Citrus Sinensis ID: 021686

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31

MSDQENGLPENPQWQELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQASGSPNQTTA

ccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccHHHcccccccccc

ccccHccccccHHHHHHccHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHEHEHHHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEcccccccEEEEEccHHHHHHHHHHHHHHcccccccccccccHcccEEEEcccccccHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHccccEEEEccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEEEccccccccc

msdqenglpenpqwqELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLnclkesdvfevdFSQVLQVKTALIQTAMefgdeqqhprmtaKSLTTVAADIRENDWLEKlqlsgykpeknTVWVLEVLLADfmnqpsttlsssifhfssdwpdrllptlgfsnvrlsqigdpdahfglmndplnlfnklrslprsvqthpddgtpcrrlylvqasgspnqtta

msdqenglpenpqwqELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEkikkdrlnnarEISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMefgdeqqhprmtAKSLTTVAADIRENDWLEKlqlsgykpekNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSvqthpddgtpCRRLYlvqasgspnqtta

***************ELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFG***********SLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKL******************RLYL************

**************************************WDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQAS*SP*****

**********NPQWQELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQA*********

**********NPQWQELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEF***********KSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQAS********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		309	2.2.26 [Sep-21-2011]
B1MGB7		305	Putative S-adenosyl-L-met	yes	no	0.588	0.596	0.323	2e-13
A0QKZ0		304	Putative S-adenosyl-L-met	yes	no	0.546	0.555	0.304	4e-12
A1T4S9		306	Putative S-adenosyl-L-met	yes	no	0.517	0.522	0.313	6e-12
Q73S87		304	Putative S-adenosyl-L-met	N/A	no	0.546	0.555	0.309	1e-11
A0QSH3		303	Putative S-adenosyl-L-met	yes	no	0.576	0.587	0.300	4e-11
A0QMX9		313	Putative S-adenosyl-L-met	no	no	0.339	0.335	0.355	7e-11
Q73U05		313	Putative S-adenosyl-L-met	N/A	no	0.339	0.335	0.355	7e-11
A0QM57		301	Putative S-adenosyl-L-met	no	no	0.333	0.342	0.362	7e-11
A0QSH4		298	Putative S-adenosyl-L-met	no	no	0.508	0.526	0.337	9e-11
A0QKY8		314	Putative S-adenosyl-L-met	no	no	0.527	0.519	0.327	1e-10

>sp\|B1MGB7\|Y3787_MYCA9 Putative S-adenosyl-L-methionine-dependent methyltransferase MAB_3787 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_3787 PE=3 SV=1	Back alignment and function desciption

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 34  TIDAQWDY---LQRTACQTAAGRAMWKHV----IHDPLADLLA---GETYLRN------- 76
           T D  WD    +  TA   AA RA+  HV    I+DP A+ L    G  Y          
Sbjct: 4   TDDDSWDLASSVGATATMVAAQRALASHVPNPLINDPYAEPLVRAVGIEYFTKLASGAFD 63

Query: 77  -------VHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGM 129
                  V   I  D + N        +A RT ++D+  E   +S  +   Q V+L +G+
Sbjct: 64  PEQMAGLVQLGITADGMANG-------MASRTWYYDTAFE---SSTAAGVRQAVILASGL 113

Query: 130 DTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189
           DTRAYRL     + V+E+D  +V+  KT    T  E G      R       TVA D+RE
Sbjct: 114 DTRAYRLTWPAGTTVYELDQPEVITFKT---DTLAELGASPSAERR------TVAIDLRE 164

Query: 190 NDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSS 235
            DW   LQ +G+ PE+ TVW  E LL     +    L +SI   S+
Sbjct: 165 -DWPAALQAAGFDPEQPTVWSAEGLLIYLPPEAQDRLFASITELSA 209

Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) (taxid: 561007)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp\|A0QKZ0\|Y4444_MYCA1 Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4444 OS=Mycobacterium avium (strain 104) GN=MAV_4444 PE=3 SV=1	Back alignment and function description

>sp\|A1T4S9\|Y1345_MYCVP Putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_1345 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_1345 PE=3 SV=1	Back alignment and function description

>sp\|Q73S87\|Y4189_MYCPA Putative S-adenosyl-L-methionine-dependent methyltransferase MAP_4189c OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_4189c PE=3 SV=1	Back alignment and function description

>sp\|A0QSH3\|Y1479_MYCS2 Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1479/MSMEI_1443 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_1479 PE=3 SV=1	Back alignment and function description

>sp\|A0QMX9\|Y5150_MYCA1 Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_5150 OS=Mycobacterium avium (strain 104) GN=MAV_5150 PE=3 SV=1	Back alignment and function description

>sp\|Q73U05\|Y3563_MYCPA Putative S-adenosyl-L-methionine-dependent methyltransferase MAP_3563 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_3563 PE=3 SV=1	Back alignment and function description

>sp\|A0QM57\|Y4873_MYCA1 Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 OS=Mycobacterium avium (strain 104) GN=MAV_4873 PE=3 SV=1	Back alignment and function description

>sp\|A0QSH4\|Y1480_MYCS2 Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480/MSMEI_1444 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_1480 PE=3 SV=1	Back alignment and function description

>sp\|A0QKY8\|Y4441_MYCA1 Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4441 OS=Mycobacterium avium (strain 104) GN=MAV_4441 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
224070174		335	predicted protein [Populus trichocarpa]	0.990	0.913	0.733	1e-139
147771521		332	hypothetical protein VITISV_038532 [Viti	0.983	0.915	0.722	1e-136
302142493		332	unnamed protein product [Vitis vinifera]	0.983	0.915	0.719	1e-135
225458285		352	PREDICTED: putative S-adenosyl-L-methion	0.983	0.863	0.719	1e-135
255538640		331	conserved hypothetical protein [Ricinus	0.983	0.918	0.704	1e-132
356510211		347	PREDICTED: putative S-adenosyl-L-methion	1.0	0.890	0.678	1e-131
356518890		347	PREDICTED: putative S-adenosyl-L-methion	1.0	0.890	0.678	1e-130
10177279		370	unnamed protein product [Arabidopsis tha	0.980	0.818	0.612	1e-114
16648883		344	Unknown protein [Arabidopsis thaliana] g	0.980	0.880	0.612	1e-114
79527881		348	Leucine carboxyl methyltransferase [Arab	0.980	0.870	0.612	1e-114

>gi\|224070174\|ref\|XP_002303129.1\| predicted protein [Populus trichocarpa] gi\|118486503\|gb\|ABK95091.1\| unknown [Populus trichocarpa] gi\|222844855\|gb\|EEE82402.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/334 (73%), Positives = 275/334 (82%), Gaps = 28/334 (8%)

Query: 1   MSDQENGLPENPQWQELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVI 60
           MSDQENGL E+PQW ELKL +LL TDTV+ LHATI ++WD L+R+ACQTAAGRA+WKHVI
Sbjct: 1   MSDQENGLQEDPQWLELKLPRLLYTDTVQGLHATIQSEWDSLRRSACQTAAGRALWKHVI 60

Query: 61  HDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREA 120
           HDP ADLLAGETYL++ HEKIK DRL NARE SGVILA+RTLWFDS+IEAAL+SFN  E 
Sbjct: 61  HDPFADLLAGETYLKSFHEKIKNDRLKNARETSGVILAVRTLWFDSKIEAALSSFNG-EG 119

Query: 121 QVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSL 180
           QVVLLGAGMD RAYRL+CLKESDVFEVDF +VL+VKT L++ A E  DE  HPR+TAKSL
Sbjct: 120 QVVLLGAGMDARAYRLSCLKESDVFEVDFPEVLEVKTTLLKAATETIDEHLHPRITAKSL 179

Query: 181 TTVAADIRENDWLEKLQLSGYKPEKNTVWVLE---------------------------V 213
             VAADIR NDWLEKLQ+SG+ PEKNTVWVLE                           V
Sbjct: 180 NRVAADIRNNDWLEKLQISGFVPEKNTVWVLEGILYYLSHSHAMQVLSIIADKCALARTV 239

Query: 214 LLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFN 273
           LLADFMN+PSTTLS+SIFHF SDWPD LLP+LGFS+V+LSQ+GDPDAHFGLMNDPLNLFN
Sbjct: 240 LLADFMNKPSTTLSNSIFHFYSDWPDHLLPSLGFSHVKLSQLGDPDAHFGLMNDPLNLFN 299

Query: 274 KLRSLPRSVQTHPDDGTPCRRLYLVQASGSPNQT 307
           KLRSLPRSVQTHPDDGTPC RLYLV+ASG P+Q+
Sbjct: 300 KLRSLPRSVQTHPDDGTPCCRLYLVEASGLPSQS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147771521\|emb\|CAN75691.1\| hypothetical protein VITISV_038532 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302142493\|emb\|CBI19696.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225458285\|ref\|XP_002282579.1\| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_1345-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255538640\|ref\|XP_002510385.1\| conserved hypothetical protein [Ricinus communis] gi\|223551086\|gb\|EEF52572.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356510211\|ref\|XP_003523833.1\| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_0093-like [Glycine max]	Back alignment and taxonomy information

>gi\|356518890\|ref\|XP_003528110.1\| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase Mb1758c-like [Glycine max]	Back alignment and taxonomy information

>gi\|10177279\|dbj\|BAB10632.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|16648883\|gb\|AAL24293.1\| Unknown protein [Arabidopsis thaliana] gi\|21536783\|gb\|AAM61115.1\| unknown [Arabidopsis thaliana] gi\|58652116\|gb\|AAW80883.1\| At5g42760 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|79527881\|ref\|NP_568611.2\| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi\|332007474\|gb\|AED94857.1\| Leucine carboxyl methyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
UNIPROTKB\|O53841		301	MT0851 "Putative S-adenosyl-L-	0.527	0.541	0.343	6.2e-10
UNIPROTKB\|P71987		312	MT1770 "Putative S-adenosyl-L-	0.631	0.625	0.286	1.9e-08
UNIPROTKB\|O86359		314	MT3874 "Putative S-adenosyl-L-	0.446	0.439	0.313	1.9e-08
UNIPROTKB\|P95073		301	Rv0725c "Uncharacterized prote	0.614	0.631	0.308	3.8e-08
UNIPROTKB\|P96823		310	MT0154 "Putative S-adenosyl-L-	0.546	0.545	0.305	7.8e-07
UNIPROTKB\|O53686		302	MT0293 "Putative S-adenosyl-L-	0.333	0.341	0.353	2.1e-06
DICTYBASE\|DDB_G0285065		529	DDB_G0285065 "leucine carboxyl	0.449	0.262	0.296	1.3e-05
UNIPROTKB\|O33293		296	MT2821 "Conserved protein" [My	0.462	0.483	0.294	0.00018
ZFIN\|ZDB-GENE-110714-2		673	lcmt2 "leucine carboxyl methyl	0.521	0.239	0.312	0.00068

UNIPROTKB\|O53841 MT0851 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0830/MT0851" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

 Score = 164 (62.8 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 66/192 (34%), Positives = 94/192 (48%)

Query:    38 QWDY---LQRTACQTAAGRAMWKH----VIHDPLADLLA---G-ETYLRNVHEKIKKD-- 84
             +WD    +  TA   AA RA+       +I DP A  L    G + Y R V  +I  +  
Sbjct:     8 RWDLATSVGATATMVAAQRALAADPRYALIDDPYAAPLVRAVGMDVYTRLVDWQIPVEGD 67

Query:    85 -RLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESD 143
                +  R  +G  +A RT +FD   +  L++ +S   Q V+L +G+D RAYRL     S 
Sbjct:    68 SEFDPQRMATG--MACRTRFFD---QFFLDATHSGIGQFVILASGLDARAYRLAWPVGSI 122

Query:   144 VFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKP 203
             V+EVD  +V++ KTA   T  + G E   P   A    TVA D+R+ DW   LQ +G+ P
Sbjct:   123 VYEVDMPEVIEFKTA---TLSDLGAE---P---ATERRTVAVDLRD-DWATALQTAGFDP 172

Query:   204 EKNTVWVLEVLL 215
             +    W  E LL
Sbjct:   173 KVPAAWSAEGLL 184

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB\|P71987 MT1770 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv1729c/MT1770" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|O86359 MT3874 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv3767c/MT3874" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|P95073 Rv0725c "Uncharacterized protein" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|P96823 MT0154 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0146" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|O53686 MT0293 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0281/MT0293" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285065 DDB_G0285065 "leucine carboxyl methyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|O33293 MT2821 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-110714-2 lcmt2 "leucine carboxyl methyltransferase 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_II1198	SubName- Full=Putative uncharacterized protein; (335 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		309
pfam04072		175	pfam04072, LCM, Leucine carboxyl methyltransferase	8e-35
COG3315		297	COG3315, COG3315, O-Methyltransferase involved in	3e-25
TIGR00027		260	TIGR00027, mthyl_TIGR00027, methyltransferase, TIG	6e-22

>gnl\|CDD\|217872 pfam04072, LCM, Leucine carboxyl methyltransferase	Back alignment and domain information

 Score =  124 bits (313), Expect = 8e-35
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 21/178 (11%)

Query: 46  ACQTAAGRAMW----KHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRT 101
           A  TAA RA+       ++ DP A  L     +R +     K R   A +++  I A RT
Sbjct: 1   ALITAAARALESRRPDPLLDDPYAAEL-----VRAIDYDFSKLRPGGAPQLNLGI-AART 54

Query: 102 LWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKE-SDVFEVDFSQVLQVKTALI 160
            +FD  + A L + +    QVV+LGAG+DTRAYRL+        FEVD  +V++ K  L+
Sbjct: 55  RFFDDFLRAFLAA-HPGARQVVILGAGLDTRAYRLDWPAGGVRWFEVDLPEVIEFKRRLL 113

Query: 161 QTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADF 218
             A      ++           VA D+R++DWL+ L+ +G+ P + T++V E LL   
Sbjct: 114 PEAGARPPARRR---------YVAVDLRDDDWLDALRAAGFDPSRPTLFVAEGLLMYL 162

Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence. Length = 175

>gnl\|CDD\|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		309
KOG2918		335	consensus Carboxymethyl transferase [Posttranslati	100.0
COG3315		297	O-Methyltransferase involved in polyketide biosynt	100.0
TIGR00027		260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	100.0
PF04072		183	LCM: Leucine carboxyl methyltransferase; InterPro:	100.0
PF04672		267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.6

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=7.1e-45  Score=336.82  Aligned_cols=226  Identities=20%  Similarity=0.276  Sum_probs=192.7

Q ss_pred             cccccccCcchHHHHHHHHHHHhhhhcCCCCCHhHHhhhcchhhhhhhhhhhhhhhcccccccchhhhhhHHHHHHHHHH
Q 021686           31 LHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEA  110 (309)
Q Consensus        31 ~~~~v~~t~d~v~~Ta~~~a~~RA~e~~~~~Dp~A~~fv~~~~~~~~~~~~~~~~~in~~~~~~~~~~~Rt~~iD~~v~~  110 (309)
                      -+.+||+|||+.+......     ...||+.||++..|+...       ..++.|.||+|      |++|+..|+..|++
T Consensus        19 ~d~~vq~Tnddss~ck~~~-----~~~gy~~d~~~~~~~~~~-------~~rr~P~inRG------y~~R~~aI~~~v~~   80 (335)
T KOG2918|consen   19 ADSAVQGTNDDSSLCKRSA-----TKSGYWHDPFIKLFVPSK-------KARRAPEINRG------YWARTMAIRHAVRA   80 (335)
T ss_pred             cchhhhhccchhhhhhhHH-----HhcCCccCchhhhhcccc-------ccCCCceecch------hhHHHHHHHHHHHH
Confidence            3568999999988555433     345999999999999742       25678999984      89999999999999


Q ss_pred             HHhhcCCCccEEEEeCccCccchhhccC---CCCceEEEecchhhHHHHHHHHHhhhccCC----------CCCCCccCC
Q 021686          111 ALNSFNSREAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQTAMEFGD----------EQQHPRMTA  177 (309)
Q Consensus       111 fl~~~~~g~~QVV~LGAGlDTr~~RL~~---~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~----------~~~~~~l~s  177 (309)
                      ||++.. +++||||||||+||++|||..   ...+.|||||||+++++|..++.+.+..++          ...+..+++
T Consensus        81 Fl~~~~-~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s  159 (335)
T KOG2918|consen   81 FLEQTD-GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHS  159 (335)
T ss_pred             HHHhcC-CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceecc
Confidence            999864 889999999999999999975   368999999999999999966665554321          123567899


Q ss_pred             CceEEEeccCCCCcHH-HHHHhcCCCCCCcEEEEecccccccCccc--------cccCCccEEEecCCCCcccCCCCchh
Q 021686          178 KSLTTVAADIRENDWL-EKLQLSGYKPEKNTVWVLEVLLADFMNQP--------STTLSSSIFHFSSDWPDRLLPTLGFS  248 (309)
Q Consensus       178 ~~y~~v~~DL~~~~~~-~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~--------a~~~~~~~f~~y~~~~e~i~p~d~Fg  248 (309)
                      .+|+.++|||++.+.+ ++|...|+|++.||+||+||||+|+.++.        ++.|++++|+.|    ||++|+|+||
T Consensus       160 ~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~Y----EQi~~~D~Fg  235 (335)
T KOG2918|consen  160 GRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNY----EQINPNDRFG  235 (335)
T ss_pred             CceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEE----eccCCCChHH
Confidence            9999999999998766 47888999999999999999999776654        467999999999    9999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCChhhhhhhhcCCCcccccCCCCCCCceeEE
Q 021686          249 NVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLY  296 (309)
Q Consensus       249 ~~m~~nl~e~~~~fg~~~~~~~~~l~~~g~~~~~~~~p~~~~~~~R~~  296 (309)
                      ++|++|++++++       |          +.++..|||+++|++||.
T Consensus       236 ~vM~~nlk~r~~-------~----------L~gle~y~s~Esq~~Rf~  266 (335)
T KOG2918|consen  236 KVMLANLKRRGC-------P----------LHGLETYNSIESQRSRFL  266 (335)
T ss_pred             HHHHHHHHhcCC-------C----------CchhhhcccHHHHHHHHH
Confidence            999999998884       3          999999999999999984

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family	Back alignment and domain information

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues	Back alignment and domain information

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		309
2ckd_A		310	Crystal Structure Of Ml2640 From Mycobacterium Lepr		6e-08

>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae Length = 310

Back alignment and structure

Iteration: 1

Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 16/127 (12%) Query: 98 AIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKT 157 A+RT +FD+ N+ Q V+L +G+D+RAYRL+ + V+E+D +VL K+ Sbjct: 85 AVRTNFFDTYFN---NAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKS 141 Query: 158 ALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLAD 217 + +H V D+R+ DW L+ +G+ P T W+ E LL Sbjct: 142 TTL---------AEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLL-- 189 Query: 218 FMNQPST 224 M P+T Sbjct: 190 -MYLPAT 195

PyMOL of 2ckd

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		309
2uyo_A		310	Hypothetical protein ML2640; putative methyltransf	1e-23
1rjd_A		334	PPM1P, carboxy methyl transferase for protein phos	2e-19
3iei_A		334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	3e-19
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Length = 310	Back alignment and structure

 Score = 97.5 bits (242), Expect = 1e-23
 Identities = 58/305 (19%), Positives = 94/305 (30%), Gaps = 61/305 (20%)

Query: 44  RTACQTAAGRAMW----KHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREIS------ 93
            TA   AA RA        +I DP A LL   T    + E +    +    E        
Sbjct: 16  TTAVMVAAARAAETDRPDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAA 75

Query: 94  -----GVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVD 148
                    A+RT +FD+    A+        Q V+L +G+D+RAYRL+    + V+E+D
Sbjct: 76  MVEHMRSYQAVRTNFFDTYFNNAVID---GIRQFVILASGLDSRAYRLDWPTGTTVYEID 132

Query: 149 FSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTV 208
             +VL  K+  +          +H          V  D+R++ W   L+ +G+ P   T 
Sbjct: 133 QPKVLAYKSTTL---------AEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPSARTA 182

Query: 209 WVLE--------------------------VLLADFMNQPSTTLSSSIFHFSSDWPDRLL 242
           W+ E                           +  +            +        D L 
Sbjct: 183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALG 242

Query: 243 PTLGFSNVRLSQIGDPDAH-------FGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRL 295
                    L    +  A         G      +  +++R + R     P         
Sbjct: 243 FEQAVDVQELIYHDENRAVVADWLNRHGWRATAQSAPDEMRRVGRWGDGVPMADDKDAFA 302

Query: 296 YLVQA 300
             V A
Sbjct: 303 EFVTA 307

PyMOL of 2uyo

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Length = 334	Back alignment and structure

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Length = 334	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		309
3iei_A		334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	100.0
1rjd_A		334	PPM1P, carboxy methyl transferase for protein phos	100.0
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2uyo_A		310	Hypothetical protein ML2640; putative methyltransf	100.0
3giw_A		277	Protein of unknown function DUF574; rossmann-fold	98.06
2qe6_A		274	Uncharacterized protein TFU_2867; putative methylt	97.71
4a6d_A		353	Hydroxyindole O-methyltransferase; melatonin, circ	89.45
3gwz_A		369	MMCR; methyltransferase, mitomycin, S-adenosyl met	87.33
3i53_A		332	O-methyltransferase; CO-complex, rossmann-like fol	85.74
4hc4_A		376	Protein arginine N-methyltransferase 6; HRMT1L6, S	85.4
4gek_A		261	TRNA (CMO5U34)-methyltransferase; structural genom	83.37

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*	Back alignment and structure

Probab=100.00  E-value=2.8e-49  Score=376.84  Aligned_cols=240  Identities=20%  Similarity=0.207  Sum_probs=189.3

Q ss_pred             cccccccchhhhhhccccccccCcchHHHHHHHHHHHhhhhcCCCCCHhHHhhhcchhhhhhhhhhhhhhhcccccccch
Q 021686           16 ELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGV   95 (309)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~v~~t~d~v~~Ta~~~a~~RA~e~~~~~Dp~A~~fv~~~~~~~~~~~~~~~~~in~~~~~~~   95 (309)
                      |-.||.+|+.++....+.+||+||++.+.++++     |++.|||+|||+++||++..       .++.|+||+      
T Consensus         7 ~~~~~~~~~~~~~~~~d~~V~~T~~da~~sk~s-----av~~gY~~Dpf~~~Fv~~~~-------~rr~P~inr------   68 (334)
T 3iei_A            7 ESSITSCCSTSSMDENDEGVRGTCEDASLCKRF-----AVSIGYWHDPYIQHFVRLSK-------ERKAPEINR------   68 (334)
T ss_dssp             ------------------CTTHHHHHHHHHHHH-----HHHHTSSCCSSGGGTSCCCC-------SCCCHHHHH------
T ss_pred             cccCCcccccccCCCchhhhhcccHHHHHHHHH-----HHHcCCCCCHHHHHHcCccc-------CCCCchHHH------
Confidence            556899999988888899999999999988875     45669999999999997642       367899998      


Q ss_pred             hhhhhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchhhccCC--CCceEEEecchhhHHHHHHHHHhhhccCC-----
Q 021686           96 ILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCL--KESDVFEVDFSQVLQVKTALIQTAMEFGD-----  168 (309)
Q Consensus        96 ~~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~~--~~~~~fEvD~P~vi~~K~~~l~~~~~~~~-----  168 (309)
                      |+++||++||+.|++||++++ +.+||||||||||||+|||.++  .+++|||||+|+|+++|+++|.+.+.+..     
T Consensus        69 G~~~Rt~~iD~~v~~fl~~~~-~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~  147 (334)
T 3iei_A           69 GYFARVHGVSQLIKAFLRKTE-CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILEL  147 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccc
Confidence            489999999999999999874 5789999999999999999874  57999999999999999999997543210     


Q ss_pred             ------CCCCCccCCCceEEEeccCCCCcHH-HHHHhcCCCCCCcEEEEecccccccCcccc--------ccCCccEEEe
Q 021686          169 ------EQQHPRMTAKSLTTVAADIRENDWL-EKLQLSGYKPEKNTVWVLEVLLADFMNQPS--------TTLSSSIFHF  233 (309)
Q Consensus       169 ------~~~~~~l~s~~y~~v~~DL~~~~~~-~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~a--------~~~~~~~f~~  233 (309)
                            ...+..+.+++|++|++||++.+|+ +.|.++|+|++.|||||+|||+||+.+.++        ..|++..|+.
T Consensus       148 ~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~  227 (334)
T 3iei_A          148 HSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFIN  227 (334)
T ss_dssp             SSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             ccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEE
Confidence                  0112234578999999999998787 578889999999999999999998777543        4688899999


Q ss_pred             cCCCCcccCCCCchhHHHHhhcCCCCCCCCCCCChhhhhhhhcCCCcccccCCCCCCCceeE
Q 021686          234 SSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRL  295 (309)
Q Consensus       234 y~~~~e~i~p~d~Fg~~m~~nl~e~~~~fg~~~~~~~~~l~~~g~~~~~~~~p~~~~~~~R~  295 (309)
                      |    |++.|+|+||++|++|+..+|+       |          +.++..||++++|.+||
T Consensus       228 y----E~i~p~d~fg~~M~~~l~~~g~-------p----------l~sl~~y~t~~~~~~r~  268 (334)
T 3iei_A          228 Y----EQVNMGDRFGQIMIENLRRRQC-------D----------LAGVETCKSLESQKERL  268 (334)
T ss_dssp             E----EECCTTSHHHHHHHHHHHTTTC-------C----------CTTGGGGGCHHHHHHHH
T ss_pred             E----eccCCCCHHHHHHHHHHHHhCC-------C----------CcccccCCCHHHHHHHH
Confidence            9    9999999999999999998884       2          78888999988888877

PyMOL of 3iei

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*	Back alignment and structure

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*	Back alignment and structure

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*	Back alignment and structure

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}	Back alignment and structure

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*	Back alignment and structure

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*	Back alignment and structure

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*	Back alignment and structure

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}	Back alignment and structure

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		309
d1rjda_		328	c.66.1.37 (A:) Leucine carboxy methyltransferase P	2e-22
d2uyoa1		297	c.66.1.57 (A:14-310) Putative methyltransferase ML	8e-21

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (230), Expect = 2e-22
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 23/200 (11%)

Query: 99  IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRL-NCLKESDVFEVDFSQVLQVKT 157
           +RT+  D+ I   L +    + QVV LG G D R   L          ++D+++ +++K 
Sbjct: 79  LRTVGIDAAILEFLVANE--KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKN 136

Query: 158 ALIQTA---------MEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTV 208
           ++++ +          +    +    +        A D+ +     +L     K E  T+
Sbjct: 137 SILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTI 196

Query: 209 WVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDP 268
            + E LL    N  S  L         +          + +        P+  FG +   
Sbjct: 197 VISECLLCYMHNNESQLL--------INTIMSKFSHGLWISYDPIGGSQPNDRFGAIM-- 246

Query: 269 LNLFNKLRSLP-RSVQTHPD 287
            +   + R+L   ++ T+  
Sbjct: 247 QSNLKESRNLEMPTLMTYNS 266

PyMOL of d1rjda_

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Length = 297	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		309
d1rjda_		328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	100.0
d2uyoa1		297	Putative methyltransferase ML2640 {Mycobacterium l	100.0
d1tw3a2		253	Carminomycin 4-O-methyltransferase {Streptomyces p	93.96
d1qzza2		256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	91.16
d1oria_		316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	86.7
d2fyta1		311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	81.94
d1g6q1_		328	Arginine methyltransferase, HMT1 {Baker's yeast (S	80.08
d1im8a_		225	Hypothetical protein HI0319 (YecO) {Haemophilus in	80.04

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-48  Score=366.61  Aligned_cols=230  Identities=16%  Similarity=0.123  Sum_probs=188.4

Q ss_pred             ccccccCcchHHHHHHHHHHHhhhhcCCCCCHhHHhhhcchhhhh----------h------------hhhhhhhhhccc
Q 021686           32 HATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRN----------V------------HEKIKKDRLNNA   89 (309)
Q Consensus        32 ~~~v~~t~d~v~~Ta~~~a~~RA~e~~~~~Dp~A~~fv~~~~~~~----------~------------~~~~~~~~~in~   89 (309)
                      +++||+||+++..++.     +|++.||+.|||+..|+.......          +            ....++.|+|||
T Consensus         1 D~~Vq~T~~da~~sK~-----SAv~~GY~~d~~~~~f~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~PlINr   75 (328)
T d1rjda_           1 ERIIQQTDYDALSCKL-----AAISVGYLPSSGLQRLSVDLSKKYTEWHRSYLITLKKFSRRAFGKVDKAMRSSFPVMNY   75 (328)
T ss_dssp             CHHHHTHHHHHHHHHH-----HHHHHTSCCCTTTTTCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCHHHHH
T ss_pred             CchhhcccHHHHHHHH-----HHHHcCCCCchhHHHhhhhccccccccccccccccccccccccccccccccccCCchhh
Confidence            3568888877766665     456779999999999985322110          0            001235689998


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHhhcCCCccEEEEeCccCccchhhccC-CCCceEEEecchhhHHHHHHHHHhhhccCC
Q 021686           90 REISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGD  168 (309)
Q Consensus        90 ~~~~~~~~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGAGlDTr~~RL~~-~~~~~~fEvD~P~vi~~K~~~l~~~~~~~~  168 (309)
                      |      |++||++||.+|++||++++  .+||||||||||||+|||.. .++++|||||+|++++.|+++|++++.+..
T Consensus        76 G------y~~Rt~~id~~v~~Fl~~~~--~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~  147 (328)
T d1rjda_          76 G------TYLRTVGIDAAILEFLVANE--KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRI  147 (328)
T ss_dssp             H------HHHHHHHHHHHHHHHHHHCS--SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHH
T ss_pred             h------HHHHHHHHHHHHHHHHHHCC--CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhh
Confidence            4      89999999999999999875  68999999999999999964 678999999999999999999998754311


Q ss_pred             ---------CCCCCccCCCceEEEeccCCCCcHHHHHHhcCCCCCCcEEEEecccccccCccc--------cccCCccEE
Q 021686          169 ---------EQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQP--------STTLSSSIF  231 (309)
Q Consensus       169 ---------~~~~~~l~s~~y~~v~~DL~~~~~~~~L~~~G~d~~~Ptl~i~Egvl~Y~~~~~--------a~~~~~~~f  231 (309)
                               ...+..+.+++|++|+|||++.+|++.|.++|+|++.|||||+|||++|+.+..        +..|+++.|
T Consensus       148 ~l~~~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~  227 (328)
T d1rjda_         148 SLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLW  227 (328)
T ss_dssp             HHTCCSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEE
T ss_pred             hccccccccccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceE
Confidence                     112335668999999999999999999999999999999999999999877654        457899999


Q ss_pred             EecCCCCccc---CCCCchhHHHHhhcCC-CCCCCCCCCChhhhhhhhcCCCcccccCCCCCCCceeE
Q 021686          232 HFSSDWPDRL---LPTLGFSNVRLSQIGD-PDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRL  295 (309)
Q Consensus       232 ~~y~~~~e~i---~p~d~Fg~~m~~nl~e-~~~~fg~~~~~~~~~l~~~g~~~~~~~~p~~~~~~~R~  295 (309)
                      +.|    ||+   .|+|+||++|++|+.+ +++.                 +.++..|||+++|.+||
T Consensus       228 i~Y----E~i~~~~p~D~FG~~M~~nl~~~r~~~-----------------l~~~~~~~t~~~~~~r~  274 (328)
T d1rjda_         228 ISY----DPIGGSQPNDRFGAIMQSNLKESRNLE-----------------MPTLMTYNSKEKYASRW  274 (328)
T ss_dssp             EEE----EECCCCSTTCCHHHHHHHHHHHHHCCC-----------------CTTTTTTCSHHHHHGGG
T ss_pred             EEe----ccCCCCCCCChHHHHHHHHHHHhcCCC-----------------CCccccCCCHHHHHHHH
Confidence            999    999   5789999999999975 6632                 78999999999999987

PyMOL of d1rjda_

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}	Back information, alignment and structure

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}	Back information, alignment and structure

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}	Back information, alignment and structure

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure