332 2 3443 7899997
Q ss_pred CC
Q 021685 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
..
T Consensus 175 ~~ 176 (237)
T d1g3qa_ 175 RS 176 (237)
T ss_dssp SC
T ss_pred cc
Confidence 53
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.036 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+||||++.++..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999865
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.67 E-value=0.038 Score=46.30 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 23 TKLLELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++.++.+.+.+.. .+..-|+|.|..|+|||||+..++..
T Consensus 27 ~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 27 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44555666665422 23456789999999999999998754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.67 E-value=0.018 Score=47.33 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|++|+|||||++.++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578899999999999998864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.034 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.|++|+||||++..+..+
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5899999999999999888753
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.45 E-value=0.16 Score=41.17 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|.+++|+.++...++..-.+-+-.+....| .+.++|+||+|+.+
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~----i~pvIvlnK~DL~~ 55 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE----LETVMVINKMDLYD 55 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT----CEEEEEECCGGGCC
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC----CCEEEEEeCcccCC
Confidence 378989999776543343332221112222323 68999999999973
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.026 Score=47.30 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021685 107 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+.+.+.+ ..+|+||+|.+.-. .++..+..+.+.+ . .+|.|+|+||+|+.++
T Consensus 5 a~r~i~~~i--~~~DvIl~V~DaR~-P~ss~~~~l~~~~----~---~Kp~IlVlNK~DLv~~ 57 (273)
T d1puja_ 5 ARREVTEKL--KLIDIVYELVDARI-PMSSRNPMIEDIL----K---NKPRIMLLNKADKADA 57 (273)
T ss_dssp HHHHHHHHG--GGCSEEEEEEETTS-TTTTSCHHHHHHC----S---SSCEEEEEECGGGSCH
T ss_pred HHHHHHHHH--HhCCEEEEEEECCC-CCCCCCHHHHHHH----c---CCCeEEEEECccCCch
Confidence 334444444 68999999966421 2444444333333 2 1799999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.30 E-value=0.02 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|+++|+||+|||.|.++|...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 456899999999999999999853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.27 E-value=0.02 Score=50.90 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
==|+|.|++|+||||++.+++..
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHhhh
Confidence 45889999999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.023 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.++++|++|+|||.|..+|..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3799999999999999998873
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.19 E-value=0.025 Score=44.79 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-|+|-|..|+||||+++.|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988873
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.046 Score=43.91 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+++.|++|+||||+++.+..
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHH
Confidence 3589999999999999988764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.03 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.|++|+||||++..+..+
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999888753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.03 E-value=0.17 Score=38.59 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=35.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
...-|++-|.-|+|||||+..++..=. ......++|-... ..+..++..+.=+|.==+
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg-~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlYRl 89 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIG-HQGNVKSPTYTLV-EEYNIAGKMIYHFDLYRL 89 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTT-CCSCCCCCTTTCE-EEEEETTEEEEEEECTTC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcc-cccccCCCceEEE-EeeccCCceEEEEEEecc
Confidence 456789999999999999998885421 2233444443322 223344556666664433
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.0052 Score=48.07 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=16.0
Q ss_pred EEEeCCCCCHHHHHHHHh
Q 021685 43 LVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~ 60 (309)
+|+|+.|+||||++.+|.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.55 E-value=0.037 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+-|+|.|..|+||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998775
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.038 Score=44.14 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+-|+|.|..|+||||+.+.|-
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 558899999999999999775
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.32 E-value=0.039 Score=43.16 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.=|++.|++|+||||+...|...-
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988653
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.29 E-value=0.078 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.--+++.|++|+|||++.++|.+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.27 E-value=0.031 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+=+|+++|+||+|||-|.++|.+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.4 Score=39.57 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.3
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021685 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
-+.+.|++|+|||+|.=.+.
T Consensus 56 itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHH
Confidence 46788999999999975555
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.14 E-value=0.075 Score=43.49 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=17.1
Q ss_pred EEEeCCCCCHHHHHHHHhCC
Q 021685 43 LVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.|++|+|||+++++++..
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 44699999999999998854
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=92.08 E-value=0.073 Score=43.80 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++++++++........-|+|.|++|+||+.+...|..
T Consensus 8 ~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 8 KMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 34556666666555667789999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.04 E-value=0.042 Score=42.95 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.=|++.|++|+||||+.-.|...
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 45899999999999999888854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.043 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=|+|.|++|+||||....|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999888753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.63 E-value=0.67 Score=38.22 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
=..+.|++++|||+|.-.+..
T Consensus 59 itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHH
Confidence 457889999999999877664
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.29 E-value=0.045 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=18.7
Q ss_pred Cce-EEEEEeCCCCCHHHHHHHHh
Q 021685 38 NTL-TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l-~I~vvG~~g~GKSSliN~l~ 60 (309)
.+. .++++|++|+|||.+.+.|.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHH
Confidence 344 67888999999999887665
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.27 E-value=0.13 Score=41.25 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.|++|+|||-|++++..+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.057 Score=42.09 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++|.|++|+|||+|...++..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4688899999999999888743
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.04 E-value=0.066 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..=|++.|++|+||||+.-.|...
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 356899999999999999888755
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.036 Score=44.71 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|-|..||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998775
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=0.051 Score=47.54 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l 59 (309)
.+++ |+|+.|+|||+++.||
T Consensus 26 ~l~~-i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 26 NFTS-IIGPNGSGKSNMMDAI 45 (427)
T ss_dssp SEEE-EECSTTSSHHHHHHHH
T ss_pred CEEE-EECCCCCCHHHHHHHH
Confidence 4765 6799999999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.064 Score=42.56 Aligned_cols=20 Identities=30% Similarity=0.616 Sum_probs=17.8
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 021685 42 ILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g 61 (309)
|++-|..|+||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999988763
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.80 E-value=0.036 Score=46.62 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=17.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHH
Q 021685 39 TLTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l 59 (309)
.++ +++|+.|+||||++.+|
T Consensus 25 ~ln-vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 25 RVT-AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp SEE-EEECCTTTCSTHHHHHH
T ss_pred CeE-EEECCCCCcHHHHHHHH
Confidence 366 56799999999999888
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.05 Score=44.02 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|.|--|+|||||+|.++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 577899999999999999864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.66 E-value=0.15 Score=41.29 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.+++.|++|+||||++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999887653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.55 E-value=0.095 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 36 NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..+-+|+++|+||||||-+..+|..
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHHh
Confidence 34567899999999999999999863
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.46 E-value=0.035 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=16.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+.-|+|.|.+|+||||+.++|.
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3459999999999999999865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.079 Score=42.33 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
=|++-|..|+||||+++.|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378889999999998887753
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.075 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
+++|+|.||+|||++++.++-
T Consensus 52 H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999887763
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.74 E-value=0.085 Score=42.64 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-|+|.|..|+||||+.|.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999998643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.71 E-value=0.74 Score=37.09 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=26.9
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021685 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|.+++|+.+....+...-.+-+-.+....| .+.++|+||+|+.+
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~----i~pvIvlnK~DL~~ 55 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAND----IQPIICITKMDLIE 55 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT----CEEEEEEECGGGCC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC----CCEEEEEecccccc
Confidence 378988888665432333222221112222222 58899999999974
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.71 E-value=0.091 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++|.|++|+|||+|+..++-.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788899999999999888754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.11 Score=41.75 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
|--|+|=|..||||||+++.|..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.37 E-value=0.073 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-++|.|=|.-|+||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999999754
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.09 E-value=0.12 Score=37.64 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|.|.+.|.+|+|||++.|+|..
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 469999999999999999999973
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.91 E-value=0.12 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021685 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|.|=|.-|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 589999999999999999999864
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.81 E-value=0.1 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|.|=|.-|+||||+++.|..
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred eEEEEECCcCCCHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.72 E-value=0.11 Score=42.76 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=17.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021685 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.++ ++|.|.||+|||+|+..+.
T Consensus 35 G~l-~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 35 GEV-IMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TCE-EEEECSTTSSHHHHHHHHH
T ss_pred CeE-EEEEeCCCCCHHHHHHHHH
Confidence 345 5788999999999976665
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.39 E-value=0.13 Score=41.38 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++|.|++|+|||+|...++-
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578889999999999877763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.17 E-value=0.14 Score=40.82 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++|.|.+|+|||+|...++-
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999999877763
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=88.06 E-value=0.24 Score=39.29 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021685 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.=-|++.|++++|||+++++|++
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 446789999999999999988874
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.75 E-value=0.063 Score=45.95 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021685 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+++|.+|+|||+++.++.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.66 E-value=0.15 Score=40.85 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
--++|.|++|+|||+|...++-
T Consensus 27 sl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3567889999999999877764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=0.16 Score=40.49 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
.=|++-|..|+||||+++.|..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999988863
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=87.37 E-value=0.17 Score=41.54 Aligned_cols=19 Identities=42% Similarity=0.899 Sum_probs=15.8
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 021685 41 TILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l 59 (309)
+|+|.|+.|+||||+.-.|
T Consensus 3 ~Iai~gKGGvGKTT~a~nL 21 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNL 21 (269)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHH
Confidence 5889999999999986433
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.93 E-value=0.37 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhC
Q 021685 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.--+.+.|+++.|||+|+++|..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4567889999999999999988874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.61 E-value=0.16 Score=43.48 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021685 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|+||+|||.+..+|.++
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 555799999999999999975
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.02 E-value=0.22 Score=39.33 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021685 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
--++|.|++|+|||+|.-.++
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 456788999999999976554
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=0.41 Score=39.12 Aligned_cols=19 Identities=53% Similarity=0.975 Sum_probs=14.1
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
|++.|+.|+||||+.-.|.
T Consensus 23 ii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 23 IMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4555999999999864443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=85.31 E-value=0.24 Score=40.50 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.9
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
.+|+|.+|+|||+|+-.|.
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5589999999999986654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.04 E-value=0.25 Score=39.53 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021685 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
=-++|.|.+|+|||+|.-.++.
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3678899999999999988774
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.88 E-value=5 Score=31.83 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.5
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
++|.|+..+||||++.++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 6889999999999987654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.69 E-value=4 Score=32.22 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.5
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021685 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
++|.|+..+||||++.++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999987655
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.67 E-value=1.1 Score=37.00 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021685 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-..+.|++|+|||+|.-.+..... ..|..+.+|||-|-.
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q-------------------~~g~~~vyIDtE~~~ 100 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQ-------------------AAGGVAAFIDAEHAL 100 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH-------------------HTTCEEEEEESSCCC
T ss_pred eEEEecCCCcHHHHHHHHHHHHHh-------------------cCCCEEEEEECCccC
Confidence 457889999999999755552210 123456789998864
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.20 E-value=0.35 Score=40.06 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 021685 41 TILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l 59 (309)
+|+|-|+.|+||||+.-.|
T Consensus 4 ~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778899999999976444
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.16 E-value=0.22 Score=41.22 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=13.2
Q ss_pred EEEEeCCCCCHHHHH
Q 021685 42 ILVMGKGGVGKSSTV 56 (309)
Q Consensus 42 I~vvG~~g~GKSSli 56 (309)
++|+|.+|+||||++
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 688999999999864
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=82.63 E-value=0.28 Score=40.95 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=13.3
Q ss_pred EEEEeCCCCCHHHHH
Q 021685 42 ILVMGKGGVGKSSTV 56 (309)
Q Consensus 42 I~vvG~~g~GKSSli 56 (309)
++|.|.+|+||||++
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 789999999999864
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.66 E-value=0.38 Score=39.51 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=16.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021685 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+--|.+.|+.|+||||+.-+|.
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHHH
Confidence 3456789999999999764444
|