Citrus Sinensis ID: 021745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
ccccccccccHHHHHHccccccEEcEEccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEcccccHHccccccccccEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEcccEEEcccEEEEEEEEEcccccccccEEEEEEEccEEEEcc
cccccccccHHHHHHHHHHccccccccccccccHHcccEcccccccEEcccEEEHEHHHHHHEEEcccccEEEEHEEEEEEEEEEEccccccEcccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEccccEEEEEc
mdfgfpqftEAKILSEFIKTdayrmevtqrppmavTNAVSWrsegirykkneVFLDVVESVNILVnsngqivrSDVVGALKMRTylsgmpecklglndrVLLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQfkerstatnveielpvpadatnpnvrtsmgsaryapenDALVWKIksfpgnkeyMLRAefslpsitaeeaaperkapirvkfeipyftvsGIQVRYLKIIEKsgyqalpwVRYITMAGEYELRLM
MDFGFPQFTEAKILSEFIKTDayrmevtqrppmavtnavswrsegiRYKKNEVFLDVVESVNilvnsngqivrsdvVGALKMRTYLSGMPECKLGLNDRVLLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKArsqfkerstatnveielpvpadatnpnVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLpsitaeeaaperkapirvkfeipyftvsgIQVRYLKIIEksgyqalpwvrYITMAGEYELRLM
MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
******QFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMV******************************************NDALVWKIKSFPGNKEYMLRAEFSLPSI**********APIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE****
MDFGFPQFTEAKILSEFI***************************IRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDR***************DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR******************APIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
*DFGFPQFTEAKILSEFIKTDA*****TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
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MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
P35602422 AP-1 complex subunit mu-1 yes no 0.987 0.720 0.661 1e-126
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.983 0.716 0.667 1e-126
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.983 0.716 0.667 1e-126
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.983 0.716 0.667 1e-125
P35585423 AP-1 complex subunit mu-1 yes no 0.983 0.716 0.664 1e-125
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.983 0.716 0.661 1e-123
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.983 0.716 0.661 1e-123
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.983 0.716 0.661 1e-123
Q54HS9428 AP-1 complex subunit mu O yes no 0.987 0.710 0.621 1e-116
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.993 0.718 0.590 1e-111
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function desciption
 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 203/307 (66%), Positives = 256/307 (83%), Gaps = 3/307 (0%)

Query: 1   MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 60
           MDFGFPQ TE++IL E+I  +  ++    RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+ES
Sbjct: 118 MDFGFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIES 177

Query: 61  VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIK 120
           VN+L ++NG +++S++VG++KMR YL+GMPE +LGLND+VL E  GR  K K+++L+D+K
Sbjct: 178 VNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRG-KSKSVELEDVK 236

Query: 121 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKA 180
           FHQCVRL+RF+ DRTISFIPPDG+F+LM+YRL+T VKPLIW+E  IERHS SR+  ++KA
Sbjct: 237 FHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKA 296

Query: 181 RSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR 240
           +SQFK RSTA NVEI +PVP+DA +P  +TS+GS +Y PE  A VW IK+FPG KEY+L 
Sbjct: 297 KSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLT 356

Query: 241 AEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 300
           A  SLPS+ +EE+  E + PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  
Sbjct: 357 AHLSLPSVMSEES--EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQN 414

Query: 301 GEYELRL 307
           GEYE+R+
Sbjct: 415 GEYEMRM 421
Required for many aspects of development and behavior, including negative regulation of vulval differentiation.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
255540561 428 clathrin coat assembly protein ap-1, put 1.0 0.719 0.961 1e-176
225470599 428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 0.719 0.961 1e-176
343172625 428 AP-1 complex subunit mu, partial [Silene 1.0 0.719 0.954 1e-174
413951036 632 hypothetical protein ZEAMMB73_283352 [Ze 1.0 0.487 0.948 1e-174
226500810 429 hypothetical protein [Zea mays] gi|19470 1.0 0.717 0.948 1e-173
242054145 429 hypothetical protein SORBIDRAFT_03g03229 1.0 0.717 0.944 1e-173
115439443 429 Os01g0703600 [Oryza sativa Japonica Grou 1.0 0.717 0.941 1e-173
297843902 428 clathrin adaptor complexes medium subuni 1.0 0.719 0.938 1e-173
125527406 429 hypothetical protein OsI_03424 [Oryza sa 1.0 0.717 0.938 1e-172
449478746 428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 0.719 0.941 1e-172
>gi|255540561|ref|XP_002511345.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223550460|gb|EEF51947.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/308 (96%), Positives = 304/308 (98%)

Query: 1   MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 60
           MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES
Sbjct: 121 MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180

Query: 61  VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIK 120
           VNILVNSNGQI+RSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR+TKGKAIDLDDIK
Sbjct: 181 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDIK 240

Query: 121 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKA 180
           FHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPLIWVEAQ+ERHSRSRIE MVKA
Sbjct: 241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQVERHSRSRIEFMVKA 300

Query: 181 RSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR 240
           RSQFKERSTATNVEIELPVP+DATNPN+R+SMGSA YAPENDALVWKIKSFPGNKEYMLR
Sbjct: 301 RSQFKERSTATNVEIELPVPSDATNPNIRSSMGSATYAPENDALVWKIKSFPGNKEYMLR 360

Query: 241 AEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 300
           AEF LPSITAEEA PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct: 361 AEFKLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query: 301 GEYELRLM 308
           GEYELRL+
Sbjct: 421 GEYELRLI 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|343172625|gb|AEL99016.1| AP-1 complex subunit mu, partial [Silene latifolia] gi|343172627|gb|AEL99017.1| AP-1 complex subunit mu, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|413951036|gb|AFW83685.1| hypothetical protein ZEAMMB73_283352 [Zea mays] Back     alignment and taxonomy information
>gi|226500810|ref|NP_001140632.1| hypothetical protein [Zea mays] gi|194700258|gb|ACF84213.1| unknown [Zea mays] gi|223949625|gb|ACN28896.1| unknown [Zea mays] gi|238009702|gb|ACR35886.1| unknown [Zea mays] gi|413951037|gb|AFW83686.1| hypothetical protein ZEAMMB73_283352 [Zea mays] Back     alignment and taxonomy information
>gi|242054145|ref|XP_002456218.1| hypothetical protein SORBIDRAFT_03g032290 [Sorghum bicolor] gi|224030047|gb|ACN34099.1| unknown [Zea mays] gi|241928193|gb|EES01338.1| hypothetical protein SORBIDRAFT_03g032290 [Sorghum bicolor] gi|414880829|tpg|DAA57960.1| TPA: hypothetical protein ZEAMMB73_448798 [Zea mays] Back     alignment and taxonomy information
>gi|115439443|ref|NP_001044001.1| Os01g0703600 [Oryza sativa Japonica Group] gi|113533532|dbj|BAF05915.1| Os01g0703600 [Oryza sativa Japonica Group] gi|125571729|gb|EAZ13244.1| hypothetical protein OsJ_03168 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|125527406|gb|EAY75520.1| hypothetical protein OsI_03424 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|449478746|ref|XP_004155408.1| PREDICTED: AP-1 complex subunit mu-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 0.719 0.922 1.5e-152
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 0.719 0.879 2.8e-144
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.987 0.713 0.673 2.7e-116
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.983 0.716 0.667 7.3e-114
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.983 0.716 0.667 7.3e-114
UNIPROTKB|B4DDG7351 AP1M1 "AP-1 complex subunit mu 0.983 0.863 0.667 7.3e-114
UNIPROTKB|K7EJL1351 AP1M1 "AP-1 complex subunit mu 0.983 0.863 0.667 7.3e-114
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.983 0.716 0.667 7.3e-114
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.983 0.716 0.667 7.3e-114
RGD|1307653423 Ap1m1 "adaptor-related protein 0.983 0.716 0.667 1.2e-113
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 284/308 (92%), Positives = 301/308 (97%)

Query:     1 MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 60
             MDFG+PQ+TEA+ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGI+YKKNEVFLDV+E+
Sbjct:   121 MDFGYPQYTEARILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIEN 180

Query:    61 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIK 120
             VNILVNSNGQIVRSDVVGALKMRTYL+GMPECKLGLNDRVLLEAQGR+TKGKAIDL+DIK
Sbjct:   181 VNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIK 240

Query:   121 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKA 180
             FHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPLIWVEAQIE HSRSR+E+++KA
Sbjct:   241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIKA 300

Query:   181 RSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR 240
             RSQFKERSTATNVEIELPVP DA+NP VRTS+GSA YAPE DALVWKIKSFPGNKEYMLR
Sbjct:   301 RSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLR 360

Query:   241 AEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 300
             AEF LPSITAEEA PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct:   361 AEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query:   301 GEYELRLM 308
             GEYELRL+
Sbjct:   421 GEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DDG7 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EJL1 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.66440.98370.7163yesno
Q54HS9AP1M_DICDINo assigned EC number0.62170.98700.7102yesno
P35602AP1M_CAEELNo assigned EC number0.66120.98700.7203yesno
Q32Q06AP1M1_RATNo assigned EC number0.66770.98370.7163yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.66770.98370.7163yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.66770.98370.7163yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.59090.99350.7183yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-165
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-149
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-121
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 1e-97
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 1e-85
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 7e-81
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 8e-63
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 6e-37
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 1e-35
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 6e-33
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 7e-19
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 1e-18
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 6e-10
pfam10291251 pfam10291, muHD, Muniscin C-terminal mu homology d 8e-04
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  521 bits (1345), Expect = 0.0
 Identities = 203/268 (75%), Positives = 238/268 (88%), Gaps = 1/268 (0%)

Query: 36  TNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLG 95
           TNAVSWR EGI+YKKNEVFLDV+ESVN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 96  LNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQ 155
           LND+VL EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLSTQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 156 VKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSA 215
           VKPLIWVE  +ERHSRSR+EIMVKA++QFK RSTA NVEI +PVP DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 216 RYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEA-APERKAPIRVKFEIPYFTVSG 274
            YAPE DAL+WKIKSFPG KE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 275 IQVRYLKIIEKSGYQALPWVRYITMAGE 302
           +QVRYLKIIEKSGYQALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 99.94
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.22
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-81  Score=553.24  Aligned_cols=304  Identities=44%  Similarity=0.786  Sum_probs=277.7

Q ss_pred             CCcccccccChhhHhhcccCcccccccc----c-----CC----CCccccccccccCCCcceeceEEEEEEEeEEEEEcc
Q 021745            1 MDFGFPQFTEAKILSEFIKTDAYRMEVT----Q-----RP----PMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNS   67 (308)
Q Consensus         1 ~D~G~p~~t~~~~L~~~i~~~~~~~~~~----~-----~~----~~~~~~~~~wR~~~~~~~~nEI~vdV~E~l~~~~~~   67 (308)
                      |||||||+||+++|+.+|..+++..+-+    +     ..    .+..++.++||+.|++|++||+|+||+|++|.++++
T Consensus       115 ld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~  194 (446)
T KOG0938|consen  115 LDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSS  194 (446)
T ss_pred             HhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEcC
Confidence            6999999999999999999998877622    1     11    134466799999999999999999999999999999


Q ss_pred             CCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccCC-------------CCCceeeecccccceeeccccccCCc
Q 021745           68 NGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------------TKGKAIDLDDIKFHQCVRLARFENDR  134 (308)
Q Consensus        68 ~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~~-------------~~~~~~~l~d~~fH~cV~~~~f~~~~  134 (308)
                      +|++++++|.|.|.|+++|||||+|+++|||...++..+..             .+...+.|+||.||+||++++|++++
T Consensus       195 ~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh  274 (446)
T KOG0938|consen  195 DGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEH  274 (446)
T ss_pred             CCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccc
Confidence            99999999999999999999999999999999877632110             24456889999999999999999999


Q ss_pred             eEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEecCCCCCCcceEEeccee
Q 021745          135 TISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGS  214 (308)
Q Consensus       135 ~l~F~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~  214 (308)
                      .|+|+||||+|+||+||+..+...||.|.|.+++.+.+++||++++++.|+.++-+.+|.++||+|.++..+.+.++.|.
T Consensus       275 ~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gk  354 (446)
T KOG0938|consen  275 IISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGK  354 (446)
T ss_pred             eEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCc
Confidence            99999999999999999999998888999999988878999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEeceeCCCceEEEEEEEEecCCC-ccccCCCCCCceEEEEEECcccccccEEEEEEEEE-cCCCCccc
Q 021745          215 ARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSIT-AEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALP  292 (308)
Q Consensus       215 ~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~-~~~~~~~k  292 (308)
                      |+|.+++++++|+|+++.|.+|.+|++++++.+.. +...|  ..+||+++|++||++.|||.|++++|.+ +++|+..|
T Consensus       355 aky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W--trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vk  432 (446)
T KOG0938|consen  355 AKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW--TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVK  432 (446)
T ss_pred             cccCcccceEEEEecccCCcccceeEEEEEeccCccccccc--cCCCceeEEeeeeecCCceEEEEEEEecccCCCceEE
Confidence            99999999999999999999999999999997654 45566  7899999999999999999999999998 58899999


Q ss_pred             ceEEEEEeceEEEE
Q 021745          293 WVRYITMAGEYELR  306 (308)
Q Consensus       293 ~vrY~t~sg~Y~~R  306 (308)
                      ||||+|+||+||+|
T Consensus       433 WVrYitkaGsyEiR  446 (446)
T KOG0938|consen  433 WVRYITKAGSYEIR  446 (446)
T ss_pred             EEEEecccceeeeC
Confidence            99999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-126
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-113
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-109
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-65
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 2e-64
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-62
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 2e-62
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-61
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-61
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-59
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 7e-56
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 3e-32
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 3e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  449 bits (1154), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 257/307 (83%), Gaps = 4/307 (1%)
Query: 1   MDFGFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVE 59
           MDFG+PQ T++KIL EFI  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E
Sbjct: 118 MDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIE 177
Query: 60  SVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDI 119
           +VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K K+++L+D+
Sbjct: 178 AVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDV 236
Query: 120 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVK 179
           KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPLIW+E+ IE+HS SRIE MVK
Sbjct: 237 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVK 296
Query: 180 ARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYML 239
           A+SQFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW +KSFPG KEY++
Sbjct: 297 AKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLM 356
Query: 240 RAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 299
           RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQA+PWVRYIT 
Sbjct: 357 RAHFGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQ 414
Query: 300 AGEYELR 306
            G+Y+LR
Sbjct: 415 NGDYQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-104
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 1e-101
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 2e-99
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 8e-98
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-94
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 2e-94
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
 Score =  306 bits (784), Expect = e-104
 Identities = 121/316 (38%), Positives = 184/316 (58%), Gaps = 19/316 (6%)

Query: 7   QFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESV 61
           Q +E   L  FI     + +        +    VT  + WR EGI+Y++NE+FLDV+ESV
Sbjct: 1   QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60

Query: 62  NILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST-------KGKAI 114
           N+L++  GQ++ + V G + M++YLSGMPECK G+ND++++E QG+ T         ++I
Sbjct: 61  NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 120

Query: 115 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRI 174
            +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR +  +     V   +    R+++
Sbjct: 121 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 180

Query: 175 EIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGN 234
           E+ V  +S FK    A  +E+ +P P + +   V    G A+Y    +A+VWKIK   G 
Sbjct: 181 EVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240

Query: 235 KEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQA 290
           KE  + AE  L     ++     + PI + FE+P F  SG++VRYLK+ E     S +  
Sbjct: 241 KESQISAEIELLPTNDKK--KWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDV 297

Query: 291 LPWVRYITMAGEYELR 306
           + WVRYI  +G YE R
Sbjct: 298 IKWVRYIGRSGIYETR 313
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.17
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
Probab=100.00  E-value=5.2e-79  Score=563.78  Aligned_cols=298  Identities=40%  Similarity=0.768  Sum_probs=236.8

Q ss_pred             cccChhhHhhcccCccccccc-----ccCCCCccccccccccCCCcceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEE
Q 021745            7 QFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALK   81 (308)
Q Consensus         7 ~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~i~   81 (308)
                      |+||+++||++|.++++..+.     ...+|++++++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus         1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~   80 (314)
T 1i31_A            1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV   80 (314)
T ss_dssp             -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred             CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence            789999999999999987642     235567888999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeccchhhhhccCC-------CCCceeeecccccceeeccccccCCceEEEeCCCCcEEEEEEEecC
Q 021745           82 MRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLST  154 (308)
Q Consensus        82 ~~s~LsG~P~v~l~Ln~~~~~~~~~~~-------~~~~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~  154 (308)
                      |+|+|+|||+|+|+||+...+++.+..       ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus        81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~  160 (314)
T 1i31_A           81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK  160 (314)
T ss_dssp             EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred             EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence            999999999999999998766543211       0134678999999999999999999999999999999999999998


Q ss_pred             CCcCcEEEEEEEEECcccEEEEEEEecccCCCcceeeeEEEEecCCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCC
Q 021745          155 QVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGN  234 (308)
Q Consensus       155 ~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~  234 (308)
                      +..+||.+.|+++..+++++||+++++++|+.+..++||.|+||+|+++..+.+.++.|+++|++++++|+|+|++++|+
T Consensus       161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~  240 (314)
T 1i31_A          161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM  240 (314)
T ss_dssp             SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred             CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence            88889999999998666799999999999998889999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCccccCCCCCCceEEEEEECcccccccEEEEEEEEEc----CCCCcccceEEEEEeceEEEEe
Q 021745          235 KEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL  307 (308)
Q Consensus       235 ~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  307 (308)
                      ++++++|+++|++......  ..++||+|+|++| +++|||+|++|+|.++    ++|+|+|||||+|+||+|++|+
T Consensus       241 ~e~~l~~~~~l~s~~~~~~--~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~  314 (314)
T 1i31_A          241 KESQISAEIELLPTNDKKK--WARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  314 (314)
T ss_dssp             EEEEEEEEEEECCCCSSSC--CCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred             CcEEEEEEEEecCCCcCCc--cCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence            9999999999987532223  2699999999999 9999999999999985    5799999999999999999996
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-105
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  306 bits (785), Expect = e-105
 Identities = 113/279 (40%), Positives = 173/279 (62%), Gaps = 14/279 (5%)

Query: 39  VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLND 98
           + WR EGI+Y++NE+FLDV+ESVN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 99  RVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 151
           ++++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 152 LSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTS 211
            +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 212 MGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT 271
            G A+Y    +A+VWKIK   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 272 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 306
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.3e-71  Score=499.26  Aligned_cols=266  Identities=42%  Similarity=0.830  Sum_probs=234.2

Q ss_pred             cccccCCCcceeceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhccC-------CCCC
Q 021745           39 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR-------STKG  111 (308)
Q Consensus        39 ~~wR~~~~~~~~nEI~vdV~E~l~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~v~l~Ln~~~~~~~~~~-------~~~~  111 (308)
                      ||||+.|++|++|||||||+|+|+++++++|.++.++|+|+|.|+|+|+|+|+|+|+||++..++....       ....
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999876654321       1245


Q ss_pred             ceeeecccccceeeccccccCCceEEEeCCCCcEEEEEEEecCCCcCcEEEEEEEEECcccEEEEEEEecccCCCcceee
Q 021745          112 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTAT  191 (308)
Q Consensus       112 ~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~pp~~v~~~~~~~~~~~ve~~l~~~~~~~~~~~~~  191 (308)
                      .++.|+||+||+|||++.|+++|.|+|+||||+|+||+||+..+..+|+.+.+++...+++++|++++++++++.+..++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            67889999999999999999999999999999999999999888888889999998877779999999999999888999


Q ss_pred             eEEEEecCCCCCCcceEEecceeEEEeCCCCEEEEEeceeCCCceEEEEEEEEecCCCccccCCCCCCceEEEEEECccc
Q 021745          192 NVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT  271 (308)
Q Consensus       192 ~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~pi~v~F~ip~~s  271 (308)
                      +|.|+||+|..+..+++.++.|+++|+.+++.++|+|++++++++++|++++++.+..+...  ..++||+|+|+|| ++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~--~~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKK--WARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSC--CCCCCEEEEEEES-SC
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCcc--ccCCcEEEEEEec-cc
Confidence            99999999999999999999999999999999999999999999999999999977655443  3689999999999 89


Q ss_pred             ccccEEEEEEEEEc----CCCCcccceEEEEEeceEEEEe
Q 021745          272 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL  307 (308)
Q Consensus       272 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  307 (308)
                      +|||+|++|+|.+.    ++|+|+|||||+|+||+|+||.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999999873    4589999999999999999994