Citrus Sinensis ID: 021796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEcccccEEccccccccccccccccccccccccHHHHHccccEEEEEEEcccccEEEEEccccccccccccccccccccccccccEEccHHHHHHHHHcccccccccccEEEEEEEEEEEEEEcccEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEcccEEEEEEEEEcEEEccccccccccccEEEEcccccEEccccEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEEcccccEEEcccHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccEEccccccHHHHHccccccccccccccccEEccHHHHHHHHHHHcccccccccEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEcccHHHHccEEEEEEEcccccEEEEEEccccHHHcHEEEEcccccEEEccHHHHHEccccccEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mapgggicKEVIESSiefsdyematssvelrgspcrkattgfsgnlgttsnndvhellecpvclnlmyppiyqcpnghtlcssckarvrtgcptcrhelgniRCLALEKVAESlelpcryqiwgcqdifpyysklkhekncnyrpyncpyagaecsvtgdIPLLVRHLkndhkvdmhdgstfnhRYVKANALEIENATWMLTVFncfgrhfclhFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLevggngrkltwqgiprsirdshkrvrdsqdGLIIQRNLalffsggdrqELKLKVAGRIWKE
Flexible Loop (DISEMBL)
MAPGGGICKEVIESSIEFSDYEMATSsvelrgspcrKATTgfsgnlgttsnnDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYslevggngrkltwqgiprsirdshkrvrdsqdgLIIQRNLalffsggdrqelklkvagriwke
Low Complexity Region (SEG)
MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE
Disordered region (IsUnstruct)
*******CKEVI***I*************************FSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR*************DGLIIQRNLALFFSGGDRQELKLKVAGRIW**
Disordered Region (DISOPRED)
******************************************************HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTW***************DSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWK*
Disordered Region (DISEMBL)
MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIR********SQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE
Disordered Region (DISPRO)
***************************************************NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9M2P4	308	E3 ubiquitin-protein liga	yes	no	1.0	0.996	0.768	1e-141
P93748	305	Putative E3 ubiquitin-pro	no	no	0.986	0.993	0.753	1e-137
Q84JL3	326	E3 ubiquitin-protein liga	no	no	0.856	0.806	0.781	1e-125
Q9STN8	327	E3 ubiquitin-protein liga	no	no	0.872	0.819	0.75	1e-123
Q8S3N1	309	E3 ubiquitin-protein liga	no	no	0.833	0.828	0.761	1e-121
Q86MW9	371	E3 ubiquitin-protein liga	N/A	no	0.853	0.706	0.362	2e-44
Q06985	282	E3 ubiquitin-protein liga	yes	no	0.775	0.843	0.372	6e-43
Q920M9	282	E3 ubiquitin-protein liga	yes	no	0.775	0.843	0.372	8e-43
P61092	282	E3 ubiquitin-protein liga	yes	no	0.775	0.843	0.372	8e-43
Q8IUQ4	282	E3 ubiquitin-protein liga	yes	no	0.775	0.843	0.372	1e-42

>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1

 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/307 (76%), Positives = 263/307 (85%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGG   KEV+ES+    DYE+ T+ VE+  +   K  +   G  G  SNN V+ELLEC
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC NLMYPPI+QCPNGHTLCS+CK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCRY
Sbjct: 61  PVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 120

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           Q  GC DIFPYYSKLKHE++C +RPY CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG 
Sbjct: 121 QNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGC 180

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE EA+
Sbjct: 181 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAK 240

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVG +GRKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSGGDRQELKL+V
Sbjct: 241 KFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRV 300

Query: 301 AGRIWKE 307
            GRIWKE
Sbjct: 301 TGRIWKE 307

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/308 (75%), Positives = 261/308 (84%), Gaps = 5/308 (1%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGT-TSNNDVHELLE 59
           MAPGG   KE +ES+    DYE+  + VE    P    T   SG++G   S+N V+ELLE
Sbjct: 1   MAPGGSALKEALESNSTGVDYEVKMAKVEANSKP----TKSGSGSIGKFHSSNGVYELLE 56

Query: 60  CPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCR 119
           CPVC NLMYPPI+QCPNGHTLCSSCK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCR
Sbjct: 57  CPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 116

Query: 120 YQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDG 179
           YQ  GCQDIFPYYSKLKHE++C +R Y+CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG
Sbjct: 117 YQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDG 176

Query: 180 STFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEA 239
            TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE EA
Sbjct: 177 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 236

Query: 240 RQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLK 299
           ++FSYSLEVG + RKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSG D++ELKL+
Sbjct: 237 KKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLR 296

Query: 300 VAGRIWKE 307
           V GRIWKE
Sbjct: 297 VTGRIWKE 304

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/265 (78%), Positives = 234/265 (88%), Gaps = 2/265 (0%)

Query: 43  SGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNI 102
           SG L TT++  VHELLECPVC N MYPPI+QC NGHTLCS+CKARV   CPTCR ELG+I
Sbjct: 48  SGLLPTTTS--VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDI 105

Query: 103 RCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIP 162
           RCLALEKVAESLELPC++   GC +IFPYYSKLKHE  CN+RPY+CPYAG+ECSVTGDIP
Sbjct: 106 RCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIP 165

Query: 163 LLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGM 222
            LV HL++DHKVDMH G TFNHRYVK+N  E+ENATWMLTVF+CFG++FCLHFEAF LGM
Sbjct: 166 FLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGM 225

Query: 223 APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQR 282
           APVYMAFLRFMGDE EAR ++YSLEVGG GRKL W+G PRS+RDSH++VRDS DGLIIQR
Sbjct: 226 APVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQR 285

Query: 283 NLALFFSGGDRQELKLKVAGRIWKE 307
           N+ALFFSGGDR+ELKL+V GRIWKE
Sbjct: 286 NMALFFSGGDRKELKLRVTGRIWKE 310

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/268 (75%), Positives = 229/268 (85%)

Query: 40  TGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHEL 99
           T   G   T     V+ELLECPVC   MYPPI+QC NGHTLCS+CK RV   CPTCR EL
Sbjct: 44  TNIVGPTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQEL 103

Query: 100 GNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTG 159
           G+IRCLALEKVAESLELPC++   GC +IFPYYSKLKHE  CN+RPY+CPYAG+EC + G
Sbjct: 104 GDIRCLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVG 163

Query: 160 DIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH 219
           DIP LV HL++DHKVDMH GSTFNHRYVK+N  E+ENATWMLTVF+CFG++FCLHFEAF 
Sbjct: 164 DIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQ 223

Query: 220 LGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLI 279
           LGM PVYMAFLRFMGDEE+AR +SYSLEVGG+GRKLTW+G PRSIRDSH++VRDS DGLI
Sbjct: 224 LGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLI 283

Query: 280 IQRNLALFFSGGDRQELKLKVAGRIWKE 307
           IQRN+ALFFSGGDR+ELKL+V G+IWKE
Sbjct: 284 IQRNMALFFSGGDRKELKLRVTGKIWKE 311

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 195/256 (76%), Positives = 224/256 (87%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVA 111
             V+ELLECPVC N MYPPI+QC NGHTLCS+CK+RV   CPTCR ELG+IRCLALEKVA
Sbjct: 38  TSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVA 97

Query: 112 ESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKND 171
           ESLELPC+Y   GC  IFPYYSKLKHE  CN+RPY+CPYAG+EC+  GDI  LV HL++D
Sbjct: 98  ESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDD 157

Query: 172 HKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLR 231
           HKVDMH G TFNHRYVK+N  E+ENATWMLTVF CFG++FCLHFEAF LGMAPVYMAFLR
Sbjct: 158 HKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLR 217

Query: 232 FMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGG 291
           FMGDE++AR ++YSLEVGG+GRK TW+G PRS+RDSH++VRDS DGLIIQRN+ALFFSGG
Sbjct: 218 FMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGG 277

Query: 292 DRQELKLKVAGRIWKE 307
           D++ELKL+V GRIWKE
Sbjct: 278 DKKELKLRVTGRIWKE 293

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates the ubiquitin-mediated degradation of NAC021/NAC022, a transcription activator that functions downstream of the auxin signals, thereby acting as a down-regulator of auxin signals. Involved in the formation of lateral roots.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86MW9|SINA_SCHMA E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 146/270 (54%), Gaps = 8/270 (2%)

Query: 24  ATSSVELRGSPCRKATTG---FSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTL 80
           +T S+ L GS    + T       N   +S+ D+  L ECPVC++   PPI QC +GH +
Sbjct: 87  STCSMSLPGSMSSASDTVCNILPHNTSDSSSIDLASLFECPVCMDYALPPIMQCQSGHIV 146

Query: 81  CSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKN 140
           C+SC++++ + CPTCR  L NIR LA+EK+A S+  PC+Y   GC + F Y SK +HE  
Sbjct: 147 CASCRSKL-SSCPTCRGNLDNIRNLAMEKLASSVLFPCKYSTSGCPETFHYTSKSEHEAA 205

Query: 141 CNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHK-VDMHDGSTFNHRYVKANALEIENATW 199
           C YRPY+CP  GA C   G++  ++ HL + HK +    G         A  + +  A  
Sbjct: 206 CEYRPYDCPCPGASCKWLGELEQVMPHLVHHHKSITTLQGEDI---VFLATDISLPGAVD 262

Query: 200 MLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQG 259
            + + +CFG  F L  E        ++ A ++ +G  ++A QF Y LE+ G+ R+LTW+ 
Sbjct: 263 WVMMQSCFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEA 322

Query: 260 IPRSIRDSHKRVRDSQDGLIIQRNLALFFS 289
            PRSI D  +      D L+   N A  F+
Sbjct: 323 CPRSIHDGVQSAIAVSDCLVFDSNTAHSFA 352

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates the ubiquitin-mediated degradation of nuclear receptors for retinoids SmRXR1 and SmRXR2.

Schistosoma mansoni (taxid: 6183)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 48  TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLAL 107
           T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+
Sbjct: 29  TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAV 87

Query: 108 EKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRH 167
           EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ H
Sbjct: 88  EKVANSVLFPCKYSASGCEITLPHTKKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147

Query: 168 LKNDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPV 225
           L + HK +    G         A  + +  A   + + +CFG HF L  E          
Sbjct: 148 LMHQHKSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQ 204

Query: 226 YMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLA 285
           + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264

Query: 286 LFFS 289
             F+
Sbjct: 265 QLFA 268

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Confers constitutive instability to HIPK2 through proteasomal degradation. Probably triggers the ubiquitin-mediated degradation of many substrates. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 48  TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLAL 107
           T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+
Sbjct: 29  TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAM 87

Query: 108 EKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRH 167
           EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ H
Sbjct: 88  EKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147

Query: 168 LKNDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPV 225
           L + HK +    G         A  + +  A   + + +CFG HF L  E          
Sbjct: 148 LMHQHKSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQ 204

Query: 226 YMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLA 285
           + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264

Query: 286 LFFS 289
             F+
Sbjct: 265 QLFA 268

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 48  TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLAL 107
           T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+
Sbjct: 29  TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAM 87

Query: 108 EKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRH 167
           EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ H
Sbjct: 88  EKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147

Query: 168 LKNDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPV 225
           L + HK +    G         A  + +  A   + + +CFG HF L  E          
Sbjct: 148 LMHQHKSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQ 204

Query: 226 YMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLA 285
           + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264

Query: 286 LFFS 289
             F+
Sbjct: 265 QLFA 268

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Required for completion of meiosis I in males. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 6/244 (2%)

Query: 48  TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLAL 107
           T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+
Sbjct: 29  TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAM 87

Query: 108 EKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRH 167
           EKVA S+  PC+Y   GC+   P+  K  HE+ C +RPY+CP  GA C   G +  ++ H
Sbjct: 88  EKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147

Query: 168 LKNDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPV 225
           L + HK +    G         A  + +  A   + + +CFG HF L  E          
Sbjct: 148 LMHQHKSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQ 204

Query: 226 YMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLA 285
           + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264

Query: 286 LFFS 289
             F+
Sbjct: 265 QLFA 268

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription regulation, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
225435638	308	PREDICTED: E3 ubiquitin-protein ligase S	1.0	0.996	0.817	1e-150
147767417	308	hypothetical protein VITISV_039358 [Viti	1.0	0.996	0.811	1e-148
224076034	311	predicted protein [Populus trichocarpa]	1.0	0.987	0.777	1e-143
255587731	304	Ubiquitin ligase SINAT2, putative [Ricin	0.986	0.996	0.765	1e-141
15230936	308	E3 ubiquitin-protein ligase SINAT2 [Arab	1.0	0.996	0.768	1e-140
225441499	315	PREDICTED: E3 ubiquitin-protein ligase S	0.996	0.971	0.762	1e-139
297817142	309	seven in absentia family protein [Arabid	0.996	0.990	0.763	1e-139
224088178	307	predicted protein [Populus trichocarpa]	0.996	0.996	0.762	1e-138
359806480	309	uncharacterized protein LOC100813966 [Gl	1.0	0.993	0.746	1e-138
224057140	286	predicted protein [Populus trichocarpa]	0.928	0.996	0.796	1e-137

>gi|225435638|ref|XP_002285659.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera] gi|297746416|emb|CBI16472.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/307 (81%), Positives = 276/307 (89%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGGGICKEV ES   F+DY++ T+++ELR SP RKATTG  G  G  S + VHELLEC
Sbjct: 1   MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVHELLEC 60

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC++LM+PPI+QCPNGHTLCS+CKARV   CPTCR ELGNIRCLALEK+AESLELPCRY
Sbjct: 61  PVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALEKIAESLELPCRY 120

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           QI+GC DIFPYYSKLKHE+NC +RPY+CPYAGAECSVTGDIPLLV HLK+DHKVDMHDG 
Sbjct: 121 QIFGCHDIFPYYSKLKHEQNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGC 180

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAFHLGMAPVYMAFLRFMGDE EAR
Sbjct: 181 TFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEAR 240

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVGG GRKL WQG+PRSIRDSHK VRDSQDGL+IQR LALFFSGG+RQ+LKLKV
Sbjct: 241 KFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLVIQRKLALFFSGGERQQLKLKV 300

Query: 301 AGRIWKE 307
           AGRIWKE
Sbjct: 301 AGRIWKE 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767417|emb|CAN66717.1| hypothetical protein VITISV_039358 [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/307 (81%), Positives = 272/307 (88%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGGGICKEV ES   F+DY++ T+++ELR SP RKATTG  G  G  S + VHELLEC
Sbjct: 1   MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGXPSTSGVHELLEC 60

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC++LM+PPI+QCPNGHTLCS+CKARV   CPTCR ELGNIRCLAL K+AESLE PCRY
Sbjct: 61  PVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALVKIAESLEFPCRY 120

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           QI+GC DIFPYYSKLKHE NC +RPY+CPYAGAECSVTGDIPLLV HLK+DHKVDMHDG 
Sbjct: 121 QIFGCHDIFPYYSKLKHEXNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGC 180

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAFHLGMAPVYMAFLRFMGDE EAR
Sbjct: 181 TFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEAR 240

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVGG GRKL WQG+PRSIRDSHK VRDSQDGL IQR LALFFSGG+RQ+LKLKV
Sbjct: 241 KFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLXIQRKLALFFSGGERQQLKLKV 300

Query: 301 AGRIWKE 307
           AGRIWKE
Sbjct: 301 AGRIWKE 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076034|ref|XP_002304882.1| predicted protein [Populus trichocarpa] gi|222842314|gb|EEE79861.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/310 (77%), Positives = 272/310 (87%), Gaps = 3/310 (0%)

Query: 1   MAPGGGICKEVIESSIEFSDYEM---ATSSVELRGSPCRKATTGFSGNLGTTSNNDVHEL 57
           MAPGG I KE IES I + D++    ATS+ ELRGSP RKA T  +GN G  S +++ +L
Sbjct: 1   MAPGGIINKEEIESRIAYLDHDTGHPATSNAELRGSPFRKAATPSTGNPGKQSTSNMQDL 60

Query: 58  LECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELP 117
           L+CPVC  +MYPPI+QCPNGHTLCS C+ARV+  CP CR ELGNIRCLALEK+AES+ELP
Sbjct: 61  LDCPVCFTIMYPPIFQCPNGHTLCSHCRARVKNSCPICRGELGNIRCLALEKIAESIELP 120

Query: 118 CRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMH 177
           C+YQ  GC DIFPYYSK KHEKNC YRPYNCPYAGAECSVTGDIPLLV+HL+N+HKVDMH
Sbjct: 121 CKYQSMGCCDIFPYYSKPKHEKNCKYRPYNCPYAGAECSVTGDIPLLVKHLRNEHKVDMH 180

Query: 178 DGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEE 237
           DG TFNHRYVK++  EI+NATWMLTVFNCFGR FCLHFE FHLGM+PVYMAFLRFMG E+
Sbjct: 181 DGCTFNHRYVKSDPREIDNATWMLTVFNCFGRQFCLHFETFHLGMSPVYMAFLRFMGTED 240

Query: 238 EARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELK 297
           EAR+FSYSLEVGGNGRKLTWQG+PRSIRDSH++VRDSQDGLIIQRNLALFFSGG+RQELK
Sbjct: 241 EAREFSYSLEVGGNGRKLTWQGVPRSIRDSHQKVRDSQDGLIIQRNLALFFSGGERQELK 300

Query: 298 LKVAGRIWKE 307
           LKV+GRIWKE
Sbjct: 301 LKVSGRIWKE 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587731|ref|XP_002534375.1| Ubiquitin ligase SINAT2, putative [Ricinus communis] gi|223525415|gb|EEF28013.1| Ubiquitin ligase SINAT2, putative [Ricinus communis]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/307 (76%), Positives = 264/307 (85%), Gaps = 4/307 (1%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGG  CKEV+ES    SDYE+ T+  E   +     T G  G  G  SNN VHELLEC
Sbjct: 1   MAPGGSACKEVLESHPAISDYEIGTAKTENNST----VTKGLGGKQGLYSNNGVHELLEC 56

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC NLMYPPI+QCPNGHTLCS+CK+RV   CPTCR++LGNIRCLALEKVAESLELPC+Y
Sbjct: 57  PVCTNLMYPPIHQCPNGHTLCSNCKSRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKY 116

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           Q  GC DIFPYYSKLKHE++C +RPY+CPYAG+ECS+TGDIP LV HLK+DHKVDMHDG 
Sbjct: 117 QDLGCHDIFPYYSKLKHEQHCRFRPYSCPYAGSECSITGDIPTLVAHLKDDHKVDMHDGC 176

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF +GMAPVYMAFLRFMGD+ EA+
Sbjct: 177 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQIGMAPVYMAFLRFMGDDNEAK 236

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVGGNGRKL WQGIPRSIRDSH++VRDSQDGLIIQR+LAL+FSGGDRQELKL++
Sbjct: 237 KFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRI 296

Query: 301 AGRIWKE 307
            GRIWKE
Sbjct: 297 TGRIWKE 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230936|ref|NP_191363.1| E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana] gi|46577554|sp|Q9M2P4.1|SINA2_ARATH RecName: Full=E3 ubiquitin-protein ligase SINAT2; AltName: Full=Seven in absentia homolog 2 gi|6729547|emb|CAB67632.1| putative protein [Arabidopsis thaliana] gi|21593355|gb|AAM65304.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|105830184|gb|ABF74716.1| At3g58040 [Arabidopsis thaliana] gi|332646214|gb|AEE79735.1| E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/307 (76%), Positives = 263/307 (85%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGG   KEV+ES+    DYE+ T+ VE+  +   K  +   G  G  SNN V+ELLEC
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC NLMYPPI+QCPNGHTLCS+CK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCRY
Sbjct: 61  PVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 120

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           Q  GC DIFPYYSKLKHE++C +RPY CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG 
Sbjct: 121 QNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGC 180

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE EA+
Sbjct: 181 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAK 240

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVG +GRKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSGGDRQELKL+V
Sbjct: 241 KFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRV 300

Query: 301 AGRIWKE 307
            GRIWKE
Sbjct: 301 TGRIWKE 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441499|ref|XP_002280243.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 isoform 1 [Vitis vinifera] gi|4584257|emb|CAB40578.1| SINA2p [Vitis vinifera] gi|297739816|emb|CBI29998.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/307 (76%), Positives = 260/307 (84%), Gaps = 1/307 (0%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGG   KEV+ES    +DY++A +  +   +P  K T G SG  G +S N VHELLEC
Sbjct: 1   MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPA-KTTAGLSGKKGISSPNGVHELLEC 59

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC +LMYPPIYQCP+GHTLCS+CK+RV   CPTCRHELG+IRCLALEKVAESLELPCRY
Sbjct: 60  PVCTSLMYPPIYQCPSGHTLCSNCKSRVHNCCPTCRHELGDIRCLALEKVAESLELPCRY 119

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           Q  GC DIFPYYSKLKHE+ C + PYNCPYAG ECSVTGDIP LV HLK DHKVDMHDG 
Sbjct: 120 QSLGCHDIFPYYSKLKHEQQCRFHPYNCPYAGFECSVTGDIPTLVEHLKGDHKVDMHDGC 179

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFG+ FCLHFEAF LG APVYMAFLRFMGD+ EA+
Sbjct: 180 TFNHRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAK 239

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVGGN RKL WQG+PRSIRDSH++VRDSQDGLIIQRNLAL+FSGGDRQELKL+V
Sbjct: 240 KFSYSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRV 299

Query: 301 AGRIWKE 307
            GRIWKE
Sbjct: 300 TGRIWKE 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817142|ref|XP_002876454.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata] gi|297322292|gb|EFH52713.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/309 (76%), Positives = 265/309 (85%), Gaps = 3/309 (0%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGS--PCRKATTGFSGNLGTTSNNDVHELL 58
           MAPGG   KEV+ES+    DYE+ T+ VE+  +  P +  + G  G  G  SNN V+ELL
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNNKPTKPGSAGI-GKYGIHSNNGVYELL 59

Query: 59  ECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPC 118
           ECPVC NLMYPPI+QCPNGHTLCS+CK RV+  CPTCR+ELGNIRCLALEKVAESLE+PC
Sbjct: 60  ECPVCTNLMYPPIHQCPNGHTLCSNCKVRVQNTCPTCRYELGNIRCLALEKVAESLEVPC 119

Query: 119 RYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHD 178
           RYQ  GC DIFPYYSKLKHE++C +RPY CPYAG+EC+VTGDIP LV HLK+DHKVDMHD
Sbjct: 120 RYQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECAVTGDIPTLVVHLKDDHKVDMHD 179

Query: 179 GSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEE 238
           G TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE E
Sbjct: 180 GCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENE 239

Query: 239 ARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKL 298
           A++FSYSLEVG +GRKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSGGDRQELKL
Sbjct: 240 AKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKL 299

Query: 299 KVAGRIWKE 307
           +V GRIWKE
Sbjct: 300 RVTGRIWKE 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088178|ref|XP_002308357.1| predicted protein [Populus trichocarpa] gi|222854333|gb|EEE91880.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/307 (76%), Positives = 261/307 (85%), Gaps = 1/307 (0%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLEC 60
           MAPGG   KEV+E     +D ++A S  E   +P  K T    G  G  SNN VHELLEC
Sbjct: 1   MAPGGSAFKEVLEFHSTVADCDVANSKSENNITP-TKGTVVLGGKHGVYSNNGVHELLEC 59

Query: 61  PVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRY 120
           PVC NLMYPPI+QCPNGHTLCS+CK RV   CPTCR++LGNIRCLALEKVAESLELPC++
Sbjct: 60  PVCTNLMYPPIHQCPNGHTLCSNCKLRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKF 119

Query: 121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGS 180
           Q  GC DIFPYYSKLKHE++C +RPY+CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG 
Sbjct: 120 QSLGCLDIFPYYSKLKHEQHCRFRPYSCPYAGSECSVTGDIPALVSHLKDDHKVDMHDGC 179

Query: 181 TFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEAR 240
           TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGD+ EA+
Sbjct: 180 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAK 239

Query: 241 QFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKV 300
           +FSYSLEVGGNGRKL WQGIPRSIRDSH++VRDSQDGLIIQRNLAL+FSGGDRQELKL+V
Sbjct: 240 KFSYSLEVGGNGRKLVWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRV 299

Query: 301 AGRIWKE 307
            GR+WKE
Sbjct: 300 TGRVWKE 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806480|ref|NP_001240996.1| uncharacterized protein LOC100813966 [Glycine max] gi|255646961|gb|ACU23950.1| unknown [Glycine max]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 259/308 (84%), Gaps = 1/308 (0%)

Query: 1   MAPGGGICKEVIESSIEFSDYEMATSSVELRGS-PCRKATTGFSGNLGTTSNNDVHELLE 59
           MAPG  + KEV+ES +  SDYE   +  E + +    K++ G SG  G +SNN V+ELL 
Sbjct: 1   MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNITSTKSSVGLSGKSGISSNNGVYELLG 60

Query: 60  CPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCR 119
           CPVC NLMYPPI+QCPNGHTLCS CK  V   CP+C H+LGNIRCLALEKVAESLELPCR
Sbjct: 61  CPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCR 120

Query: 120 YQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDG 179
           YQ  GC DIFPYY+KLKHE+NC +RPYNCPYAG+ECSV GDIP LV HLK+DHKVDMHDG
Sbjct: 121 YQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDG 180

Query: 180 STFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEA 239
            TFNHRYVKAN  E+ENATWMLTVFN FGRHFCLHFEAF LG APVYMAFLRFMGD+ EA
Sbjct: 181 CTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEA 240

Query: 240 RQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLK 299
           ++FSYSLEVG NGRKL WQGIPRSIRDSH++VRDSQDGLIIQRNLAL+FSGG+RQELKL+
Sbjct: 241 KKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLR 300

Query: 300 VAGRIWKE 307
           + GRIW+E
Sbjct: 301 ITGRIWRE 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057140|ref|XP_002299139.1| predicted protein [Populus trichocarpa] gi|222846397|gb|EEE83944.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/285 (79%), Positives = 255/285 (89%)

Query: 23  MATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCS 82
           MATS+ ELRGS  RKA T  +GNLG  S +++ +LL+CPVC  +MYPPI+QCPNGHTLCS
Sbjct: 1   MATSAAELRGSHFRKAATPNTGNLGKQSTSNMQDLLDCPVCFTMMYPPIFQCPNGHTLCS 60

Query: 83  SCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCN 142
            C+ARV+  CP CR ELGNIRCLALEK+AES+ELPC YQ  GC DIFPYYSK KHE+NC 
Sbjct: 61  QCRARVKNSCPICRGELGNIRCLALEKIAESIELPCMYQSAGCGDIFPYYSKPKHEENCK 120

Query: 143 YRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLT 202
           YRPYNCPYAGAECSVTGDI LL++HLKNDHKVDMHDG TFNHRYVK++A EI+NATWMLT
Sbjct: 121 YRPYNCPYAGAECSVTGDISLLIKHLKNDHKVDMHDGCTFNHRYVKSDAGEIDNATWMLT 180

Query: 203 VFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 262
           VFNCFGR FCLHFE F +GM+PVYMAFLRFMG E+EAR+FSYS+EVGGNGRKLTWQG+PR
Sbjct: 181 VFNCFGRQFCLHFETFFIGMSPVYMAFLRFMGTEDEAREFSYSIEVGGNGRKLTWQGVPR 240

Query: 263 SIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE 307
           SIRDSH++VRDSQDGLIIQRNLALFFSGGDRQELKLKV+GRIWKE
Sbjct: 241 SIRDSHQKVRDSQDGLIIQRNLALFFSGGDRQELKLKVSGRIWKE 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2095848	308	SINAT2 "seven in absentia of A	0.996	0.993	0.769	1.8e-133
TAIR|locus:2064642	305	AT2G41980 [Arabidopsis thalian	0.986	0.993	0.75	1.9e-129
TAIR|locus:2076810	326	AT3G61790 [Arabidopsis thalian	0.856	0.806	0.781	3.3e-118
TAIR|locus:2137395	327	AT4G27880 [Arabidopsis thalian	0.967	0.908	0.684	4.9e-117
TAIR|locus:2091581	220	SINA2 "AT3G13672" [Arabidopsis	0.557	0.777	0.655	3.7e-66
UNIPROTKB|Q8I147	331	sina "E3 ubiquitin-protein lig	0.850	0.788	0.356	2e-45
MGI|MGI:108064	282	Siah1a "seven in absentia 1A"	0.785	0.854	0.382	6.4e-44
RGD|620449	282	Siah1a "seven in absentia 1A"	0.785	0.854	0.382	6.4e-44
UNIPROTKB|Q920M9	282	Siah1 "E3 ubiquitin-protein li	0.785	0.854	0.382	6.4e-44
MGI|MGI:108063	282	Siah1b "seven in absentia 1B"	0.781	0.851	0.377	8.1e-44

TAIR|locus:2095848 SINAT2 "seven in absentia of Arabidopsis 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 237/308 (76%), Positives = 265/308 (86%)

Query:     1 MAPGGGICKEVIESSIEFSDYEMATSSVELRGS-PCRKATTGFSGNLGTTSNNDVHELLE 59
             MAPGG   KEV+ES+    DYE+ T+ VE+  + P +  + G  G  G  SNN V+ELLE
Sbjct:     1 MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGI-GKYGIHSNNGVYELLE 59

Query:    60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCR 119
             CPVC NLMYPPI+QCPNGHTLCS+CK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCR
Sbjct:    60 CPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 119

Query:   120 YQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDG 179
             YQ  GC DIFPYYSKLKHE++C +RPY CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG
Sbjct:   120 YQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDG 179

Query:   180 STFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEA 239
              TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE EA
Sbjct:   180 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 239

Query:   240 RQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLK 299
             ++FSYSLEVG +GRKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSGGDRQELKL+
Sbjct:   240 KKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLR 299

Query:   300 VAGRIWKE 307
             V GRIWKE
Sbjct:   300 VTGRIWKE 307

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064642 AT2G41980 [Arabidopsis thaliana (taxid:3702)]

 Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
 Identities = 231/308 (75%), Positives = 261/308 (84%)

Query:     1 MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTT-SNNDVHELLE 59
             MAPGG   KE +ES+    DYE+  + VE    P +      SG++G   S+N V+ELLE
Sbjct:     1 MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSG----SGSIGKFHSSNGVYELLE 56

Query:    60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCR 119
             CPVC NLMYPPI+QCPNGHTLCSSCK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCR
Sbjct:    57 CPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 116

Query:   120 YQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDG 179
             YQ  GCQDIFPYYSKLKHE++C +R Y+CPYAG+ECSVTGDIP LV HLK+DHKVDMHDG
Sbjct:   117 YQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDG 176

Query:   180 STFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEA 239
              TFNHRYVK+N  E+ENATWMLTVFNCFGR FCLHFEAF LGMAPVYMAFLRFMGDE EA
Sbjct:   177 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 236

Query:   240 RQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLK 299
             ++FSYSLEVG + RKLTWQGIPRSIRDSH++VRDSQDGLII RNLAL+FSG D++ELKL+
Sbjct:   237 KKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLR 296

Query:   300 VAGRIWKE 307
             V GRIWKE
Sbjct:   297 VTGRIWKE 304

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2076810 AT3G61790 [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 207/265 (78%), Positives = 234/265 (88%)

Query:    43 SGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNI 102
             SG L TT++  VHELLECPVC N MYPPI+QC NGHTLCS+CKARV   CPTCR ELG+I
Sbjct:    48 SGLLPTTTS--VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDI 105

Query:   103 RCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIP 162
             RCLALEKVAESLELPC++   GC +IFPYYSKLKHE  CN+RPY+CPYAG+ECSVTGDIP
Sbjct:   106 RCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIP 165

Query:   163 LLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGM 222
              LV HL++DHKVDMH G TFNHRYVK+N  E+ENATWMLTVF+CFG++FCLHFEAF LGM
Sbjct:   166 FLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGM 225

Query:   223 APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQR 282
             APVYMAFLRFMGDE EAR ++YSLEVGG GRKL W+G PRS+RDSH++VRDS DGLIIQR
Sbjct:   226 APVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQR 285

Query:   283 NLALFFSGGDRQELKLKVAGRIWKE 307
             N+ALFFSGGDR+ELKL+V GRIWKE
Sbjct:   286 NMALFFSGGDRKELKLRVTGRIWKE 310

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2137395 AT4G27880 [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 204/298 (68%), Positives = 240/298 (80%)

Query:    10 EVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYP 69
             E+ ++      Y+ +++     G+      T   G   T     V+ELLECPVC   MYP
Sbjct:    15 EIHQNGNGHQSYQFSSTKTH-GGAAAAAVVTNIVGPTATAPATSVYELLECPVCTYSMYP 73

Query:    70 PIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIF 129
             PI+QC NGHTLCS+CK RV   CPTCR ELG+IRCLALEKVAESLELPC++   GC +IF
Sbjct:    74 PIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGCPEIF 133

Query:   130 PYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKA 189
             PYYSKLKHE  CN+RPY+CPYAG+EC + GDIP LV HL++DHKVDMH GSTFNHRYVK+
Sbjct:   134 PYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKS 193

Query:   190 NALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVG 249
             N  E+ENATWMLTVF+CFG++FCLHFEAF LGM PVYMAFLRFMGDEE+AR +SYSLEVG
Sbjct:   194 NPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVG 253

Query:   250 GNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAGRIWKE 307
             G+GRKLTW+G PRSIRDSH++VRDS DGLIIQRN+ALFFSGGDR+ELKL+V G+IWKE
Sbjct:   254 GSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKE 311

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2091581 SINA2 "AT3G13672" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 114/174 (65%), Positives = 140/174 (80%)

Query:   137 HEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIEN 196
             H +N   +PYNCP++GA+C VTGDI  L+ HL+NDH V+M DG +F+HRYV  +   + +
Sbjct:    42 HIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHH 101

Query:   197 ATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLT 256
             ATWMLT+ +C GR FCL+FEAFHL   P+YMAF++FMGDEEEA  FSYSL+VGGNGRKLT
Sbjct:   102 ATWMLTLLDCCGRKFCLYFEAFHLRKTPMYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLT 161

Query:   257 WQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDR---QELKLKVAGRIWKE 307
             WQG+PRSIRDSHK VRDSQDGLII R LALFFS  +    +ELKLKV+GR+W+E
Sbjct:   162 WQGVPRSIRDSHKTVRDSQDGLIITRKLALFFSTDNNTTDKELKLKVSGRVWRE 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

UNIPROTKB|Q8I147 sina "E3 ubiquitin-protein ligase sina" [Drosophila willistoni (taxid:7260)]

 Score = 454 (164.9 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 97/272 (35%), Positives = 146/272 (53%)

Query:    25 TSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC 84
             TSS     S     ++   G+ G ++  D+  L ECPVC + + PPI QC +GH +C SC
Sbjct:    57 TSSANTSSSSSSSLSSAGGGDAGMSA--DLTSLFECPVCFDYVLPPILQCSSGHLVCVSC 114

Query:    85 KARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYR 144
             ++++ T CPTCR  L NIR LA+EKVA +++ PC++  +GC     Y  K +HE+ C  R
Sbjct:   115 RSKL-TCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHEETCECR 173

Query:   145 PYNCPYAGAECSVTGDIPLLVRHLKNDHK-VDMHDGSTFNHRYVKANALEIENAT-WMLT 202
             PY CP  GA C   G + L+++HL   HK +    G         A  + +  A  W++ 
Sbjct:   174 PYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDI---VFLATDINLPGAVDWVM- 229

Query:   203 VFNCFGRHFCLHFEAFH-LGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIP 261
             + +CFG HF L  E          + A ++ +G  +EA  F Y LE+ GN R+LTW+ +P
Sbjct:   230 MQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMP 289

Query:   262 RSIRDSHKRVRDSQDGLIIQRNLA-LFFSGGD 292
             RSI +       + D L+   ++A LF   G+
Sbjct:   290 RSIHEGVASAIHNSDCLVFDTSIAQLFADNGN 321

GO:0005634 "nucleus" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0007423 "sensory organ development" evidence=ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0045676 "regulation of R7 cell differentiation" evidence=ISS

MGI|MGI:108064 Siah1a "seven in absentia 1A" [Mus musculus (taxid:10090)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 96/251 (38%), Positives = 143/251 (56%)

Query:    47 GTT-SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCL 105
             GTT SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR L
Sbjct:    27 GTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNL 85

Query:   106 ALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLV 165
             A+EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++
Sbjct:    86 AMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVM 145

Query:   166 RHLKNDHK-VDMHDGSTFNHRYVKANALEIENAT-WMLTVFNCFGRHFCLHFEAFH-LGM 222
              HL + HK +    G         A  + +  A  W++ + +CFG HF L  E       
Sbjct:   146 PHLMHQHKSITTLQGEDI---VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDG 201

Query:   223 APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQR 282
                + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   
Sbjct:   202 HQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDT 261

Query:   283 NLA-LFFSGGD 292
             ++A LF   G+
Sbjct:   262 SIAQLFAENGN 272

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO

GO:0031648 "protein destabilization" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO

RGD|620449 Siah1a "seven in absentia 1A" [Rattus norvegicus (taxid:10116)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 96/251 (38%), Positives = 143/251 (56%)

Query:    47 GTT-SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCL 105
             GTT SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR L
Sbjct:    27 GTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNL 85

Query:   106 ALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLV 165
             A+EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++
Sbjct:    86 AMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVM 145

Query:   166 RHLKNDHK-VDMHDGSTFNHRYVKANALEIENAT-WMLTVFNCFGRHFCLHFEAFH-LGM 222
              HL + HK +    G         A  + +  A  W++ + +CFG HF L  E       
Sbjct:   146 PHLMHQHKSITTLQGEDI---VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDG 201

Query:   223 APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQR 282
                + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   
Sbjct:   202 HQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDT 261

Query:   283 NLA-LFFSGGD 292
             ++A LF   G+
Sbjct:   262 SIAQLFAENGN 272

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;IPI

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0009791 "post-embryonic development" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO;ISS

GO:0031648 "protein destabilization" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0051402 "neuron apoptotic process" evidence=IMP

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q920M9 Siah1 "E3 ubiquitin-protein ligase SIAH1" [Rattus norvegicus (taxid:10116)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 96/251 (38%), Positives = 143/251 (56%)

Query:    47 GTT-SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCL 105
             GTT SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR L
Sbjct:    27 GTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNL 85

Query:   106 ALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLV 165
             A+EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++
Sbjct:    86 AMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVM 145

Query:   166 RHLKNDHK-VDMHDGSTFNHRYVKANALEIENAT-WMLTVFNCFGRHFCLHFEAFH-LGM 222
              HL + HK +    G         A  + +  A  W++ + +CFG HF L  E       
Sbjct:   146 PHLMHQHKSITTLQGEDI---VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDG 201

Query:   223 APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQR 282
                + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   
Sbjct:   202 HQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDT 261

Query:   283 NLA-LFFSGGD 292
             ++A LF   G+
Sbjct:   262 SIAQLFAENGN 272

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:108063 Siah1b "seven in absentia 1B" [Mus musculus (taxid:10090)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 94/249 (37%), Positives = 141/249 (56%)

Query:    48 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLAL 107
             T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+
Sbjct:    29 TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAV 87

Query:   108 EKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRH 167
             EKVA S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ H
Sbjct:    88 EKVANSVLFPCKYSASGCEITLPHTKKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPH 147

Query:   168 LKNDHK-VDMHDGSTFNHRYVKANALEIENAT-WMLTVFNCFGRHFCLHFEAFH-LGMAP 224
             L + HK +    G         A  + +  A  W++ + +CFG HF L  E         
Sbjct:   148 LMHQHKSITTLQGEDI---VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQ 203

Query:   225 VYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNL 284
              + A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++
Sbjct:   204 QFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSI 263

Query:   285 A-LFFSGGD 292
             A LF   G+
Sbjct:   264 AQLFAENGN 272

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93748	SINA1_ARATH	6, ., 3, ., 2, ., -	0.7532	0.9869	0.9934	no	no
P21461	SINA_DROME	6, ., 3, ., 2, ., -	0.3461	0.8208	0.8025	yes	no
Q84JL3	SINA3_ARATH	6, ., 3, ., 2, ., -	0.7811	0.8566	0.8067	no	no
Q8S3N1	SINA5_ARATH	6, ., 3, ., 2, ., -	0.7617	0.8338	0.8284	no	no
Q9M2P4	SINA2_ARATH	6, ., 3, ., 2, ., -	0.7687	1.0	0.9967	yes	no
Q9STN8	SINA4_ARATH	6, ., 3, ., 2, ., -	0.75	0.8729	0.8195	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	1e-88
cd03829	127	cd03829, Sina, Seven in absentia (Sina) protein fa	6e-61
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-05

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score =  263 bits (673), Expect = 1e-88
 Identities = 88/199 (44%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 102 IRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDI 161
           IR LA+EKVA  +  PC++   GC    P   K  HE+ C Y+PY CP  GA+C   GD 
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 162 PLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLG 221
             L+ HL  DHKV   +G  F+  Y+ A    +   TW++  F+CFGRHF L+ E + LG
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDLG 120

Query: 222 MAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQ 281
              +Y A ++ +G+ +EA  F+Y LE+GGN RKLTWQ  PRSIRD HK   D +D LI  
Sbjct: 121 GTQMYFAVIQLIGERKEAENFAYELELGGNRRKLTWQAFPRSIRDDHKFAIDGRDCLIFL 180

Query: 282 RNLALFFSGGDRQELKLKV 300
           RN A FF+      L  +V
Sbjct: 181 RNAARFFAEDKN--LHYRV 197

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

 Score =  189 bits (482), Expect = 6e-61
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 174 VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHL-GMAPVYMAFLRF 232
           V    G   +  ++  + + +  AT  + + +CFG HF L  E   L      + AF++ 
Sbjct: 1   VTTLQGE--DIVFLATD-INLPGATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQL 57

Query: 233 MGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGD 292
           +G E++A  F+Y LE+ GN R+LTW+  PRSIR+ H  V D+ D L+   ++A  FS   
Sbjct: 58  IGTEKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENG 117

Query: 293 RQELKLKVAG 302
              + + ++G
Sbjct: 118 NLGINVTISG 127

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-mediated degradation resulting in the downregulation of auxin, a hormone that controls many aspects of plant development. Other targets of Sina family proteins include c-Myb, synaptophysin, group 1 glutamate receptors, promyelocytic leukemia protein, alpha-synuclein, synphilin-1 and alpha-ketoglutarate dehydrogenase, among others. Sina proteins also bind proteins that are not targets for ubiquitination such as Phyl, adenomatous polyposis coli, VAV, BAG-1 and Dab-1. Siah binds to a consensus motif, PXAXVXP, which is present in Siah-binding proteins. Siah is a dimeric protein consisting of an N-terminal RING domain, two zinc finger motifs and a C-terminal substrate-binding domain (SBD); this SBD contains an eight-stranded antiparallel beta-sandwich fold similar to the MATH (meprin and TRAF-C homology) domain. Length = 127

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTG---CPTCRH 97
          E LECP+CL+L+  P+   P GH  C  C  R       CP CR 
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG3002	299	consensus Zn finger protein [General function pred	100.0
PF03145	198	Sina: Seven in absentia protein family; InterPro:	100.0
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	100.0
KOG0297	391	consensus TNF receptor-associated factor [Signal t	99.29
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.7
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.62
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.62
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.59
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.59
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.55
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.52
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.51
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.37
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.36
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.27
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.2
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.17
PF14634	44	zf-RING_5: zinc-RING finger domain	98.11
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.11
PHA02929	238	N1R/p28-like protein; Provisional	98.05
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.05
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.03
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.81
PHA02926	242	zinc finger-like protein; Provisional	97.76
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.73
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.6
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.52
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.45
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.29
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.25
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	97.03
PLN03086	567	PRLI-interacting factor K; Provisional	96.98
COG5152	259	Uncharacterized conserved protein, contains RING a	96.69
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.69
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.68
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.64
PLN03086	567	PRLI-interacting factor K; Provisional	96.44
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.1
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.08
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.86
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	95.83
KOG2660	331	consensus Locus-specific chromosome binding protei	95.76
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	95.6
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.41
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.26
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.12
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	95.0
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.53
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.38
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	94.37
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	94.35
KOG4739	233	consensus Uncharacterized protein involved in syna	94.3
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	94.08
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	93.63
KOG4367	699	consensus Predicted Zn-finger protein [Function un	93.19
KOG1002	791	consensus Nucleotide excision repair protein RAD16	92.69
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.2
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	91.36
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	91.2
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.93
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	90.0
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	89.98
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	89.9
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.51
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.76
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	88.71
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.56
PF04641	260	Rtf2: Rtf2 RING-finger	87.53
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	87.41
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	86.99
KOG3039	303	consensus Uncharacterized conserved protein [Funct	86.92
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	86.71
KOG0825	1134	consensus PHD Zn-finger protein [General function	86.56
COG5219	1525	Uncharacterized conserved protein, contains RING Z	85.93
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	85.78
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	85.57
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	85.48
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	84.76
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	83.94
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	82.72
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	82.37

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=100.00  E-value=5.1e-53  Score=386.58  Aligned_cols=257  Identities=46%  Similarity=0.823  Sum_probs=242.1

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCcccchhHHHHhhccccccccccCCcceee
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIF  129 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~  129 (307)
                      ......++|+||||++.+.+||+||.+||+.|++|..++.+.||.|+.+++++|+++||++++++.++|+|+.+||++++
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            55667899999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCcccCceeEEEEeecccccccccceEEEEEeecCc
Q 021796          130 PYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGR  209 (307)
Q Consensus       130 ~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  209 (307)
                      +|.+...||+.|.|+|+.||.+|..|+|+|.+++|..|++..|+.++..+..+++.|..+++..++..+|++.+..++++
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGR  200 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcE
Confidence            99999999999999999999999999999999999999999999888777778889999999888899998777779999


Q ss_pred             eEEEEEeeeeeCCc-cEEEEEEEEeCChhhccCcEEEEEEecCCceEEEeeecceeeccccccccCCCeeEEcCccccee
Q 021796          210 HFCLHFEAFHLGMA-PVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFF  288 (307)
Q Consensus       210 ~F~l~~~~~~~~~~-~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~~si~~~~~~~~~~~d~l~i~~~~~~~~  288 (307)
                      .|++.+..+..+.. ++|+++++++|.+++|++|+|+|++.+++++|+|++.|+++++.+...++..|||+||.+++++|
T Consensus       201 ~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~  280 (299)
T KOG3002|consen  201 EFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLF  280 (299)
T ss_pred             EEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcc
Confidence            99999998887554 89999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             cCCCeEEEEEEEEEEeccC
Q 021796          289 SGGDRQELKLKVAGRIWKE  307 (307)
Q Consensus       289 ~~~~~~~l~~~i~~~~~~~  307 (307)
                      +.++ ++|.|..++++|.+
T Consensus       281 ~~~~-~~l~i~~~~~~~~~  298 (299)
T KOG3002|consen  281 SLLK-MELKIRVTGRVQEE  298 (299)
T ss_pred             cccC-Cceeeccchhhhcc
Confidence            8776 48999999999975

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=100.00  E-value=9.4e-44  Score=311.63  Aligned_cols=198  Identities=41%  Similarity=0.817  Sum_probs=152.7

Q ss_pred             ccchhHHHHhhccccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCcccCce
Q 021796          102 IRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGST  181 (307)
Q Consensus       102 ~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~~~g~~  181 (307)
                      +||++||++++++++||+|+.+||++.++|.++.+||++|+|+|+.||.++.+|+|+|+.++|..|+..+|.+.+..+..
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            48999999999999999999999999999999999999999999999997778999999999999999999998876667


Q ss_pred             eEEEEeecccccccccceEEEEEeecCceEEEEEeeeeeCCccEEEEEEEEeCChhhccCcEEEEEEecCCceEEEeeec
Q 021796          182 FNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLGMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIP  261 (307)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~F~l~~~~~~~~~~~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~  261 (307)
                      +.++|..+++...+...|+++.++|||++|+|+++.+......+|+++++++|++++|.+|+|+|++.+++|+|+||++|
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p  160 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP  160 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence            77889888777667788987666999999999998887656689999999999999999999999999999999999999


Q ss_pred             ceeeccccccccCCCeeEEcCcccceecCCCeEEEEEE
Q 021796          262 RSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLK  299 (307)
Q Consensus       262 ~si~~~~~~~~~~~d~l~i~~~~~~~~~~~~~~~l~~~  299 (307)
                      +|++++.+.++++.|||++..+++++|+++++|.|+|+
T Consensus       161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~  198 (198)
T PF03145_consen  161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT  198 (198)
T ss_dssp             EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred             cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence            99999999999999999999999999999998666654

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=100.00  E-value=6.8e-39  Score=250.76  Aligned_cols=125  Identities=32%  Similarity=0.607  Sum_probs=118.3

Q ss_pred             CcccCceeEEEEeecccccccccceEEEEEeecCceEEEEEeeeee-CCccEEEEEEEEeCChhhccCcEEEEEEecCCc
Q 021796          175 DMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHL-GMAPVYMAFLRFMGDEEEARQFSYSLEVGGNGR  253 (307)
Q Consensus       175 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~F~l~~~~~~~-~~~~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r  253 (307)
                      ++++|+  +++|+++|+++++ +.|++++++|||++|+|+++++++ +.+++|+|++|+||+..+|.+|+|+||+.+|+|
T Consensus         2 ~~~~G~--di~fl~t~~~~~~-a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~R   78 (127)
T cd03829           2 TTLQGE--DIVFLATDINLPG-ATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRR   78 (127)
T ss_pred             ccccCc--cEEEEecCCCCcc-ceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCc
Confidence            467788  6689999999888 566677999999999999999999 778999999999999999999999999999999


Q ss_pred             eEEEeeecceeeccccccccCCCeeEEcCcccceecCCCeEEEEEEEEE
Q 021796          254 KLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG  302 (307)
Q Consensus       254 ~l~~~s~~~si~~~~~~~~~~~d~l~i~~~~~~~~~~~~~~~l~~~i~~  302 (307)
                      ||+||++||||||++.+++++.|||+|++++|+||++||+++|+|+|||
T Consensus        79 kL~we~~PRSIrds~~~~~~~~D~Lii~~~~A~~Fs~~g~l~l~v~It~  127 (127)
T cd03829          79 RLTWEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENGNLGINVTISG  127 (127)
T ss_pred             EEEeecCCccHHHhhHHHhhcCcceEEechHhhhccCCCccEEEEEecC
Confidence            9999999999999999999999999999999999999999999999986

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=99.29  E-value=4.2e-12  Score=121.95  Aligned_cols=118  Identities=27%  Similarity=0.572  Sum_probs=104.0

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCcc----cchhHHHHhhccccccccccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGNI----RCLALEKVAESLELPCRYQIWGC  125 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~~----~~~~le~~~~~l~~~C~n~~~GC  125 (307)
                      .+..++.||+|..++.+|+..-.|||.||..|+..+.   ..||.|+..+...    ....+.+.+.++.+.|.++..||
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC   96 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGC   96 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCc
Confidence            3788899999999999997634899999999998874   6899998887652    24677888999999999999999


Q ss_pred             ceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCC
Q 021796          126 QDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVD  175 (307)
Q Consensus       126 ~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~  175 (307)
                      .|.+....+..|+..|  .+..||+.   |+..+.+.++.+|++.++...
T Consensus        97 ~~~~~l~~~~~Hl~~c--~~~~C~~~---C~~~~~~~d~~~hl~~~C~~~  141 (391)
T KOG0297|consen   97 RADLELEALQGHLSTC--DPLKCPHR---CGVQVPRDDLEDHLEAECPRR  141 (391)
T ss_pred             cccccHHHHHhHhccC--CcccCccc---cccccchHHHHHHHhcccccc
Confidence            9999999999999999  99999983   999999999999998877643

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.70  E-value=2.9e-09  Score=97.41  Aligned_cols=72  Identities=26%  Similarity=0.557  Sum_probs=59.1

Q ss_pred             CCCCCCCCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           43 SGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        43 ~~~~~~~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      .....+++...++++|.|-||+++|+.|+.+ +|||.||+-|+.+..   ..||.|+.++..   ..|+.++.+++++.
T Consensus         9 w~~tsipslk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen    9 WPPTSIPSLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLN   86 (442)
T ss_pred             CCCccCchhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence            3445567888999999999999999999998 899999999998874   889999998876   34566666666543

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.62  E-value=1.9e-08  Score=65.86  Aligned_cols=35  Identities=46%  Similarity=1.220  Sum_probs=27.2

Q ss_pred             eccccCCCCCCeeecCCCceechhchhhhc-------CCCCCC
Q 021796           60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVR-------TGCPTC   95 (307)
Q Consensus        60 CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-------~~CP~C   95 (307)
                      ||||++++++|+.. +|||+||..|+.++.       ..||.|
T Consensus         1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999988 999999999998873       357765

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.62  E-value=2e-08  Score=95.90  Aligned_cols=67  Identities=27%  Similarity=0.529  Sum_probs=55.1

Q ss_pred             CCCCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhcc
Q 021796           47 GTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESL  114 (307)
Q Consensus        47 ~~~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l  114 (307)
                      ..+....+...+.|+||.+++..|+.+ +|||.||..|+..+.   ..||.|+..+..   .+|..++++++.+
T Consensus        16 ~~~~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~   88 (397)
T TIGR00599        16 PIPSLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESF   88 (397)
T ss_pred             CcccccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHH
Confidence            445567889999999999999999877 999999999998763   579999998765   4677777776654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.59  E-value=9.7e-09  Score=72.26  Aligned_cols=59  Identities=25%  Similarity=0.582  Sum_probs=31.4

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhh-cCCCCCCcccCCc---ccchhHHHHh
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHELGN---IRCLALEKVA  111 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~-~~~CP~Cr~~~~~---~~~~~le~~~  111 (307)
                      .+++.+.|++|.++|+.|+..-.|.|+||+.|+... ...||+|..|.-.   ..|+.++.++
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence            346788999999999999765489999999999875 3679999998643   4566666553

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.59  E-value=3.6e-08  Score=84.85  Aligned_cols=48  Identities=25%  Similarity=0.728  Sum_probs=41.0

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-------------------CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-------------------TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-------------------~~CP~Cr~~~~~  101 (307)
                      +..+.++||||++.+++|+.+ .|||+||..|+.+|.                   ..||.|+.+++.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            345578999999999999887 899999999998762                   479999998864

>smart00504 Ubox Modified RING finger domain

Probab=98.55  E-value=7.9e-08  Score=68.20  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=46.0

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhh
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAE  112 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~  112 (307)
                      .+.||||++++.+|+.. +|||+||..|+.++.   ..||.|+.+++.   .++..+.+.++
T Consensus         1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~   61 (63)
T smart00504        1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQ   61 (63)
T ss_pred             CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHH
Confidence            36899999999999887 899999999999873   689999999864   56777766654

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=5.9e-08  Score=81.67  Aligned_cols=46  Identities=33%  Similarity=0.868  Sum_probs=37.8

Q ss_pred             CCeeeeccccCCCCC--CeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYP--PIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~--Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ...+.||||++.+..  |+-+ .|||+||+.|+....   ..||+|++.++.
T Consensus       129 ~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             ccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            456999999999854  4445 899999999998763   899999987764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=9.7e-08  Score=83.72  Aligned_cols=48  Identities=27%  Similarity=0.690  Sum_probs=42.9

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~  101 (307)
                      .....|+|.||++..++||++ .|||+||..|+.+|.      ..||+|+..++.
T Consensus        43 ~~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            346789999999999999999 699999999999994      679999998775

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.37  E-value=2.1e-07  Score=63.16  Aligned_cols=43  Identities=33%  Similarity=0.837  Sum_probs=37.1

Q ss_pred             eeeeccccCCCCCCeeecCCCce-echhchhhhc---CCCCCCcccCC
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      +..|+||++...++++. +|||. ||..|..++.   ..||.||+++.
T Consensus         2 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLL-PCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEe-CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            46899999999999888 99999 9999999883   89999999875

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.36  E-value=2.5e-07  Score=59.49  Aligned_cols=36  Identities=36%  Similarity=1.083  Sum_probs=29.1

Q ss_pred             eccccCCCCCCeeecCCCceechhchhhhc---CCCCCC
Q 021796           60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTC   95 (307)
Q Consensus        60 CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~C   95 (307)
                      ||||.+.+.+|+..-+|||+||..|+.++.   ..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            899999999996555999999999998873   678876

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.27  E-value=3.3e-07  Score=82.50  Aligned_cols=57  Identities=28%  Similarity=0.545  Sum_probs=49.7

Q ss_pred             CCCCCCCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           44 GNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        44 ~~~~~~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ....++++..+...+.|.||.+.++.|+.+ +|||.||+-||.+..   ..||.||.+...
T Consensus        12 ~~T~IPSL~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          12 NQTKIPSLKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             ccccCcchhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            345667888999999999999999999888 999999999998874   789999997643

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.20  E-value=1.4e-06  Score=64.08  Aligned_cols=59  Identities=31%  Similarity=0.401  Sum_probs=45.3

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhcc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESL  114 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l  114 (307)
                      .+.|.|||++++|.+||.. ++||+|+..++.++.    ..||.|+.++..   .+|.+|.+.++.+
T Consensus         2 P~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            4678999999999999988 899999999999885    559999999876   5788888777654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.17  E-value=9.2e-07  Score=62.17  Aligned_cols=55  Identities=25%  Similarity=0.476  Sum_probs=39.8

Q ss_pred             hhccccccccccCCcceeecccchHHHHH-hCCCcCccCCCCCCCCccccChhhHHHH
Q 021796          111 AESLELPCRYQIWGCQDIFPYYSKLKHEK-NCNYRPYNCPYAGAECSVTGDIPLLVRH  167 (307)
Q Consensus       111 ~~~l~~~C~n~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~g~~C~~~g~~~~l~~H  167 (307)
                      .....++|+|  .||...++..++.+|.+ +|+++++.||+...+|++.+.+.+|..|
T Consensus         5 C~~~~v~C~~--~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    5 CPFRPVPCPN--GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             STTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCCCEeeCCC--CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            4556799997  46788899999999988 9999999999976779999999999887

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.11  E-value=1.3e-06  Score=57.73  Aligned_cols=38  Identities=29%  Similarity=0.907  Sum_probs=31.6

Q ss_pred             eeccccCCC---CCCeeecCCCceechhchhhhc---CCCCCCcc
Q 021796           59 ECPVCLNLM---YPPIYQCPNGHTLCSSCKARVR---TGCPTCRH   97 (307)
Q Consensus        59 ~CpiC~~~l---~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~   97 (307)
                      +|++|++.+   ..|+++ +|||+||..|+.+..   ..||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            589999999   345555 899999999999875   68999974

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.11  E-value=1.3e-06  Score=57.56  Aligned_cols=38  Identities=37%  Similarity=0.886  Sum_probs=31.0

Q ss_pred             eeccccCCCC--CCeeecCCCceechhchhhhc---CCCCCCc
Q 021796           59 ECPVCLNLMY--PPIYQCPNGHTLCSSCKARVR---TGCPTCR   96 (307)
Q Consensus        59 ~CpiC~~~l~--~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr   96 (307)
                      +|+||++.+.  ..+...+|||.||..|+.+|.   ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            6999999994  445555899999999999884   8899996

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.05  E-value=2e-06  Score=77.07  Aligned_cols=47  Identities=26%  Similarity=0.646  Sum_probs=37.8

Q ss_pred             CCeeeeccccCCCCCC-e------eecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPP-I------YQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~P-i------~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+..+|+||++.+..+ +      ...+|||.||..|+.+|.   ..||.||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            4467999999987653 1      233799999999999884   789999998775

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.9e-06  Score=77.85  Aligned_cols=47  Identities=30%  Similarity=0.653  Sum_probs=41.2

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+....|.+|++....|--+ +|||+||.+|+..|.   ..||.||..+..
T Consensus       236 ~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            46678999999999999766 899999999999983   779999998764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=2.8e-06  Score=54.97  Aligned_cols=36  Identities=36%  Similarity=1.017  Sum_probs=30.2

Q ss_pred             eccccCCCCCCeeecCCCceechhchhhhc-----CCCCCC
Q 021796           60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPTC   95 (307)
Q Consensus        60 CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~C   95 (307)
                      |+||.+.+..|+..-+|||.||..|+.++.     ..||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999998444999999999998873     567766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.81  E-value=1.3e-05  Score=51.97  Aligned_cols=41  Identities=39%  Similarity=0.987  Sum_probs=33.5

Q ss_pred             eeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccC
Q 021796           59 ECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHEL   99 (307)
Q Consensus        59 ~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~   99 (307)
                      .|+||.+.+..++..-.|||.||..|+.++.    ..||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999997776664599999999998663    5799998753

>PHA02926 zinc finger-like protein; Provisional

Probab=97.76  E-value=8.1e-06  Score=71.38  Aligned_cols=48  Identities=27%  Similarity=0.724  Sum_probs=37.6

Q ss_pred             CCCCeeeeccccCCCCC---------CeeecCCCceechhchhhhc---------CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYP---------PIYQCPNGHTLCSSCKARVR---------TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~---------Pi~~C~cGH~~C~~C~~~~~---------~~CP~Cr~~~~~  101 (307)
                      ...++.+|+||++....         ++.. +|+|.||..|+.+|.         ..||.||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~-~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLD-SCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccC-CCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            34557899999998643         3444 799999999999985         239999998765

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1e-05  Score=78.45  Aligned_cols=44  Identities=30%  Similarity=0.782  Sum_probs=38.9

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhc--------CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR--------TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~  101 (307)
                      ...||||+++..-|+.+ .|||+||..|+.+..        ..||.|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            78999999999999888 799999999988752        789999998765

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.73  E-value=1.3e-05  Score=52.55  Aligned_cols=28  Identities=32%  Similarity=1.019  Sum_probs=18.7

Q ss_pred             eccccCCCCC----CeeecCCCceechhchhhhc
Q 021796           60 CPVCLNLMYP----PIYQCPNGHTLCSSCKARVR   89 (307)
Q Consensus        60 CpiC~~~l~~----Pi~~C~cGH~~C~~C~~~~~   89 (307)
                      ||||.+ +..    |+.. +|||+||..|+.++.
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~   32 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLS   32 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHH
Confidence            899999 777    8888 799999999998873

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=1.6e-05  Score=71.04  Aligned_cols=46  Identities=30%  Similarity=0.555  Sum_probs=39.6

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhh-hc----CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKAR-VR----TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~-~~----~~CP~Cr~~~~~  101 (307)
                      ..++.|++|.+....|..+ +|||+||..|+.. |.    ..||.||.....
T Consensus       213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            6789999999999999887 9999999999887 42    569999986543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3.3e-05  Score=70.21  Aligned_cols=68  Identities=31%  Similarity=0.639  Sum_probs=51.7

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc-ccchhHHHHhhccccccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN-IRCLALEKVAESLELPCR  119 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~-~~~~~le~~~~~l~~~C~  119 (307)
                      ...+.+.+.||||++.+..|... +|||.||..|+..+.   ..||.||..... .+|..+.+++..+.....
T Consensus         7 ~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    7 LEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             hhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcCC
Confidence            34567899999999999999655 799999999999875   789999952111 356777777776654443

>smart00184 RING Ring finger

Probab=97.52  E-value=5.5e-05  Score=47.14  Aligned_cols=35  Identities=43%  Similarity=1.106  Sum_probs=29.6

Q ss_pred             eccccCCCCCCeeecCCCceechhchhhhc----CCCCCC
Q 021796           60 CPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTC   95 (307)
Q Consensus        60 CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~C   95 (307)
                      |+||++....++.. +|||.||..|+.++.    ..||.|
T Consensus         1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEe-cCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999998888777 899999999998762    568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=7.2e-06  Score=76.00  Aligned_cols=65  Identities=23%  Similarity=0.477  Sum_probs=50.6

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCccc----chhHHHHhhcc
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGNIR----CLALEKVAESL  114 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~~~----~~~le~~~~~l  114 (307)
                      .+..+...+.||||+++++..+.+-.|+|.||..|+.+..    +.||+||+.+...|    +.....++..+
T Consensus        36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            3566788999999999999887776799999999998763    88999999887633    33445555443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=5.6e-05  Score=76.60  Aligned_cols=51  Identities=27%  Similarity=0.662  Sum_probs=43.6

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCcc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGNI  102 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~~  102 (307)
                      +......|.||+|..-.++-|.. .|||.||..|+.+.    ..+||.|..+|+..
T Consensus       637 lk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  637 LKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             HHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            34567899999999888888877 89999999999876    38999999998863

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.25  E-value=0.00024  Score=65.70  Aligned_cols=45  Identities=33%  Similarity=0.686  Sum_probs=33.6

Q ss_pred             eeeeccccC--CCCCCe--eecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           57 LLECPVCLN--LMYPPI--YQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~--~l~~Pi--~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      ...||+|..  ++.+-+  +.-.|||.||.+|+..+.    ..||.|+.++..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            357999999  444331  332699999999999862    679999987654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=97.03  E-value=0.0012  Score=54.98  Aligned_cols=29  Identities=24%  Similarity=0.582  Sum_probs=24.0

Q ss_pred             cCccCCCCCCCCccccChhhHHHHhhccCCC
Q 021796          144 RPYNCPYAGAECSVTGDIPLLVRHLKNDHKV  174 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~  174 (307)
                      .+-.|+..  .|.|.|.+.+|.+|.+..|..
T Consensus       106 K~RsC~~e--~C~F~GtY~eLrKHar~~HP~  134 (162)
T PF07800_consen  106 KKRSCSQE--SCSFSGTYSELRKHARSEHPS  134 (162)
T ss_pred             CCccCccc--ccccccCHHHHHHHHHhhCCC
Confidence            34456663  599999999999999999984

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.98  E-value=0.00045  Score=69.00  Aligned_cols=110  Identities=17%  Similarity=0.377  Sum_probs=69.5

Q ss_pred             cCCCCeeeeccccCCCCCCee-----ecCCCceechh--chhhh-------cCCCCCCcccCCcccchhHHHHhhccccc
Q 021796           52 NDVHELLECPVCLNLMYPPIY-----QCPNGHTLCSS--CKARV-------RTGCPTCRHELGNIRCLALEKVAESLELP  117 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~-----~C~cGH~~C~~--C~~~~-------~~~CP~Cr~~~~~~~~~~le~~~~~l~~~  117 (307)
                      +...+...|+.|......--+     .|...-+.|..  |....       +..|+.|...+....-..+.+.. ...+.
T Consensus       402 s~~~~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~-Hkpv~  480 (567)
T PLN03086        402 SMDVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVF-HEPLQ  480 (567)
T ss_pred             cCCCCeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhc-CCCcc
Confidence            344667789999887643211     24333344432  43222       25799998877542222333333 46778


Q ss_pred             cccccCCcceeecccchHHHHH-hCCCcCccCCCCCCCCccccC-----------hhhHHHHhhcc
Q 021796          118 CRYQIWGCQDIFPYYSKLKHEK-NCNYRPYNCPYAGAECSVTGD-----------IPLLVRHLKND  171 (307)
Q Consensus       118 C~n~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~g~~C~~~g~-----------~~~l~~Hl~~~  171 (307)
                      |+     |...+...++..|.. .|+.+++.|++    |+....           ...|..|....
T Consensus       481 Cp-----Cg~~~~R~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        481 CP-----CGVVLEKEQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             CC-----CCCCcchhHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhc
Confidence            87     777778888889965 79999999998    665553           34788887763

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.69  E-value=0.0008  Score=57.86  Aligned_cols=58  Identities=22%  Similarity=0.450  Sum_probs=42.8

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhh---cCCCCCCcccCCc--ccchhHHHHhhc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---RTGCPTCRHELGN--IRCLALEKVAES  113 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---~~~CP~Cr~~~~~--~~~~~le~~~~~  113 (307)
                      .-.|.|-||.+-+..||.+ .|||.||+.|..+-   ...|-.|.+..-.  .....+++++.+
T Consensus       194 ~IPF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~  256 (259)
T COG5152         194 KIPFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK  256 (259)
T ss_pred             CCceeehhchhhccchhhh-hcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence            3457899999999999988 99999999997654   2678888775322  233445666543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0019  Score=58.25  Aligned_cols=46  Identities=33%  Similarity=0.579  Sum_probs=37.4

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc-----CCCCCCcccCC
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPTCRHELG  100 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~Cr~~~~  100 (307)
                      ....+||+|.+....|...-.|||++|..|+..-.     ..||.|..+.-
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            55679999999999996553599999999998653     48999987643

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.68  E-value=0.0013  Score=48.16  Aligned_cols=38  Identities=32%  Similarity=0.746  Sum_probs=29.5

Q ss_pred             eeccccCCCCCC------------eeecCCCceechhchhhhc---CCCCCCc
Q 021796           59 ECPVCLNLMYPP------------IYQCPNGHTLCSSCKARVR---TGCPTCR   96 (307)
Q Consensus        59 ~CpiC~~~l~~P------------i~~C~cGH~~C~~C~~~~~---~~CP~Cr   96 (307)
                      .|.||++.+.+|            +..-.|||.|-..|+.+|.   ..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            399999999443            2322699999999999884   7899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00091  Score=64.33  Aligned_cols=48  Identities=42%  Similarity=0.978  Sum_probs=42.3

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+.+.|.|.||...+.+|+.+ +|||.+|..|+.+..   ..||.||.++..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccCCCCccccccccc
Confidence            448899999999999999998 999999999977753   789999998764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.44  E-value=0.0056  Score=61.34  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=18.8

Q ss_pred             chHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCC
Q 021796          133 SKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHK  173 (307)
Q Consensus       133 ~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~  173 (307)
                      .+..|+..|.-+++.|..    |+......+|..|+..-|.
T Consensus       529 ~Lt~HE~~CG~rt~~C~~----Cgk~Vrlrdm~~H~~~~h~  565 (567)
T PLN03086        529 GMSEHESICGSRTAPCDS----CGRSVMLKEMDIHQIAVHQ  565 (567)
T ss_pred             hHHHHHHhcCCcceEccc----cCCeeeehhHHHHHHHhhc
Confidence            445555555555555532    4444455555555555443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.10  E-value=0.0032  Score=42.09  Aligned_cols=40  Identities=30%  Similarity=0.850  Sum_probs=20.7

Q ss_pred             eccccCCCCC---CeeecCCCceechhchhhhc----CCCCCCcccC
Q 021796           60 CPVCLNLMYP---PIYQCPNGHTLCSSCKARVR----TGCPTCRHEL   99 (307)
Q Consensus        60 CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~   99 (307)
                      ||+|.+.+..   -++-|+||..+|..|..++.    ..||.||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7888888721   24569999999999987764    7899999874

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.0036  Score=57.10  Aligned_cols=49  Identities=20%  Similarity=0.528  Sum_probs=40.2

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCcccc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGNIRC  104 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~~~~  104 (307)
                      .--+.|-||.+++..||.+ .|||.||..|..+..   ..|.+|.+.+-..-|
T Consensus       239 ~~Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  239 LLPFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             cCCccccccccccccchhh-cCCceeehhhhccccccCCcceecccccccccc
Confidence            4456799999999999988 999999999977653   679999987655434

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.86  E-value=0.0039  Score=56.87  Aligned_cols=40  Identities=35%  Similarity=0.859  Sum_probs=35.4

Q ss_pred             eeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcc
Q 021796           58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRH   97 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~   97 (307)
                      |.||.|..+++.|+.+-.|||.||..|+...+    ..||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            89999999999998884599999999998653    88999976

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=95.83  E-value=0.0058  Score=45.88  Aligned_cols=42  Identities=24%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             eeccccCCCCC-CeeecCCCceechhchhhhc------CCCCCCcccCC
Q 021796           59 ECPVCLNLMYP-PIYQCPNGHTLCSSCKARVR------TGCPTCRHELG  100 (307)
Q Consensus        59 ~CpiC~~~l~~-Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~  100 (307)
                      .||.|..+-.+ |+....|+|.|-..|+.++.      ..||.||++..
T Consensus        34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            46667666543 66677899999999999883      78999999764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.76  E-value=0.0024  Score=59.06  Aligned_cols=50  Identities=22%  Similarity=0.512  Sum_probs=41.8

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .++.....|++|..+|.++...-.|=|+||.+|+.+..   +.||.|...+..
T Consensus        10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            45567889999999999996555799999999998763   899999887654

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=95.60  E-value=0.0065  Score=42.31  Aligned_cols=38  Identities=32%  Similarity=0.571  Sum_probs=29.8

Q ss_pred             HHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCc
Q 021796          137 HEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDM  176 (307)
Q Consensus       137 He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~  176 (307)
                      |+++|+++++.||+.+  |.-...+.+|.+|+........
T Consensus         1 H~~~C~~~~v~C~~~c--c~~~i~r~~l~~H~~~~C~~~~   38 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGC--CNEMIPRKELDDHLENECPKRP   38 (60)
T ss_dssp             HHTTSTTSEEE-TT----S-BEEECCCHHHHHHTTSTTSE
T ss_pred             CcccCCCCEeeCCCCC--cccceeHHHHHHHHHccCCCCc
Confidence            8889999999999843  6666889999999998887653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.41  E-value=0.0092  Score=41.55  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR   89 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~   89 (307)
                      ...+.||+.+.++.+||..-.|||+|....+.++.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i   43 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI   43 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH
Confidence            44679999999999998865799999998887763

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.26  E-value=0.0068  Score=56.27  Aligned_cols=47  Identities=32%  Similarity=0.874  Sum_probs=37.1

Q ss_pred             CCCeeeeccccCCCCC---CeeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      .++++ ||+|.+++-.   -.+-|+||..+|..|...+.    .+||.||.....
T Consensus        12 deed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            34445 9999999843   35679999999999987663    899999987654

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.0092  Score=54.66  Aligned_cols=44  Identities=25%  Similarity=0.539  Sum_probs=37.5

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~  101 (307)
                      .-+|+||+.-..-|+.. .|+|.||.-|+.-.    ...|++||.++..
T Consensus         7 ~~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNL-YCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeeccCCcCccc-cccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            44899999999999877 89999999998755    2669999999864

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.0087  Score=60.36  Aligned_cols=44  Identities=34%  Similarity=0.606  Sum_probs=37.5

Q ss_pred             CCeeeeccccCCCCC-----CeeecCCCceechhchhhhc---CCCCCCcccC
Q 021796           55 HELLECPVCLNLMYP-----PIYQCPNGHTLCSSCKARVR---TGCPTCRHEL   99 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~-----Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~   99 (307)
                      .....|+||.+.+..     |... +|||+|+..|+.+|.   ..||.||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            446789999999987     6566 899999999999883   8999999943

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.009  Score=54.45  Aligned_cols=41  Identities=27%  Similarity=0.778  Sum_probs=36.2

Q ss_pred             eeeeccccCCCCCCeeecCCCc-eechhchhhhcCCCCCCcccC
Q 021796           57 LLECPVCLNLMYPPIYQCPNGH-TLCSSCKARVRTGCPTCRHEL   99 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH-~~C~~C~~~~~~~CP~Cr~~~   99 (307)
                      ...|.||++...+=++. +||| +.|..|-.++ +.||.||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm-~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM-NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEe-ecCcEEeehhhcccc-ccCchHHHHH
Confidence            67799999999999998 9999 6899998776 7999999865

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=94.38  E-value=0.012  Score=42.66  Aligned_cols=45  Identities=24%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             eeeeccccCCCC----CCeeec---CCCceechhchhhhc--------------CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMY----PPIYQC---PNGHTLCSSCKARVR--------------TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~----~Pi~~C---~cGH~~C~~C~~~~~--------------~~CP~Cr~~~~~  101 (307)
                      .++|+||+..+.    .|...|   .|+..|=..|+.+|.              ..||.|+.+++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            468999999864    366777   488888888988872              459999887653

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.37  E-value=0.022  Score=53.38  Aligned_cols=46  Identities=33%  Similarity=0.757  Sum_probs=39.2

Q ss_pred             CCeeeeccccCCCCCCeeecCCCce-echhchhhhc---CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+--+|-||+.-.++-+.. +|.|+ .|+.|...+.   ++||.||+++..
T Consensus       288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            4456899999999998888 99995 9999988774   889999998753

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.35  E-value=0.0055  Score=41.75  Aligned_cols=42  Identities=29%  Similarity=0.750  Sum_probs=34.1

Q ss_pred             eeeccccCCCCCCeeecCCCce-echhchhhh----cCCCCCCcccCC
Q 021796           58 LECPVCLNLMYPPIYQCPNGHT-LCSSCKARV----RTGCPTCRHELG  100 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~----~~~CP~Cr~~~~  100 (307)
                      -+|.||.+-..+.|.- .|||. .|..|-.++    ...||.||.++.
T Consensus         8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            5899999998888665 68994 899997665    378999999864

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.30  E-value=0.024  Score=50.56  Aligned_cols=43  Identities=21%  Similarity=0.697  Sum_probs=33.9

Q ss_pred             eeeccccCCC-CCCeeecCCCceechhchhhhcC-CCCCCcccCC
Q 021796           58 LECPVCLNLM-YPPIYQCPNGHTLCSSCKARVRT-GCPTCRHELG  100 (307)
Q Consensus        58 l~CpiC~~~l-~~Pi~~C~cGH~~C~~C~~~~~~-~CP~Cr~~~~  100 (307)
                      ..|..|+.-- ..|.+...|+|+||..|...... .||.|++++.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            4688777654 56767668999999999876654 9999999864

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=94.08  E-value=0.044  Score=37.62  Aligned_cols=44  Identities=27%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhc-CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-~~CP~Cr~~~~~  101 (307)
                      ...|-.|...-...+.. +|||++|..|..-.. +-||.|..++..
T Consensus         7 ~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVL-PCGHLICDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEccccccccccc-cccceeeccccChhhccCCCCCCCcccC
Confidence            44566677775555555 899999999986543 889999998753

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=93.63  E-value=0.022  Score=54.10  Aligned_cols=42  Identities=36%  Similarity=0.742  Sum_probs=35.2

Q ss_pred             eeccccCCCCCCeeecCCCceechhchhhhc-----CCCCCCcccCCc
Q 021796           59 ECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPTCRHELGN  101 (307)
Q Consensus        59 ~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~Cr~~~~~  101 (307)
                      .|-||-+--++--.. +|||+.|..|+..|.     ..||.||..+..
T Consensus       371 LCKICaendKdvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccc-cccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            499999988775455 899999999999884     789999998754

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=93.19  E-value=0.039  Score=52.94  Aligned_cols=34  Identities=38%  Similarity=0.851  Sum_probs=30.5

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR   89 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~   89 (307)
                      ++.|.||||...+++||.. +|||.+|..|.....
T Consensus         2 eeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIIL-PCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEe-ecccHHHHHHHHhhc
Confidence            5689999999999999998 999999999987653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=92.69  E-value=0.04  Score=54.09  Aligned_cols=49  Identities=22%  Similarity=0.478  Sum_probs=41.2

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc--------CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR--------TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~  101 (307)
                      .+-.....|.+|.++..+++.. .|.|.||.-|+.+..        ..||.|..+++.
T Consensus       531 ~enk~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  531 DENKGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             ccccCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            3446778999999999999877 999999999997652        689999888764

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.20  E-value=0.049  Score=50.98  Aligned_cols=44  Identities=23%  Similarity=0.531  Sum_probs=36.9

Q ss_pred             CeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      ++-.||||+--....+++ +|+|.-|+.|+.+..   +.|-.|+..+.
T Consensus       421 Ed~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhcc-CCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            455799999988888998 999999999999885   66778877654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.36  E-value=0.13  Score=47.39  Aligned_cols=45  Identities=22%  Similarity=0.603  Sum_probs=35.7

Q ss_pred             CeeeeccccCCCC--CCeeecCCCceechhchhhhc----CCCCCCcccCC
Q 021796           56 ELLECPVCLNLMY--PPIYQCPNGHTLCSSCKARVR----TGCPTCRHELG  100 (307)
Q Consensus        56 ~~l~CpiC~~~l~--~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~  100 (307)
                      .-.+|.||.+-+.  +-+..-+|.|.|=..|+.+|.    ..||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            3479999999874  223333899999999999994    79999998764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.20  E-value=0.11  Score=48.81  Aligned_cols=46  Identities=28%  Similarity=0.733  Sum_probs=35.4

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceech-hchhhhcCCCCCCcccCC
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCS-SCKARVRTGCPTCRHELG  100 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~-~C~~~~~~~CP~Cr~~~~  100 (307)
                      ++.....|-||.+-.++.++. +|||+-|. .|. +....||.||+.+.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fv-pcGh~ccct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFV-PCGHVCCCTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeee-cCCcEEEchHHH-hhCCCCchhHHHHH
Confidence            445667899999999999888 99998762 233 33477999999764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=90.93  E-value=0.14  Score=49.58  Aligned_cols=48  Identities=31%  Similarity=0.618  Sum_probs=38.4

Q ss_pred             CCCCeeeeccccCCCCCCe---eecCCCceechhchhhhc-CCCCCCcccCC
Q 021796           53 DVHELLECPVCLNLMYPPI---YQCPNGHTLCSSCKARVR-TGCPTCRHELG  100 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi---~~C~cGH~~C~~C~~~~~-~~CP~Cr~~~~  100 (307)
                      .+.++-+||||++-|-+-+   .+-.|.|.|=..|..+|. ..||+||.-..
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence            4466779999999997654   554799999999999985 78999987543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.79  E-value=0.13  Score=41.78  Aligned_cols=46  Identities=26%  Similarity=0.704  Sum_probs=36.3

Q ss_pred             CeeeeccccCCCCCCeeecC---CCceechhchhhh------cCCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPPIYQCP---NGHTLCSSCKARV------RTGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~C~---cGH~~C~~C~~~~------~~~CP~Cr~~~~~  101 (307)
                      .+++|.||.+.-.+.-+.=+   ||-.+|..|...+      ...||.|+..+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            78999999998766544311   8999999997765      3889999998754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=90.00  E-value=0.32  Score=33.17  Aligned_cols=49  Identities=31%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             cccccccCCcceeecccchHHHHHh--CC-CcCccCCCCCCCCccccChhhHHHHhhccCC
Q 021796          116 LPCRYQIWGCQDIFPYYSKLKHEKN--CN-YRPYNCPYAGAECSVTGDIPLLVRHLKNDHK  173 (307)
Q Consensus       116 ~~C~n~~~GC~~~~~~~~~~~He~~--C~-~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~  173 (307)
                      +.||+    |...+....|..|..+  .. -..+.||.    |... ...+|..|+...|.
T Consensus         3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi----C~~~-~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI----CSSR-VTDNLIRHLNSQHR   54 (54)
T ss_pred             cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC----chhh-hhhHHHHHHHHhcC
Confidence            56777    6666666677777443  22 23578887    5443 33588888888774

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.98  E-value=0.14  Score=48.48  Aligned_cols=47  Identities=23%  Similarity=0.586  Sum_probs=38.1

Q ss_pred             CCeeeeccccCCCCCCe-----e--ecCCCceechhchhhhc----------CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPI-----Y--QCPNGHTLCSSCKARVR----------TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi-----~--~C~cGH~~C~~C~~~~~----------~~CP~Cr~~~~~  101 (307)
                      .+...|-||++....+.     +  .-.|.|.||..|+.+|.          ..||.||.....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            45778999999997765     3  12699999999999984          689999997654

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=0.2  Score=47.36  Aligned_cols=44  Identities=23%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             eeeccccCCCCCC--eeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           58 LECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        58 l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      ..|.||+|-+.+=  +..=+|.|.|=..|+..|.    ..||+|++.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            6999999998643  3322899999999999994    559999997643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.51  E-value=0.19  Score=47.12  Aligned_cols=44  Identities=36%  Similarity=0.873  Sum_probs=35.6

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCceechhchhhhc-----CCCCCCccc
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPTCRHE   98 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~Cr~~   98 (307)
                      ..+.-.|-||-+-+.-.-.. +|+|..|.-|..++.     ..||.||..
T Consensus        58 DEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          58 DEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            35667799999988755455 899999999987763     889999986

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.76  E-value=0.19  Score=29.15  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=15.1

Q ss_pred             eeccccCCCCCCeeecC-CCcee
Q 021796           59 ECPVCLNLMYPPIYQCP-NGHTL   80 (307)
Q Consensus        59 ~CpiC~~~l~~Pi~~C~-cGH~~   80 (307)
                      .||.|...+..-...|+ |||.|
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCC
Confidence            47888877765556666 77765

Several members are annotated as putative helicases.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=88.71  E-value=0.27  Score=46.54  Aligned_cols=45  Identities=29%  Similarity=0.598  Sum_probs=35.0

Q ss_pred             CCeeeeccccCCC-CCC------------eeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           55 HELLECPVCLNLM-YPP------------IYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        55 ~~~l~CpiC~~~l-~~P------------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      .++-.|-||.+-+ .+|            -.. +|||.+=-.|...|.   ..||.||.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhccCCCcccCccc
Confidence            3456899999984 333            333 799999999998883   89999999953

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=0.4  Score=44.36  Aligned_cols=71  Identities=18%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             ccCCCC-eeeeccccCCCCCC-eeecCCCceechhchhhh-cCCCCCCcccCCcccchhHHHHhhccccccccccCCcce
Q 021796           51 NNDVHE-LLECPVCLNLMYPP-IYQCPNGHTLCSSCKARV-RTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQD  127 (307)
Q Consensus        51 ~~~~~~-~l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~-~~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~  127 (307)
                      ...+.. ..-|--|..++..= -+. +|.|+||..|...- .+.||.|..++     ..+|.....-.+-|. ...||..
T Consensus        83 ek~l~p~VHfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~~~dK~Cp~C~d~V-----qrIeq~~~g~iFmC~-~~~GC~R  155 (389)
T KOG2932|consen   83 EKQLGPRVHFCDRCDFPIAIYGRMI-PCKHVFCLECARSDSDKICPLCDDRV-----QRIEQIMMGGIFMCA-APHGCLR  155 (389)
T ss_pred             ccccCcceEeecccCCcceeeeccc-ccchhhhhhhhhcCccccCcCcccHH-----HHHHHhcccceEEee-cchhHHH
Confidence            334433 56688898877532 123 79999999997543 26899996643     456666666667777 4567765


Q ss_pred             e
Q 021796          128 I  128 (307)
Q Consensus       128 ~  128 (307)
                      +
T Consensus       156 T  156 (389)
T KOG2932|consen  156 T  156 (389)
T ss_pred             H
Confidence            3

>PF04641 Rtf2: Rtf2 RING-finger

Probab=87.53  E-value=0.79  Score=41.83  Aligned_cols=49  Identities=18%  Similarity=0.447  Sum_probs=39.6

Q ss_pred             CCCCeeeeccccCCCCCC---eeecCCCceechhchhhhc--CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPP---IYQCPNGHTLCSSCKARVR--TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~P---i~~C~cGH~~C~~C~~~~~--~~CP~Cr~~~~~  101 (307)
                      .-...+.|||....|..-   ++.-+|||+|+..++.++.  ..||.|..++..
T Consensus       109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE  162 (260)
T ss_pred             cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence            347789999999999542   3444899999999999885  479999999875

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=87.41  E-value=0.44  Score=32.32  Aligned_cols=37  Identities=27%  Similarity=0.788  Sum_probs=19.0

Q ss_pred             eccccCCCCC--------CeeecC-CCceechhchh---hhcCCCCCCc
Q 021796           60 CPVCLNLMYP--------PIYQCP-NGHTLCSSCKA---RVRTGCPTCR   96 (307)
Q Consensus        60 CpiC~~~l~~--------Pi~~C~-cGH~~C~~C~~---~~~~~CP~Cr   96 (307)
                      |--|...+..        ..++|+ |++.||..|-.   +.+..||-|.
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence            4456666554        357775 89999999933   3347899884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=0.42  Score=45.60  Aligned_cols=45  Identities=27%  Similarity=0.572  Sum_probs=35.6

Q ss_pred             cCCCCeeeeccccCCC---CCCeeecCCCceechhchhhhc------CCCCCCcc
Q 021796           52 NDVHELLECPVCLNLM---YPPIYQCPNGHTLCSSCKARVR------TGCPTCRH   97 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l---~~Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~   97 (307)
                      ....+.|.|||=.+.-   .||+.. .|||++|..-+.++.      .+||+|-.
T Consensus       329 ~~fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  329 YHFHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             ccccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            3568899999977765   578887 899999998888772      57888844

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.92  E-value=0.36  Score=43.27  Aligned_cols=46  Identities=20%  Similarity=0.372  Sum_probs=37.3

Q ss_pred             CeeeeccccCCCCCCe---eecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPPI---YQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi---~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ..+.||+|.+.|...+   +.-++||+||..|.+++.   ..||+|..++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence            6789999999997642   222799999999999884   679999888764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.71  E-value=0.41  Score=45.92  Aligned_cols=103  Identities=22%  Similarity=0.419  Sum_probs=60.5

Q ss_pred             CCCeeeeccccCCCCCC---eeecCCCceechhchhhhc-----------CCCCCCccc--CCc---c-----------c
Q 021796           54 VHELLECPVCLNLMYPP---IYQCPNGHTLCSSCKARVR-----------TGCPTCRHE--LGN---I-----------R  103 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~P---i~~C~cGH~~C~~C~~~~~-----------~~CP~Cr~~--~~~---~-----------~  103 (307)
                      ...++.|.||++-..-.   +++ +|+|+||..|.....           -+||.+..+  ...   +           .
T Consensus       181 ~~slf~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe  259 (445)
T KOG1814|consen  181 VNSLFDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYE  259 (445)
T ss_pred             HhhcccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHH
Confidence            36789999999987653   455 899999999986541           568865443  211   0           1


Q ss_pred             chhHHHHhhccc--cccccccCCcceeecccchHHHHHhC---CCcCc-cCCCC---CCCCccccC
Q 021796          104 CLALEKVAESLE--LPCRYQIWGCQDIFPYYSKLKHEKNC---NYRPY-NCPYA---GAECSVTGD  160 (307)
Q Consensus       104 ~~~le~~~~~l~--~~C~n~~~GC~~~~~~~~~~~He~~C---~~~p~-~Cp~~---g~~C~~~g~  160 (307)
                      ...+++.+..+.  ++||++  -|..-. ..+...-...|   .|+-| .|-..   +..|++.+.
T Consensus       260 ~l~lqk~l~~msdv~yCPr~--~Cq~p~-~~d~~~~l~~CskCnFaFCtlCk~t~HG~s~Ck~~~~  322 (445)
T KOG1814|consen  260 KLMLQKTLELMSDVVYCPRA--CCQLPV-KQDPGRALAICSKCNFAFCTLCKLTWHGVSPCKVKAE  322 (445)
T ss_pred             HHHHHHHHHhhcccccCChh--hccCcc-ccCchhhhhhhccCccHHHHHHHHhhcCCCcccCchH
Confidence            223444555554  899996  365443 33334444444   44432 13221   345888765

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=86.56  E-value=0.2  Score=51.57  Aligned_cols=45  Identities=27%  Similarity=0.584  Sum_probs=32.8

Q ss_pred             eeeeccccCCCCCCeee--cCCCceechhchhhh---cCCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIYQ--CPNGHTLCSSCKARV---RTGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~--C~cGH~~C~~C~~~~---~~~CP~Cr~~~~~  101 (307)
                      .-.||+|..-..+-...  -.|+|.||..|+..|   ...||.||..+..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            34588887665443211  258999999999887   3899999998753

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.93  E-value=0.18  Score=52.87  Aligned_cols=48  Identities=25%  Similarity=0.640  Sum_probs=38.0

Q ss_pred             CCCeeeeccccCCCC-----CCeeecC-CCceechhchhhh-----cCCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMY-----PPIYQCP-NGHTLCSSCKARV-----RTGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~-----~Pi~~C~-cGH~~C~~C~~~~-----~~~CP~Cr~~~~~  101 (307)
                      ....-+|+||..++.     -|-..|+ |.|-|=..|+-+|     .++||.||..++.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence            345668999999874     4656774 8999999999998     3889999987753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.78  E-value=0.34  Score=46.36  Aligned_cols=43  Identities=26%  Similarity=0.557  Sum_probs=35.4

Q ss_pred             eeeccccCCCCCCeeec----CCCceechhchhhhc-----CCCCCCcccCC
Q 021796           58 LECPVCLNLMYPPIYQC----PNGHTLCSSCKARVR-----TGCPTCRHELG  100 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C----~cGH~~C~~C~~~~~-----~~CP~Cr~~~~  100 (307)
                      -.||+|++-..-|.-.|    .|||.|=+.|+++|.     ..||.|.....
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            37999999988775544    699999999999984     67999987654

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=85.57  E-value=0.22  Score=36.01  Aligned_cols=38  Identities=29%  Similarity=0.697  Sum_probs=23.3

Q ss_pred             eeeccccCCCCCCeeecCCCceechhchhhh--cCCCCCCcccCC
Q 021796           58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARV--RTGCPTCRHELG  100 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~--~~~CP~Cr~~~~  100 (307)
                      +.||.|...|..     ..|+..|..|....  ...||.|.+++.
T Consensus         2 ~~CP~C~~~L~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQELEW-----QGGHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-SBEEE-----ETTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CcCCCCCCccEE-----eCCEEECccccccceecccCCCcccHHH
Confidence            689999998653     34899999997765  378999998865

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=85.48  E-value=0.55  Score=26.84  Aligned_cols=23  Identities=39%  Similarity=0.696  Sum_probs=18.3

Q ss_pred             cccccccCCcceeecccchHHHHHhCC
Q 021796          116 LPCRYQIWGCQDIFPYYSKLKHEKNCN  142 (307)
Q Consensus       116 ~~C~n~~~GC~~~~~~~~~~~He~~C~  142 (307)
                      ++|++    |..++....+..|++.|.
T Consensus         3 ~~C~~----CgR~F~~~~l~~H~~~C~   25 (25)
T PF13913_consen    3 VPCPI----CGRKFNPDRLEKHEKICK   25 (25)
T ss_pred             CcCCC----CCCEECHHHHHHHHHhcC
Confidence            56776    888888888888888874

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=84.76  E-value=0.49  Score=26.38  Aligned_cols=24  Identities=46%  Similarity=0.841  Sum_probs=17.8

Q ss_pred             ccCCCCCCCCccccChhhHHHHhhccCC
Q 021796          146 YNCPYAGAECSVTGDIPLLVRHLKNDHK  173 (307)
Q Consensus       146 ~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~  173 (307)
                      +.|+.    |+|......|..|++..|.
T Consensus         1 y~C~~----C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPH----CSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SS----SS-EESHHHHHHHHHHHHS
T ss_pred             CCCCC----CCCcCCHHHHHHHHHhhCc
Confidence            46776    8888888899999988774

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.94  E-value=0.21  Score=50.35  Aligned_cols=44  Identities=34%  Similarity=0.748  Sum_probs=34.6

Q ss_pred             cCCCCeeeeccccCCC----CCCeeecCCCceechhchhhhc-CCCCCCcc
Q 021796           52 NDVHELLECPVCLNLM----YPPIYQCPNGHTLCSSCKARVR-TGCPTCRH   97 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l----~~Pi~~C~cGH~~C~~C~~~~~-~~CP~Cr~   97 (307)
                      ..|...+.|+||+..+    ..|+.. .|||+.|..|...+. ..|| |..
T Consensus         6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~scp-~~~   54 (861)
T KOG3161|consen    6 LKWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNASCP-TKR   54 (861)
T ss_pred             hhhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhccCC-CCc
Confidence            4677889999997665    467776 799999999998874 6788 443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=82.72  E-value=1.4  Score=41.25  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccC
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHEL   99 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~   99 (307)
                      .+.-.||+|..-...|...-.-|-+||..|+....   ++||+-..+.
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            45557999999998884432569999999998763   8899766554

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.37  E-value=1.2  Score=41.28  Aligned_cols=42  Identities=31%  Similarity=0.717  Sum_probs=31.8

Q ss_pred             eeeeccccCCCC------CCeeecCCCceechhchhhhc----CCCCCCcccC
Q 021796           57 LLECPVCLNLMY------PPIYQCPNGHTLCSSCKARVR----TGCPTCRHEL   99 (307)
Q Consensus        57 ~l~CpiC~~~l~------~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~   99 (307)
                      .+.|-||.+.+.      .|-.. .|||.+|..|..++.    ..||.||.+.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            457888887764      34223 499999999999884    6689999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
2a25_A	193	Crystal Structure Of Siah1 Sbd Bound To The Peptide		1e-21
2an6_A	191	Protein-Peptide Complex Length = 191		6e-21
1k2f_A	190	Siah, Seven In Absentia Homolog Length = 190		6e-21

>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 5/182 (2%)
Query: 110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLK 169
           VA S+  PC+Y   GC+   P+  K  HE+ C +RPY+CP  GA C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 170 NDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPVYM 227
           + HK +    G         A  + +  A   + + +CFG HF L  E          + 
Sbjct: 61  HQHKSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF 117
Query: 228 AFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALF 287
           A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A  
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177
Query: 288 FS 289
           F+
Sbjct: 178 FA 179

>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Query: 113 SLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDH 172
           S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ HL + H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 173 K-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPVYMAFL 230
           K +    G         A  + +  A   + + +CFG HF L  E          + A +
Sbjct: 62  KSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 118
Query: 231 RFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFS 289
           + +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A  F+
Sbjct: 119 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA 177

>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Query: 113 SLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDH 172
           S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ HL + H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 173 K-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPVYMAFL 230
           K +    G         A  + +  A   + + +CFG HF L  E          + A +
Sbjct: 61  KSITTLQGEDI---VFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 117
Query: 231 RFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFS 289
           + +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A  F+
Sbjct: 118 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	5e-62
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-11
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-11
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	6e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	7e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	7e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	9e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	7e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	5e-04
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score =  194 bits (493), Expect = 5e-62
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 7/193 (3%)

Query: 110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLK 169
           VA S+  PC+Y   GC+   P+  K  HE+ C +RPY+CP  GA C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 170 NDHK-VDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFH-LGMAPVYM 227
           + HK +    G          N   +  A   + + +CFG HF L  E          + 
Sbjct: 61  HQHKSITTLQGEDIVFLATDIN---LPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF 117

Query: 228 AFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALF 287
           A ++ +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A  
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177

Query: 288 FSGGDRQELKLKV 300
           F+  +   L + V
Sbjct: 178 FA--ENGNLGINV 188

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHELGN---IRC 104
             +    ECP+CL  +   + Q P GH  C +C           CP     L        
Sbjct: 13  PPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 105 LALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCP 149
              ++   SL + C  +  GC           H+ +C +      
Sbjct: 72  NFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 59.0 bits (142), Expect = 5e-11
 Identities = 24/115 (20%), Positives = 30/115 (26%), Gaps = 20/115 (17%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHELGNIRCL-- 105
             +     C  C N++  P  Q   GH  CS C     +     C  C HE      +  
Sbjct: 26  TKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84

Query: 106 ----------ALEKVAESLELPCRYQIWGCQDIFPYYSKLK-HEKNCNYRPYNCP 149
                     A  +  ESL   C     GC            HE  C        
Sbjct: 85  LESSSAFPDNAARREVESLPAVCPSD--GCTWKGTLKEYESCHEGRCPLMLLEHH 137

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHELGNIRCLAL 107
             +    ECP+CL  +   + Q P GH  C +C           CP     L   +    
Sbjct: 13  PPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 108 EKVAESL-ELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVR 166
                 +  L  +    GC           H+ +C +   +CP    +C        +  
Sbjct: 72  NFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINI 127

Query: 167 HLKND 171
           H+  D
Sbjct: 128 HILKD 132

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 53  DVHELLECPVCLNLMYPPIYQCPNGHTLCSSC---KARVRTGCPTCRHELGNIRCLALEK 109
           +++  L C +C              H+ C +C          CP C  ++   R L   +
Sbjct: 11  ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query: 110 VAESLE 115
             ++L+
Sbjct: 71  SDKTLQ 76

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV-RTGCPTCRHE 98
          +LL C  C N++  P+      H  CS+C +    TGCP C   
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTP 64

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHELGN---IRC 104
             + E+  C +C+  +             C SC        R  CP CR  L     + C
Sbjct: 17  ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76

Query: 105 LALEKVAESLE 115
              E+V + L+
Sbjct: 77  RWAEEVTQQLD 87

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.9 bits (111), Expect = 8e-07
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 47  GTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC-----KARVRTGCPTCRHELGN 101
           G      + +   C  C  L+Y P+      H +C  C     KA+V + CP CRH+LG 
Sbjct: 68  GPNFLKKLEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFS-CPACRHDLGQ 125

Query: 102 IRCL----ALEKVAESLELPCRYQ 121
              +     L+ + +    P   +
Sbjct: 126 NYIMIPNEILQTLLDLF-FPGYSK 148

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 38  ATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKAR---VRTGCPT 94
            ++G SGNL     +++   + C +C   +          HT C SC  R       CP 
Sbjct: 1   GSSGSSGNL-----SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPK 55

Query: 95  CRHELGNIR 103
           C   +   +
Sbjct: 56  CNIVVHQTQ 64

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 53  DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELG----NIRC 104
              + + C +C +++  P+ +    H  C  C  R      + CP+CR+           
Sbjct: 19  HFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPV 77

Query: 105 LALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNC 141
            +   +  SL + C  Q   C +         H  + 
Sbjct: 78  KSFLNILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSH 112

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 53  DVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKAR---VRTGCPTCRHEL--GNIR-C 104
            + +LL C +C         I QC   H  CS C  +    +T CPTC   +   +++  
Sbjct: 18  TIDDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75

Query: 105 LALEKVAESLE 115
             L+++ +SL 
Sbjct: 76  RILDELVKSLN 86

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 52  NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC-----KARVRTGCPTCRHELGNIRCL- 105
           + V E  +C  C  L++ PI      H +C  C     +A+V + CP CR++LG    + 
Sbjct: 47  SKVEETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFS-CPACRYDLGRSYAMQ 104

Query: 106 ---ALEKVAESL 114
               L+ V   L
Sbjct: 105 VNQPLQTVLNQL 116

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 53 DVHELLECPVCLNLMYPP-IYQCPNGHTLCSSCKARVRTGCPTCRHEL 99
          +  + L C  C      P +  C   HTLCS C       CP C+   
Sbjct: 2  EEFQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPW 47

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 48 TTSNNDVHELLECPVCLNL-----MYPPIYQCPNGHTLCSSCKARVRTG------CPTCR 96
          + + + + E+LECP+C+       + P +  C  GHT+C  C  ++         CP C 
Sbjct: 6  SGNLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCS 63

Query: 97 HE 98
            
Sbjct: 64 KI 65

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 7   ICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNL 66
           + +E+  S  +F     A +    +    ++        + +  N+ +   L+C +C   
Sbjct: 14  LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEY 73

Query: 67  MYPPIYQCPNGHTLCSSCKARVRTG---CPTCRHEL-GNIRCLALEKVAESL 114
               +      H+ CS C          CP CR ++      L L+     +
Sbjct: 74  FIEAVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKM 124

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHEL 99
            V +  +C  C  ++  P  Q   GH  C SC     +     C  C+  +
Sbjct: 10 KTVEDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESI 60

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 58  LECPVCLNLMYPPIYQCPNGHTLCSSC----KARVRTGCPTCRHELGN 101
            +C +C+ ++  P+   P  HTLC  C      +    CP CR  + +
Sbjct: 16  CQCGICMEILVEPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 53  DVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARV-RTG---CPTCRHELGNIRCL 105
            +H  L CP+CL+++       +C   H  C+ C     R+G   CPTCR +L + R L
Sbjct: 50  SLHSELMCPICLDMLKNTMTTKEC--LHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 49  TSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC-----KARVRTGCPTCRHELGNIR 103
             ++ + + L C +C ++M   +     G++ C  C            CPTC     +  
Sbjct: 7   GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

Query: 104 CLA 106
            L+
Sbjct: 67  ALS 69

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 56 ELLECPVCLNLMYPPIY-QCPNGHTLCSSCKARV---RTGCPTCRHEL 99
           + EC +CL     P+   C   H  C  C          C  CR E+
Sbjct: 14 TVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEI 59

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 50 SNNDVHELLECPVCLNLMYPP--IYQCPNGHTLCSSC-----KARVRTGCPTCRHE 98
           ++ + + L C +C ++M     I  C  G++ C  C            CPTC   
Sbjct: 6  EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQN 59

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 50 SNNDVHELLECPVCLNLMYPP---IYQCPNGHTLCSSCKARVRTG----CPTCRHE 98
          S +   + +ECP+C+  +       + C  G+ +C  C  R+RT     CP CR  
Sbjct: 4  SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 44  GNLGTTSNNDVHEL-LECPVCLNLMYPPIY-QCPNGHTLCSSCKA---RVRTGCPTCRHE 98
           G+ G++  ++  E+   C +C      P+  +C   H  C SC     R    C  C   
Sbjct: 1   GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQP 58

Query: 99  LGNI 102
            G I
Sbjct: 59  TGGI 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	100.0
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.85
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.67
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.63
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.62
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.11
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.08
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.03
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.02
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.0
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.0
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.0
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.99
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.97
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.93
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.92
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.91
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.9
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.88
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.87
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.86
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.86
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.85
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.83
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.82
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.82
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.81
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.81
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.78
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.78
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.75
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.73
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.72
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.71
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.69
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.67
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.63
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.62
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.62
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.58
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.58
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.57
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.57
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.53
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.52
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.52
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.51
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.48
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.47
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.47
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.46
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.35
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.28
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.27
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.26
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.23
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.03
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.02
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.92
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.85
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.8
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.77
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.75
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.64
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.62
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.48
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.38
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.31
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.3
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.58
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.51
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	96.49
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.31
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.1
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.34
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.94
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	91.83
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	91.19
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	90.94
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	89.99
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	89.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	88.49
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	88.16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	86.86
1z60_A	59	TFIIH basal transcription factor complex P44 subun	85.01
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	83.79
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	83.36
3nw0_A	238	Non-structural maintenance of chromosomes element	83.2
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	83.18
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	80.88
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	80.4

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=100.00  E-value=1.7e-44  Score=313.42  Aligned_cols=189  Identities=29%  Similarity=0.632  Sum_probs=132.3

Q ss_pred             HhhccccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCC-CcccCceeEEEEee
Q 021796          110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKV-DMHDGSTFNHRYVK  188 (307)
Q Consensus       110 ~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~-~~~~g~~~~~~~~~  188 (307)
                      +++++++||+|+.+||+++++|.++..||+.|+|+||.||.+|.+|+|+|+.++|..|++.+|++ .++.|+++  .|++
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~   78 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA   78 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence            46789999999999999999999999999999999999999988899999999999999999997 46778876  5777


Q ss_pred             cccccccccceEEEEEeecCceEEEEEeeeeeCC-ccEEEEEEEEeCChhhccCcEEEEEEecCCceEEEeeecceeecc
Q 021796          189 ANALEIENATWMLTVFNCFGRHFCLHFEAFHLGM-APVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDS  267 (307)
Q Consensus       189 ~~~~~~~~~~~~l~~~~~~~~~F~l~~~~~~~~~-~~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~~si~~~  267 (307)
                      ++++.....+|+ ++++|||++|+|+++++.++. +++|+++|++||++++|++|+|+|++.+++|+|+|+++|+|++++
T Consensus        79 ~~~~l~~~~~~~-~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~  157 (193)
T 2a25_A           79 TDINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG  157 (193)
T ss_dssp             ECCC----CEEE-EEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred             cccccccceeEE-EEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence            777655667896 588999999999999998765 367788899999999999999999999999999999999999999


Q ss_pred             ccccccCCCeeEEcCcccceecCCCeEEEEEEEE
Q 021796          268 HKRVRDSQDGLIIQRNLALFFSGGDRQELKLKVA  301 (307)
Q Consensus       268 ~~~~~~~~d~l~i~~~~~~~~~~~~~~~l~~~i~  301 (307)
                      +..++++.|||+||++++++|++|++|.|+|+|+
T Consensus       158 ~~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~  191 (193)
T 2a25_A          158 IATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS  191 (193)
T ss_dssp             SHHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEE
T ss_pred             ccccccCCCEEEEcHHHHHhhcCCCeEEEEEEEE
Confidence            9998899999999999999999999999999995

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.85  E-value=8.2e-22  Score=167.24  Aligned_cols=122  Identities=20%  Similarity=0.408  Sum_probs=109.5

Q ss_pred             CCCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhcccccccc
Q 021796           48 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLELPCRY  120 (307)
Q Consensus        48 ~~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~~~C~n  120 (307)
                      ..+...+.+.+.||||++++.+|+. ++|||+||..|+.++.    ..||.||.++..   .++.++++++.++++.|+|
T Consensus         9 ~~~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n   87 (170)
T 3hcs_A            9 VEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN   87 (170)
T ss_dssp             SEESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS
T ss_pred             hhhccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC
Confidence            3356678899999999999999976 5999999999999874    489999999876   5789999999999999998


Q ss_pred             ccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCc
Q 021796          121 QIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDM  176 (307)
Q Consensus       121 ~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~  176 (307)
                        .||++.+++.++..|+++|+|+++.||    +|++.+.+.+|..|+......+.
T Consensus        88 --~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~  137 (170)
T 3hcs_A           88 --EGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQ  137 (170)
T ss_dssp             --TTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCE
T ss_pred             --CCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCC
Confidence              599999999999999999999999998    39999999999999988777554

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.67  E-value=3.6e-17  Score=130.48  Aligned_cols=94  Identities=21%  Similarity=0.439  Sum_probs=82.9

Q ss_pred             CCccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccccccccc
Q 021796           49 TSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLELPCRYQ  121 (307)
Q Consensus        49 ~~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~~~C~n~  121 (307)
                      .....+.+.+.||||++++..|+.. +|||+||..|+.++.    ..||.||.++..   .++..+++.+.++++.|+| 
T Consensus        10 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n-   87 (118)
T 3hct_A           10 EFDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN-   87 (118)
T ss_dssp             CBSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred             hhccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence            3556788899999999999999776 999999999998873    489999999876   4788999999999999997 


Q ss_pred             cCCcceeecccchHHHHHhCCCcC
Q 021796          122 IWGCQDIFPYYSKLKHEKNCNYRP  145 (307)
Q Consensus       122 ~~GC~~~~~~~~~~~He~~C~~~p  145 (307)
                       .||++.+++.++.+|+++|.+..
T Consensus        88 -~gC~~~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           88 -EGCLHKMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             -TTCCCEEEGGGSGGGTSSSCC--
T ss_pred             -CCCCCEEeeHHHHHHHHHchhhh
Confidence             79999999999999999988753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.63  E-value=4.7e-17  Score=133.91  Aligned_cols=89  Identities=27%  Similarity=0.422  Sum_probs=78.0

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc------------ccchhHHHHhhcc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN------------IRCLALEKVAESL  114 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~------------~~~~~le~~~~~l  114 (307)
                      ...+.+.+.||||++++.+|+.+ +|||+||..|+.++.    ..||.||.++..            .++..+++.+.++
T Consensus        25 ~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L  103 (141)
T 3knv_A           25 GTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL  103 (141)
T ss_dssp             GGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred             hccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence            35778999999999999999765 999999999999884    379999997531            3778899999999


Q ss_pred             ccccccccCCcceeecccchHH-HHHhCC
Q 021796          115 ELPCRYQIWGCQDIFPYYSKLK-HEKNCN  142 (307)
Q Consensus       115 ~~~C~n~~~GC~~~~~~~~~~~-He~~C~  142 (307)
                      +++|+|  .||.|.+++.+++. |+..|.
T Consensus       104 ~v~Cpn--~GC~~~~~l~~l~~~H~~~~~  130 (141)
T 3knv_A          104 PAVCPS--DGCTWKGTLKEYESCHEGRCP  130 (141)
T ss_dssp             EEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred             ccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence            999999  69999999999998 998775

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.62  E-value=1.3e-16  Score=126.77  Aligned_cols=90  Identities=19%  Similarity=0.396  Sum_probs=79.6

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccccccccccC
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLELPCRYQIW  123 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~~~C~n~~~  123 (307)
                      .++.+.+.||||++++.+|+.. +|||+||..|+.++.    ..||.||.++..    ..+..+.+++..+++.|+|.  
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--   94 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--   94 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--
T ss_pred             HhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--
Confidence            3456788999999999999876 999999999998873    579999999875    35678899999999999995  


Q ss_pred             CcceeecccchHHHHHhCCCc
Q 021796          124 GCQDIFPYYSKLKHEKNCNYR  144 (307)
Q Consensus       124 GC~~~~~~~~~~~He~~C~~~  144 (307)
                      ||++.+++.++..|+++|.+.
T Consensus        95 gC~~~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           95 DCNEEVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             TCCCEEEHHHHHHHHHTSCCC
T ss_pred             CCcchhhHhHHHHHHHHhhcc
Confidence            999999999999999999874

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.11  E-value=5.4e-11  Score=89.99  Aligned_cols=68  Identities=21%  Similarity=0.475  Sum_probs=56.5

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCC----cccchhHHHHhhccccccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELG----NIRCLALEKVAESLELPCR  119 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~----~~~~~~le~~~~~l~~~C~  119 (307)
                      ...+.+.+.||||++++.+|+.. + |||+||..|+.++.     ..||.||.++.    ..+|..++++++.+.-.-.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            35678889999999999999877 7 99999999998873     58999999973    2678899998888765443

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.08  E-value=6e-11  Score=86.94  Aligned_cols=62  Identities=23%  Similarity=0.394  Sum_probs=53.0

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ++.+.+.||||++++.+|+.. +|||+||..|+.++.    ..||.|+.++..   .+|..++++++.+.
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence            467789999999999999887 899999999998874    569999999864   57888888887654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.03  E-value=2.8e-10  Score=87.52  Aligned_cols=65  Identities=22%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCC-ceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhcccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNG-HTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLEL  116 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cG-H~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~~  116 (307)
                      ...+.+.|.||||+++|++||.. +|| |+||..|+.++.   ..||.|+.++..   .+|..+.+++..+.-
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~   87 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA   87 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred             hhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence            35668899999999999999887 899 999999999884   689999999875   688889888887643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=86.49  Aligned_cols=60  Identities=27%  Similarity=0.649  Sum_probs=48.2

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhh---------cCCCCCCcccCCc---ccchhHHHH
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---------RTGCPTCRHELGN---IRCLALEKV  110 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~~~~~le~~  110 (307)
                      ....+.+.+.|+||++.+..|+.. +|||.||..|+.++         ...||.||..+..   .+|..++++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            345678889999999999999877 99999999999876         3689999998874   345544443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=4.1e-10  Score=81.25  Aligned_cols=51  Identities=27%  Similarity=0.786  Sum_probs=44.4

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhcC------CCCCCcccCCc
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRT------GCPTCRHELGN  101 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~------~CP~Cr~~~~~  101 (307)
                      ....+.+.+.||||++.+..|+.. +|||.||..|+.++..      .||.||.++..
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            345678889999999999999887 9999999999998853      79999998764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.00  E-value=2.7e-10  Score=85.25  Aligned_cols=63  Identities=21%  Similarity=0.211  Sum_probs=54.7

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ..+.+.|.||||+++|++||.. +|||+||..|+.++.   ..||.|+.++..   .+|..+.++++.+.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence            4567899999999999999887 799999999999883   789999999875   67888888887663

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.00  E-value=8.2e-11  Score=86.23  Aligned_cols=59  Identities=31%  Similarity=0.695  Sum_probs=47.2

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----------CCCCCCcccCCc---ccchhHHH
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----------TGCPTCRHELGN---IRCLALEK  109 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----------~~CP~Cr~~~~~---~~~~~le~  109 (307)
                      ....+.+.+.||||++.+..|+.. +|||.||..|+.++.          ..||.||.++..   .+|..+++
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             hHhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            345678899999999999999876 999999999998752          479999998864   34444443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.99  E-value=1.4e-10  Score=85.92  Aligned_cols=60  Identities=25%  Similarity=0.618  Sum_probs=47.8

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhh---------cCCCCCCcccCCc---ccchhHHHH
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---------RTGCPTCRHELGN---IRCLALEKV  110 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~~~~~le~~  110 (307)
                      ....+.+.+.|+||++.+..|+.. +|||.||..|+.++         ...||.||.++..   .+|..++++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            345677889999999999999876 89999999999876         3579999998864   345555444

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=6.7e-10  Score=81.99  Aligned_cols=60  Identities=18%  Similarity=0.384  Sum_probs=47.4

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc--ccchhHHHHhh
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN--IRCLALEKVAE  112 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~--~~~~~le~~~~  112 (307)
                      ....+.+.|+||++.+..|+.. +|||+||..|+.++.   ..||.||.++..  .++..+.+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~   74 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ   74 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred             ccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence            4456788999999999999876 999999999998883   689999999864  34544444443

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.93  E-value=9.6e-10  Score=84.81  Aligned_cols=63  Identities=21%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ..+.+.|.||||+++|.+||.. +|||+||..|+.++.   ..||.|+.++..   .+|..+.+++..+.
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             ccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            4567899999999999999988 799999999999884   689999999875   68888888887764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.92  E-value=2e-10  Score=88.19  Aligned_cols=65  Identities=25%  Similarity=0.537  Sum_probs=54.3

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ...+.+.+.|+||++.+.+|+..-+|||.||..|+.++.   ..||.||.++..   .+|..++++++.++
T Consensus        16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~   86 (99)
T 2y43_A           16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN   86 (99)
T ss_dssp             GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            345567899999999999997654799999999998884   689999999874   57888888887764

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.2e-09  Score=78.85  Aligned_cols=52  Identities=21%  Similarity=0.502  Sum_probs=44.8

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ...++.+.+.|+||++.+.+|+..-+|||.||..|+.++.   ..||.||.++..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            3466788999999999999997655899999999998873   789999998865

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.90  E-value=1.3e-09  Score=79.09  Aligned_cols=49  Identities=24%  Similarity=0.657  Sum_probs=42.8

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCC
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELG  100 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~  100 (307)
                      ...+.+.+.||||++.+.+|+.. + |||+||..|+.++.     ..||.||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            45678899999999999999887 7 99999999999884     48999999754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=77.39  Aligned_cols=51  Identities=24%  Similarity=0.577  Sum_probs=44.0

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      ....+.+.+.||||++.+..|+.. +|||.||..|+.++.    ..||.||.++..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hhhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            345667889999999999999876 999999999999874    579999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.87  E-value=9e-10  Score=89.77  Aligned_cols=58  Identities=22%  Similarity=0.584  Sum_probs=46.0

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc-ccchhHHHHhh
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN-IRCLALEKVAE  112 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~-~~~~~le~~~~  112 (307)
                      +.+.+.||||++.+.+|+.. +|||.||..|+.+|.   ..||.||.++.. ..+..+..++.
T Consensus        50 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~  111 (138)
T 4ayc_A           50 LENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN  111 (138)
T ss_dssp             HHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred             ccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence            34567899999999999887 899999999999874   789999999875 33444444433

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=75.54  Aligned_cols=45  Identities=31%  Similarity=0.844  Sum_probs=39.0

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCC
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTC   95 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~C   95 (307)
                      ....+.+.+.||||++.+.+|+.. +|||+||..|+.++.      ..||.|
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            445678899999999999999887 999999999999884      369887

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.86  E-value=4.1e-10  Score=86.75  Aligned_cols=62  Identities=24%  Similarity=0.498  Sum_probs=49.0

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhh
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAE  112 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~  112 (307)
                      ...+.+.+.|+||++.+..|+..-+|||+||..|+.++.    ..||.||.++..   .+++.++.+..
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~   84 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ   84 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred             cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence            345678899999999999998723899999999999883    589999999865   35555555544

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=87.64  Aligned_cols=62  Identities=32%  Similarity=0.685  Sum_probs=52.4

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhcc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESL  114 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l  114 (307)
                      ..+.+.+.||||++.+.+|+.. +|||+||..|+.++.    ..||.||.++..    .+|..+.+++..+
T Consensus        47 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           47 SKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred             HhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            4556788999999999999887 999999999998873    489999999865    5778888887665

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=1.4e-09  Score=86.10  Aligned_cols=65  Identities=25%  Similarity=0.497  Sum_probs=53.6

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ...+.+.+.||||++++..|+...+|||+||..|+.++. ..||.||.++..   .+|..+.+++..+.
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~   84 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence            345577899999999999998766899999999999885 589999999864   56788888777543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.82  E-value=1.4e-09  Score=74.75  Aligned_cols=46  Identities=30%  Similarity=0.585  Sum_probs=41.1

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      .+.+.|+||++.+..|+.. +|||+||..|+.++...||.||..+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEc-CCCCcccHHHHccCCCCCCcCCcEeec
Confidence            5678899999999999877 899999999998877899999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=3.4e-09  Score=76.16  Aligned_cols=47  Identities=28%  Similarity=0.675  Sum_probs=41.1

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ..+.+.|+||++.+..|+.. +|||.||..|+.++.   ..||.||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            35678999999999999887 899999999999873   679999998763

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.81  E-value=1.7e-09  Score=90.69  Aligned_cols=65  Identities=23%  Similarity=0.540  Sum_probs=53.7

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLE  115 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~  115 (307)
                      ...+.+.+.||||++.+.+|+...+|||.||..|+.++.    ..||.||.++..    .+|..+++++..+.
T Consensus        48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~  120 (165)
T 2ckl_B           48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY  120 (165)
T ss_dssp             --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred             hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence            345678899999999999998766899999999999884    569999999864    46788888887764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.81  E-value=1.3e-09  Score=84.84  Aligned_cols=64  Identities=19%  Similarity=0.391  Sum_probs=52.7

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc-------ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN-------IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~-------~~~~~le~~~~~l~  115 (307)
                      ..+.+.+.||||++.+.+|+...+|||+||..|+.++.   ..||.|+..+..       .+|..+.+++..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            45577899999999999998765899999999999884   689999999864       35677778777653

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.78  E-value=2.3e-09  Score=88.65  Aligned_cols=63  Identities=29%  Similarity=0.662  Sum_probs=53.3

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~~~~~le~~~~~l~  115 (307)
                      ..+.+.+.|+||++++.+|+.+ +|||+||..|+.++.    ..||.||.++..    .+|..+.+++..+.
T Consensus        73 ~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           73 KKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             HhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            3456788999999999999887 999999999999884    379999999875    47888888887654

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.4e-09  Score=80.67  Aligned_cols=63  Identities=25%  Similarity=0.421  Sum_probs=51.7

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---------CCCCC--Cccc-CCc---ccchhHHHHhhccc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---------TGCPT--CRHE-LGN---IRCLALEKVAESLE  115 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---------~~CP~--Cr~~-~~~---~~~~~le~~~~~l~  115 (307)
                      ...+.|.||||+++|.+||....|||+||..|+.++.         ..||.  |+.. +..   .+|..|.+++..+.
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence            3467899999999999998873499999999998883         28999  8865 543   68899999888764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=3.5e-09  Score=75.17  Aligned_cols=49  Identities=27%  Similarity=0.674  Sum_probs=41.2

Q ss_pred             ccCCCCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           51 NNDVHELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      ...+.+.+.|+||++.+..|       +.. +|||.||..|+.+|.   ..||.||.++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            34557788999999999877       555 899999999999883   78999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.73  E-value=4.4e-09  Score=82.79  Aligned_cols=62  Identities=23%  Similarity=0.559  Sum_probs=48.9

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc----------ccchhHHHHhhcc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN----------IRCLALEKVAESL  114 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----------~~~~~le~~~~~l  114 (307)
                      ..+.+.+.|+||++.+..|+.. +|||+||..|+.++.    ..||.||..+..          ..|..+.+++..+
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~   85 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH   85 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred             cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence            3456789999999999999888 999999999998874    479999998753          2345555555543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=1e-08  Score=76.45  Aligned_cols=50  Identities=30%  Similarity=0.739  Sum_probs=43.0

Q ss_pred             ccCCCCeeeeccccCCCCC----CeeecCCCceechhchhhhc------CCCCCCcccCCc
Q 021796           51 NNDVHELLECPVCLNLMYP----PIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN  101 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~----Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~  101 (307)
                      ...+.+.+.|+||++.+..    |+.. +|||.||..|+.++.      ..||.||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            9 LDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            4566788999999999998    8776 899999999999883      589999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1.1e-08  Score=70.22  Aligned_cols=45  Identities=29%  Similarity=0.750  Sum_probs=38.2

Q ss_pred             CccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCC
Q 021796           50 SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTC   95 (307)
Q Consensus        50 ~~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~C   95 (307)
                      ..+.+.+.+.|+||++.+.+|+.. +|||+||..|+.++.      ..||.|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345667889999999999999876 899999999999882      568877

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.69  E-value=2.3e-09  Score=83.73  Aligned_cols=59  Identities=25%  Similarity=0.767  Sum_probs=46.0

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCCcccCCc---ccchhHHHHhhc
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN---IRCLALEKVAES  113 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~---~~~~~le~~~~~  113 (307)
                      +.+.+.||||++.+..|+.. +|||.||..|+.++.      ..||.||.++..   .++..++++++.
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~   85 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEE   85 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHH
T ss_pred             ccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHH
Confidence            45678999999999999876 999999999999874      279999998875   344444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.69  E-value=1.1e-08  Score=92.04  Aligned_cols=63  Identities=24%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ....+.+.||||++++.+||.. +|||+||..|+.++.    ..||.|+.++..   .+|..+.+++..+.
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~  272 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI  272 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence            4557889999999999999887 899999999999873    349999999875   68889999888764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.67  E-value=1.1e-08  Score=75.17  Aligned_cols=51  Identities=27%  Similarity=0.740  Sum_probs=40.5

Q ss_pred             ccCCCCeeeeccccCCCC--CCe-eecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           51 NNDVHELLECPVCLNLMY--PPI-YQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~--~Pi-~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      ...+.+.+.||||++++.  ++. ..|.|||.||..|+.++.    ..||.||+++..
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            345678899999999984  343 335699999999998873    689999998875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=3.3e-08  Score=71.61  Aligned_cols=49  Identities=24%  Similarity=0.510  Sum_probs=39.6

Q ss_pred             CCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ...+...|+||++.+..+  +..-+|||.||..|+.+|.   ..||.||.++..
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            345677999999999877  2333899999999999883   789999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.62  E-value=1.9e-08  Score=85.33  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=54.8

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ..+++.|.||||+++|.+||.. +|||+||..|+.++.    ..||.|+.++..   .+|..+.+++..+.
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             cCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence            5668899999999999999988 899999999999873    359999999875   68889988888764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.62  E-value=7.8e-09  Score=73.90  Aligned_cols=48  Identities=27%  Similarity=0.714  Sum_probs=40.6

Q ss_pred             CCCCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ...+.+.|+||++.+..|       +.. +|||.||..|+.+|.   ..||.||.++..
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            346678999999999887       554 899999999998873   789999998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=4.8e-09  Score=76.37  Aligned_cols=48  Identities=25%  Similarity=0.651  Sum_probs=41.9

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      ..+.+.+.|+||++.+.+|++. +|||. ||..|+.+. ..||.||.++..
T Consensus        20 ~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   68 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred             HcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC-CCCccCCceecC
Confidence            3446678999999999999887 99999 999999875 899999998865

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.58  E-value=5.5e-08  Score=70.89  Aligned_cols=50  Identities=34%  Similarity=0.598  Sum_probs=40.5

Q ss_pred             cCCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ....+.+.|+||++.+..+  +..-+|||.||..|+.+|.   ..||.||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            3456678999999999765  3333799999999999883   789999998865

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.57  E-value=3.9e-09  Score=76.68  Aligned_cols=47  Identities=26%  Similarity=0.663  Sum_probs=42.1

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      .+.+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++..
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   67 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred             cCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence            445678999999999999988 99999 999999988 899999998865

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=2.4e-08  Score=71.25  Aligned_cols=48  Identities=23%  Similarity=0.672  Sum_probs=41.2

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ..+.+.+.|+||++.+.. +.. +|||.||..|+.++.   ..||.||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             hcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            455778899999999998 666 899999999999873   789999998764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.53  E-value=2.1e-08  Score=70.63  Aligned_cols=45  Identities=33%  Similarity=0.673  Sum_probs=37.6

Q ss_pred             CeeeeccccC-CCCCCe----eecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           56 ELLECPVCLN-LMYPPI----YQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~-~l~~Pi----~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      +.+.||||++ .+..|.    .. +|||+||..|+.++.    ..||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            3578999999 888883    34 899999999999882    579999998864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=9.9e-08  Score=68.79  Aligned_cols=50  Identities=24%  Similarity=0.531  Sum_probs=40.7

Q ss_pred             cCCCCeeeeccccCCCCCC--eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPP--IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .++.....|+||++.+..+  +...+|||.||..|+.+|.   ..||.||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            4556678999999999766  3334799999999999883   789999998765

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.52  E-value=7.9e-08  Score=65.13  Aligned_cols=46  Identities=26%  Similarity=0.538  Sum_probs=37.4

Q ss_pred             CCeeeeccccCCCCC---CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           55 HELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      .+...|+||++.+..   ++..-.|||.||..|+.+|.   ..||.||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            556789999999976   55442399999999999883   78999998763

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.51  E-value=2.2e-08  Score=69.90  Aligned_cols=45  Identities=29%  Similarity=0.814  Sum_probs=38.4

Q ss_pred             CeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +.+.|+||++.+..|       +.. +|||.||..|+.++.   ..||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            457899999999876       555 899999999999874   689999998864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=1.2e-07  Score=67.67  Aligned_cols=45  Identities=31%  Similarity=0.639  Sum_probs=40.1

Q ss_pred             CCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      .+...|+||++...++++. +|||. +|..|.... ..||.||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKYF-QQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence            4567899999999999888 99999 999999875 899999998865

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.47  E-value=1.1e-07  Score=67.35  Aligned_cols=46  Identities=26%  Similarity=0.569  Sum_probs=38.9

Q ss_pred             CeeeeccccCCCCCCeeecCCCceechhchhhh---cCCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV---RTGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~---~~~CP~Cr~~~~~  101 (307)
                      ....|+||++.+..|+..-+|||.||..|+.++   ...||.||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            456899999999998555489999999999887   3789999998764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.47  E-value=8.6e-08  Score=64.89  Aligned_cols=44  Identities=27%  Similarity=0.588  Sum_probs=36.5

Q ss_pred             CeeeeccccCCCCC----CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           56 ELLECPVCLNLMYP----PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        56 ~~l~CpiC~~~l~~----Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      +...|+||++.+..    ++.. +|||.||..|+.++.   ..||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            45689999999865    4444 899999999999884   78999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=1.7e-07  Score=66.57  Aligned_cols=49  Identities=20%  Similarity=0.545  Sum_probs=38.7

Q ss_pred             CCCCeeeeccccCCCCC--CeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYP--PIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~--Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +......|+||++.+..  ++..-+|||.||..|+.+|.   ..||.||.++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            34567789999998852  33444899999999999873   789999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.35  E-value=2.5e-07  Score=69.66  Aligned_cols=46  Identities=24%  Similarity=0.494  Sum_probs=38.3

Q ss_pred             CCCeeeeccccCCCCC---CeeecCCCceechhchhhhc---CCCCCCcccCC
Q 021796           54 VHELLECPVCLNLMYP---PIYQCPNGHTLCSSCKARVR---TGCPTCRHELG  100 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~---Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~  100 (307)
                      ..+...|+||++.+..   ++.. +|||.||..|+.+|.   ..||.||.++.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            3567899999999876   5445 899999999999884   78999999875

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.28  E-value=2.9e-07  Score=82.05  Aligned_cols=64  Identities=16%  Similarity=0.260  Sum_probs=52.4

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-----CCCCC--CcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-----TGCPT--CRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-----~~CP~--Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ......+.||||+++|.+||..-.|||+||..|+.++.     ..||.  |++.+..   .+|..|.++++..+
T Consensus       176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k  249 (267)
T 3htk_C          176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK  249 (267)
T ss_dssp             CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred             cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence            34578899999999999998643799999999999874     36999  9998765   67888888876643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.27  E-value=2.5e-07  Score=67.94  Aligned_cols=46  Identities=35%  Similarity=0.815  Sum_probs=40.8

Q ss_pred             CCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      +.+...|+||++.+..|++. +|||. ||..|..++ ..||.||.++..
T Consensus        15 l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   61 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL-QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred             CCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc-CcCCCCCchhhC
Confidence            34567899999999999998 99999 999999887 699999998875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.26  E-value=1.9e-07  Score=74.47  Aligned_cols=46  Identities=28%  Similarity=0.760  Sum_probs=40.2

Q ss_pred             CCeeeeccccCCCCCC-------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPP-------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~P-------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+.+.|+||++.+.+|       +.. +|||+||..|+.++.   ..||.||..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            4578999999999888       666 999999999999883   689999998875

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.23  E-value=5.7e-07  Score=70.29  Aligned_cols=45  Identities=18%  Similarity=0.454  Sum_probs=36.6

Q ss_pred             eeeeccccCCCCCCe-----------------eecCCCceechhchhhhc--------CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPI-----------------YQCPNGHTLCSSCKARVR--------TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi-----------------~~C~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~  101 (307)
                      ...|+||++.+..|.                 ..-+|||.||..|+.+|.        ..||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            458999999997653                 133799999999999884        479999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=4.5e-06  Score=61.36  Aligned_cols=46  Identities=17%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             CeeeeccccCCCCC--------------CeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYP--------------PIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~--------------Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +...|+||++.+..              ++....|||.|+..|+.+|.   ..||+||.++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45579999999976              44443699999999999884   789999998753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.03  E-value=2.2e-06  Score=80.77  Aligned_cols=46  Identities=30%  Similarity=0.697  Sum_probs=40.3

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~  101 (307)
                      .....|+||.+.+..|+.. +|||.||..|+.++    ...||.||.++..
T Consensus       330 ~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          330 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             TSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3457999999999999888 99999999999876    3789999998865

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.02  E-value=2.5e-06  Score=79.63  Aligned_cols=47  Identities=28%  Similarity=0.758  Sum_probs=42.1

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCce-echhchhhhcCCCCCCcccCCc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHT-LCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~-~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      .+.+.+.|+||++.+..|++. +|||. ||..|+.++ ..||.||.++..
T Consensus       291 ~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i~~  338 (345)
T 3t6p_A          291 RLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-RKCPICRGIIKG  338 (345)
T ss_dssp             HHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred             hCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence            345678999999999999988 99999 999999987 899999998864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.92  E-value=2.3e-06  Score=68.04  Aligned_cols=48  Identities=29%  Similarity=0.715  Sum_probs=39.9

Q ss_pred             CCCeeeeccccCCCCCC------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           54 VHELLECPVCLNLMYPP------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~P------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ..+.+.|+||++.+..|      +...+|||.||..|+.+|.   ..||.||.++..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            35678899999999876      1344999999999999883   899999998864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.85  E-value=5.6e-06  Score=58.06  Aligned_cols=46  Identities=22%  Similarity=0.582  Sum_probs=38.2

Q ss_pred             CeeeeccccCCCCCCeee-cCCCce-echhchhhhc---CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPPIYQ-CPNGHT-LCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~-C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +...|+||++...++++. -+|||. +|..|..++.   ..||.||+++..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            456899999999999753 379999 8999998874   579999998764

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=1e-05  Score=61.41  Aligned_cols=53  Identities=19%  Similarity=0.356  Sum_probs=44.7

Q ss_pred             ccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhc
Q 021796          115 ELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKN  170 (307)
Q Consensus       115 ~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~  170 (307)
                      .+.|||   .|...+...++.+|...|+...+.|++...+|.+++.+.+|..|++.
T Consensus        37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~   89 (100)
T 2yre_A           37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM   89 (100)
T ss_dssp             EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred             eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence            678885   58778888888888888888888888888888888888888888874

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.79  E-value=8.6e-06  Score=61.80  Aligned_cols=59  Identities=17%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             CCC-CCcccCCcccchhHHHHhhccccccccccCCcceeecccchHHHHHhCCCcCccCC
Q 021796           91 GCP-TCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCP  149 (307)
Q Consensus        91 ~CP-~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp  149 (307)
                      .|| .|...+-...-.....+.....++|+|+.+||+.++.+.++.+||+.|+-..+.|.
T Consensus        39 ~CP~~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           39 GCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             ECTTCCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             eCCcccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            477 67553322222333455778899999999999999999999999999998887774

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.77  E-value=9.4e-06  Score=56.72  Aligned_cols=45  Identities=27%  Similarity=0.638  Sum_probs=37.1

Q ss_pred             eeeeccccCCCCCCee-ecCCCce-echhchhhhc---CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIY-QCPNGHT-LCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~-~C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      ...|+||++...++++ .-+|||. +|..|..++.   ..||.||+++..
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            4579999999998853 2389998 9999998874   489999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.75  E-value=5.4e-06  Score=62.56  Aligned_cols=43  Identities=19%  Similarity=0.466  Sum_probs=33.9

Q ss_pred             CeeeeccccCCCCCCeee--cCCCceechhchhhhc-----------CCCCC--Cccc
Q 021796           56 ELLECPVCLNLMYPPIYQ--CPNGHTLCSSCKARVR-----------TGCPT--CRHE   98 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~--C~cGH~~C~~C~~~~~-----------~~CP~--Cr~~   98 (307)
                      +.+.|+||++.+..|...  -.|||.||..|+.+..           ..||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            467899999999888543  2599999999987652           26888  8877

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.64  E-value=2.7e-05  Score=60.33  Aligned_cols=45  Identities=20%  Similarity=0.320  Sum_probs=36.6

Q ss_pred             eeeeccccCCCCCC-----------------eeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPP-----------------IYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~P-----------------i~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .-.|+||++.+..+                 +..-+|||.|+..|+.+|.   ..||+||.++..
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            45799999998765                 3334799999999999984   789999998654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.62  E-value=3.2e-05  Score=53.73  Aligned_cols=45  Identities=11%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .+.|||+++++.+|+..-.+||+|+..|+.+|.   ..||.+++++..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            478999999999997653699999999999984   679999998864

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.48  E-value=3.7e-05  Score=55.47  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             hccccccccccCCcceeecccchHHHHH-hCCCcCccCCCCCCCCccccChhhHHHHhhccCC
Q 021796          112 ESLELPCRYQIWGCQDIFPYYSKLKHEK-NCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHK  173 (307)
Q Consensus       112 ~~l~~~C~n~~~GC~~~~~~~~~~~He~-~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~  173 (307)
                      ....+.|++   ||...+.+.++..|+. +|+++++.|++    |+....+.+|..|. ....
T Consensus        13 ~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~-~~Cp   67 (76)
T 2yuc_A           13 SFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHE-GMCP   67 (76)
T ss_dssp             CCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTT-TSCT
T ss_pred             CCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHH-hHCC
Confidence            346788986   7999999999999988 89999999998    88999999999998 3444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.38  E-value=8e-05  Score=62.13  Aligned_cols=100  Identities=20%  Similarity=0.381  Sum_probs=68.3

Q ss_pred             eeccccCCCCCC-eeecCCCceechhchhhhcCCCC--CCcccCCcccchhHHHHhhccccccccccCCcceeecccchH
Q 021796           59 ECPVCLNLMYPP-IYQCPNGHTLCSSCKARVRTGCP--TCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKL  135 (307)
Q Consensus        59 ~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~~~~CP--~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~  135 (307)
                      .||+|...+... ++.  .  .+-..=+..+...||  .|...+....-...++...-..++|+    ||.+.+.+.++.
T Consensus        55 ~CP~Cr~~~~~~~~~~--~--~~~~~~i~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~  126 (170)
T 3hcs_A           55 KCPVDNEILLENQLFP--D--NFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHIN  126 (170)
T ss_dssp             BCTTTCCBCCGGGCEE--C--HHHHHHHHTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHH
T ss_pred             CCCCCccCcchhhhhh--h--HHHHHHHhhcccCCCCCCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHH
Confidence            899998877643 121  0  110011112235675  56655443333344455566678887    799999999999


Q ss_pred             HHH-HhCCCcCccCCCCCCCCccccChhhHHHHhhc
Q 021796          136 KHE-KNCNYRPYNCPYAGAECSVTGDIPLLVRHLKN  170 (307)
Q Consensus       136 ~He-~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~  170 (307)
                      .|+ ..|++++..|++    |+......+|..|...
T Consensus       127 ~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~  158 (170)
T 3hcs_A          127 IHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN  158 (170)
T ss_dssp             HHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred             HHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence            998 599999999996    9899999999999854

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.31  E-value=0.00016  Score=54.77  Aligned_cols=44  Identities=23%  Similarity=0.407  Sum_probs=34.8

Q ss_pred             eeccccCCCCCCeeecCCCceechhchhhh----cCCCCCCcccCCcc
Q 021796           59 ECPVCLNLMYPPIYQCPNGHTLCSSCKARV----RTGCPTCRHELGNI  102 (307)
Q Consensus        59 ~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~----~~~CP~Cr~~~~~~  102 (307)
                      -|+.|..+++.=...=+|.|.||..|...+    .+.||.|+.++...
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            589999988754333389999999999765    26899999998763

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.30  E-value=3.4e-05  Score=60.75  Aligned_cols=45  Identities=20%  Similarity=0.289  Sum_probs=0.4

Q ss_pred             eeeeccccCCCCCCe-----------------eecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           57 LLECPVCLNLMYPPI-----------------YQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi-----------------~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +-.|+||++.+..+-                 ...+|+|.|+..|+.+|.   ..||.||.++..
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            357999999997642                 223799999999999984   789999998643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.58  E-value=0.0018  Score=47.23  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             CCeeeeccccCCC--CCCeeecCCC-----ceechhchhhhc-----CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLM--YPPIYQCPNG-----HTLCSSCKARVR-----TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l--~~Pi~~C~cG-----H~~C~~C~~~~~-----~~CP~Cr~~~~~  101 (307)
                      .+...|+||++.+  ..++.. +|.     |.|...|+.+|.     ..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3455899999876  356544 554     999999999994     489999998754

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.51  E-value=0.00034  Score=50.17  Aligned_cols=50  Identities=20%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             cccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhcc
Q 021796          114 LELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKND  171 (307)
Q Consensus       114 l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~  171 (307)
                      -.+.|++    |...+...++..|+..|..+|+.|+.    |+....+.+|..|++..
T Consensus        16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c   65 (75)
T 2d9k_A           16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVC   65 (75)
T ss_dssp             CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHB
T ss_pred             cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHc
Confidence            3567775    88999999999999999999999997    77777889999998753

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=96.49  E-value=0.00073  Score=48.50  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=33.0

Q ss_pred             HhhccccccccccCCcceeecccchHHHHHhCCCcCccCCC
Q 021796          110 VAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPY  150 (307)
Q Consensus       110 ~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~  150 (307)
                      ......+.|++    |...+.+.++..|+++|+..++.||.
T Consensus        39 ~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~~   75 (76)
T 2yuc_A           39 DCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPSS   75 (76)
T ss_dssp             SCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCSC
T ss_pred             hCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCCC
Confidence            45566788988    99999999999999999999999986

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.31  E-value=0.0074  Score=43.30  Aligned_cols=46  Identities=22%  Similarity=0.545  Sum_probs=37.6

Q ss_pred             CCeeeeccccCCCCCCeeec-CCCceechhchhhhc-----CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQC-PNGHTLCSSCKARVR-----TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C-~cGH~~C~~C~~~~~-----~~CP~Cr~~~~~  101 (307)
                      ...-.|.||.+++.+- ..| .|+|.|=..|+.+|.     ..||.|+.+...
T Consensus        13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            4556899999999854 567 699999999999883     679999998654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.10  E-value=0.002  Score=59.47  Aligned_cols=47  Identities=23%  Similarity=0.568  Sum_probs=39.0

Q ss_pred             CCeeeeccccCCCCC----Ceeec---CCCceechhchhhhc--------------CCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYP----PIYQC---PNGHTLCSSCKARVR--------------TGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~----Pi~~C---~cGH~~C~~C~~~~~--------------~~CP~Cr~~~~~  101 (307)
                      ....+|+||+..+.+    |-..|   .|||.|-..|+.+|.              +.||+|+.+++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            456789999999876    76777   499999999999883              469999998763

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.34  E-value=0.02  Score=43.11  Aligned_cols=33  Identities=18%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             CeeeeccccC-CCCCCeeec-CCCceechhchhhh
Q 021796           56 ELLECPVCLN-LMYPPIYQC-PNGHTLCSSCKARV   88 (307)
Q Consensus        56 ~~l~CpiC~~-~l~~Pi~~C-~cGH~~C~~C~~~~   88 (307)
                      +.+.|++|.+ +..+|+..| .|+|.||..|+...
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4578999996 478888865 69999999999873

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.94  E-value=0.64  Score=33.45  Aligned_cols=72  Identities=22%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             CCeeeeccccCCCCCC-eeecC--CCceechhchhhhcCCCCCCcccCCcccchhHHHHhhccccccccccCCcceeecc
Q 021796           55 HELLECPVCLNLMYPP-IYQCP--NGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPY  131 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~P-i~~C~--cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~  131 (307)
                      ...|.|.+|.+-|.+- ..||+  -+|.||..|....                  +++.-....|+||-   |       
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s------------------Ik~q~~~~EvyCPS---G-------   64 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES------------------IKAQGATGEVYCPS---G-------   64 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH------------------HHHHHSSSCCCCTT---S-------
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHH------------------HHhcCCCCcEECCC---C-------
Confidence            5678999999999876 66886  5899999996543                  23344556778874   2       


Q ss_pred             cchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHh
Q 021796          132 YSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHL  168 (307)
Q Consensus       132 ~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl  168 (307)
                                    .+||..|..=.|.....++..=|
T Consensus        65 --------------~kCpL~gS~~PWAFmqgEIatIL   87 (93)
T 2cs3_A           65 --------------EKCPLVGSNVPWAFMQGEIATIL   87 (93)
T ss_dssp             --------------SCCBCSSSSSBCCCCHHHHHHHH
T ss_pred             --------------CccccCCCcCchHHHhhHHHHHh
Confidence                          35777777777777766665443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.83  E-value=0.12  Score=34.86  Aligned_cols=51  Identities=31%  Similarity=0.645  Sum_probs=37.0

Q ss_pred             ccccccccCCcceeecccchHHHHHhCCCcCccCC-CCCCCCcccc-ChhhHHHHhhccCC
Q 021796          115 ELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCP-YAGAECSVTG-DIPLLVRHLKNDHK  173 (307)
Q Consensus       115 ~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp-~~g~~C~~~g-~~~~l~~Hl~~~H~  173 (307)
                      .+.|+.    |...+....+..|+..+.-+|+.|+ .    |+... .+..|..|++.+..
T Consensus        10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A           10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTSS
T ss_pred             Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhcc
Confidence            455654    7777776778899877888999998 5    66553 45689999876444

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.19  E-value=0.12  Score=36.49  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             CCCCCCcccCCcccchhHHHHhhccccccccccCCcceeecccchHHHHHhCCCcC
Q 021796           90 TGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRP  145 (307)
Q Consensus        90 ~~CP~Cr~~~~~~~~~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p  145 (307)
                      ..|+.|...+....-...+.......+.|++    |...+.+.++..|+..|+-.+
T Consensus        18 ~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           18 AVCQHCDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCGREG   69 (75)
T ss_dssp             EECSSSCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBTTBS
T ss_pred             cCCcccChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHccCCc
Confidence            4677887776532223334567778899997    999999999999999998654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=90.94  E-value=0.15  Score=34.75  Aligned_cols=45  Identities=18%  Similarity=0.329  Sum_probs=32.7

Q ss_pred             CeeeeccccCCCCCCe-eecCCCc---eechhchhhhc-----CCCCCCcccCC
Q 021796           56 ELLECPVCLNLMYPPI-YQCPNGH---TLCSSCKARVR-----TGCPTCRHELG  100 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi-~~C~cGH---~~C~~C~~~~~-----~~CP~Cr~~~~  100 (307)
                      +.-.|.||++...+|+ .-|.|.+   .|=..|+.+|.     ..||.|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4457999987655553 3356665   77788999883     67999998764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=89.99  E-value=0.14  Score=39.54  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=39.9

Q ss_pred             HHHHhhccccccccccCCcceeecccchH---HHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCC
Q 021796          107 LEKVAESLELPCRYQIWGCQDIFPYYSKL---KHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVD  175 (307)
Q Consensus       107 le~~~~~l~~~C~n~~~GC~~~~~~~~~~---~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~  175 (307)
                      +.+.+..-...||.    |...+...++.   .=++.=.-..+.||+.|  |+|.+.+.++.+|++..+...
T Consensus        45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~g--C~~~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEG--CLHKMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTT--CCCEEEGGGSGGGTSSSCC--
T ss_pred             HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCC--CCCEEeeHHHHHHHHHchhhh
Confidence            44444444447886    77666554321   11122223678899854  999999999999998877743

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=89.72  E-value=0.58  Score=33.44  Aligned_cols=52  Identities=23%  Similarity=0.326  Sum_probs=35.3

Q ss_pred             ccccccccCCcceeecc-cchHHHHHhCCC---cCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796          115 ELPCRYQIWGCQDIFPY-YSKLKHEKNCNY---RPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV  174 (307)
Q Consensus       115 ~~~C~n~~~GC~~~~~~-~~~~~He~~C~~---~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~  174 (307)
                      .+.|+.    |...+.. ..+..|...-.-   .++.|+.    |+... ....|..|++..|..
T Consensus        35 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           35 PYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence            355654    6666654 356678765433   7899987    66554 457999999988874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.49  E-value=0.45  Score=35.12  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=26.1

Q ss_pred             chHHHHHhCCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796          133 SKLKHEKNCNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV  174 (307)
Q Consensus       133 ~~~~He~~C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~  174 (307)
                      .+..|...-.-+|+.|+.    |+.... ...|..|++..|..
T Consensus        57 ~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           57 LKQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             HHHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred             HHHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence            345565444557888986    666554 57899999877764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=88.16  E-value=0.37  Score=36.81  Aligned_cols=75  Identities=16%  Similarity=0.311  Sum_probs=47.0

Q ss_pred             CCCCCCcccCCc---ccc------hhHHHHhhccccccccccCCcceeecccchH----HHHHhCCCcCccCCCCCCCCc
Q 021796           90 TGCPTCRHELGN---IRC------LALEKVAESLELPCRYQIWGCQDIFPYYSKL----KHEKNCNYRPYNCPYAGAECS  156 (307)
Q Consensus        90 ~~CP~Cr~~~~~---~~~------~~le~~~~~l~~~C~n~~~GC~~~~~~~~~~----~He~~C~~~p~~Cp~~g~~C~  156 (307)
                      ..||.|...+..   .++      .-+.+.+......||.    |...+...++.    .-.+.=.-..+.||+.|  |+
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~g--C~   97 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQD--CN   97 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTT--CC
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCC--Cc
Confidence            568888776543   111      2344555544567886    77766554422    11222233567899864  99


Q ss_pred             cccChhhHHHHhhc
Q 021796          157 VTGDIPLLVRHLKN  170 (307)
Q Consensus       157 ~~g~~~~l~~Hl~~  170 (307)
                      |.+.+.++..|++.
T Consensus        98 ~~~~~~~~~~H~~~  111 (116)
T 1rmd_A           98 EEVSLEKYNHHVSS  111 (116)
T ss_dssp             CEEEHHHHHHHHHT
T ss_pred             chhhHhHHHHHHHH
Confidence            99999999999975

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.86  E-value=1  Score=33.66  Aligned_cols=108  Identities=21%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCcccchhHHHH-----hhccccccccccCCcceee
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKV-----AESLELPCRYQIWGCQDIF  129 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~~~~~~le~~-----~~~l~~~C~n~~~GC~~~~  129 (307)
                      ...+.|++|...+......  -.|.-  .-.......|+.|...+.....+..-..     .....+.|+.    |...+
T Consensus         5 ~~~~~C~~C~~~f~~~~~l--~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f   76 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYL--KVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF   76 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHH--HHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred             CCCCCCCCCCCcCCCHHHH--HHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence            3457899999888765211  12321  0000112679999887765433322111     1234567775    88877


Q ss_pred             ccc-chHHHHHh-CCCcCccCCCCCCCCccccC-hhhHHHHhhccCCC
Q 021796          130 PYY-SKLKHEKN-CNYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKV  174 (307)
Q Consensus       130 ~~~-~~~~He~~-C~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~  174 (307)
                      ... .+..|... -.-.|+.|+.    |+.... ...|..|++..|..
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence            764 56788764 4567899987    666544 57999999988874

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=85.01  E-value=0.47  Score=32.22  Aligned_cols=37  Identities=24%  Similarity=0.714  Sum_probs=28.6

Q ss_pred             eeccccCCCCCC-eeecC-CCceechhchh---hhcCCCCCC
Q 021796           59 ECPVCLNLMYPP-IYQCP-NGHTLCSSCKA---RVRTGCPTC   95 (307)
Q Consensus        59 ~CpiC~~~l~~P-i~~C~-cGH~~C~~C~~---~~~~~CP~C   95 (307)
                      .|-.|...+.+. +++|+ |++.||..|-.   +.+..||.|
T Consensus        17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence            488999988655 47885 99999999943   234789988

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.79  E-value=2  Score=30.49  Aligned_cols=52  Identities=23%  Similarity=0.427  Sum_probs=34.3

Q ss_pred             ccccccccCCcceeecc-cchHHHHHhC-CCcCccCCCCCCCCcccc-ChhhHHHHhhccCCC
Q 021796          115 ELPCRYQIWGCQDIFPY-YSKLKHEKNC-NYRPYNCPYAGAECSVTG-DIPLLVRHLKNDHKV  174 (307)
Q Consensus       115 ~~~C~n~~~GC~~~~~~-~~~~~He~~C-~~~p~~Cp~~g~~C~~~g-~~~~l~~Hl~~~H~~  174 (307)
                      .+.|+.    |...+.. ..+..|...- .-.++.|+.    |+... ....|..|++..|..
T Consensus        36 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           36 PYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             SEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred             CEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence            355554    6666654 3566787643 456899987    66554 457999999876654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=83.36  E-value=0.81  Score=47.63  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=53.4

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCC-ceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNG-HTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cG-H~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      .+.++.|.|||=+++|++||.. +.| +++=...+.+|.   ..||.-|+++..   .+|.++...+..+.
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~  955 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK  955 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             cCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence            4567899999999999999988 676 689999999884   779999999876   68999988887764

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=83.20  E-value=1  Score=39.31  Aligned_cols=45  Identities=22%  Similarity=0.549  Sum_probs=36.8

Q ss_pred             CeeeeccccCCCCCCeeecC-CCceechhchhhhc-----CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMYPPIYQCP-NGHTLCSSCKARVR-----TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~~Pi~~C~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~~  101 (307)
                      ....|.+|.+++..- ..|+ |++.|=..|+.++.     ..||.|+.+...
T Consensus       179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            477899999999865 5676 89999999998862     589999987654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=83.18  E-value=0.41  Score=38.30  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=23.2

Q ss_pred             CcCccCCCCCCCCccccChhhHHH-HhhccC
Q 021796          143 YRPYNCPYAGAECSVTGDIPLLVR-HLKNDH  172 (307)
Q Consensus       143 ~~p~~Cp~~g~~C~~~g~~~~l~~-Hl~~~H  172 (307)
                      -..+.||+.  +|+|++.+.++.+ |+...+
T Consensus       102 ~L~v~Cpn~--GC~~~~~l~~l~~~H~~~~~  130 (141)
T 3knv_A          102 SLPAVCPSD--GCTWKGTLKEYESCHEGRCP  130 (141)
T ss_dssp             TSEEECCST--TCCCEEEHHHHHHHTTTCCH
T ss_pred             ccccccCCC--CCCCEeEHHHHHHHHHHHhH
Confidence            567899985  4999999999998 987644

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=80.88  E-value=3.2  Score=28.50  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCccc
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHE   98 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~   98 (307)
                      .-.|..|..-+.-+.++|.||.+||..=+..-.-.|+..-+.
T Consensus        15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~   56 (64)
T 1wg2_A           15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE   56 (64)
T ss_dssp             SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred             CCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence            357999999765545899999999987654333567655443

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=80.40  E-value=6  Score=27.92  Aligned_cols=43  Identities=16%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRH   97 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~   97 (307)
                      ...-.|..|...+.-+-+.|.||.+||+.=+..-.-.|+..-+
T Consensus        23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk   65 (74)
T 1wfp_A           23 STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK   65 (74)
T ss_dssp             CCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred             ccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchh
Confidence            3345799999877655589999999998665443355765444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	3e-63
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-08
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-04

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  196 bits (499), Expect = 3e-63
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 113 SLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDH 172
           S+  PC+Y   GC+   P+  K +HE+ C +RPY+CP  GA C   G +  ++ HL + H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 173 KVDMHDGSTFNHRYVKANALEIENATWMLTVFNCFGRHFCLHFEAFHLG-MAPVYMAFLR 231
           K  +      +  ++  +        W++ + +CFG HF L  E          + A ++
Sbjct: 61  K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 118

Query: 232 FMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRVRDSQDGLIIQRNLALFFSGG 291
            +G  ++A  F+Y LE+ G+ R+LTW+  PRSI +       + D L+   ++A  F+  
Sbjct: 119 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 176

Query: 292 DRQELKLKV 300
           +   L + V
Sbjct: 177 ENGNLGINV 185

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHEL 99
          + L C  C      P    P  HTLCS C       CP C+   
Sbjct: 5  QFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 59  ECPVCLNLMYPPIYQCPNGHTLCSSC---KARVRTGCPTCRHELGNIR 103
            CP+CL          P  H  C  C     R    CP C+  + ++ 
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSC------KARVRTGCPTCRHEL 99
          N + ++LECP+CL L+  P+      H  C  C      + +  + CP C++++
Sbjct: 16 NAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 53  DVHELLECPVCLNLMYPPIYQCPNGHTLCSSC-KARVRTGCPTCRHELGN---IRCLALE 108
            + +LL C  C N++  P+      H  CS+C    + TGCP C              L+
Sbjct: 18  RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLD 77

Query: 109 KVAESLE 115
            + +   
Sbjct: 78  SMIQLCS 84

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSC-----KARVRTGCPTCRHEL 99
             + + C +C +++  P+ +    H  C  C     K      CP+CR+  
Sbjct: 19 HFVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSY-CPSCRYPC 68

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 56 ELLECPVCLNLMYPPIYQCPNGHTLCSSC-----KARVRTGCPTCRHEL 99
              C +C           P GH +C+SC     ++  +  CP CR E+
Sbjct: 22 TFQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQG-CPFCRCEI 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	100.0
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.09
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.07
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.07
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.05
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.97
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.94
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.89
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.7
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.63
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.61
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.53
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.4
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.96
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.7
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.5
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.95
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	93.13
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	91.98
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.03
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	89.55
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	89.53
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	89.51
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.78
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.04
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	86.79
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.17
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	85.61
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	85.28
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	85.21
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	81.4
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	81.13

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-44  Score=307.37  Aligned_cols=189  Identities=28%  Similarity=0.576  Sum_probs=171.1

Q ss_pred             ccccccccccCCcceeecccchHHHHHhCCCcCccCCCCCCCCccccChhhHHHHhhccCCCCcccCceeEEEEeecccc
Q 021796          113 SLELPCRYQIWGCQDIFPYYSKLKHEKNCNYRPYNCPYAGAECSVTGDIPLLVRHLKNDHKVDMHDGSTFNHRYVKANAL  192 (307)
Q Consensus       113 ~l~~~C~n~~~GC~~~~~~~~~~~He~~C~~~p~~Cp~~g~~C~~~g~~~~l~~Hl~~~H~~~~~~g~~~~~~~~~~~~~  192 (307)
                      ++.+||+|+.+||+++++|.++..||+.|.|+|+.||.++.+|+|+|+.++|..|++.+|+.... ...++..|...+++
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~-~~~~~~~~~~~~~~   79 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT-LQGEDIVFLATDIN   79 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEE-EESSEEEEEECCTT
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccc-cCccceEEeeeccc
Confidence            46899999999999999999999999999999999999888999999999999999999995432 22344567777776


Q ss_pred             cccccceEEEEEeecCceEEEEEeeeeeC-CccEEEEEEEEeCChhhccCcEEEEEEecCCceEEEeeecceeecccccc
Q 021796          193 EIENATWMLTVFNCFGRHFCLHFEAFHLG-MAPVYMAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKRV  271 (307)
Q Consensus       193 ~~~~~~~~l~~~~~~~~~F~l~~~~~~~~-~~~~~~~~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~~si~~~~~~~  271 (307)
                      ......|+ +++.|||++|+|++++++++ ..++|+++++++|++++|++|+|+|++.+++|+|+|+++|+|++++....
T Consensus        80 ~~~~~~~v-~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~  158 (190)
T d1k2fa_          80 LPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATA  158 (190)
T ss_dssp             CTTCCEEE-EEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHH
T ss_pred             cccceeEE-EEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccc
Confidence            66667786 58999999999999998874 45899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeeEEcCcccceecCCCeEEEEEEEEEE
Q 021796          272 RDSQDGLIIQRNLALFFSGGDRQELKLKVAGR  303 (307)
Q Consensus       272 ~~~~d~l~i~~~~~~~~~~~~~~~l~~~i~~~  303 (307)
                      +++.|||+||+++|++|+++|+|.|+|+||++
T Consensus       159 ~~~~d~lvi~~~~~~~F~~~g~L~l~v~I~~~  190 (190)
T d1k2fa_         159 IMNSDCLVFDTSIAQLFAENGNLGINVTISMC  190 (190)
T ss_dssp             HHTTCSEEEEHHHHHHHCBTTBEEEEEEEEEC
T ss_pred             cCCCCEEEECHHHHhhcccCCcEEEEEEEEeC
Confidence            99999999999999999999999999999975

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.8e-11  Score=87.84  Aligned_cols=62  Identities=24%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      ++.+.|.||||+++|++|+.. +|||+||..|+.++.    ..||.|+.++..   .+|.+|.++++.+.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~-~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCccccCcCcCchhhhhccc-CCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHH
Confidence            567899999999999999877 999999999998873    579999999875   57899999988754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=3.2e-11  Score=87.06  Aligned_cols=61  Identities=23%  Similarity=0.416  Sum_probs=52.9

Q ss_pred             CCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc---ccchhHHHHhhcc
Q 021796           53 DVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN---IRCLALEKVAESL  114 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~~~~~le~~~~~l  114 (307)
                      ++.+.|.||||+++|.+||.. +|||+||..|+.++.    ..||.|+.++..   .+|.++.++++.+
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~   71 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             CCCccCCCcCcCchhhCceEc-cCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHH
Confidence            567899999999999999877 899999999998873    469999999875   5788888888765

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.7e-11  Score=91.14  Aligned_cols=64  Identities=25%  Similarity=0.504  Sum_probs=53.2

Q ss_pred             ccCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc-CCCCCCcccCCc---ccchhHHHHhhcc
Q 021796           51 NNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR-TGCPTCRHELGN---IRCLALEKVAESL  114 (307)
Q Consensus        51 ~~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~-~~CP~Cr~~~~~---~~~~~le~~~~~l  114 (307)
                      ...+.+.+.||||++++.+|+....|||+||..|+.++. ..||.||.++..   .+|..++++++.+
T Consensus        16 l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (97)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             HHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHH
Confidence            345567889999999999998655899999999999885 679999998764   5788888887754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.9e-11  Score=89.90  Aligned_cols=49  Identities=22%  Similarity=0.570  Sum_probs=42.3

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      +++.+.+.||||.+++.+|+.+ +|||+||..|+.++.    ..||.||.++..
T Consensus        18 ~d~~~~l~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             hhhccCcCCccCCcchhcceec-CCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            3445668999999999999887 999999999999873    579999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.6e-11  Score=79.26  Aligned_cols=46  Identities=30%  Similarity=0.585  Sum_probs=41.6

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcccCCc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGN  101 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~~~~  101 (307)
                      .+.|.|+||++.+.+|+.. +|||+||..|+.++...||.||+++..
T Consensus         4 ~~~l~C~IC~~~~~~p~~l-pCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCCCcccCcccCCCEEe-cCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            4568999999999999877 899999999999888899999998865

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.3e-11  Score=90.04  Aligned_cols=68  Identities=26%  Similarity=0.788  Sum_probs=52.4

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc------CCCCCCcccCCc---ccchhHHHHhhcc-cccccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR------TGCPTCRHELGN---IRCLALEKVAESL-ELPCRY  120 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~------~~CP~Cr~~~~~---~~~~~le~~~~~l-~~~C~n  120 (307)
                      ..+.+.|.||||++++.+|+.. +|||+||..|+.++.      ..||.||.++..   .+|..+.++++.+ ++.|..
T Consensus        16 ~~l~~~l~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~~   93 (103)
T d1jm7a_          16 NAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAF   93 (103)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHHH
T ss_pred             HhcccCcCCCccCchhCCeEEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHccc
Confidence            3446678999999999999876 899999999998763      479999998864   4566666666655 355543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.4e-10  Score=82.68  Aligned_cols=64  Identities=20%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             cCCCCeeeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc---ccchhHHHHhhccc
Q 021796           52 NDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN---IRCLALEKVAESLE  115 (307)
Q Consensus        52 ~~~~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~---~~~~~le~~~~~l~  115 (307)
                      .+..+.|.||||+++|.+||....|||.||..|+.++.   ..||.|+.++..   .+|.+|.+.+..+.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            45677899999999999998873345689999999983   789999999875   57888888887653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=3.4e-09  Score=71.20  Aligned_cols=44  Identities=11%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             eeeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      |.||||++++.+|+..-.|||+||..|+.++.   ..||.||+++..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            57999999999998764699999999999984   889999998864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.2e-09  Score=74.94  Aligned_cols=44  Identities=32%  Similarity=0.730  Sum_probs=38.5

Q ss_pred             eeeccccCCCCCCeeecCCCceechhchhhhc----CCCCCCcccCCcc
Q 021796           58 LECPVCLNLMYPPIYQCPNGHTLCSSCKARVR----TGCPTCRHELGNI  102 (307)
Q Consensus        58 l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~~  102 (307)
                      ..|+||++.+.+|+.. +|||.||..|+.+|.    +.||.||..+...
T Consensus        24 ~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCCEECS-SSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCCeEEe-CCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3699999999999887 899999999998873    5699999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.5e-09  Score=69.51  Aligned_cols=43  Identities=33%  Similarity=0.899  Sum_probs=35.3

Q ss_pred             eeeccccCCCCCC---eeecCCCceechhchhhhc----CCCCCCcccCC
Q 021796           58 LECPVCLNLMYPP---IYQCPNGHTLCSSCKARVR----TGCPTCRHELG  100 (307)
Q Consensus        58 l~CpiC~~~l~~P---i~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~  100 (307)
                      ++||||++.+...   +..++|||.||..|+.+|.    ..||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5899999988532   3456899999999999984    46999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.61  E-value=1.2e-08  Score=71.26  Aligned_cols=43  Identities=28%  Similarity=0.634  Sum_probs=37.7

Q ss_pred             eeccccCCCCCCeeecCCCceechhchhhhc---CCCCCCcccCCc
Q 021796           59 ECPVCLNLMYPPIYQCPNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        59 ~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      +||||++.+..|+..-+|||.||..|+.+|.   ..||.||.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            6999999998886655899999999999883   899999998764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.53  E-value=3.7e-08  Score=65.74  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=37.3

Q ss_pred             CCCeeeeccccCCCCCC--eeec-CCCceechhchhhhc---CCCCCCcccC
Q 021796           54 VHELLECPVCLNLMYPP--IYQC-PNGHTLCSSCKARVR---TGCPTCRHEL   99 (307)
Q Consensus        54 ~~~~l~CpiC~~~l~~P--i~~C-~cGH~~C~~C~~~~~---~~CP~Cr~~~   99 (307)
                      +++..+|+||++.+...  +.+. .|||.||..|+.+|.   +.||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            35567899999999753  4444 599999999999984   7899999876

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.7e-08  Score=68.77  Aligned_cols=46  Identities=33%  Similarity=0.676  Sum_probs=35.5

Q ss_pred             CeeeeccccCCCC-C---CeeecCCCceechhchhhhc----CCCCCCcccCCc
Q 021796           56 ELLECPVCLNLMY-P---PIYQCPNGHTLCSSCKARVR----TGCPTCRHELGN  101 (307)
Q Consensus        56 ~~l~CpiC~~~l~-~---Pi~~C~cGH~~C~~C~~~~~----~~CP~Cr~~~~~  101 (307)
                      ++..||||++.+. +   .+...+|||.||..|+.+|.    ..||.||+++..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4578999998642 2   23444899999999999883    579999998754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.9e-06  Score=65.65  Aligned_cols=44  Identities=18%  Similarity=0.465  Sum_probs=34.9

Q ss_pred             eeeccccCCCCCC-----------------eeecCCCceechhchhhhc--------CCCCCCcccCCc
Q 021796           58 LECPVCLNLMYPP-----------------IYQCPNGHTLCSSCKARVR--------TGCPTCRHELGN  101 (307)
Q Consensus        58 l~CpiC~~~l~~P-----------------i~~C~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~  101 (307)
                      -.|+||++.|..+                 +...+|||.||..|+.+|.        ..||.||..++.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            4799999988543                 2344799999999999884        269999998765

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.2e-06  Score=60.30  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CCCceechhchhhhc---CCCCCCcccCCc
Q 021796           75 PNGHTLCSSCKARVR---TGCPTCRHELGN  101 (307)
Q Consensus        75 ~cGH~~C~~C~~~~~---~~CP~Cr~~~~~  101 (307)
                      .|||.|+..|+.+|.   +.||+||.++..
T Consensus        56 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          56 VCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             TTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             cccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            699999999999994   889999998754

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.50  E-value=2.2e-05  Score=52.54  Aligned_cols=46  Identities=17%  Similarity=0.396  Sum_probs=35.9

Q ss_pred             CCeeeeccccCCCCCCeee-cC---CCceechhchhhhc-----CCCCCCcccCC
Q 021796           55 HELLECPVCLNLMYPPIYQ-CP---NGHTLCSSCKARVR-----TGCPTCRHELG  100 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~-C~---cGH~~C~~C~~~~~-----~~CP~Cr~~~~  100 (307)
                      ++...|+||++.+..+... |.   |+|.|+..|+.+|.     ..||.||.++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4566799999988766433 33   46999999999983     57999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00016  Score=52.55  Aligned_cols=32  Identities=16%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             eeeeccccCCCCCC--eeecCCCceechhchhhh
Q 021796           57 LLECPVCLNLMYPP--IYQCPNGHTLCSSCKARV   88 (307)
Q Consensus        57 ~l~CpiC~~~l~~P--i~~C~cGH~~C~~C~~~~   88 (307)
                      ...||||++.+...  +..-.|||.||..|+..+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~   38 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY   38 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHH
Confidence            45899999987531  222269999999999865

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.13  E-value=0.14  Score=34.75  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCccc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHE   98 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~~   98 (307)
                      ...-.|..|..-+.-..++|.||+.||...+....-.|+..-+.
T Consensus        23 ~kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~   66 (74)
T d1wfpa_          23 STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG   66 (74)
T ss_dssp             CCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred             CCCCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchh
Confidence            34568999998887667899999999998876555667665443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.058  Score=30.63  Aligned_cols=26  Identities=38%  Similarity=0.667  Sum_probs=21.1

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhhcc
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLKND  171 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~~~  171 (307)
                      +|+.|+++|  |++...+ ..|..|++..
T Consensus         2 rP~~C~~pg--C~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           2 RPYSCDHPG--CDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CSBCCCCTT--CCCCBSSSHHHHHHHGGG
T ss_pred             cCeECcCCC--CCCeeCCHHHHHHHhhhc
Confidence            689999976  9998775 7899997653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.03  E-value=0.047  Score=30.05  Aligned_cols=25  Identities=36%  Similarity=0.776  Sum_probs=19.9

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhhc
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLKN  170 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~~  170 (307)
                      +|+.|+++|  |++...+ .+|..|.+.
T Consensus         1 rPf~C~~~g--C~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDG--CNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTT--CCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCC--cCCcCCCHHHHHHHHhh
Confidence            589999976  9988765 788888764

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.55  E-value=0.49  Score=32.75  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CCeeeeccccCCCCCC-eeecCCCceechhchhhhcCCCCCCcc
Q 021796           55 HELLECPVCLNLMYPP-IYQCPNGHTLCSSCKARVRTGCPTCRH   97 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~P-i~~C~cGH~~C~~C~~~~~~~CP~Cr~   97 (307)
                      ...-.|.+|..-+.-- .++|.||+.||...+..-.-.|+..-.
T Consensus        23 ~~~~RC~~C~KKl~l~~~~~CrCg~~FC~~HR~pe~H~CtfDyK   66 (85)
T d1wffa_          23 KIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYK   66 (85)
T ss_dssp             CCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred             ccCCcChhcCCeecCCcCeecCCCCEehhhcCCCcCcCCCcchH
Confidence            3344799999988541 379999999999887655566776543

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.093  Score=33.91  Aligned_cols=39  Identities=23%  Similarity=0.635  Sum_probs=30.0

Q ss_pred             eeeeccccCCCCCC-eeecC-CCceechhchh---hhcCCCCCC
Q 021796           57 LLECPVCLNLMYPP-IYQCP-NGHTLCSSCKA---RVRTGCPTC   95 (307)
Q Consensus        57 ~l~CpiC~~~l~~P-i~~C~-cGH~~C~~C~~---~~~~~CP~C   95 (307)
                      ...|--|...+.+. +++|+ |++.||..|-.   +....||.|
T Consensus        15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            34788999888765 68885 99999999943   334789987

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.11  Score=29.10  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=20.1

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhhc
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLKN  170 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~~  170 (307)
                      +|+.||++|  |+....+ ..|..|++.
T Consensus         1 kpf~C~~~~--C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSY--CGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTT--CCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCC--CCcCcCChhHhhhhcCc
Confidence            589999865  9988764 789999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.78  E-value=0.1  Score=28.82  Aligned_cols=24  Identities=38%  Similarity=0.797  Sum_probs=19.3

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhh
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLK  169 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~  169 (307)
                      +|+.|+++|  |++...+ ..|..|.+
T Consensus         1 Kp~~C~~~g--C~k~F~~~~~L~~H~r   25 (29)
T d1a1ia1           1 RPYACPVES--CDRRFSRSADLTRHIR   25 (29)
T ss_dssp             CCEECCSTT--CCCEESSHHHHHHHTH
T ss_pred             CCeECCCCC--CCcEECchhHhhhhcC
Confidence            589999976  9988764 78888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.16  Score=28.29  Aligned_cols=25  Identities=28%  Similarity=0.661  Sum_probs=19.7

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhhc
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLKN  170 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~~  170 (307)
                      +|+.|++.|  |++...+ ..|..|++.
T Consensus         1 kp~~C~~~g--Cgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           1 KPHKCTFEG--CRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCCSTT--CCCCCSSHHHHHHHHHH
T ss_pred             CCeeCCCCC--CCceECChhHhhhhcCc
Confidence            589999965  9988764 788999763

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=1.1  Score=29.65  Aligned_cols=31  Identities=29%  Similarity=0.763  Sum_probs=25.7

Q ss_pred             eeeeccccCCCCCC-eeecC--CCceechhchhh
Q 021796           57 LLECPVCLNLMYPP-IYQCP--NGHTLCSSCKAR   87 (307)
Q Consensus        57 ~l~CpiC~~~l~~P-i~~C~--cGH~~C~~C~~~   87 (307)
                      .+.|.+|.+-|.+- ..||+  -+|-||-.|-..
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~   41 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE   41 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHH
Confidence            48999999999876 66886  589999999654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.17  E-value=0.19  Score=27.88  Aligned_cols=25  Identities=24%  Similarity=0.669  Sum_probs=19.8

Q ss_pred             cCccCCCCCCCCccccCh-hhHHHHhhc
Q 021796          144 RPYNCPYAGAECSVTGDI-PLLVRHLKN  170 (307)
Q Consensus       144 ~p~~Cp~~g~~C~~~g~~-~~l~~Hl~~  170 (307)
                      +|+.|++.|  |++.... ..|..|++.
T Consensus         1 kp~~C~~~g--Cgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           1 KPFQCTFEG--CGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CCEECCSTT--CCCEESCHHHHHHHHHH
T ss_pred             CCccCCCCC--CCceECcHHHcCccccc
Confidence            589999965  9988764 789999863

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.61  E-value=0.61  Score=31.38  Aligned_cols=39  Identities=18%  Similarity=0.424  Sum_probs=28.0

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCC
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTC   95 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~C   95 (307)
                      .-.|.+|..-+.---++|.||..||...+..-...|...
T Consensus        25 ~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfD   63 (74)
T d1wfla_          25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYD   63 (74)
T ss_dssp             TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCC
T ss_pred             CCcChhhCCcccceeeEccCCCEehhhcCCCcCcCCCCc
Confidence            348999997764323789999999998765444566654

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=0.073  Score=35.65  Aligned_cols=39  Identities=36%  Similarity=0.885  Sum_probs=29.9

Q ss_pred             eeeeccccCCCCCCeeecCCCceechhchhhh--cCCCCCCcccCC
Q 021796           57 LLECPVCLNLMYPPIYQCPNGHTLCSSCKARV--RTGCPTCRHELG  100 (307)
Q Consensus        57 ~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~--~~~CP~Cr~~~~  100 (307)
                      .+.||.|...|..     ..||..|..|-...  ...||.|.+++.
T Consensus         2 ~~~CP~C~~eL~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             CCcCCCccCcccc-----cCCCEehhhhhhhheeEEeCCccccHHH
Confidence            4689999998653     35788999997654  378999999865

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.21  E-value=0.96  Score=29.47  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             CCeeeeccccCCCCCCeeecCCCceechhchhhhcCCCCCCcc
Q 021796           55 HELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRH   97 (307)
Q Consensus        55 ~~~l~CpiC~~~l~~Pi~~C~cGH~~C~~C~~~~~~~CP~Cr~   97 (307)
                      ...-.|..|..-+.---++|.||+.||..-+..-.-.|+..-+
T Consensus        13 ~k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK   55 (64)
T d1wfha_          13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK   55 (64)
T ss_dssp             SSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred             CCCCcChhhCCCccceeeeccCCCEehhhcCCCcCcCCCCcch
Confidence            3345899999887543379999999999886554456765543

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.40  E-value=0.57  Score=29.08  Aligned_cols=32  Identities=38%  Similarity=0.650  Sum_probs=26.4

Q ss_pred             CCcCccCCCCCCCCccccC-hhhHHHHhhccCCCC
Q 021796          142 NYRPYNCPYAGAECSVTGD-IPLLVRHLKNDHKVD  175 (307)
Q Consensus       142 ~~~p~~Cp~~g~~C~~~g~-~~~l~~Hl~~~H~~~  175 (307)
                      +|+||.|-..|  |..... ..+|.-|.+..|+..
T Consensus        17 pyrpyrcvhqg--c~aaftiq~nlilhy~avh~s~   49 (61)
T d1x3ca1          17 PYRPYRCVHQG--CFAAFTIQQNLILHYQAVHKSD   49 (61)
T ss_dssp             SSCSCBCCSTT--CCCBCSSHHHHHHHHHHHSSSC
T ss_pred             CCCceeeeccc--hhhhhhhhhhHHHHHHHHhhhc
Confidence            78999999976  766554 479999999999864

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=0.54  Score=31.41  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             CCCCeeeeccccCCCC----CCeeec-CCCceechhchhhh
Q 021796           53 DVHELLECPVCLNLMY----PPIYQC-PNGHTLCSSCKARV   88 (307)
Q Consensus        53 ~~~~~l~CpiC~~~l~----~Pi~~C-~cGH~~C~~C~~~~   88 (307)
                      ...+..-||-|...+.    .+.++| .||+.||..|...+
T Consensus        14 ~~~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w   54 (73)
T d2ct7a1          14 RDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW   54 (73)
T ss_dssp             SCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred             HCCCCCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcch
Confidence            3355667999988753    345677 78999998887765