Citrus Sinensis ID: 021700

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
ccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
ccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc
MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIihkprerssfTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNsinddeanskgwlgrkgdnsnadtiAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRamprrklkretvsksadistpnksdireldeiqpepltVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
marirdrtedfkdvarhtavslgydeskLAAIMASFIihkprersSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDainramprrklkretvsksadistpnksdireldeiqpEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNtssrtflllflfvltfsilflDWYS
*************VARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVE***********IEHEVTAFIKTCKEQIDILQNSI*********WL********ADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI**************************************************RALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN*****AIRRNTSSRTFLLLFLFVLTFSILFLDWY*
*ARIRDRTEDFKDV**********************************KAALKTLESIGALEQFILN*********************EVTAFIKTCKEQIDI*********************************VVLILSEKLHS**************************************************************************************KMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
**********FKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM**********IEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPR******************KSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
*****DRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDE****GWL******SNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAM******************************QPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
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MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFxxxxxxxxxxxxxxxxxxxxxSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
P59277310 Syntaxin-81 OS=Arabidopsi yes no 0.983 0.980 0.730 1e-117
Q4VBI7314 Syntaxin-18 OS=Danio reri yes no 0.802 0.789 0.300 4e-33
Q9P2W9335 Syntaxin-18 OS=Homo sapie yes no 0.812 0.749 0.282 4e-29
Q68FW4334 Syntaxin-18 OS=Rattus nor yes no 0.825 0.763 0.293 4e-29
Q5REB4335 Syntaxin-18 OS=Pongo abel yes no 0.812 0.749 0.282 5e-29
Q8VDS8334 Syntaxin-18 OS=Mus muscul yes no 0.825 0.763 0.277 1e-28
O94531319 Syntaxin ufe1 OS=Schizosa yes no 0.686 0.664 0.267 5e-07
>sp|P59277|SYP81_ARATH Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2 Back     alignment and function desciption
 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/315 (73%), Positives = 264/315 (83%), Gaps = 11/315 (3%)

Query: 1   MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGA 60
           M+R RDRTEDFKD  R++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+SI  
Sbjct: 1   MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61  LEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLG 120
           LE F+L HRKDYV++ RTTEQE+DSIE EV AFIK CKEQIDIL NSI ++EANSKGWLG
Sbjct: 61  LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query: 121 RKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
              DN NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  V K
Sbjct: 121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR--VIK 178

Query: 181 SADISTPNKSDIRELDEIQPEPL------TVQQQLLDDETRALQVELTSLLDAVQQTETK 234
            A   TP  + +   + I+P+ +        QQQLLDDET+ALQVEL++LLD  +QTETK
Sbjct: 179 EA---TPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETK 235

Query: 235 MVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLF 294
           MVE+SALNHLM+TH+L QAQQIE LY+QAVEATKNVELGNKELSQAI+RN+SSRTFLLLF
Sbjct: 236 MVEMSALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLF 295

Query: 295 LFVLTFSILFLDWYS 309
            FVLTFS+LFLDWYS
Sbjct: 296 FFVLTFSVLFLDWYS 310
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q4VBI7|STX18_DANRE Syntaxin-18 OS=Danio rerio GN=stx18 PE=2 SV=1 Back     alignment and function description
>sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1 Back     alignment and function description
>sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1 Back     alignment and function description
>sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1 Back     alignment and function description
>sp|Q8VDS8|STX18_MOUSE Syntaxin-18 OS=Mus musculus GN=Stx18 PE=2 SV=2 Back     alignment and function description
>sp|O94531|UFE1_SCHPO Syntaxin ufe1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufe1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
224112613311 predicted protein [Populus trichocarpa] 1.0 0.993 0.826 1e-138
296086109309 unnamed protein product [Vitis vinifera] 1.0 1.0 0.792 1e-132
255564009309 Syntaxin-81, putative [Ricinus communis] 1.0 1.0 0.796 1e-131
356549565309 PREDICTED: syntaxin-81-like [Glycine max 1.0 1.0 0.776 1e-129
388499818309 unknown [Lotus japonicus] 1.0 1.0 0.776 1e-129
358248560309 uncharacterized protein LOC100801587 [Gl 1.0 1.0 0.770 1e-129
449441332308 PREDICTED: syntaxin-81-like [Cucumis sat 0.996 1.0 0.773 1e-129
224098503301 predicted protein [Populus trichocarpa] 0.967 0.993 0.765 1e-124
388518669306 unknown [Lotus japonicus] 0.990 1.0 0.757 1e-124
297847548310 hypothetical protein ARALYDRAFT_892151 [ 1.0 0.996 0.754 1e-123
>gi|224112613|ref|XP_002316241.1| predicted protein [Populus trichocarpa] gi|222865281|gb|EEF02412.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/311 (82%), Positives = 281/311 (90%), Gaps = 2/311 (0%)

Query: 1   MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGA 60
           MA+IRDRTEDFKD  RHTAVSLGY+E+KLAAIMASFIIHKPR+RS FTKAALKTLESIGA
Sbjct: 1   MAKIRDRTEDFKDAVRHTAVSLGYNEAKLAAIMASFIIHKPRQRSPFTKAALKTLESIGA 60

Query: 61  LEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDYV++ RTTEQERDSIE EVTAFIK CKEQIDIL++SIN++EAN+KGWLG
Sbjct: 61  LEQFMLKHRKDYVDLHRTTEQERDSIEQEVTAFIKACKEQIDILKDSINNEEANTKGWLG 120

Query: 121 RKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRET--V 178
            K D SNADTIAHKHGVVLILSEKLHSVTA+FDQ+RAIRFQDAIN+ +PRRK+ R     
Sbjct: 121 IKADTSNADTIAHKHGVVLILSEKLHSVTARFDQLRAIRFQDAINKRIPRRKVNRAANKN 180

Query: 179 SKSADISTPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEV 238
           + S D S  N  D  E DEIQPEPL VQQQLLDDETRALQVELTSLLDAVQ+TETKMVE+
Sbjct: 181 TSSVDSSKTNNLDFMEPDEIQPEPLRVQQQLLDDETRALQVELTSLLDAVQETETKMVEM 240

Query: 239 SALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL 298
           SALNHLMSTH+L QAQQIE LYEQAVEATKNVELGNKELSQA++RN+SSRTFLLLFLFVL
Sbjct: 241 SALNHLMSTHVLQQAQQIELLYEQAVEATKNVELGNKELSQAVQRNSSSRTFLLLFLFVL 300

Query: 299 TFSILFLDWYS 309
           TFSILFLDWYS
Sbjct: 301 TFSILFLDWYS 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086109|emb|CBI31550.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564009|ref|XP_002523004.1| Syntaxin-81, putative [Ricinus communis] gi|223537816|gb|EEF39434.1| Syntaxin-81, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356549565|ref|XP_003543163.1| PREDICTED: syntaxin-81-like [Glycine max] Back     alignment and taxonomy information
>gi|388499818|gb|AFK37975.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|358248560|ref|NP_001239902.1| uncharacterized protein LOC100801587 [Glycine max] gi|255641149|gb|ACU20852.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449441332|ref|XP_004138436.1| PREDICTED: syntaxin-81-like [Cucumis sativus] gi|449516645|ref|XP_004165357.1| PREDICTED: syntaxin-81-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224098503|ref|XP_002311197.1| predicted protein [Populus trichocarpa] gi|222851017|gb|EEE88564.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388518669|gb|AFK47396.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297847548|ref|XP_002891655.1| hypothetical protein ARALYDRAFT_892151 [Arabidopsis lyrata subsp. lyrata] gi|297337497|gb|EFH67914.1| hypothetical protein ARALYDRAFT_892151 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
TAIR|locus:2017632310 SYP81 "syntaxin of plants 81" 0.996 0.993 0.688 5.1e-106
ZFIN|ZDB-GENE-050522-397314 stx18 "syntaxin 18" [Danio rer 0.847 0.834 0.290 2.9e-25
UNIPROTKB|E1C1M8333 STX18 "Uncharacterized protein 0.472 0.438 0.294 1.6e-22
UNIPROTKB|J9P4H8336 STX18 "Uncharacterized protein 0.352 0.324 0.292 9e-21
UNIPROTKB|Q9P2W9335 STX18 "Syntaxin-18" [Homo sapi 0.352 0.325 0.292 1.1e-20
UNIPROTKB|E2RGW4332 STX18 "Uncharacterized protein 0.275 0.256 0.337 2.7e-20
RGD|1310058334 Stx18 "syntaxin 18" [Rattus no 0.352 0.326 0.300 5e-20
UNIPROTKB|Q68FW4334 Stx18 "Syntaxin-18" [Rattus no 0.352 0.326 0.300 5e-20
UNIPROTKB|D6RF48308 STX18 "Syntaxin-18" [Homo sapi 0.595 0.597 0.253 1.4e-18
UNIPROTKB|I3L7R7243 LOC100621709 "Uncharacterized 0.695 0.884 0.267 8.8e-15
TAIR|locus:2017632 SYP81 "syntaxin of plants 81" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 214/311 (68%), Positives = 247/311 (79%)

Query:     1 MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGA 60
             M+R RDRTEDFKD  R++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+SI  
Sbjct:     1 MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query:    61 LEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLG 120
             LE F+L HRKDYV++ RTTEQE+DSIE EV AFIK CKEQIDIL NSI ++EANSKGWLG
Sbjct:    61 LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query:   121 RKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
                DN NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  + +
Sbjct:   121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR-VIKE 179

Query:   181 SADISTP-NKSDIRELDEIQPEPLTVQQQ-LLDDETRALQVELTSLLDAVQQTETKMVEV 238
             +  I+T    S+  E DEIQ +P  +QQQ LLDDET+ALQVEL++LLD  +QTETKMVE+
Sbjct:   180 ATPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEM 239

Query:   239 SALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNXXXXXXXXXXXXXX 298
             SALNHLM+TH+L QAQQIE LY+QAVEATKNVELGNKELSQAI+RN              
Sbjct:   240 SALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFFVL 299

Query:   299 XXXXXXXDWYS 309
                    DWYS
Sbjct:   300 TFSVLFLDWYS 310
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
ZFIN|ZDB-GENE-050522-397 stx18 "syntaxin 18" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1M8 STX18 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9P4H8 STX18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2W9 STX18 "Syntaxin-18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGW4 STX18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310058 Stx18 "syntaxin 18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q68FW4 Stx18 "Syntaxin-18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D6RF48 STX18 "Syntaxin-18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7R7 LOC100621709 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P59277SYP81_ARATHNo assigned EC number0.73010.98380.9806yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00101883
hypothetical protein (312 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_X0143
SubName- Full=Putative uncharacterized protein; (301 aa)
     •• 0.835
estExt_fgenesh4_pg.C_LG_XVIII1135
Ca2+ antiporter/cation exchanger (239 aa)
     •• 0.811
eugene3.01580030
hypothetical protein (219 aa)
     •  0.800
estExt_fgenesh4_pm.C_LG_III0135
hypothetical protein (218 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
pfam1049686 pfam10496, Syntaxin-18_N, SNARE-complex protein Sy 6e-08
>gnl|CDD|220783 pfam10496, Syntaxin-18_N, SNARE-complex protein Syntaxin-18 N-terminus Back     alignment and domain information 
 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 5  RDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQF 64
           D T  FK   +    +     +       S I +K + +  F K A +    I +L  F
Sbjct: 1  TDLTPLFKASVKTVRDASK---ALSVPEDRSNIPNKTKPKDEFLKEAYRINSHITSLLTF 57

Query: 65 ILNHRKDYV-------EMQRTTEQERDSI 86
          +   RK Y+          + T+ ERDSI
Sbjct: 58 LKEIRKAYLSTTTHLKSSSKMTDSERDSI 86

This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes. Length = 86

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.96
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.88
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.87
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.76
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 99.36
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.31
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.14
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 98.98
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.34
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.22
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 98.2
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 97.9
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.21
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 96.77
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.55
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 96.26
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 95.77
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 95.72
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 95.65
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 94.98
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 94.41
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 93.75
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 93.52
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 93.03
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 92.99
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 92.61
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 90.9
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 90.57
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 86.69
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 85.46
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-39  Score=281.98  Aligned_cols=290  Identities=19%  Similarity=0.227  Sum_probs=217.2

Q ss_pred             CccCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChH
Q 021700            2 ARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQ   81 (309)
Q Consensus         2 ~~~~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~   81 (309)
                      |+++|||.||+++++++......+.-   ....+...+...+.++|.+.|..|.++|..+..+|.+|  +.|++.++.++
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~---~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kL--a~lAKrks~f~   75 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGV---NQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKL--AQLAKRKSLFD   75 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhcccc---ccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccc
Confidence            56999999999999999885321111   00011123445567899999999999999999999999  88999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021700           82 ERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQ  161 (309)
Q Consensus        82 erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k  161 (309)
                      ||..-..+++.+|+   +.|..|+..+..++...+ .-|..   ++.+...|..+||..|..+|.++++.|+++++.|.+
T Consensus        76 Dr~VeI~eLT~iik---qdi~sln~~i~~Lqei~~-~~gn~---s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rte  148 (311)
T KOG0812|consen   76 DRPVEIQELTFIIK---QDITSLNSQIAQLQEIVK-ANGNL---SNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTE  148 (311)
T ss_pred             CcchhhHHHHHHHh---cchHHHHHHHHHHHHHHH-Hhccc---cchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99988888888888   777777777765544321 11221   225678999999999999999999999999999999


Q ss_pred             HHHHhcCccccccccccC-C--CCCCCCC----C----C--CCcc----ccccCCCCcc-hHHHHHHHHHhHHHHHHHHH
Q 021700          162 DAINRAMPRRKLKRETVS-K--SADISTP----N----K--SDIR----ELDEIQPEPL-TVQQQLLDDETRALQVELTS  223 (309)
Q Consensus       162 ~~~~~~~~r~~~~~~~~~-~--~~~~~~~----~----~--~~~~----~~~~~~~~~~-~~q~q~~~~en~~l~~~~~~  223 (309)
                      .+++.+.++.++....+. +  |..+.+.    +    .  ++..    ..+...+..+ ++|++++++.    .+|+++
T Consensus       149 nmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es----~~Y~Q~  224 (311)
T KOG0812|consen  149 NMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALLDES----DEYVQE  224 (311)
T ss_pred             HHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHHHHH----HHHHHH
Confidence            998877655555442111 1  2211100    0    0  0000    0111112222 3344444433    489999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHH
Q 021700          224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL-TFSI  302 (309)
Q Consensus       224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~-~~~l  302 (309)
                      |..++++||.+|.||++||++||+||.+|||+|.|||+|++++..||+.|+.+|.|+.++.+++||+++.||+++ +|+|
T Consensus       225 R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFfl  304 (311)
T KOG0812|consen  225 RAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFL  304 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888764 6666


Q ss_pred             HHHhh
Q 021700          303 LFLDW  307 (309)
Q Consensus       303 lfl~~  307 (309)
                      +|+-|
T Consensus       305 vfvlf  309 (311)
T KOG0812|consen  305 VFVLF  309 (311)
T ss_pred             HHHHh
Confidence            66655

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 6e-07
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 2e-05
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 8e-05
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 58/277 (20%)

Query: 67  NHRKDYVEMQRTTEQERDSIEHEVTAFIKT--CKEQIDILQNSINDDEANSKGWLGRKGD 124
           +H  D+ E      Q +D +     AF+    CK+  D+ ++ ++ +E      +  K  
Sbjct: 4   HHHMDF-ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDA 60

Query: 125 NSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMP--RRKLKRETVSKSA 182
            S    +         L  K   +  +F        ++ +          +K E    S 
Sbjct: 61  VSGTLRL------FWTLLSKQEEMVQKF-------VEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 183 D----ISTPNK--SDIRELDEIQ---PEPLTVQQQLLDDETRALQVEL--------TSL- 224
                I   ++  +D +   +      +P    +Q L +   A  V +        T + 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 225 LDAVQQTETKMV---EVSALN--HLMSTH-ILHQAQ----QIEHLYEQAVEATKNVELGN 274
           LD     + +     ++  LN  +  S   +L   Q    QI+  +    + + N++L  
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 275 KELSQAIRRNTSSRTFLLLFLFVLTFSILFLD--WYS 309
             +   +RR        LL        +L L     +
Sbjct: 228 HSIQAELRR--------LLKSKPYENCLLVLLNVQNA 256
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.93
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.93
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.89
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.84
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.8
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.77
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.77
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.75
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.72
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.69
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.58
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 98.77
1s94_A180 S-syntaxin; three helix bundle, structural plastic 98.35
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.53
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.36
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.36
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.34
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 96.22
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 96.17
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.03
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 95.88
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.68
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.68
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 95.4
3b5n_D64 Protein transport protein SEC9; snare complex, syn 95.22
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.71
3b5n_C70 Protein transport protein SEC9; snare complex, syn 92.99
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 92.25
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 91.8
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.93  E-value=1.2e-26  Score=210.48  Aligned_cols=232  Identities=13%  Similarity=0.131  Sum_probs=146.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHh----hHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021700           40 KPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQE----RDS---IEHEVTAFIKTCKEQIDILQNSINDD  111 (309)
Q Consensus        40 ~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~e----rd~---id~ei~~~i~~~~~~I~~L~~~~~~~  111 (309)
                      ....++.|+..+.+|...|..+...+.+|...+-.. ..+.+++    +.+   +..+++..++.|...|+.|+...+..
T Consensus        39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~  118 (279)
T 2xhe_B           39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA  118 (279)
T ss_dssp             -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345578999999999999999999999997776543 2244544    444   44688888999999999999877643


Q ss_pred             hhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCC
Q 021700          112 EANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSD  191 (309)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  191 (309)
                      ... ++|   ..+ .+.+..+|+.+++..|..+|++++..|+++|..|.++.+.+..+   +....+..+.+    ...+
T Consensus       119 ~~~-~~~---~~~-~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R---~~~i~~~~~~~----ee~~  186 (279)
T 2xhe_B          119 QQE-GTF---EDG-TVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR---QCRVVEPSLSD----DAIQ  186 (279)
T ss_dssp             HHH-HCC---STT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---SCCSSCCCCSS----TTHH
T ss_pred             hhc-ccc---cCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCCCH----HHHH
Confidence            221 111   111 12224589999999999999999999999999999987765431   22222111000    0000


Q ss_pred             -ccccccCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021700          192 -IRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNV  270 (309)
Q Consensus       192 -~~~~~~~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v  270 (309)
                       ......  +. ...|.  ..+.....+.++++|+++|++||++|.||++||.+|+.||.+||++||+|++|++.|..||
T Consensus       187 ~~~e~g~--~~-~f~q~--~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v  261 (279)
T 2xhe_B          187 KVIEHGT--EG-IFSGM--RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYV  261 (279)
T ss_dssp             HHHHHC----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC
T ss_pred             HHHhCCc--hH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             000000  00 01111  1112223357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhh
Q 021700          271 ELGNKELSQAIRRNTSSR  288 (309)
Q Consensus       271 ~~g~~~L~ka~~~~~~~r  288 (309)
                      +.|+.+|.||.+|++++|
T Consensus       262 ~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          262 KKATEQVVQARHYQESAR  279 (279)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHhHccC
Confidence            999999999999999986
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.45
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 98.55
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 93.54
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6e-14  Score=117.31  Aligned_cols=190  Identities=11%  Similarity=0.106  Sum_probs=119.8

Q ss_pred             CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCC
Q 021700           44 RSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRK  122 (309)
Q Consensus        44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~  122 (309)
                      ..+|+..+.+|...|..+...+..|...+-.. ..++.++.+++...+..+...+....+.++..+......        
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--------   75 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence            35899999999999999999999997655433 234555666666666666666666666666555433221        


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCccccccCCCCc
Q 021700          123 GDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEP  202 (309)
Q Consensus       123 ~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (309)
                           .....++.+++..|..+|.+++..|+.++..|.+..+.+..++.++.. +...+.+ ......+......    .
T Consensus        76 -----~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~----~  144 (196)
T d1fioa_          76 -----GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQ-PEATEDE-VEAAISDVGGQQI----F  144 (196)
T ss_dssp             -----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCCHHH-HHHHTSHHHHHHH----H
T ss_pred             -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCccchh-hhHhhccccchHH----H
Confidence                 112367788899999999999999999999998887665432111111 1000000 0000000000000    0


Q ss_pred             chHHHH-HHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 021700          203 LTVQQQ-LLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQ  252 (309)
Q Consensus       203 ~~~q~q-~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q  252 (309)
                      .+.+.. ....+....+.++++|+++|.+||++|.||++||.+|++||.+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         145 SQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            000000 01112233568899999999999999999999999999999988
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure