Citrus Sinensis ID: 021758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEEEEcccEEEEEEcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEcccEEEEEcccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHHHHHccccccccccEEEEEcccccEEEEcccccccccccccEEEEEEEEEcHEEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEccccEEEEEcccHHHcccHHHHHHEHcccc
Coil and Loop (DISEMBL)
MAYYRRAKAALDAFRNlsskavpkspvqescsrvysngsansakfssgfysySCISQrlrnsycnpnfntakryyyvdryhvqhfrprgprkwlqnprTVFIVVVIGSGAFITLYLgnletvpytkrTHFVLLSKAVERQLGESQFQQMKAAFKgkilpaihpdsVRVRLIAKDIIEALQRGLkhetvwsdmgyastetdfvnegRAARDTLRALSensergktegkwhqedeilddkWVQQSRKKGQEKGLQSAtshldglnweVLVVNEpvinafclpggkivVFTGLLEHFRTDAEIATIIGHEV
Flexible Loop (DISEMBL)
MAYYRRAKAAldafrnlsskavpkspvqesCSRVYSNgsansakfsSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFrprgprkwlqnpRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRglkhetvwsdmgyastetdfvnegRAARDTLRalsensergktegkwhqedeilddKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Low Complexity Region (SEG)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Disordered region (IsUnstruct)
********************************************FSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*******************************************************HLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIG***
Disordered Region (DISOPRED)
**Y***AKAALD******************************************************NFNTAKRYYYVDRYHVQ****RGP*KWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVN*********************************DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Disordered Region (DISEMBL)
MAYYRRAKAALDAFRNLSS***************YSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRAL**************QEDEILDDKWVQ**************TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Disordered Region (DISPRO)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD***EGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
P36163	345	Mitochondrial metalloendo	yes	no	0.165	0.147	0.490	1e-07
Q9P7G4	337	Mitochondrial metalloendo	yes	no	0.149	0.136	0.407	1e-06
Q96E52	524	Metalloendopeptidase OMA1	yes	no	0.110	0.064	0.4	6e-06
Q9D8H7	521	Metalloendopeptidase OMA1	yes	no	0.097	0.057	0.434	1e-05
D3ZS74	504	Metalloendopeptidase OMA1	yes	no	0.152	0.093	0.446	1e-05
Q3SZN3	523	Metalloendopeptidase OMA1	yes	no	0.100	0.059	0.446	1e-05
E9QBI7	478	Metalloendopeptidase OMA1	yes	no	0.168	0.108	0.403	2e-05

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct: 152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE 
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHET 197

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           +  +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE+
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEI 329

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE+
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHEI 325

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE+
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEI 308

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           +NW + VV+ P INAF LP G++ VFTGLL       +++ ++GHE+
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHEI 329

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           + +  + W V VV+ P +NAF LP G+I VFTG+L       ++  I+GHE+
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHEM 298

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255539649	482	peptidase, putative [Ricinus communis] g	0.987	0.630	0.650	1e-119
449460776	440	PREDICTED: uncharacterized protein LOC10	0.987	0.690	0.664	1e-113
449499671	440	PREDICTED: uncharacterized LOC101206881	0.987	0.690	0.664	1e-113
356530935	448	PREDICTED: uncharacterized protein LOC10	0.987	0.678	0.637	1e-110
225455604	434	PREDICTED: mitochondrial metalloendopept	0.964	0.684	0.646	1e-108
224122540	382	predicted protein [Populus trichocarpa]	0.756	0.609	0.768	1e-106
10177873	485	unnamed protein product [Arabidopsis tha	0.977	0.620	0.553	1e-96
297792483	436	peptidase M48 family protein [Arabidopsi	0.987	0.697	0.550	1e-96
30696099	442	Peptidase family M48 family protein [Ara	0.977	0.680	0.553	2e-96
356517492	445	PREDICTED: uncharacterized protein LOC10	0.977	0.676	0.563	2e-92

>gi|255539649|ref|XP_002510889.1| peptidase, putative [Ricinus communis] gi|223550004|gb|EEF51491.1| peptidase, putative [Ricinus communis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 262/323 (81%), Gaps = 19/323 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPV-QESCSRVYSNGSANSA-----KFSSGFYSYSC 54
           M  +++AK A+D FRN +SK   ++P+ QES SR+Y NGS++ +     KFS GFY YS 
Sbjct: 32  MERFKKAKLAIDTFRNYASKINHRAPLHQESISRIYQNGSSSVSSSNQSKFS-GFYPYSS 90

Query: 55  ISQRL--------RNSYCNPNF-NTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVV 105
           +SQRL        +  + NP   ++ KR+YYVDRY V HF+PRGPR+W QNPR+V IV +
Sbjct: 91  VSQRLGLGFQMGTKKIHSNPFLGSSGKRFYYVDRYQVHHFKPRGPRRWFQNPRSVLIVFL 150

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
           +GSG FIT+Y GNLETVPYTKR HFVLL+K++E+++GE+QF+QMKAAFKGK+LPAIHP+S
Sbjct: 151 VGSGVFITVYFGNLETVPYTKRKHFVLLAKSMEKKIGENQFEQMKAAFKGKMLPAIHPES 210

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
           VRVRLIAKDIIEALQRGL+ ETVWSDMGYAS+E D  +E    R+TLRAL+EN E  K E
Sbjct: 211 VRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEA-TGRETLRALTENEE--KVE 267

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIV 285
            KW++EDE+LDD W+Q SRKKGQE+G ++ TSHL+GLNWEVLVVN+PV+NA CLPGGKI+
Sbjct: 268 TKWYKEDEVLDDNWIQHSRKKGQERGSRAETSHLEGLNWEVLVVNDPVVNALCLPGGKII 327

Query: 286 VFTGLLEHFRTDAEIATIIGHEV 308
           VFTGLL+HF+TDAEIATIIGHEV
Sbjct: 328 VFTGLLDHFKTDAEIATIIGHEV 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460776|ref|XP_004148121.1| PREDICTED: uncharacterized protein LOC101206881 [Cucumis sativus]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/313 (66%), Positives = 243/313 (77%), Gaps = 9/313 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGKTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEV 308
           +DAEIATIIGHEV
Sbjct: 297 SDAEIATIIGHEV 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499671|ref|XP_004160882.1| PREDICTED: uncharacterized LOC101206881 [Cucumis sativus]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/313 (66%), Positives = 243/313 (77%), Gaps = 9/313 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGRTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEV 308
           +DAEIATIIGHEV
Sbjct: 297 SDAEIATIIGHEV 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530935|ref|XP_003534034.1| PREDICTED: uncharacterized protein LOC100799127 [Glycine max]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/320 (63%), Positives = 249/320 (77%), Gaps = 16/320 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS-AKFSS--GFYSYSCISQ 57
           M +YRR K ALD FR L+S+  P++P+ +  +R+ S+G  +S +K +S  GF S+   SQ
Sbjct: 1   MGWYRRGKLALDHFRRLASRVTPQNPIFQRGARICSSGYLDSGSKVASFNGFSSFCSTSQ 60

Query: 58  RLRNSYC---NPNFNT-----AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL        N NF+      AKR+YYVD  +V+HF+PRGP  W +NPR VFIVV++GSG
Sbjct: 61  RLGTRGVVGVNRNFHNSVLFGAKRFYYVDPRNVRHFKPRGPWHWFENPRHVFIVVMVGSG 120

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT+Y GN+ETVPYTKRTH +LLSKA+ER+LGES+F+Q+K  FKGKILP IHP+SVRV 
Sbjct: 121 VLITVYFGNIETVPYTKRTHLILLSKAMERKLGESEFEQIKTGFKGKILPPIHPESVRVT 180

Query: 170 LIAKDIIEALQRGL-KHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKW 228
           +IAKDII+ALQRGL K E VWSD+GYAS     V EG   R+TL AL+ + E  K EG W
Sbjct: 181 MIAKDIIDALQRGLRKEEQVWSDLGYASEHAMLV-EG-DGRETLNALAGSEE--KIEGNW 236

Query: 229 HQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFT 288
            +EDEILDDKW+QQSRKKGQE+G Q+ATSHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFT
Sbjct: 237 AKEDEILDDKWIQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVVNAFCLPGGKIVVFT 296

Query: 289 GLLEHFRTDAEIATIIGHEV 308
           GLLEHF++DAEIATIIGHEV
Sbjct: 297 GLLEHFKSDAEIATIIGHEV 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455604|ref|XP_002269952.1| PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/314 (64%), Positives = 248/314 (78%), Gaps = 17/314 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSA----NSAKFSSGFYSYSCIS 56
           M++YRRAK+A +A R+    A+P++P+QE  SR+  N S+    N+++ S GF  +S IS
Sbjct: 1   MSFYRRAKSAFNALRS----AIPRTPIQEPTSRITHNPSSIYSSNNSRVS-GFSPFSLIS 55

Query: 57  QR--LRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITL 114
            +  L+  Y NP    A+RYYYVDRY VQHFRPRGPR+W QNPRTVFIVVV+GSG  IT+
Sbjct: 56  CQIGLKRCYPNPFLGGARRYYYVDRYRVQHFRPRGPRRWFQNPRTVFIVVVVGSGVLITV 115

Query: 115 YLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKD 174
           Y GNLE +PYT RTHFVLLS+++ER++GE+QF+Q+K  FKGKILPAIHPDSVRVRLI+ D
Sbjct: 116 YFGNLEAIPYTNRTHFVLLSRSMERRIGEAQFEQLKGTFKGKILPAIHPDSVRVRLISND 175

Query: 175 IIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234
           II+ALQRGL HE VWSD GYA+ E DF+ +    R+TL AL +        GKWH++DEI
Sbjct: 176 IIKALQRGLSHERVWSDPGYAA-EGDFMVDEARTRETLAALMDTP-----PGKWHKDDEI 229

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF 294
           LDDKWV QSRK+ QE+G +  T HL+GLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHF
Sbjct: 230 LDDKWVHQSRKEAQERGSRPTTQHLEGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHF 289

Query: 295 RTDAEIATIIGHEV 308
           RTDAEIATIIGHE+
Sbjct: 290 RTDAEIATIIGHEI 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122540|ref|XP_002318862.1| predicted protein [Populus trichocarpa] gi|222859535|gb|EEE97082.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/238 (76%), Positives = 213/238 (89%), Gaps = 5/238 (2%)

Query: 71  AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHF 130
           AKR+YYVDRY VQHF+PRGP++W +NPRTV IVV++GSGAFIT+Y GNLETVPYTKR HF
Sbjct: 18  AKRFYYVDRYRVQHFKPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHF 77

Query: 131 VLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWS 190
           VLLSK +ER++GE+QF+QMKAAFKGK+LPA+HP+SVR+RLIA+DII+ALQRGLK E VWS
Sbjct: 78  VLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKREQVWS 137

Query: 191 DMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEK 250
           DMGYAS E+D  +E  +A +TL+ALSE  E  K EGKW++EDEILDD WVQQ RKK  EK
Sbjct: 138 DMGYASQESDMAHEA-SAHETLKALSEREE--KIEGKWYKEDEILDDNWVQQCRKK--EK 192

Query: 251 GLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           GL++  SHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV
Sbjct: 193 GLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177873|dbj|BAB11243.1| unnamed protein product [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/318 (55%), Positives = 236/318 (74%), Gaps = 17/318 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 44  MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 100

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 101 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 160

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 161 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 220

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 221 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 278

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 279 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 336

Query: 291 LEHFRTDAEIATIIGHEV 308
           L HF++DAE+AT+IGHEV
Sbjct: 337 LNHFKSDAEVATVIGHEV 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792483|ref|XP_002864126.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309961|gb|EFH40385.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/309 (55%), Positives = 232/309 (75%), Gaps = 5/309 (1%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRL 59
           M++YRR K   D+ R N++ K +P+S +    + + S+G ++ +    G  S++ + Q  
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHLPSRINPIGSSGFSSISSRQVGLRSWTSLGQNT 60

Query: 60  RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNL 119
                NP  +  KR YYVDRY V+HF+PRGP +W QNPRTVF VV++GS A ITLY+GNL
Sbjct: 61  NRIAYNPFLSVPKRNYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVIVGSVALITLYVGNL 120

Query: 120 ETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEAL 179
           ETVPYTKRTHF+LLSK +E+ LGE+QF+Q+K  +KGKILPAIHP+S+RVRLIAK++I+AL
Sbjct: 121 ETVPYTKRTHFILLSKPMEKLLGETQFEQIKKTYKGKILPAIHPESIRVRLIAKEVIDAL 180

Query: 180 QRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKW 239
           QRGL +E VWSD+GYASTE+      +  ++   A+S   E   T+ KW + D++LDD+W
Sbjct: 181 QRGLSNERVWSDLGYASTESSLGGGDKGVKEIEMAMS--GEDTMTDMKWSKADQVLDDEW 238

Query: 240 VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAE 299
           +QQSRKK  +    +A+SHL+G++WEVLVVNEP++NAFCLP GKIVVFTGLL+ F++DAE
Sbjct: 239 IQQSRKKDSKA--HAASSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGLLDIFKSDAE 296

Query: 300 IATIIGHEV 308
           +AT+IGHEV
Sbjct: 297 VATVIGHEV 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696099|ref|NP_199987.2| Peptidase family M48 family protein [Arabidopsis thaliana] gi|26451602|dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] gi|332008738|gb|AED96121.1| Peptidase family M48 family protein [Arabidopsis thaliana]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 176/318 (55%), Positives = 236/318 (74%), Gaps = 17/318 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 57

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 58  WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query: 291 LEHFRTDAEIATIIGHEV 308
           L HF++DAE+AT+IGHEV
Sbjct: 294 LNHFKSDAEVATVIGHEV 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517492|ref|XP_003527421.1| PREDICTED: uncharacterized protein LOC100800848 [Glycine max]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/321 (56%), Positives = 231/321 (71%), Gaps = 20/321 (6%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS----AKFSSGFYSYSC-I 55
           M +YRR K ALD F +L+S+ VP++P+ +  SR++ +G  +S    A+FS    S  C I
Sbjct: 1   MGWYRRGKLALDRFHSLASRVVPQNPIFQHSSRIWQSGYLDSGSKGARFSG--LSLCCSI 58

Query: 56  SQRL--------RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIG 107
           SQRL          ++ NP    A R+YYVD  +V+HF+PRGPR W QN R +F+ V++G
Sbjct: 59  SQRLGAQGVVGVNGNFHNPFLLGANRFYYVDPCNVRHFKPRGPRHWFQNSRHIFVAVMVG 118

Query: 108 SGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVR 167
               IT++ GNLETVPYTKRTH +LLSKA+ER+LGESQF+Q+KA F+GKILP IHP+SVR
Sbjct: 119 W-VLITVFFGNLETVPYTKRTHLILLSKAMERRLGESQFEQIKADFEGKILPPIHPESVR 177

Query: 168 VRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGK 227
           V +IA +II+AL R L  E  W+D GYAS E     EG   R+TL AL  + E  K EG 
Sbjct: 178 VTMIANEIIDALLRRLMKEQGWNDFGYAS-EHAMPVEGDG-RETLSALVGSEE--KVEGS 233

Query: 228 WHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVF 287
            H+E++ILD KWV+ SRK GQE+G   ATSHL GL+WE+LVVN+P +NAFCLPGGKIVVF
Sbjct: 234 CHKENKILDGKWVRLSRKNGQERGSLIATSHLVGLDWEILVVNKPDLNAFCLPGGKIVVF 293

Query: 288 TGLLEHFRTDAEIATIIGHEV 308
           TGL +HF++DAEIATIIGHEV
Sbjct: 294 TGLFDHFKSDAEIATIIGHEV 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2165356	442	AT5G51740 [Arabidopsis thalian	0.977	0.680	0.553	2.5e-90
ASPGD|ASPL0000044232	376	AN1850 [Emericella nidulans (t	0.162	0.132	0.431	3.2e-13
POMBASE|SPAP14E8.04	337	oma1 "metallopeptidase Oma1 (p	0.172	0.157	0.415	6e-12
SGD|S000001795	345	OMA1 "Metalloendopeptidase of	0.165	0.147	0.490	1.8e-11
CGD|CAL0001997	336	orf19.3827 [Candida albicans (	0.168	0.154	0.333	1.2e-09
RGD|1304821	504	Oma1 "zinc metallopeptidase ho	0.152	0.093	0.446	3.8e-08
UNIPROTKB|E1C7A6	468	OMA1 "Uncharacterized protein"	0.162	0.106	0.44	4.5e-08
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.152	0.143	0.425	5.1e-08
MGI|MGI:1914263	521	Oma1 "OMA1 homolog, zinc metal	0.149	0.088	0.434	1.1e-07
DICTYBASE|DDB_G0289335	687	DDB_G0289335 "Metalloendopepti	0.285	0.128	0.370	2.1e-07

TAIR|locus:2165356 AT5G51740 [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 176/318 (55%), Positives = 236/318 (74%)

Query:     1 MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
             M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct:     1 MSWYRRTKLVFDSLRRNINPKILPRSHVT---SRINNPIGSSNPSAKFSSISSREVGLRS 57

Query:    52 YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
             ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct:    58 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query:   112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
             ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct:   118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query:   172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
             AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct:   178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query:   231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
             ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct:   236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query:   291 LEHFRTDAEIATIIGHEV 308
             L HF++DAE+AT+IGHEV
Sbjct:   294 LNHFKSDAEVATVIGHEV 311

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

ASPGD|ASPL0000044232 AN1850 [Emericella nidulans (taxid:162425)]

 Score = 128 (50.1 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 22/51 (43%), Positives = 37/51 (72%)

Query:   259 LDGLNWEVLVVNEP-VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             +DG +W+V V+ +  ++NAF LPGGK+ VFTG+L   + +  +A ++GHE+
Sbjct:   186 IDGADWKVHVIKDDNMVNAFVLPGGKVFVFTGILPICKDEDGLAAVLGHEI 236

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

POMBASE|SPAP14E8.04 oma1 "metallopeptidase Oma1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 121 (47.7 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:   255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE
Sbjct:   144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHE 196

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000001795 OMA1 "Metalloendopeptidase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct:   152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0001997 orf19.3827 [Candida albicans (taxid:5476)]

 Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             +HL  L WE+ ++    +  NAF LP GKI +F+ ++   + +  +AT++ HE+
Sbjct:   134 NHLKSLKWEINIIQNDSLPPNAFILPNGKIFIFSSIMPICKNEDGLATVLSHEL 187

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1304821 Oma1 "zinc metallopeptidase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE+
Sbjct:   262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEI 308

GO:0002024 "diet induced thermogenesis" evidence=ISO;ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO;ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0006629 "lipid metabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO;ISS

GO:0034982 "mitochondrial protein processing" evidence=IEA;ISO

GO:0042407 "cristae formation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO;ISS

UNIPROTKB|E1C7A6 OMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query:   259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             +  L W + VV+EP +NAF LP G++ VFTGLL       +++ I+GHE+
Sbjct:   237 VSALTWAIHVVDEPEVNAFVLPNGEVFVFTGLLNAVSDIHQLSFILGHEI 286

GO:0002024 "diet induced thermogenesis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE+
Sbjct:   125 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEI 171

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1914263 Oma1 "OMA1 homolog, zinc metallopeptidase (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query:   263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE+
Sbjct:   280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHEI 325

GO:0002024 "diet induced thermogenesis" evidence=ISO

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=IMP

GO:0042407 "cristae formation" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO

DICTYBASE|DDB_G0289335 DDB_G0289335 "Metalloendopeptidase OMA1, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 33/89 (37%), Positives = 46/89 (51%)

Query:   220 ERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279
             E G  E K    D  L +    Q+R +   K +   T   D L WE  VVN  V+NA  L
Sbjct:   397 EMGYEEMKTQLSDYFLPENNALQNRVREVAKRIIDVTDRPD-LAWECHVVNSEVVNACVL 455

Query:   280 PGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
             P GKI VF+ L +   ++ E+A++I HE+
Sbjct:   456 PNGKIFVFSKLFDICESEDELASVISHEI 484

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	4e-12
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	3e-09
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	3e-09
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	5e-08

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLL 291
           L +  +Q+     +     + ++      WEV VV+ P  NAF L GGK   +VV TGLL
Sbjct: 29  LRNARLQR---VVER---LADSAGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLL 82

Query: 292 EHFRTDAEIATIIGHEV 308
               T+ E+A ++GHE+
Sbjct: 83  LA-LTEDELAAVLGHEI 98

Length = 223

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV 308
           A         EV ++  P  NAF L G    G++VV TGLL+    D E+  ++ HE+
Sbjct: 109 ARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHEL 165

Length = 302

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           A + L    +   +VN+  INAF  PGG +VV TGLL     ++E+A +I HE+
Sbjct: 85  AAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHEI 138

Length = 484

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 211 TLRALSENSERGKTEGKWHQE------DEILDDKWVQQSRKKGQEKGLQSATSHLDGLNW 264
           T+  + +N    +   + H         E  D K  +   +     G  +A S      +
Sbjct: 32  TVDNVQKNDPLAQMGARQHPRILATYGGEYRDPKLERMVARIV---GALTAVSENPQQTY 88

Query: 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
            + ++N P INAF LPGG + +  GLL      +E+A ++ HE+
Sbjct: 89  RITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHEM 132

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG2661	424	consensus Peptidase family M48 [Posttranslational	100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.64
COG4784	479	Putative Zn-dependent protease [General function p	99.55
COG0501	302	HtpX Zn-dependent protease with chaperone function	98.99
PRK02870	336	heat shock protein HtpX; Provisional	98.94
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	98.93
PRK03982	288	heat shock protein HtpX; Provisional	98.73
PRK01345	317	heat shock protein HtpX; Provisional	98.69
PRK03001	283	M48 family peptidase; Provisional	98.54
PRK04897	298	heat shock protein HtpX; Provisional	98.53
PRK03072	288	heat shock protein HtpX; Provisional	98.51
PRK05457	284	heat shock protein HtpX; Provisional	98.48
PRK01265	324	heat shock protein HtpX; Provisional	98.47
PRK02391	296	heat shock protein HtpX; Provisional	98.43
KOG2719	428	consensus Metalloprotease [General function predic	93.05
PF13203	292	DUF2201_N: Putative metallopeptidase domain	80.93

>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-52  Score=399.14  Aligned_cols=234  Identities=29%  Similarity=0.457  Sum_probs=214.8

Q ss_pred             ChhhhhhhHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCcccccCCcccceeeccccccccCCCCCCCCcce
Q 021758            1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY   74 (308)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   74 (308)
                      |.|||+.|+.+|.+++ ++++|.|+++...+.+ .+.++.    .+...+.+.|++++.+.-+.++..-+|||.+.+.+|
T Consensus        44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y  123 (424)
T KOG2661|consen   44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY  123 (424)
T ss_pred             eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence            7899999999999999 9999999999877776 333322    445578899999999999999999999999999999


Q ss_pred             eEeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHhhccCccCCccchhccCCCHHHHHHHHHHHHHHHHHHhc
Q 021758           75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK  154 (308)
Q Consensus        75 y~~~~~~~~hf~~rg~~~w~~~~r~~~~~~~vg~g~~~~~y~~~lEtvP~TgR~rfillS~~~E~~LGeq~y~qil~e~~  154 (308)
                      |+.+++.|+||+|++.-+|++|+|++++++++|+.++++|||+|+|++|+|||+||+++|+++|+.||+.+|+++++||+
T Consensus       124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq  203 (424)
T KOG2661|consen  124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ  203 (424)
T ss_pred             HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999998876667899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhcccccccccCcccccccc
Q 021758          155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI  234 (308)
Q Consensus       155 ~kiLP~~hP~s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l  234 (308)
                      ++|||+.||++.+|++|+++||+++..                                                     
T Consensus       204 ~~mLp~~hp~sl~V~~vlk~iIea~~~-----------------------------------------------------  230 (424)
T KOG2661|consen  204 NDMLPEKHPRSLAVKEVLKHIIEANKD-----------------------------------------------------  230 (424)
T ss_pred             CccCCcCCchhhHHHHHHHHHHHHhcc-----------------------------------------------------
Confidence            999999999999999999999998520                                                     


Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeCCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       235 ~~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalPGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                                           ...+++..|+++||+||.+||||||||+||||||+|..|++||+||+|||||+
T Consensus       231 ---------------------~~slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~  283 (424)
T KOG2661|consen  231 ---------------------VPSLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEI  283 (424)
T ss_pred             ---------------------CCcccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHH
Confidence                                 01256889999999999999999999999999999999999999999999995

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.64  E-value=3.7e-16  Score=156.08  Aligned_cols=106  Identities=29%  Similarity=0.438  Sum_probs=85.6

Q ss_pred             ccCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCccc
Q 021758          121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET  199 (308)
Q Consensus       121 tvP~TgR~rfillS~~~E~~LGeq~y~qil~e~~~kiLP~~hP~-s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~  199 (308)
                      ..|.+|....-.+|+++|..+|...+.|+..+  ..++  .||+ ...|+.++++|++                      
T Consensus        32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~~~i--~D~el~~yv~~~g~rL~~----------------------   85 (484)
T COG4783          32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--VPLI--RDPELEEYVNSLGQRLAA----------------------   85 (484)
T ss_pred             hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--CCCc--CCHHHHHHHHHHHHHHHH----------------------
Confidence            46888999999999999999999877776553  2232  2343 3345555555544                      


Q ss_pred             cccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEe
Q 021758          200 DFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL  279 (308)
Q Consensus       200 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfal  279 (308)
                                                                              .+++++.+++|++|+|+.+|||++
T Consensus        86 --------------------------------------------------------~a~~~~~~f~f~lV~d~~iNAFA~  109 (484)
T COG4783          86 --------------------------------------------------------AADLVKTPFTFFLVNDDSINAFAT  109 (484)
T ss_pred             --------------------------------------------------------hcCCCCCCeEEEEecCCccchhhc
Confidence                                                                    344567789999999999999999


Q ss_pred             CCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       280 PGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      |||+|+|+||||..++||+|||+||||||
T Consensus       110 ~Gg~v~vntGLll~ae~esElagViAHEi  138 (484)
T COG4783         110 PGGYVVVNTGLLLTAENESELAGVIAHEI  138 (484)
T ss_pred             CCceEEEehHHHHhcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999996

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=99.55  E-value=1.1e-14  Score=141.31  Aligned_cols=111  Identities=27%  Similarity=0.445  Sum_probs=90.5

Q ss_pred             ccCccCCccchhccCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHhcccccccccccCCCC
Q 021758          118 NLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYAS  196 (308)
Q Consensus       118 ~lEtvP~TgR~rfillS~~~E~~-LGeq~y~qil~e~~~kiLP~~hP~s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~  196 (308)
                      .|...|-|+-.-+..|++.++.. ||.++-..|+++|++..   .||-.+|   .+.||+.++                 
T Consensus        21 ~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler---~Vari~g~l-----------------   77 (479)
T COG4784          21 ESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLER---MVARIVGAL-----------------   77 (479)
T ss_pred             ccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHH---HHHHHHhHh-----------------
Confidence            56778999999999999988776 99999999999999764   3554332   233444332                 


Q ss_pred             ccccccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCce
Q 021758          197 TETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINA  276 (308)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NA  276 (308)
                                                                               +..++.++..|.+.|+|+|.+||
T Consensus        78 ---------------------------------------------------------t~~S~~p~q~YriTilnSP~INA  100 (479)
T COG4784          78 ---------------------------------------------------------TAVSENPQQTYRITILNSPNINA  100 (479)
T ss_pred             ---------------------------------------------------------hhhccCCCceEEEEEecCCCccc
Confidence                                                                     12244567899999999999999


Q ss_pred             eEeCCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          277 FCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       277 falPGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      |+||||.++|+.|||..+.++.|||+||+|||
T Consensus       101 FALPGGYlYitRGLlAland~sEvAAVl~HEm  132 (479)
T COG4784         101 FALPGGYLYITRGLLALANDSSEVAAVLAHEM  132 (479)
T ss_pred             cccCCceEEEehhHHHHcCCHHHHHHHHHhhh
Confidence            99999999999999999999999999999997

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3e-10  Score=105.20  Aligned_cols=47  Identities=40%  Similarity=0.673  Sum_probs=43.8

Q ss_pred             CCCeEEEEEeCCCCceeEeCC----CeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       261 ~~~w~v~Vv~~~~~NAfalPG----G~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ...|++.|++++.+||||+|+    |+|+|++||++.+ |||||++|||||+
T Consensus       115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHEl  165 (302)
T COG0501         115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHEL  165 (302)
T ss_pred             CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHH
Confidence            447999999999999999999    7999999999966 9999999999996

>PRK02870 heat shock protein HtpX; Provisional

Probab=98.94  E-value=5.7e-09  Score=101.54  Aligned_cols=45  Identities=29%  Similarity=0.566  Sum_probs=42.2

Q ss_pred             CeEEEEEeCCCCceeEe----CCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          263 NWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       263 ~w~v~Vv~~~~~NAfal----PGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      .+++++++++.+||||+    |++.|+|++||++.+ |+|||++||||||
T Consensus       133 ~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHEL  181 (336)
T PRK02870        133 MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHEL  181 (336)
T ss_pred             CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHH
Confidence            46999999999999999    578999999999998 9999999999996

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=98.93  E-value=6.2e-10  Score=98.42  Aligned_cols=67  Identities=33%  Similarity=0.503  Sum_probs=48.7

Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeCCCe---EEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       235 ~~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalPGG~---I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      .+++++++.++.      +++..+.....|+++|++++.+||||+|+|.   |+|++||+..+ |+|||++|||||+
T Consensus        28 ~~~~~L~~~v~~------l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHEl   97 (226)
T PF01435_consen   28 LEDPELRRIVEE------LARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHEL   97 (226)
T ss_dssp             -HHHHHHHHHHH------HHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH------HHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHH
Confidence            456666666653      1222223445689999999999999999999   99999999655 9999999999996

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK03982 heat shock protein HtpX; Provisional

Probab=98.73  E-value=1.4e-08  Score=96.07  Aligned_cols=44  Identities=30%  Similarity=0.489  Sum_probs=40.1

Q ss_pred             eEEEEEeCCCCceeEe---C-CCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          264 WEVLVVNEPVINAFCL---P-GGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       264 w~v~Vv~~~~~NAfal---P-GG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      .+++|++++.+|||++   | +|.|+|++||++.+ |+|||++|||||+
T Consensus        86 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHEl  133 (288)
T PRK03982         86 PKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHEL  133 (288)
T ss_pred             CeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHH
Confidence            4899999999999999   4 46788999999998 8999999999996

>PRK01345 heat shock protein HtpX; Provisional

Probab=98.69  E-value=1.9e-08  Score=96.91  Aligned_cols=63  Identities=22%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeC----CCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       237 D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalP----GG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      +|++.+.++.      ++...+++  ..+++|++++.+|||+++    ++.|+|++|||+.+ |+|||++||||||
T Consensus        66 ~p~L~~~v~~------La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHEl  132 (317)
T PRK01345         66 APELYRMVRD------LARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHEL  132 (317)
T ss_pred             CHHHHHHHHH------HHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHH
Confidence            4555555432      23334444  248999999999999994    34799999999998 8899999999996

>PRK03001 M48 family peptidase; Provisional

Probab=98.54  E-value=9.8e-08  Score=90.07  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=39.8

Q ss_pred             eEEEEEeCCCCceeEeCC----CeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       264 w~v~Vv~~~~~NAfalPG----G~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      .+++|++++.+|||+.+.    +.|+|++||++.+ |+|||++||||||
T Consensus        85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHEl  132 (283)
T PRK03001         85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHEL  132 (283)
T ss_pred             CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHH
Confidence            489999999999999964    3599999999988 9999999999996

>PRK04897 heat shock protein HtpX; Provisional

Probab=98.53  E-value=9.7e-08  Score=91.05  Aligned_cols=64  Identities=23%  Similarity=0.404  Sum_probs=49.4

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeC----CCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalP----GG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ++|++.+.++.      ++...+++  ..++++++++.+|||+.+    ++.|+|++||++.+ |+|||++|||||+
T Consensus        78 ~~p~L~~~v~~------la~~~gip--~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHEl  145 (298)
T PRK04897         78 EAPELWHIVED------MAMVAQIP--MPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEI  145 (298)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHH
Confidence            34666665543      23334443  348999999999999995    35699999999999 9999999999996

>PRK03072 heat shock protein HtpX; Provisional

Probab=98.51  E-value=1.1e-07  Score=90.33  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeC---CC-eEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP---GG-KIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalP---GG-~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ++|++.+.++.      ++...+++  ..+++|++++.+|||+..   ++ .|+|++||++.+ |+|||++|||||+
T Consensus        68 ~~p~L~~~v~~------la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHEl  135 (288)
T PRK03072         68 QAPAMYRIVRE------LSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHEL  135 (288)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHH
Confidence            46666666543      23334443  348999999999999993   22 489999999998 9999999999996

>PRK05457 heat shock protein HtpX; Provisional

Probab=98.48  E-value=1.6e-07  Score=89.28  Aligned_cols=45  Identities=33%  Similarity=0.549  Sum_probs=40.0

Q ss_pred             CeEEEEEeCCCCceeEeCC----CeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          263 NWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       263 ~w~v~Vv~~~~~NAfalPG----G~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ..+++|++++.+|||+.+.    +.|+|++||++.+ |+|||++|||||+
T Consensus        94 ~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHEl  142 (284)
T PRK05457         94 MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEI  142 (284)
T ss_pred             CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHH
Confidence            3579999999999999963    3489999999999 8999999999996

>PRK01265 heat shock protein HtpX; Provisional

Probab=98.47  E-value=1.7e-07  Score=90.90  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=48.6

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEe----CCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       237 D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfal----PGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      +|++.+.++.      ++...+.+  ..++++++++.+|||+.    +++.|+|++||++.+ |+|||.+|||||+
T Consensus        82 ~~~L~~~v~~------la~~~g~~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHEl  148 (324)
T PRK01265         82 YGWLYSIVAE------VAKYNGIR--VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHEL  148 (324)
T ss_pred             cHHHHHHHHH------HHHHcCCC--CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHH
Confidence            4555555542      23334443  45899999999999996    357899999999999 9999999999996

>PRK02391 heat shock protein HtpX; Provisional

Probab=98.43  E-value=2.8e-07  Score=88.15  Aligned_cols=64  Identities=23%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeCC----CeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       236 ~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalPG----G~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ++|++.+.++.      ++...+.+  ..++++++++.+|||+.+.    +.|+|++||++.+ |+|||.+|||||+
T Consensus        74 ~~p~L~~~v~~------la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHEl  141 (296)
T PRK02391         74 EYPELHAMVER------LCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHEL  141 (296)
T ss_pred             hCHHHHHHHHH------HHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHH
Confidence            35566655542      23334443  2489999999999999943    3589999999998 8999999999996

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=93.05  E-value=0.12  Score=52.55  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             EEEEEeC----CCCceeEeCC---CeEEEcHhHhh-cc-CCHHHHHHHHhcCC
Q 021758          265 EVLVVNE----PVINAFCLPG---GKIVVFTGLLE-HF-RTDAEIATIIGHEV  308 (308)
Q Consensus       265 ~v~Vv~~----~~~NAfalPG---G~I~V~tGLl~-~~-~nddeLAaVLaHEi  308 (308)
                      .+.|++.    ...|||-..=   -.|++|.-|+. .. .|+||++||+|||+
T Consensus       236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HEL  288 (428)
T KOG2719|consen  236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHEL  288 (428)
T ss_pred             EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHh
Confidence            5677772    3489998843   46999999993 33 38999999999996

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=80.93  E-value=1.6  Score=41.13  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             EEEEEeCCCCceeEeCCCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       265 ~v~Vv~~~~~NAfalPGG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      .+.++.++.+-.++..|..|+++-.++..+ +.+|+.+||+||+
T Consensus        26 ~l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~Hev   68 (292)
T PF13203_consen   26 SLPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEV   68 (292)
T ss_pred             hCeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHH
Confidence            334455777889999999999999999887 8899999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
3c37_A	253	X-ray Structure Of The Putative Zn-dependent Peptid		9e-05

>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase Q74d82 At The Resolution 1.7 A. Northeast Structural Genomics Consortium Target Gsr143a Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
           VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE+
Sbjct: 68  VVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEI 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	3e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 254 SATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV 308
            + +     ++   VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE+
Sbjct: 54  LSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEI 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 43/325 (13%), Positives = 85/325 (26%), Gaps = 105/325 (32%)

Query: 8   KAALDAFRNLSSKAVPKSPVQES--CSRVY-------SNGSANSAKFSSGF--YSYSCIS 56
           K   D  +++ SK      +      S          S       KF       +Y  + 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  QRLRNSYCNPNFNTAKRYYYVDRYH------VQHFRPRGP-----RKWLQNPRTVFIVVV 105
             ++     P+  T       DR +       ++   R       R+ L   R    V++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
            G                                         +  +  GK        +
Sbjct: 156 DG-----------------------------------------VLGS--GK--------T 164

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
                +       +Q  +  +  W ++   ++    +       + L+ L    +   T 
Sbjct: 165 WVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVL--VVNEPVINAF---CLP 280
              H  +  L    +Q   ++     L  +  + + L   VL  V N    NAF   C  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-- 266

Query: 281 GGKIVVFTGLLEHFRTDAEIATIIG 305
             KI++ T      R   ++   + 
Sbjct: 267 --KILLTT------R-FKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	99.86
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.23
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	97.39

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=99.86  E-value=3.9e-22  Score=182.64  Aligned_cols=105  Identities=26%  Similarity=0.485  Sum_probs=85.4

Q ss_pred             cCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 021758          122 VPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (308)
Q Consensus       122 vP~TgR~rfillS~~~E~~LGeq~y~qil~e~~~kiLP~~hP~-s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~~  200 (308)
                      +|.|||++++++|+++|.++|++.++++.++++    |..+|. ..+|++|++++...+                     
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~~~----~~~d~~l~~~l~~l~~~l~~~~---------------------   57 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ----PVNDPEVQRYVDKVGKRLLSGA---------------------   57 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTTCC----BCCCHHHHHHHHHHHHHHHHTS---------------------
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHhC---------------------
Confidence            477999999999999999999999999988754    344664 668888888775421                     


Q ss_pred             ccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceeEeC
Q 021758          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (308)
Q Consensus       201 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~D~~v~~~~~~g~~~~~~~~~s~l~~~~w~v~Vv~~~~~NAfalP  280 (308)
                                                                               ..+..+|+++|++++.+||||+|
T Consensus        58 ---------------------------------------------------------~~~~~~~~v~v~~~~~~NAfa~~   80 (253)
T 3c37_A           58 ---------------------------------------------------------RAVEFDYVFKVVKDDSVNAFAIP   80 (253)
T ss_dssp             ---------------------------------------------------------SCCCSCCEEEEECCCSCCEEEET
T ss_pred             ---------------------------------------------------------CCCCCCeEEEEEeCCCCCeeEcC
Confidence                                                                     11356899999999999999999


Q ss_pred             CCeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          281 GGKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       281 GG~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ||+|+|++|||+.++|+|||++||||||
T Consensus        81 gg~I~v~~gLl~~l~~~~ELaaVLaHEl  108 (253)
T 3c37_A           81 GGRVYVHTGLLKAADNETELAGVLAHEI  108 (253)
T ss_dssp             TTEEEEEHHHHHHCSSHHHHHHHHHHHH
T ss_pred             CCeEEeeHHHHhhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999996

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.23  E-value=1.5e-11  Score=99.45  Aligned_cols=44  Identities=34%  Similarity=0.465  Sum_probs=40.9

Q ss_pred             eEEEEEeCCCCceeEeCC----CeEEEcHhHhhccCCHHHHHHHHhcCC
Q 021758          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEV  308 (308)
Q Consensus       264 w~v~Vv~~~~~NAfalPG----G~I~V~tGLl~~~~nddeLAaVLaHEi  308 (308)
                      ++++|++++.+||||+|+    +.|+|++||++.+ |+|||++|||||+
T Consensus        44 ~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHEl   91 (107)
T 3cqb_A           44 PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEV   91 (107)
T ss_dssp             CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHH
Confidence            699999999999999985    4599999999999 9999999999995

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=97.39  E-value=9.8e-05  Score=73.86  Aligned_cols=44  Identities=34%  Similarity=0.570  Sum_probs=37.3

Q ss_pred             eEEEEEe----CCCCceeEeC---CCeEEEcHhHhhc-------------------------------------cCCHHH
Q 021758          264 WEVLVVN----EPVINAFCLP---GGKIVVFTGLLEH-------------------------------------FRTDAE  299 (308)
Q Consensus       264 w~v~Vv~----~~~~NAfalP---GG~I~V~tGLl~~-------------------------------------~~ndde  299 (308)
                      -+++|++    ++..|||+..   +..|++++.+++.                                     | |+||
T Consensus       250 ~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~E  328 (482)
T 4aw6_A          250 TKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEE  328 (482)
T ss_dssp             EEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC------------------------------------CCC-CHHH
T ss_pred             CcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhcccccccccccccccccccccccchhhcccchhhccCC-CHHH
Confidence            5999999    7789999983   3469999999986                                     5 8999


Q ss_pred             HHHHHhcCC
Q 021758          300 IATIIGHEV  308 (308)
Q Consensus       300 LAaVLaHEi  308 (308)
                      |++|||||+
T Consensus       329 l~aVlaHEl  337 (482)
T 4aw6_A          329 VLAVLGHEL  337 (482)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00