Citrus Sinensis ID: 021836
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 307 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.667 | 0.742 | 0.653 | 2e-82 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.677 | 0.677 | 0.521 | 5e-72 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.677 | 0.677 | 0.517 | 8e-71 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.566 | 0.776 | 0.385 | 2e-37 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.566 | 0.776 | 0.385 | 2e-37 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.550 | 0.757 | 0.407 | 3e-37 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.563 | 0.775 | 0.375 | 8e-37 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.563 | 0.775 | 0.385 | 2e-35 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.563 | 0.775 | 0.390 | 3e-35 | |
| Q2T9N3 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.563 | 0.775 | 0.395 | 4e-35 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/234 (65%), Positives = 176/234 (75%), Gaps = 29/234 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADF 247
PV+ FLDAARE+LA + HKATNFFCVPLQ +F
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQ-----------------------EF 152
Query: 248 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
TP GRYDVIWVQWCIGHLTD+DFVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 153 TPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 206
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 170/261 (65%), Gaps = 53/261 (20%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
LQ DFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+
Sbjct: 179 LQ-----------------------DFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKI 215
Query: 281 GLKPGGFFVLKENIARSGTFL 301
GLKP GFFVLKENIAR+G L
Sbjct: 216 GLKPNGFFVLKENIARNGFVL 236
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/261 (51%), Positives = 167/261 (63%), Gaps = 53/261 (20%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
LQ DFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+
Sbjct: 179 LQ-----------------------DFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKI 215
Query: 281 GLKPGGFFVLKENIARSGTFL 301
GLKP GFFVLKENIAR+G L
Sbjct: 216 GLKPNGFFVLKENIARNGFVL 236
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 31/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ +F+PE RYDVIW+QW IGHLTD+ V F K
Sbjct: 116 FCCGLQ-----------------------EFSPEPNRYDVIWIQWVIGHLTDEHLVDFLK 152
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R +GL+P G V+K+N+ + + +
Sbjct: 153 RCSLGLRPNGIIVIKDNVTQDVSIM 177
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 116/205 (56%), Gaps = 31/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ +F+PE RYDVIW+QW IGHLTD+ V+F +
Sbjct: 116 FCCGLQ-----------------------EFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQ 152
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R ++GL+P G V+K+N+ + + +
Sbjct: 153 RCRLGLRPNGIIVIKDNVTQDASIM 177
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 109/201 (54%), Gaps = 32/201 (15%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 279
LQ DF P+ RYDVIW+QW IGHLTDD V F +R +
Sbjct: 118 GLQ-----------------------DFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCR 154
Query: 280 VGLKPGGFFVLKENIARSGTF 300
GL+P G V+K+N+A G
Sbjct: 155 SGLRPEGLIVVKDNVAYEGVI 175
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 117/205 (57%), Gaps = 32/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ +F+PE RYDVIW+QW IGHLTD+ VSF +
Sbjct: 115 FCCGLQ-----------------------EFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQ 151
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R K+GL+P G ++K+N+ + G+ +
Sbjct: 152 RCKLGLRPNGIILIKDNVTQDGSIM 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 32/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ DF+PE G YDVIW+QW IGHLTD F +
Sbjct: 115 FCCGLQ-----------------------DFSPEPGSYDVIWIQWVIGHLTDQHLAEFLR 151
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R K GL+P G V+K+N+A+ G L
Sbjct: 152 RCKRGLRPNGIIVIKDNMAQEGVIL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 109/205 (53%), Gaps = 32/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ DFTPE YDVIW+QW IGHLTD F +
Sbjct: 115 FCCGLQ-----------------------DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLR 151
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R K L+P G V+K+N+A+ G L
Sbjct: 152 RCKGSLRPNGIIVIKDNMAQEGVIL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 110/205 (53%), Gaps = 32/205 (15%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N
Sbjct: 4 EVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NF
Sbjct: 63 SY--ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNF 114
Query: 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFK 276
FC LQ DF+PE YDVIW+QW IGHLTD F +
Sbjct: 115 FCCGLQ-----------------------DFSPEPQSYDVIWIQWVIGHLTDQHLAEFLR 151
Query: 277 RAKVGLKPGGFFVLKENIARSGTFL 301
R K GL+P G V+K+N+A+ G L
Sbjct: 152 RCKRGLRPNGIIVIKDNMAQEGVIL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 307 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.671 | 0.746 | 0.712 | 5e-91 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.671 | 0.746 | 0.678 | 6e-88 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.778 | 0.711 | 0.606 | 2e-87 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.671 | 0.741 | 0.663 | 1e-83 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.671 | 0.749 | 0.652 | 3e-83 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.680 | 0.623 | 0.648 | 1e-82 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.677 | 0.622 | 0.649 | 9e-82 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.667 | 0.742 | 0.653 | 1e-80 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.671 | 0.591 | 0.626 | 6e-80 | |
| 242032801 | 304 | hypothetical protein SORBIDRAFT_01g00629 | 0.677 | 0.684 | 0.542 | 3e-72 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/233 (71%), Positives = 183/233 (78%), Gaps = 27/233 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ +FT
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQ-----------------------EFT 153
Query: 249 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
P+ G YDVIWVQWCIGHLTDDDFVSFF RAK+GLKPGGFFVLKEN+AR+G L
Sbjct: 154 PDAGHYDVIWVQWCIGHLTDDDFVSFFMRAKIGLKPGGFFVLKENVARNGFVL 206
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 158/233 (67%), Positives = 182/233 (78%), Gaps = 27/233 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ +FT
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQ-----------------------EFT 153
Query: 249 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
P+ GRYDVIWVQWCIGHLTDDDFVSFF RAK+GLKPGGFFVLKEN+ARSG L
Sbjct: 154 PDAGRYDVIWVQWCIGHLTDDDFVSFFNRAKIGLKPGGFFVLKENLARSGFVL 206
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/267 (60%), Positives = 191/267 (71%), Gaps = 28/267 (10%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSF 274
NF+CVPLQ DFTP+T RYDVIW+QWCIGHLTD+DFVSF
Sbjct: 203 NFYCVPLQ-----------------------DFTPDTARYDVIWIQWCIGHLTDEDFVSF 239
Query: 275 FKRAKVGLKPGGFFVLKENIARSGTFL 301
FKRAKVGLKPGGFFVLKENIARSG L
Sbjct: 240 FKRAKVGLKPGGFFVLKENIARSGFVL 266
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/235 (66%), Positives = 175/235 (74%), Gaps = 29/235 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISAD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQ D
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQ-----------------------D 153
Query: 247 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
FTP+T RYDVIW+QWCIGHLTD+DFVSFFK AKVGLK GGFFVLKENIARSG L
Sbjct: 154 FTPDTARYDVIWIQWCIGHLTDEDFVSFFKSAKVGLKAGGFFVLKENIARSGFVL 208
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/233 (65%), Positives = 179/233 (76%), Gaps = 27/233 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ +FT
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQ-----------------------EFT 153
Query: 249 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
P+ GRYDVIWVQWCIGHLTD+DF+SFFKRAK+GLK GG F+LKENIARSG L
Sbjct: 154 PDAGRYDVIWVQWCIGHLTDEDFISFFKRAKLGLKAGGIFILKENIARSGFVL 206
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/236 (64%), Positives = 178/236 (75%), Gaps = 27/236 (11%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISA 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQ----------------------- 209
Query: 246 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
+FTP GRYDVIWVQWCIGHLTD+DFVSFF AK LKPGGFFV+KEN+A+ G L
Sbjct: 210 EFTPAAGRYDVIWVQWCIGHLTDNDFVSFFNCAKGCLKPGGFFVVKENLAKKGFVL 265
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/237 (64%), Positives = 179/237 (75%), Gaps = 29/237 (12%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGIS 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQ---------------------- 208
Query: 245 ADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
+FTP GRYDVIWVQWCIGHLTD+DFVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 209 -EFTPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 264
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/234 (65%), Positives = 176/234 (75%), Gaps = 29/234 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADF 247
PV+ FLDAARE+LA + HKATNFFCVPLQ +F
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQ-----------------------EF 152
Query: 248 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
TP GRYDVIWVQWCIGHLTD+DFVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 153 TPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 206
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 146/233 (62%), Positives = 173/233 (74%), Gaps = 27/233 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT 248
VSHFL+AARE+L + DMHKA NF+CVPLQ DFT
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQ-----------------------DFT 153
Query: 249 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
P+ GRYDVIW+QWCIGHLTDDDF++FFKRAKVGLKPGG FVLKENIARSG L
Sbjct: 154 PDVGRYDVIWIQWCIGHLTDDDFITFFKRAKVGLKPGGLFVLKENIARSGFVL 206
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032801|ref|XP_002463795.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] gi|241917649|gb|EER90793.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 170/258 (65%), Gaps = 50/258 (19%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIG-------------------------EDGEQQEKKT 103
M+ G DS G+ F +A EMW E++G E+G K+
Sbjct: 1 MDSRGFDSAGRVFSSATEMWAEELGSSATASTTAEAASPATATEGSGGASEEGAGDGKRK 60
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL+DRF A+ +HLVALD
Sbjct: 61 EWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLADRFGTAK--RHLVALD 118
Query: 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQG 223
CGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AARESL D HKA NF+CVPLQ
Sbjct: 119 CGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAARESLTGYMDQGEDSHKAANFYCVPLQ- 177
Query: 224 QREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK 283
DFTPE G+YDVIW+QWCIG L DDDF+SFF RAKVGLK
Sbjct: 178 ----------------------DFTPEEGKYDVIWIQWCIGQLPDDDFISFFNRAKVGLK 215
Query: 284 PGGFFVLKENIARSGTFL 301
P GFFVLKENIAR+G L
Sbjct: 216 PDGFFVLKENIARNGFVL 233
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 307 | ||||||
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.384 | 0.526 | 0.404 | 4.5e-38 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.384 | 0.526 | 0.412 | 4.5e-38 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.371 | 0.511 | 0.422 | 1.9e-37 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.381 | 0.524 | 0.380 | 2.4e-37 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.371 | 0.511 | 0.414 | 1.3e-36 | |
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.459 | 0.522 | 0.379 | 4.4e-36 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.371 | 0.511 | 0.382 | 4.4e-36 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.371 | 0.511 | 0.406 | 5.7e-36 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.371 | 0.511 | 0.398 | 7.2e-36 | |
| UNIPROTKB|Q2T9N3 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.371 | 0.511 | 0.406 | 9.2e-36 |
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 51/126 (40%), Positives = 74/126 (58%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQ 222
FC LQ
Sbjct: 116 FCCGLQ 121
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 52/126 (41%), Positives = 74/126 (58%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQ 222
FC LQ
Sbjct: 116 FCCGLQ 121
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 52/123 (42%), Positives = 71/123 (57%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 48/126 (38%), Positives = 74/126 (58%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQ 222
FC LQ
Sbjct: 115 FCCGLQ 120
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 51/123 (41%), Positives = 72/123 (58%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222
FLD A+ +N D ++ N++ V LQ
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQ 166
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 47/123 (38%), Positives = 70/123 (56%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 50/123 (40%), Positives = 70/123 (56%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
| UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 50/123 (40%), Positives = 71/123 (57%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQ 222
LQ
Sbjct: 118 GLQ 120
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00111342 | hypothetical protein (276 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.V.3607.1 | phosphoserine transaminase (EC-2.6.1.52) (378 aa) | • | 0.411 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 307 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 5e-90 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-05 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.003 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.003 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 5e-90
Identities = 102/201 (50%), Positives = 132/201 (65%), Gaps = 31/201 (15%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
LQ DFTPE GRYD+IW+QWCIGHLTD+D V+F KR K
Sbjct: 113 LQ-----------------------DFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKG 149
Query: 281 GLKPGGFFVLKENIARSGTFL 301
GLKP GF V+KEN+A++G
Sbjct: 150 GLKPNGFIVVKENVAQNGFVF 170
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 29/149 (19%), Positives = 41/149 (27%), Gaps = 42/149 (28%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + L
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGML----A 72
Query: 206 MAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIW----VQW 261
A F + G EK E +D+I +QW
Sbjct: 73 QAKTKLSENVQF---ICGDAEKLP-------------------LEDSSFDLIVSNLALQW 110
Query: 262 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
C DD LKPGG
Sbjct: 111 C------DDLSQALSELARVLKPGGLLAF 133
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 37/129 (28%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 281
+DV+ + HL D +
Sbjct: 54 ----------------------------PDESFDVVVSSLVLHHL--PDPERALREIARV 83
Query: 282 LKPGGFFVL 290
LKPGG V+
Sbjct: 84 LKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 29/130 (22%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + L V ++ L+ AR++ A
Sbjct: 3 LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA---------------- 46
Query: 222 QGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 281
V++ K +DVI + HL +D F + A+
Sbjct: 47 ------------DNVEVLKGDAEELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRL 93
Query: 282 LKPGGFFVLK 291
LKPGG VL
Sbjct: 94 LKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 307 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.96 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.72 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.7 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.68 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.67 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.67 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.65 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.6 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.59 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.58 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.58 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.58 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.57 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.57 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.56 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.56 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.56 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.54 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.54 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.53 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.53 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.52 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.51 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.5 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.5 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.5 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.5 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.48 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.48 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.47 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.46 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.45 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.44 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.44 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.43 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.43 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.42 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.42 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.41 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.41 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.4 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.4 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.39 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.38 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.37 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.36 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.35 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.34 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.33 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.32 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.32 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.31 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.29 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.29 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.29 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.28 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.28 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.27 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.27 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.26 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.26 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.25 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.25 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.23 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.23 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.2 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.2 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.2 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.18 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.17 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.17 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.15 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.15 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.15 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.15 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.14 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.14 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.14 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.14 | |
| PLN02476 | 278 | O-methyltransferase | 99.13 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.13 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.12 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.12 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.11 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.11 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.11 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.1 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.09 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.09 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.07 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.07 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.06 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.05 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.05 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.05 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.01 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.99 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.97 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.97 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.96 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.95 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.95 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.94 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.94 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.94 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.93 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PLN02366 | 308 | spermidine synthase | 98.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.93 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.92 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.91 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.91 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.9 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.89 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.89 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.87 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.86 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.84 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.82 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.78 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.77 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.73 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.71 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.69 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.68 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.66 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.66 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.64 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.62 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.58 | |
| PLN02823 | 336 | spermine synthase | 98.57 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.57 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.56 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.53 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.53 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.51 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.5 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.49 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.49 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.46 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.44 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.43 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.43 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.43 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.41 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.4 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.36 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.35 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.34 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.32 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.3 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.3 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.25 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.24 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.22 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.22 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.21 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.21 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.19 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.15 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.12 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.11 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.1 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.1 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.07 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.06 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.05 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.04 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.04 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.99 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.96 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.95 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.91 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.81 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.78 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.78 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.76 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.71 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.67 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.62 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.56 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.55 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.54 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.52 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.49 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.49 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.45 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.45 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.42 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.41 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.35 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.26 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.24 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.24 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.21 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.16 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.14 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.13 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.1 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.1 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.05 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.02 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.97 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.91 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.9 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.89 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.79 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.62 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.51 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.43 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.41 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.39 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.39 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.16 | |
| PHA01634 | 156 | hypothetical protein | 96.01 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.99 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 95.95 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.82 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.76 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.74 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.38 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.27 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.27 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.03 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.94 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.88 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.81 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.67 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 94.49 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.49 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.44 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.33 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.14 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.95 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.91 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.87 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.87 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.19 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.05 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.01 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 92.84 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.78 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.68 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.52 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 92.43 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 91.31 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 90.96 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 90.86 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.81 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 90.7 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.16 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.06 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.75 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 88.77 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 88.66 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 88.64 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.1 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 87.89 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 87.89 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.57 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 87.48 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 86.79 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 86.78 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 86.67 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 86.5 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 86.37 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 86.13 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.11 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.01 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.5 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 85.5 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 85.28 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 85.1 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 85.02 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.98 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 84.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 84.11 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 82.28 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 82.22 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 81.61 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 81.18 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-30 Score=225.82 Aligned_cols=173 Identities=52% Similarity=1.005 Sum_probs=139.9
Q ss_pred hhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC
Q 021836 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (307)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~ 181 (307)
++.||+.+.+||++++++.++|+|||++++..++.+++.||..+...... ......++||+|||.|++|..+|.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999988764321 1224679999999999999999999999
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch
Q 021836 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW 261 (307)
Q Consensus 182 ~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~ 261 (307)
+|..||+++.+++.|++.+... ..+..++++.+++ +|.|+.++||+||++|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ-----------------------~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQ-----------------------DFTPEEGKYDLIWIQW 130 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GG-----------------------G----TT-EEEEEEES
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHh-----------------------hccCCCCcEeEEEehH
Confidence 9999999999999999887641 2456788899998 8888778999999999
Q ss_pred hhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCc-ccCCCC
Q 021836 262 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT-FLLSHS 305 (307)
Q Consensus 262 ~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~-~~d~~~ 305 (307)
++.|++|+++.++|++|...|+|||++++.||+..++. ++|++|
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D 175 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED 175 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc
Confidence 99999999999999999999999999999999999996 788876
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-19 Score=157.67 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=81.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||||.++..++.... .+|+++|+|+.|++.|+++....+. ..+.+.+.+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~----------- 108 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAE----------- 108 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTT-----------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHH-----------
Confidence 3678999999999999997655433 2899999999999999998754322 24566666666
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.+++++++||+|++++.+++++ +....+++++++|||||.+++.|...+.+
T Consensus 109 ------------~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 109 ------------DLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp ------------B--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred ------------HhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 7777789999999999999999 67889999999999999999999876665
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=153.02 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=94.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||||.++..+..... .+|+++|+|+.|++.++++....+.. .+.|+..+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~------~i~fv~~dAe------------- 111 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ------NVEFVVGDAE------------- 111 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc------ceEEEEechh-------------
Confidence 689999999999999997655442 38999999999999999998764432 2677777777
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++++++||+|.+++.|++++ ++..+|++++|+|||||.+++.|...+.
T Consensus 112 ----------~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 112 ----------NLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred ----------hCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8888999999999999999999 7799999999999999999999875543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-17 Score=150.01 Aligned_cols=106 Identities=21% Similarity=0.285 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..+. +...+|+|+|+++.|++.|+.+....+. ...+.+.+.+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae-------------- 190 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAE-------------- 190 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHH--------------
Confidence 56799999999999999654 4444799999999999999977532111 123455555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++..+++||+|++..+++|+. +...+++++.++|||||.+++...
T Consensus 191 ---------~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 191 ---------KLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred ---------HhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5544567899999999999999 558999999999999999999763
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=145.42 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=87.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..+..... .+|+|+|+|+.|++.|+++....... ....+.+.+.+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~---~~~~i~~~~~d~~----------- 137 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS---CYKNIEWIEGDAT----------- 137 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc---cCCCeEEEEcccc-----------
Confidence 3578999999999999986554432 37999999999999998765311000 0123444455544
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.+++++++||+|+++++++|+. +...++++++++|||||.|++.|...+..
T Consensus 138 ------------~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 138 ------------DLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred ------------cCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 5666678999999999999998 66899999999999999999998765543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=121.06 Aligned_cols=95 Identities=28% Similarity=0.386 Sum_probs=76.8
Q ss_pred EEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeecc
Q 021836 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKK 241 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~ 241 (307)
||+|||+|..+..+......+|+++|+++.+++.++++....+ ..+...+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------~~~~~~d~~------------------- 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------VSFRQGDAE------------------- 52 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------EEEEESBTT-------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------chheeehHH-------------------
Confidence 8999999999997665535589999999999999999875431 225566665
Q ss_pred CCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 242 GISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 242 d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+++++++||+|++..+++|+. +...+++++.++|||||+++|
T Consensus 53 ----~l~~~~~sfD~v~~~~~~~~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 53 ----DLPFPDNSFDVVFSNSVLHHLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----SSSS-TT-EEEEEEESHGGGSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----hCccccccccccccccceeecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 6777789999999999999995 789999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=141.34 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=84.3
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|.++..| ++....|+|+|+++.|++.|++.....+..+.....++.+.+.+.+
T Consensus 90 g~~ilDvGCGgGLLSepL-Arlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E--------------- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPL-ARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE--------------- 153 (282)
T ss_pred CceEEEeccCccccchhh-HhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh---------------
Confidence 478999999999999974 5666679999999999999998865444433222233444444444
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. .+.||.|+|..+++|.. +++.+++.+.+.|||||.++++.-
T Consensus 154 --------~~---~~~fDaVvcsevleHV~--dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 154 --------GL---TGKFDAVVCSEVLEHVK--DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred --------hc---ccccceeeeHHHHHHHh--CHHHHHHHHHHHhCCCCceEeeeh
Confidence 33 35699999999999999 669999999999999999999764
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=123.54 Aligned_cols=109 Identities=24% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
|+.+|||+|||+|..+..++.. ...+|+++|+|+.|++.|++++...+. ..++.+++.++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~------------- 62 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAE------------- 62 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCH-------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccc-------------
Confidence 3578999999999999987763 334799999999999999998832211 233444444431
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcch-hhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... ..++||+|++.+ +++++.. ++...+++++.+.|+|||+|++.++
T Consensus 63 ---------~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 63 ---------FDPD-FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp ---------GGTT-TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ---------cCcc-cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 0222 246799999998 5554432 4678999999999999999999763
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=145.36 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||||||+|..+..+......+|+|+|+|+.|++.++++....+. ...+.+...|..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~------------- 178 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADAL------------- 178 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcc-------------
Confidence 46689999999999999976655545899999999999999987654322 123444444444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++++++||+|++..+++|+. +...++++++++|||||.|++.+.+
T Consensus 179 ----------~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 179 ----------NQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ----------cCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5555678999999999999998 6689999999999999999998754
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=138.94 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=95.0
Q ss_pred CCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 021836 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP 208 (307)
Q Consensus 129 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~ 208 (307)
.+++-.+.....++..+- .+++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++...
T Consensus 32 ~~~~gg~~~~~~~l~~l~--------l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------ 97 (263)
T PTZ00098 32 YISSGGIEATTKILSDIE--------LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------ 97 (263)
T ss_pred CCCCCchHHHHHHHHhCC--------CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------
Confidence 344444444455554331 346789999999999999876554434899999999999999987642
Q ss_pred ccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEE
Q 021836 209 DMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 209 ~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~l 288 (307)
...+.+...++. ..+.++++||+|++..+++|++..+...++++++++|||||.|
T Consensus 98 --~~~i~~~~~D~~-----------------------~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 98 --KNKIEFEANDIL-----------------------KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred --CCceEEEECCcc-----------------------cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 122344444433 3444568999999999999998667899999999999999999
Q ss_pred EEEeccCC
Q 021836 289 VLKENIAR 296 (307)
Q Consensus 289 ii~e~~~~ 296 (307)
++.+.+..
T Consensus 153 vi~d~~~~ 160 (263)
T PTZ00098 153 LITDYCAD 160 (263)
T ss_pred EEEEeccc
Confidence 99987543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-16 Score=136.99 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||-|.++..++..+ .+|+|+|+++.+++.|+.+..+.++ .+++.+..++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~e-------------- 116 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVE-------------- 116 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHH--------------
Confidence 67899999999999999866555 5699999999999999988765433 2345444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++....++||+|+|..+++|+++ ...+++.|.+++||||.++++..
T Consensus 117 ---------dl~~~~~~FDvV~cmEVlEHv~d--p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 117 ---------DLASAGGQFDVVTCMEVLEHVPD--PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ---------HHHhcCCCccEEEEhhHHHccCC--HHHHHHHHHHHcCCCcEEEEecc
Confidence 44333479999999999999994 48899999999999999999764
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=135.37 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCceEEEEeccccHHHHHHHHh--cC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++.. .. .+++++|+|+.|++.|++++...+. ...+.+.+.++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~----------- 119 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIR----------- 119 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChh-----------
Confidence 5679999999999999866542 22 3799999999999999998854322 113444444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
+.+. ..+|+|+++.+++|+++++...+++++++.|||||.|++.|.+...+
T Consensus 120 ------------~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 120 ------------DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred ------------hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 4432 35999999999999987778899999999999999999999765544
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=131.83 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=83.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.++++....++. .+.+...++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~------~v~~~~~d~~-------------- 88 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD------NLHTAVVDLN-------------- 88 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC------cceEEecChh--------------
Confidence 457999999999999997666544 7999999999999999877543321 1334344443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+.+ +++||+|+++.+++|++.+++..+++++.++|+|||++++.+.+
T Consensus 89 ---------~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 89 ---------NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred ---------hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 3333 45799999999999988778899999999999999997765543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=125.19 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++... ..+++|+|+|+.|++.|++++...+.. ++.+++.++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~------ni~~~~~d~~------------ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD------NIEFIQGDIE------------ 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST------TEEEEESBTT------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc------ccceEEeehh------------
Confidence 56899999999999999876443 238999999999999999987544321 3455555554
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++. .+ ++||+|++..+++|+. +...+++++.+.|++||.+++.+..
T Consensus 65 -----------~l~~~~~-~~~D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 -----------DLPQELE-EKFDIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----------CGCGCSS-TTEEEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----------ccccccC-CCeeEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 343 22 7899999999999999 6689999999999999999998764
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=131.27 Aligned_cols=111 Identities=14% Similarity=0.259 Sum_probs=86.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|++++...+. ...+.+...++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~----------- 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIR----------- 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChh-----------
Confidence 56799999999999998766653 22799999999999999988754321 112344445444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++ ..+|+|+++.+++|+++++...+++++++.|+|||.|++.|.+...
T Consensus 117 ------------~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 117 ------------HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred ------------hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 4432 3589999999999998878899999999999999999999976543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-15 Score=128.30 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.++. +|+++|+|+.|++.++++....+. .+.+...++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~-------------- 87 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN-------------- 87 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch--------------
Confidence 457999999999999997665544 799999999999999877643221 1223233332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... +++||+|+++.+++|++.+++..+++++.+.|+|||++++.+.
T Consensus 88 ---------~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 88 ---------AAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ---------hccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 2222 3579999999999999877889999999999999999776654
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=131.65 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=85.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..+..... .+|+++|+|+.|++.++++....+. ..+.++..+..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~----------- 106 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM----------- 106 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh-----------
Confidence 3568999999999999997655532 3799999999999999988754322 12344444444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++.++++||+|++.++++|++ +...+++++.++|+|||.+++.+...+
T Consensus 107 ------------~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 107 ------------ELPFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred ------------cCCCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 4444567999999999999988 568899999999999999999886443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-15 Score=133.34 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..+..... .+|+|+|+|+.|++.|+++ .+.+...+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~------------- 82 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVR------------- 82 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh-------------
Confidence 568999999999999997666543 3799999999999999753 1345555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ..++||+|+++.+++|++ +...+++++++.|||||.+++.
T Consensus 83 ----------~~~-~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 83 ----------DWK-PKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----------hCC-CCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEE
Confidence 443 357899999999999998 5689999999999999999986
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=134.76 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|+++....+. ...+.+++.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~-------------- 103 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQ-------------- 103 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHH--------------
Confidence 4579999999999999976655 45799999999999999988765432 123445555544
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++. ..+++||+|++..+++|+. +...+++++.++|||||.|++..
T Consensus 104 ---------~l~~~~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 104 ---------DIAQHLETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ---------HHhhhcCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 332 2357899999999999998 44789999999999999998764
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=133.13 Aligned_cols=165 Identities=32% Similarity=0.471 Sum_probs=125.5
Q ss_pred cchhHHHHHHHhhcccccccccc-cccCCCCCcc---cchhcHHHHHHHHHhc-cCCCcc-CCCCceEEEEeccccHHHH
Q 021836 100 EKKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSD-RFPNAR-NNQHLVALDCGSGIGRITK 173 (307)
Q Consensus 100 ~~~~~~~~~~~~yW~~~~~~~~~-~~~~y~~~~~---~~~~~~~~~l~~ll~~-~~~~~~-~~~~~~ILDiGcGtG~~t~ 173 (307)
.+...+|+++..||.++..+.++ ++++|...+. .++..+..++..+... +++... -..-...+|+|+|+|+++.
T Consensus 114 ~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k 193 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLK 193 (342)
T ss_pred hhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHH
Confidence 34457789999999999999999 7888887555 6677777777777652 222110 1123688999999999999
Q ss_pred HHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCc
Q 021836 174 NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGR 253 (307)
Q Consensus 174 ~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 253 (307)
.++. .+++|.+++.....+..+...+. .+. ..+....++ + .| +
T Consensus 194 ~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV--------~~v~gdmfq-----------------------~-~P---~ 236 (342)
T KOG3178|consen 194 NLLS-KYPHIKGINFDLPFVLAAAPYLA-PGV--------EHVAGDMFQ-----------------------D-TP---K 236 (342)
T ss_pred HHHH-hCCCCceeecCHHHHHhhhhhhc-CCc--------ceecccccc-----------------------c-CC---C
Confidence 9888 77779999999999888887763 211 112222222 4 32 3
Q ss_pred eeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCccc
Q 021836 254 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301 (307)
Q Consensus 254 fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~ 301 (307)
-|+||+.|++||++|++..++|++|++.|+|||.+++.|++.+.....
T Consensus 237 ~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~ 284 (342)
T KOG3178|consen 237 GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKF 284 (342)
T ss_pred cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCc
Confidence 469999999999999999999999999999999999999988764443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=133.28 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=134.9
Q ss_pred CCceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccccch--------hHHH
Q 021836 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--------TQWY 106 (307)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~--------~~~~ 106 (307)
....-++.+|+.|+.++...+.+... -+..+.+.+.|...+| .+++.++.+....... ....+ ..+-
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~-~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLNK-IDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCccc-cccceeEEEEEEecccc
Confidence 34556999999999999999887663 2337899999999999 6888888887653211 00000 0000
Q ss_pred --HHHHhhcccccc---cccccccCCCCCcccchh-cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 107 --REGISYWEGVEA---SVDGVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 107 --~~~~~yW~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
-...+||..... .+...-+.| +...+. +++.++..+.. ....+|||+|||+|.++..++....
T Consensus 151 ~~~~~~~~~~~y~~~~l~i~~~pgvF---s~~~lD~gt~lLl~~l~~--------~~~g~VLDlGCG~G~ls~~la~~~p 219 (342)
T PRK09489 151 PVFDADKFWKEYQVDGLTVKTLPGVF---SRDGLDVGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSAVLARHSP 219 (342)
T ss_pred CCCcccccceeeecCCEEEEeCCCCC---CCCCCCHHHHHHHHhccc--------cCCCeEEEeccCcCHHHHHHHHhCC
Confidence 011356653321 111111222 222222 33334433321 1345899999999999997766654
Q ss_pred C-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEc
Q 021836 181 N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWV 259 (307)
Q Consensus 181 ~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~ 259 (307)
. +|+++|+|+.|++.+++++...+.. ..++..+.. .. ..++||+|++
T Consensus 220 ~~~v~~vDis~~Al~~A~~nl~~n~l~-------~~~~~~D~~----------------------~~---~~~~fDlIvs 267 (342)
T PRK09489 220 KIRLTLSDVSAAALESSRATLAANGLE-------GEVFASNVF----------------------SD---IKGRFDMIIS 267 (342)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-------CEEEEcccc----------------------cc---cCCCccEEEE
Confidence 3 7999999999999999887654321 122222221 12 2568999999
Q ss_pred chhhhhCC---hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 260 QWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 260 ~~~l~~~~---~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+..+|+.. ......+++.+.+.|||||.|+++.|
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 98887532 23468999999999999999999877
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-15 Score=117.08 Aligned_cols=96 Identities=24% Similarity=0.487 Sum_probs=74.0
Q ss_pred EEEEeccccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~---~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
|||+|||+|..+..+.... . .+++++|+|+.|++.++++....+ ..+++++.|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~-------------- 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADAR-------------- 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTT--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHh--------------
Confidence 7999999999999766554 2 589999999999999998874321 13455566555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcc-hhhhhCChhHHHHHHHHHHHcCCCCc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~dl~~~l~~l~~~LkpGG 286 (307)
+++...++||+|++. .+++|++++++..+++++.++|+|||
T Consensus 60 ---------~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 60 ---------DLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---------CHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ---------HCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 444456799999995 45999999999999999999999998
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=128.86 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
+.+.+++||++||||.++..++.... .+|+.+|+|+.|+..++++..+.++.. .....+.+.|.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~---~~~~~w~~~dAE----- 169 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA---SSRVEWVEGDAE----- 169 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---CCceEEEeCCcc-----
Confidence 34679999999999999998877532 379999999999999999886544421 234566677777
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++++++++||..++.+.+.+++ ++++.+++++++|||||.|.+.|..
T Consensus 170 ------------------~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 170 ------------------DLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred ------------------cCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 8888899999999999999999 7799999999999999999998864
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=131.42 Aligned_cols=133 Identities=19% Similarity=0.291 Sum_probs=88.3
Q ss_pred CCCceEEEEeccccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCcccc
Q 021836 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQ 224 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~----~t~~ll~~~~------~~v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 224 (307)
.++.+|||+|||||. ++..+..... .+|+|+|+|+.|++.|++..-.. ...+.......+++...
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~---- 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV---- 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC----
Confidence 356899999999996 3443333221 27999999999999998754210 00000001111122110
Q ss_pred cccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 225 REKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 225 ~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...+..+ +.+|+|.+.|+.... ++.++||+|+|.++++|+++++...+++++++.|+|||+|++...
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 00011111 356889999887543 346799999999999999988889999999999999999999644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-16 Score=122.11 Aligned_cols=98 Identities=24% Similarity=0.365 Sum_probs=59.5
Q ss_pred EEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeec
Q 021836 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAK 240 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~ 240 (307)
||+|||+|..+..++..... +++++|+|+.|++.+++++...... ...... +..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~-------------------~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLR-------------------FDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE---------------------S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEE-------------------eec
Confidence 79999999999988777533 8999999999998888776543211 001111 111
Q ss_pred cCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEE
Q 021836 241 KGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 241 ~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~l 288 (307)
.+.. .. ...++||+|++.++++|+. ++..+++++++.|||||.|
T Consensus 56 ~~~~-~~-~~~~~fD~V~~~~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 56 LDLF-DY-DPPESFDLVVASNVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp SS----C-CC----SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred CChh-hc-ccccccceehhhhhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 1111 11 1125999999999999995 7899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=130.82 Aligned_cols=100 Identities=18% Similarity=0.340 Sum_probs=81.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||+|||+|.++..+... ..+|+++|+|+.|++.++++... ..+.+.+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~-------------- 95 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIE-------------- 95 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcc--------------
Confidence 4578999999999999865444 45799999999999999887531 234556655
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..+++||+|+++.+++++. +...++.++.++|+|||.++++..
T Consensus 96 ---------~~~~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 96 ---------SLPLATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ---------cCcCCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5555567899999999999888 668999999999999999999754
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=130.21 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=82.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.++..++.++.-+|+|+.+|+.+.+.+++++...++.+ .+.+...|..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~-----~v~v~~~D~~------------ 122 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLED-----RVEVRLQDYR------------ 122 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSS-----TEEEEES-GG------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCC-----ceEEEEeecc------------
Confidence 56889999999999999998877754489999999999999999987665432 3334344333
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
++ +.+||.|++..++.|+...+...+++++.+.|||||.+++-..+..
T Consensus 123 -----------~~---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 123 -----------DL---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp -----------G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -----------cc---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 44 3499999999999999988899999999999999999998655433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=128.63 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.+++.++..+..+|+|+++|+++.+.+++++...+.. ..+++.-.|..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r------------ 132 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR------------ 132 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc------------
Confidence 5689999999999999999876666458999999999999999988765543 22333333322
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
++ .+.||-|++...++|+.......+++++++.|+|||.+++.....++
T Consensus 133 -----------d~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 133 -----------DF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred -----------cc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 33 45699999999999999888999999999999999999987665544
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=118.62 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=81.8
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
....++..+.+. ..++.+|||+|||+|.++..+....+ +++++|+++.+++. ... ..
T Consensus 8 ~~~~~~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~~--------------~~ 64 (161)
T PF13489_consen 8 AYADLLERLLPR------LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RNV--------------VF 64 (161)
T ss_dssp CHHHHHHHHHTC------TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TTS--------------EE
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hhh--------------hh
Confidence 334556666542 23678999999999999997644444 89999999999988 110 01
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
...... ....++++||+|+|+.+++|++ +...+++.+.++|||||++++.+...
T Consensus 65 ~~~~~~-----------------------~~~~~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 65 DNFDAQ-----------------------DPPFPDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEECH-----------------------THHCHSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhhhh-----------------------hhhccccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 111111 1122367999999999999999 67999999999999999999988754
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=125.21 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||||.++..+......+|+|+|+|+.|++.|+++. .+.+.+.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~-------------- 102 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFE-------------- 102 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechh--------------
Confidence 35799999999999999765553347999999999999998642 12345555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG 285 (307)
.+++++++||+|++.++++|++ ++..++++++++|||.
T Consensus 103 ---------~lp~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 103 ---------ALPFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ---------hCCCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc
Confidence 5666788999999999999988 6689999999999994
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=124.27 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=82.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+|||+|||+|.++..++..+.. +++++|+++.+++.++++.. ..+.++..++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~------------- 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAE------------- 90 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchh-------------
Confidence 4578999999999999977666543 68999999999999988763 12445555555
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.++++||+|++.++++|+. +...++.++.++|+|||.+++.+.
T Consensus 91 ----------~~~~~~~~fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 91 ----------KLPLEDSSFDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ----------hCCCCCCceeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4444567899999999999988 568899999999999999998754
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=137.16 Aligned_cols=108 Identities=21% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ...+.+...++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~-------------- 324 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCT-------------- 324 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcc--------------
Confidence 56799999999999998765554447999999999999998775321 112344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
..+.++++||+|+|..+++|+. +...++++++++|||||.|++.+.+..
T Consensus 325 ---------~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 325 ---------KKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred ---------cCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 3333467899999999999998 568999999999999999999886543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.4e-14 Score=126.58 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=79.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..+..... .+|+++|+|+.|++.|++++. .+.+...++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~------------ 86 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIA------------ 86 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchh------------
Confidence 3568999999999999997665543 389999999999999988753 1334445544
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ..++||+|+++.+++|+. +...+++++.+.|||||.+++.
T Consensus 87 -----------~~~-~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 87 -----------SWQ-PPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -----------ccC-CCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 333 246899999999999998 5688999999999999999885
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-14 Score=129.94 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=81.1
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|..+..++..+. +|+++|+|+.+++.+++++...+. .+.+...++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~--------------- 177 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDIN--------------- 177 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechh---------------
Confidence 45999999999999997665554 799999999999999988754322 1233333333
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... +++||+|+++.+++|++.+++..+++++.+.|+|||++++...
T Consensus 178 --------~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 178 --------SASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred --------cccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2222 5789999999999999887899999999999999999776543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=121.59 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=80.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.++||+|||.|+.+..++..++. |+++|.|+..++.+++.+...++ .++....|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~-------------- 87 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN-------------- 87 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC--------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch--------------
Confidence 5689999999999999987777775 99999999999998877644322 2344455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+ ++.||+|++..+++|+..+.+..+++++.+.++|||++++...
T Consensus 88 ---------~~~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 ---------DFDF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ---------CBS--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------hccc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 4443 4689999999999999998899999999999999999888544
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-14 Score=131.16 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=81.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++..+...|+|+|+|+.|+..++......+ ....+.+...+++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----~~~~i~~~~~d~e-------------- 182 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----NDQRAHLLPLGIE-------------- 182 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----CCCCeEEEeCCHH--------------
Confidence 467999999999999998777776689999999999986543321100 0123445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++. +++||+|+|..+++|.. +...+++++++.|+|||.|++...
T Consensus 183 ---------~lp~-~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 183 ---------QLPA-LKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ---------HCCC-cCCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 5544 67899999999999988 568899999999999999998654
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=118.10 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++... +.+...++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~-----------~~~~~~d~~------------- 98 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-----------INIIQGSLF------------- 98 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-----------CcEEEeecc-------------
Confidence 56789999999999999765543 34799999999999999886531 233344433
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
. +.++++||+|+++.+++|++++++..+++++.+++ ++++++.|...+
T Consensus 99 ----------~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 99 ----------D-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ----------C-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 3 33577999999999999998778899999999997 578888876443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=118.18 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=78.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+-.++||+|||.|.+|.. |+....+++++|+|+..++.|+++.... ..+.
T Consensus 43 ry~~alEvGCs~G~lT~~-LA~rCd~LlavDis~~Al~~Ar~Rl~~~--------~~V~--------------------- 92 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTER-LAPRCDRLLAVDISPRALARARERLAGL--------PHVE--------------------- 92 (201)
T ss_dssp SEEEEEEE--TTSHHHHH-HGGGEEEEEEEES-HHHHHHHHHHTTT---------SSEE---------------------
T ss_pred ccceeEecCCCccHHHHH-HHHhhCceEEEeCCHHHHHHHHHhcCCC--------CCeE---------------------
Confidence 457899999999999996 5666788999999999999999998642 2233
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+.++...+ +.++||+|+++.+++|+++ +++..++.++...|+|||.|++...
T Consensus 93 -~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 93 -WIQADVPEFW--PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEES-TTT-----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -EEECcCCCCC--CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4444443343 3689999999999999985 6789999999999999999999653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=121.84 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=81.1
Q ss_pred eEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||||||+|..+..++..+. .+|+++|+|+.+++.+++++...+. ...+.+...++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~---------------- 60 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSA---------------- 60 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccc----------------
Confidence 699999999999997766653 3799999999999999988754332 122344444432
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+. .++||+|++..+++|+. +...++++++++|||||.+++.+.+
T Consensus 61 -------~~~~-~~~fD~I~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 61 -------KDPF-PDTYDLVFGFEVIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------cCCC-CCCCCEeehHHHHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 2222 45899999999999998 5689999999999999999998764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=128.89 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++....... ....+.+...+++
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----~~~~v~~~~~~ie-------------- 181 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----NDKRAILEPLGIE-------------- 181 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----cCCCeEEEECCHH--------------
Confidence 567999999999999987777766689999999999987543211000 0112334444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++++ ..+||+|+|..+++|.. +...++++++++|||||.|++.+.+
T Consensus 182 ---------~lp~-~~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 182 ---------QLHE-LYAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred ---------HCCC-CCCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4433 35899999999999998 5588999999999999999986543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=125.61 Aligned_cols=109 Identities=24% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++..... +|+++|+++.|++.|+++....+.. .+.+...+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~------~v~~~~~d~~----------- 138 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT------NVEFRLGEIE----------- 138 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC------CEEEEEcchh-----------
Confidence 36789999999999988754443322 6999999999999999887543321 2344444444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.++.++++||+|+++.+++|.. +...+++++.++|||||.|++.+...
T Consensus 139 ------------~l~~~~~~fD~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 139 ------------ALPVADNSVDVIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ------------hCCCCCCceeEEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 4444567899999999998887 56889999999999999999987653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=126.34 Aligned_cols=105 Identities=23% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|+++... ..+.+...+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e------------- 170 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAE------------- 170 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHH-------------
Confidence 567999999999999887655432 3799999999999999987531 12345555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
..+.++++||+|+++.+++|+. +...++++++++|||||.+++.+.+.
T Consensus 171 ----------~lp~~~~sFDvVIs~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~ 218 (340)
T PLN02490 171 ----------DLPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVH 218 (340)
T ss_pred ----------hCCCCCCceeEEEEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 4555567899999999999988 44789999999999999999876543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=117.70 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=77.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++....+.. .+.+...+..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~------~i~~~~~d~~------------- 105 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK------NVTVVHGRAE------------- 105 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC------CEEEEeccHh-------------
Confidence 468999999999999996654433 38999999999999999887654321 1444455444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. .++||+|+++.. . ++..+++.+++.|+|||.|++.+.
T Consensus 106 ----------~~~~-~~~fDlV~~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 106 ----------EFGQ-EEKFDVVTSRAV----A--SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ----------hCCC-CCCccEEEEccc----c--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 4433 568999998642 2 568899999999999999999865
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=132.43 Aligned_cols=111 Identities=24% Similarity=0.411 Sum_probs=85.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+.. ...+|+++|+++.|++.+++.... ...+.+++.++.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~-~~~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~-------------- 93 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAK-KAGQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT-------------- 93 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHh-hCCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc--------------
Confidence 456899999999999997554 456899999999999987654321 122334444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
...+++++++||+|+++++++|++++++..+++++.+.|||||++++.|++...
T Consensus 94 -------~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 94 -------SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred -------ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 002334567999999999999999877899999999999999999999986543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=118.70 Aligned_cols=118 Identities=11% Similarity=-0.047 Sum_probs=81.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|..+..++.+++ +|+|+|+|+.+++.+.+....... ..... ........+|
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~------------~~~~~----~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPT------------VTQQG----EFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcc------------eeccc----cceeeecCce
Confidence 457999999999999998776666 599999999999986543211000 00000 0000012346
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++.++|+........+.||.|+-..+++|++.+....+++.+.++|||||.+++.
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 6777766532211135799999999999999888899999999999999976654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-13 Score=120.11 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=137.0
Q ss_pred CCceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccc--cchhHHHH-----
Q 021836 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQ--EKKTQWYR----- 107 (307)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~--~~~~~~~~----- 107 (307)
....-|+-||+.++.++.+.+.+...- +....+.+.|...+| ..++.+|..+......... +....||.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 556778999999999999998877643 236789999999999 7888888887765432211 01111110
Q ss_pred --HHHhhcccc----cccccccccCCCCCcccchh-cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 108 --EGISYWEGV----EASVDGVLGGFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 108 --~~~~yW~~~----~~~~~~~~~~y~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
....+|... .-++...-|- ++...++ +++-+++.+-. ....+|||+|||.|.++..++...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGV---FS~~~lD~GS~lLl~~l~~--------~~~~~vlDlGCG~Gvlg~~la~~~p 181 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGV---FSRDKLDKGSRLLLETLPP--------DLGGKVLDLGCGYGVLGLVLAKKSP 181 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCC---CcCCCcChHHHHHHHhCCc--------cCCCcEEEeCCCccHHHHHHHHhCC
Confidence 011233322 2222211122 2233333 44444443332 2345999999999999997766665
Q ss_pred C-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEc
Q 021836 181 N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWV 259 (307)
Q Consensus 181 ~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~ 259 (307)
. +++.+|+|...++.+++++..++..+. .++..++. +.. .++||+|+|
T Consensus 182 ~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~------~v~~s~~~----------------------~~v---~~kfd~Iis 230 (300)
T COG2813 182 QAKLTLVDVNARAVESARKNLAANGVENT------EVWASNLY----------------------EPV---EGKFDLIIS 230 (300)
T ss_pred CCeEEEEecCHHHHHHHHHhHHHcCCCcc------EEEEeccc----------------------ccc---cccccEEEe
Confidence 3 899999999999999999876654321 22222221 122 349999999
Q ss_pred chhhhhCChhHH----HHHHHHHHHcCCCCcEEEEEec
Q 021836 260 QWCIGHLTDDDF----VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 260 ~~~l~~~~~~dl----~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+-.+|- ...-. .+++....+.|++||.|.|+-|
T Consensus 231 NPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 988753 22222 4899999999999999999887
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=118.67 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=82.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++.... .+++++|+++.+++.++++.... ...+.+...++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~----------- 79 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD----------- 79 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc-----------
Confidence 4678999999999999997766542 37999999999999998873211 123344444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+...++||+|++..+++|+. +...+++++.++|||||.+++.+.
T Consensus 80 ------------~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 ------------GLPFPDGSFDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ------------cCCCCCCCceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 3333467899999999999998 568899999999999999999874
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-13 Score=133.51 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+...... +|+|+|+|+.|++.|+++....+ ....+.+.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~------------- 477 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAI------------- 477 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchH-------------
Confidence 4679999999999998866554433 89999999999999998764221 12233344433
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhC-----------ChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~-----------~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++ +++++||+|+++.++|++ ...++..+++++.++|||||.+++.|.+.+
T Consensus 478 ----------dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 478 ----------NLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred ----------hCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 332 346789999999998875 235678999999999999999999987544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=9e-13 Score=117.21 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+++++|+++.+++.+++++...+. ...+.+...++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------ 113 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAE------------ 113 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccc------------
Confidence 567999999999999998776664 5899999999999999988753221 122344444443
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
....+.++||+|++..+++++. +...+++++.+.|+|||.+++.+...+
T Consensus 114 -----------~~~~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 114 -----------ALPFPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred -----------cCCCCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 3333457899999999999988 668999999999999999999887543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=117.91 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=83.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|.|+|||+|..|..+..+... .|+|+|.|+.|++.|+.+... .+|...|+.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----------~~f~~aDl~------------ 85 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-----------ATFEEADLR------------ 85 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----------CceecccHh------------
Confidence 36689999999999999966656554 899999999999999888643 455566665
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.|.+ ..+.|+|+++.+++.++ |-..+|.++...|.|||+|.+-
T Consensus 86 -----------~w~p-~~~~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 86 -----------TWKP-EQPTDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -----------hcCC-CCccchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 6665 56899999999999999 6689999999999999999884
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=117.31 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=83.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
....+||+|||||..-.. .... ..+||++|+++.|-+.+.+++.+.... ....|...+.+
T Consensus 76 ~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge------------- 136 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGE------------- 136 (252)
T ss_pred CccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechh-------------
Confidence 446789999999988663 3321 227999999999999999988765322 12224444444
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++ .++++||+|++..++.-.. +..+.|+++.++|+|||.+++.||+...
T Consensus 137 ----------~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 137 ----------NLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ----------cCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 444 3589999999999988777 6699999999999999999999997543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-13 Score=126.02 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=82.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||||||+|.++..++.....+|+++|+|+.|++.|+++.... .+.+...+..
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------~v~~~~~D~~------------ 223 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------PVEIRLQDYR------------ 223 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------eEEEEECchh------------
Confidence 3467899999999999999766554448999999999999999887321 1233333332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+ +++||+|++..+++|+...+...+++++.++|||||.+++...
T Consensus 224 -----------~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 224 -----------DL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -----------hc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 22 4689999999999999877788999999999999999999764
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-13 Score=117.78 Aligned_cols=151 Identities=18% Similarity=0.268 Sum_probs=84.4
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHH--HH-HHh----cCC---cEEEEeCCHHHHHHHHHHh-CCCCCC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK--NL-LIR----YFN---EVDLLEPVSHFLDAARESL-APENHM 206 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~--~l-l~~----~~~---~v~~vD~s~~~l~~A~~~~-~~~~~~ 206 (307)
...+...+++..+......+..+||.+||+||.-.. .+ +.. ... +|+|+|+|+.+++.|++-. ....+.
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 344455555544433333467999999999994222 22 222 122 7999999999999998643 222222
Q ss_pred CcccccccceeecCcccccccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC
Q 021836 207 APDMHKATNFFCVPLQGQREKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 207 ~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
+.......+++... .+...+.++ +..|+|.+.|+.. ..+..+.||+|+|.+++.|++.+....+++++++.|+|
T Consensus 92 ~~~~~~~~ryf~~~---~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 92 GLPPAYLRRYFTER---DGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp TS-HHHHHHHEEEE----CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred hhHHHHHHHhcccc---CCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 21122222333111 011222233 6789999999987 33346899999999999999999999999999999999
Q ss_pred CcEEEEEe
Q 021836 285 GGFFVLKE 292 (307)
Q Consensus 285 GG~lii~e 292 (307)
||+|++..
T Consensus 168 gG~L~lG~ 175 (196)
T PF01739_consen 168 GGYLFLGH 175 (196)
T ss_dssp EEEEEE-T
T ss_pred CCEEEEec
Confidence 99999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=118.48 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHh----cC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~----~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.|+++.... .+.+...+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~~~~--------- 121 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------GVTFRQAVSD--------- 121 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------CCeEEEEecc---------
Confidence 5679999999999998865432 22 27999999999999998875321 1223233222
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+...+++||+|+++.++||++++++..+++++.++++ |.+++.+.
T Consensus 122 --------------~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 122 --------------ELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred --------------cccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 22224678999999999999998778899999999998 55555443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=114.05 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++..... +++++|+++.+++.++++.. . ...+.+...++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------~~~i~~~~~d~~------------ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------PLNIEFIQADAE------------ 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------CCCceEEecchh------------
Confidence 5689999999999999987777663 79999999999999988764 1 123445455444
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
+.+...++||+|+++.+++|+. +...+++++.+.|+|||.+++.+....
T Consensus 99 -----------~~~~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 99 -----------ALPFEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred -----------cCCCCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 3333457899999999999988 668999999999999999999886443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=110.83 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|.++..++..... +|+++|+++.+++.+++++...+..+ +.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~------v~-------------------- 84 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN------VE-------------------- 84 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT------EE--------------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc------cc--------------------
Confidence 4678999999999999976665555 79999999999999999886543321 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh---hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~---~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...|..... .+++||+|+++-.++...+ .-+..+++.+.+.|+|||.|+++-+
T Consensus 85 --~~~~d~~~~~--~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 85 --VVQSDLFEAL--PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp --EEESSTTTTC--CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccccccccc--cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3333433333 2589999999977654442 2368899999999999999977544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=112.58 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+..... .+|+++|+|+.|++.++++....+.. .+.+.+.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~------~i~~i~~d~~------------- 102 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN------NVEIVNGRAE------------- 102 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC------CeEEEecchh-------------
Confidence 367999999999999986554433 37999999999999998877543321 2444455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++. ..++||+|++.. ++ ++..+++.+.+.|+|||.+++..
T Consensus 103 ----------~~~-~~~~fD~I~s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 103 ----------DFQ-HEEQFDVITSRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----------hcc-ccCCccEEEehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 332 257899999865 32 45667889999999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=119.95 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=84.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||||||+|.++..++..+.. +++++|. +.+++.+++++...+.. .+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~r--------------------- 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-----DR--------------------- 200 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-----ce---------------------
Confidence 35679999999999999988777654 7999997 78999999887654331 12
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
|++...|... ... ..+|+|++.+++|+++++....+++++++.|+|||.|++.|.+..
T Consensus 201 -v~~~~~d~~~-~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 201 -MRGIAVDIYK-ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -EEEEecCccC-CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3344444332 222 247999999999998877678999999999999999999997554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=115.80 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=78.6
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|||+|||+|.++..++..... +|+++|.|+.+++.|++++..++... .. ++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~----------------------~v 283 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---LD----------------------RC 283 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc---Cc----------------------eE
Confidence 468999999999999977666654 89999999999999998875432110 01 12
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhh---CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~---~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++...|..... +.++||+|+|+-.+|. +++....++++.+.+.|+|||.|+++-|
T Consensus 284 ~~~~~D~l~~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 284 EFMINNALSGV--EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEccccccC--CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 33333332233 2458999999866653 3333457899999999999999999854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-13 Score=118.18 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+-.++||+|||||..+.. +.....+++|+|+|.+|++.|.++--- -..++.+..
T Consensus 125 ~F~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Aea~-------------- 178 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAEAV-------------- 178 (287)
T ss_pred ccceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHhccch-----------HHHHHHHHH--------------
Confidence 467999999999999996 567777899999999999999876310 111122222
Q ss_pred eeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ..+.+||+|++..++.|+. ++..++.-+...|+|||.|.|+--
T Consensus 179 ---------~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 179 ---------LFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred ---------HHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEec
Confidence 121 2367899999999999999 889999999999999999999643
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=114.37 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=105.7
Q ss_pred HHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC---cE
Q 021836 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (307)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v 183 (307)
..+..||+.....-. ......++++..-++.+++-... ...+|||+|||.|.....+++.... .|
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 456689987543321 11224467777777766543222 2348999999999999988887655 69
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 184 ~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
.++|.|+.+++..+++.... ...+..+..|+...+ ..-+++.+++|.|++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~-------------------~~~~~~~~svD~it~IFvL 154 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPS-------------------LKEPPEEGSVDIITLIFVL 154 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchh-------------------ccCCCCcCccceEEEEEEE
Confidence 99999999999998775432 223333344443000 0223457899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 264 GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 264 ~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-++.+....++++++++|||||.+++.|-
T Consensus 155 SAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 155 SAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 999988899999999999999999999754
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=114.55 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCc-ccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~ 234 (307)
+..+|||+|||+|..+..++..... +|+++|+|+.|++.+++++...+. ..+.+.+.++ +
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~------------ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVE------------ 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHH------------
Confidence 4578999999999999976655433 799999999999999988754322 1234445444 2
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .++++||+|++++...+. .......+++++.++|||||.|++..
T Consensus 102 -----------~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 102 -----------VLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred -----------HHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 222 245789999987643221 11124788999999999999999864
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-12 Score=99.78 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.++++....+.. .+.+...+..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~------------- 79 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS------NIVIVEGDAP------------- 79 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC------ceEEEecccc-------------
Confidence 456999999999999998766654 38999999999999999877543221 1233333322
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.......++||+|++..... ...++++.+.+.|+|||.|++.
T Consensus 80 ---------~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 80 ---------EALEDSLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ---------ccChhhcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 11211245899999876432 4568899999999999999885
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=116.52 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=80.1
Q ss_pred CCceEEEEeccccHHHHHHHH-hcCC--cEEEEeCCHHHHHHHHHHhCC-CCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~-~~~~--~v~~vD~s~~~l~~A~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+|+|||||.|.++..++. ..+. +++++|+++.+++.|++.+.. .++ .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~--------------------- 176 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----S--------------------- 176 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----c---------------------
Confidence 568999999998865553444 3333 799999999999999988742 221 1
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+|+|...|+.. .....++||+|++. +++++++++..++++++.+.|+|||+|++.-
T Consensus 177 -~rV~F~~~Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 177 -KRMFFHTADVMD-VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -CCcEEEECchhh-cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 234455555443 22224789999999 9999977788999999999999999999864
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=111.27 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+. ...+.+...++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~-------------- 114 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLL-------------- 114 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChh--------------
Confidence 5689999999999999976554 44799999999999999988754321 112344444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. +++||+|++..+++|++.+++..+++++.+.+++++++.+.
T Consensus 115 ---------~~---~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 115 ---------SL---CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------hC---CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 33 26899999999999998777889999999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-12 Score=117.09 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.+++++......+ .....+.|...++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~-------------- 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLE-------------- 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchh--------------
Confidence 46799999999999999766554 479999999999999998875321100 00112233333332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+ +++||+|+|..+++|++++....+++.+.+ +.+||+++
T Consensus 208 ---------~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 208 ---------SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ---------hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 22 478999999999999987667778888875 45666644
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-12 Score=112.03 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=79.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+... ..+++++|+++.+++.+++++...+. .+.+...+..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~-------------- 105 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL-------KIDYRQTTAE-------------- 105 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEecCHH--------------
Confidence 5689999999999999876554 44699999999999999887643211 1233333332
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ...++||+|++..+++|.. +...+++.+.+.|+|||.+++...
T Consensus 106 ---------~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 106 ---------ELAAEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ---------HhhhhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 221 1247899999999999988 558899999999999999998754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=108.65 Aligned_cols=117 Identities=11% Similarity=-0.070 Sum_probs=81.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|..+..++..++ +|+|+|+|+.+++.+.+........ . ..+ ........+|
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~----~------~~~------~~~~~~~~~v 99 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQT----R------QSG------EFEHYQAGEI 99 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccc----c------ccc------cccccccCce
Confidence 457999999999999998776666 5999999999999875322110000 0 000 0000012346
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.++|+........+.||+|+-..+++|++.+....+++.+.++|+|||.+++
T Consensus 100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 666776653322223689999999999999988899999999999999996544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-12 Score=109.42 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..+.... ..+|+++|+++.+++.|++++...+.. ..+.+...+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~----------- 134 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGK----------- 134 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcc-----------
Confidence 366899999999999998554433 247999999999999999887543321 12333333332
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+ +..++||+|++..++.+++ +++.+.|+|||.|++.-
T Consensus 135 -----------~~~-~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 -----------RGL-EKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred -----------cCC-ccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 223 2356899999998876655 35778999999998853
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=105.55 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+..... +|+++|+|+.|++.+++++...+. .+.+...+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~-------------- 76 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-------GLDVVMTDLF-------------- 76 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcccc--------------
Confidence 456899999999999997665554 799999999999999988753211 1233333322
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-------------------HHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-------------------dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.. ..++||+|+++..+++.++. .+..+++++.+.|+|||.+++......
T Consensus 77 ---------~~--~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 77 ---------KG--VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ---------cc--cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 22 14589999998776655421 146789999999999999999876443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=109.41 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||+|||+|.++..++.... +|+++|+|+.|++.|++++...+. ...+.+...++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~-------------- 122 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLE-------------- 122 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCch--------------
Confidence 567999999999999997766554 599999999999999988754321 012333333322
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
...++||+|++..+++|++++++..+++.+.+.+++++++.+
T Consensus 123 ------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 123 ------------SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred ------------hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 125789999999999999888889999999998765555443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=112.30 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++....+..+ .+.+...+..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~-----~~~~~~~~~~-------------- 219 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD-----RLQVKLIYLE-------------- 219 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc-----ceEEEecccc--------------
Confidence 568999999999999987655555589999999999999999875433211 1111111111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ...++||+|+++.... .+..++.++.+.|||||+|+++..
T Consensus 220 ---------~--~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 220 ---------Q--PIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---------c--ccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1 1256899999975432 457889999999999999999754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=113.62 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=81.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.+++++.... . ...+.+++.|+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p----~~~v~~i~gD~~------------ 125 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-P----QLEVHGICADFT------------ 125 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-C----CceEEEEEEccc------------
Confidence 457899999999999998877753 479999999999999988864311 0 112233344443
Q ss_pred ceeeeccCCcCCCCCCC----CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPET----GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~----~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
....... +...++++..++++++.++...+|+++++.|+|||.|++.-+...+
T Consensus 126 ----------~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 126 ----------QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred ----------chhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 1111111 1344566667899999888999999999999999999986554443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.5e-12 Score=114.38 Aligned_cols=136 Identities=13% Similarity=0.128 Sum_probs=88.9
Q ss_pred CCceEEEEeccccHH--HHHH-HHhc---C--C-cEEEEeCCHHHHHHHHHHhC-CCCCCCcccccccceeecCcccccc
Q 021836 157 QHLVALDCGSGIGRI--TKNL-LIRY---F--N-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~--t~~l-l~~~---~--~-~v~~vD~s~~~l~~A~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
+..+||..||+||.- |+.+ +... . . +|+|+|+|+.+++.|++-.- ...+.+.......+++...-...+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999942 2222 2221 1 1 69999999999999986532 1111111111122232210000001
Q ss_pred cccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 227 KNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 227 ~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.++ +..|+|.+.|+...-.+..+.||+|+|.+++.|++++....+++++++.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 122233 678999999997632223578999999999999998889999999999999999998853
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=109.17 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
..|+..+... .++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++. ..+.+
T Consensus 57 g~~L~~l~~~-------~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVKI-------MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINF 124 (234)
T ss_pred HHHHHHHHHH-------hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEE
Confidence 4566555542 2567999999999999887665543 38999999999999999998765442 23344
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCC-----CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+.. ..+. .+.++||+|++.. .++....++..+.+.|+|||++++
T Consensus 125 ~~gda~----------------------~~L~~l~~~~~~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~- 176 (234)
T PLN02781 125 IQSDAL----------------------SALDQLLNNDPKPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAF- 176 (234)
T ss_pred EEccHH----------------------HHHHHHHhCCCCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEE-
Confidence 444432 1111 1146899999843 234667889999999999997555
Q ss_pred eccCCCCcccCCCC
Q 021836 292 ENIARSGTFLLSHS 305 (307)
Q Consensus 292 e~~~~~~~~~d~~~ 305 (307)
||+...|.+.|+++
T Consensus 177 dn~l~~G~v~~~~~ 190 (234)
T PLN02781 177 DNTLWFGFVAQEED 190 (234)
T ss_pred EcCCcCCeecCccc
Confidence 99999999888753
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=111.31 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=79.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH--HhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE--SLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||||||.|+.+..++..+...|+|+|++..+.-..+. ++... .....+....++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~lplgvE------------ 175 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFELPLGVE------------ 175 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEcCcchh------------
Confidence 578999999999999999998999899999999987766442 22110 111112223444
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+++. .+.||+|+|..+|.|..++ ...|+.++..|+|||.+++-..+
T Consensus 176 -----------~Lp~-~~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 176 -----------DLPN-LGAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred -----------hccc-cCCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEee
Confidence 5554 6789999999999999844 88999999999999999985444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=110.71 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+..+|||+|||+|.++..+..... ..++|+|+|+.|++.|+++.. .+.+...+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-----------~~~~~~~d~~---------- 143 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-----------QVTFCVASSH---------- 143 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-----------CCeEEEeecc----------
Confidence 456899999999999997655432 258999999999999987642 2344455554
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++++++||+|++.+. ...++++.++|||||+|+++..
T Consensus 144 -------------~lp~~~~sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 144 -------------RLPFADQSLDAIIRIYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -------------cCCCcCCceeEEEEecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 55556789999998654 1235788999999999998753
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=103.28 Aligned_cols=100 Identities=18% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +|+++|+++.+++.+++++...+.. .+.+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~------~i~~------------------- 85 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG------NIDI------------------- 85 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC------CeEE-------------------
Confidence 5679999999999999977665543 8999999999999999887533211 1223
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+.+....+ .++||+|++..... .+..+++.+.+.|+|||.+++..
T Consensus 86 ---~~~d~~~~~---~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 86 ---IPGEAPIEL---PGKADAIFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ---EecCchhhc---CcCCCEEEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 222221112 35799999876532 35678899999999999998854
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=110.06 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=100.1
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccH----HHHHHHHhcC-----C-cEEEEeCCHHHHHHHHHHhCC--CCCCC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP--ENHMA 207 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~----~t~~ll~~~~-----~-~v~~vD~s~~~l~~A~~~~~~--~~~~~ 207 (307)
.+-..+++.+...... ...+||.+||+||. ++..+..... . +|+++|+|..+++.|+.-.-. ....+
T Consensus 80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 3444455544332212 47899999999993 3332222221 2 799999999999999854322 11122
Q ss_pred cccccccceeecCcccccccccccC--ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC
Q 021836 208 PDMHKATNFFCVPLQGQREKNKKVG--SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 208 ~~~~~~~~~~~~d~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG 285 (307)
.......+++.... +...+.++ +..|.|.+.|+..+.. ..+.||+|+|.+++.+++.+....++.+++..|+||
T Consensus 159 ~~~~~~~ryF~~~~---~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 159 LPPELLRRYFERGG---DGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred CCHHHHhhhEeecC---CCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 22222233433221 11234443 7789999999987765 467899999999999999999999999999999999
Q ss_pred cEEEEEec
Q 021836 286 GFFVLKEN 293 (307)
Q Consensus 286 G~lii~e~ 293 (307)
|+|++...
T Consensus 235 G~LflG~s 242 (268)
T COG1352 235 GLLFLGHS 242 (268)
T ss_pred CEEEEccC
Confidence 99999543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=106.63 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||+|||+|.++..+..... +++++|+++.+++.+++++...+. ..+.+...++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~-------------- 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVE-------------- 103 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHH--------------
Confidence 467999999999999987655444 699999999999999988754321 02334444433
Q ss_pred eeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+... +++||+|++..+++|+. +...+++.+.+.|+|||.+++...
T Consensus 104 ---------~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 104 ---------DLAEKGAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ---------HhhcCCCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 23222 47899999999999998 568899999999999999988754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=104.90 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.++.+|||+|||+|..+..+ +.... +|+++|+++.+++.|++++...+.. .+.+...+..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~l-a~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~------~v~~~~~d~~---------- 138 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVL-AEIVGRDGLVVSIERIPELAEKAERRLRKLGLD------NVIVIVGDGT---------- 138 (215)
T ss_pred CCcCEEEEECCCccHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------CeEEEECCcc----------
Confidence 46789999999999999854 44433 4999999999999999988654321 2333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+ ...++||+|++.....++. +.+.+.|+|||.|++.-
T Consensus 139 ------------~~~-~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 ------------QGW-EPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred ------------cCC-cccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 222 2246899999876554433 45778899999998853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=107.18 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=80.0
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
++..++..+.... .....++|+|||+|..++ .++.++.+|+++|+|+.|++.|++.... .+
T Consensus 19 YPtdw~~~ia~~~------~~h~~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~------------~y 79 (261)
T KOG3010|consen 19 YPTDWFKKIASRT------EGHRLAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPV------------TY 79 (261)
T ss_pred CcHHHHHHHHhhC------CCcceEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCc------------cc
Confidence 3456777766521 123489999999996666 6788899999999999999999876532 11
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...+.. ... +-..++...+++.|+|+|..++|+++ +..+++.++++||+.|-++.+
T Consensus 80 ~~t~~~---------------ms~-~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 80 CHTPST---------------MSS-DEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccCCcc---------------ccc-cccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 111111 000 00013333378999999999998775 578999999999988744443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-11 Score=106.68 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||||||+|..+..+..... .+|+++|+++.+++.+++++...+.. ++.+...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~------~v~~~~g-------------- 134 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD------NVEVIVG-------------- 134 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CeEEEEC--------------
Confidence 4678999999999999985443322 38999999999999999988644321 2333333
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|....+ +..++||+|++.....++. ..+.+.|||||.|++..
T Consensus 135 --------d~~~~~-~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 --------DGTLGY-EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred --------CcccCC-CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 332233 2357899999877654332 35677899999998854
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=97.36 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=76.5
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.+|||+|||+|.++..++..+..+++++|+++..++.++.++...+. ...++++..|+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~---------------- 60 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDAR---------------- 60 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHH----------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchh----------------
Confidence 58999999999999987766645899999999999999988765432 123445555543
Q ss_pred eccCCcCCCC--CCCCceeeEEcchhhhhCC------hhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 239 AKKGISADFT--PETGRYDVIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 239 ~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~------~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+.. ...++||+|+++-.+.... ......+++++.+.|+|||.+++.-
T Consensus 61 -------~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 61 -------DLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -------HHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------hchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 221 2468999999986644321 1235788999999999999998864
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=106.04 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|.++..++..... +|+|+|+++.|++.|++++...++. ++.+...++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~------ni~~i~~d~~------------- 76 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK------NLHVLCGDAN------------- 76 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC------CEEEEccCHH-------------
Confidence 3468999999999999987766554 7999999999999998887543321 2444444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++...+ .+++++|.|++++...+.... ....+++.++++|||||.|++..
T Consensus 77 ------~~~~~~-~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 77 ------ELLDKF-FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ------HHHHhh-CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 000011 234689999987653222110 12578999999999999998853
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=107.55 Aligned_cols=103 Identities=24% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.+++..+.-+..+++|+|++|..++.|++++..++... ....-....
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~--------------- 221 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLL--------------- 221 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccc---------------
Confidence 678999999999999997666677789999999999999999986654421 000000000
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+..++||+|+++-. -+ -+..+...+.+.|||||+++++--
T Consensus 222 ---------~~~~~~~~~DvIVANIL-A~----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 222 ---------LEVPENGPFDVIVANIL-AE----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---------hhhcccCcccEEEehhh-HH----HHHHHHHHHHHHcCCCceEEEEee
Confidence 11112469999999752 22 467889999999999999999753
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-11 Score=106.92 Aligned_cols=96 Identities=21% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+...+..+|+++|+|+.+++.|++++...+.. .. +
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----~~----------------------~ 171 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-----LN----------------------V 171 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----ce----------------------E
Confidence 56899999999999998654444446999999999999999887543220 00 0
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+...+.+||+|+++... ..+..+++++.+.|||||.+++...
T Consensus 172 ---------~~~~~~~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 172 ---------YLPQGDLKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ---------EEccCCCCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 010012279999986432 2457789999999999999999764
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-11 Score=112.40 Aligned_cols=140 Identities=16% Similarity=0.297 Sum_probs=84.3
Q ss_pred hhcHHHHHHHHHhccCCC--ccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 135 IKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~--~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
++....++..++-..... ....++.+|||+|||-|.............++|+|++...++.|++++....-.......
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 344455665544322211 011267899999999888777677777889999999999999999988321100000000
Q ss_pred ccceeecCcccccccccccCccceeeeccCCc-----CCCCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCC
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGIS-----ADFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpG 285 (307)
...|. ..|..+|.. ..+.+...+||+|-|.+++||+ +.+....+|+++...|+||
T Consensus 118 ~~~f~------------------a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 118 RFDFI------------------AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp EECCE------------------EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cccch------------------hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 11111 123333222 1222224699999999999996 4445788999999999999
Q ss_pred cEEEEEe
Q 021836 286 GFFVLKE 292 (307)
Q Consensus 286 G~lii~e 292 (307)
|+||.+-
T Consensus 180 G~FIgT~ 186 (331)
T PF03291_consen 180 GYFIGTT 186 (331)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999863
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=87.61 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=75.0
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeee
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIA 239 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~ 239 (307)
+|+|+|||+|..+..++.....+++++|+++.+++.+++..... ....+.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------- 57 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAE----------------- 57 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChh-----------------
Confidence 48999999999999766534458999999999999988532211 1223444444443
Q ss_pred ccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 240 KKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 240 ~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.. ...++||+|++..+++++ ......+++.+.+.|+|||.+++.
T Consensus 58 ------~~~~~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 58 ------ELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ------hhccccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 222 135689999999998774 336789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-11 Score=105.57 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=79.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||+|||+|.++..+..+.. .++++||+.+.+.+.|+++..-.++ ..++.+++.|+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~------------- 105 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIK------------- 105 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHH-------------
Confidence 468999999999999996544434 3899999999999999998865443 234455555554
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchh----------------hhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWC----------------IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~----------------l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..... ...+||+|+|+-. -+|...-+++++++.+.++|||||.++++-
T Consensus 106 ---------~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 106 ---------EFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ---------HhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 22211 2347999998732 223333457899999999999999999864
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=102.08 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=71.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+.. ++....+|+++|+++.+++.+++++...++. .+.+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~-la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~------~v~~------------------- 130 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAV-LAHLVRRVFSVERIKTLQWEAKRRLKQLGLH------NVSV------------------- 130 (212)
T ss_pred CCCCEEEEECCCccHHHHH-HHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC------ceEE-------------------
Confidence 4678999999999999984 4555568999999999999999887654321 1233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...|....+. ..++||+|++...+.++ .+.+.+.|+|||.+++.-.
T Consensus 131 ---~~~d~~~~~~-~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 131 ---RHGDGWKGWP-AYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---EECCcccCCC-cCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 3333222332 24689999998765443 3457789999999988643
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=103.18 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+......+++++|+++.+++.+++++...+. .+.+...++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~d~~-------------- 94 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-------DVDVRRGDWA-------------- 94 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEECchh--------------
Confidence 5679999999999999976554444899999999999999987743211 1223333332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-------------------hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------------------~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. ...++||+|+++-...... ...+..+++++.+.|||||.+++...
T Consensus 95 ---------~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 95 ---------RA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ---------hh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 1356899999974322111 01256788999999999999998644
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-11 Score=99.82 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=77.2
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||+|||+|.+...++...++ .++|+|.|+.+++.|+..++..++.| .|+|
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n---------------------------~I~f 122 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN---------------------------EIRF 122 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc---------------------------ceeE
Confidence 9999999999999998888887 59999999999999988776544322 2556
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.|+... ....++||+|.--.++.-+ ....+.-.+..+.++|+|||+|+|+.-
T Consensus 123 ~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 123 QQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred EEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 66666543 2346789988854332211 111235568889999999999999753
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=107.30 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.+++..+..+..+|+++|+++.+++.|++++..+++.. .+.+ ....
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-----~~~v--~~~~-------------- 219 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-----RIEV--SLSE-------------- 219 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-----CEEE--SCTS--------------
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-----eEEE--EEec--------------
Confidence 567999999999999996555566689999999999999999987654421 1111 0111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. ..++||+|+++-.. +-+..++..+.+.|+|||+|+++-.
T Consensus 220 ---------~~--~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 220 ---------DL--VEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ---------CT--CCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ---------cc--ccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 22 24799999987543 2567888999999999999999743
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=103.65 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. ..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-----~~---------------------- 173 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-----DR---------------------- 173 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----Cc----------------------
Confidence 3468999999999999976655443 7999999999999999987543321 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh------h-------hhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~------l-------~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
|++.+.|....+ +.++||+|+++-. + +|-+. .....+++.+.+.|+|||.+++
T Consensus 174 i~~~~~D~~~~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 174 VTLIQSDLFAAL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred EEEEECchhhcc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 334444433233 2457999998621 1 11110 1246789999999999999987
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=100.57 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
+..++..++.... ..+.+|||+|||+|..+..++..... +++++|+++.+++.+++++...+.. .+.+
T Consensus 73 ~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~------~~~~ 141 (251)
T TIGR03534 73 TEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD------NVTF 141 (251)
T ss_pred hHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------eEEE
Confidence 3455555554321 13468999999999999987665443 7999999999999999887543221 1333
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh------hhCChh------------------HHH
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI------GHLTDD------------------DFV 272 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l------~~~~~~------------------dl~ 272 (307)
...+. ...+ +.++||+|+++..+ +++... ...
T Consensus 142 ~~~d~----------------------~~~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 197 (251)
T TIGR03534 142 LQSDW----------------------FEPL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYR 197 (251)
T ss_pred EECch----------------------hccC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHH
Confidence 33333 2222 35789999985322 111111 134
Q ss_pred HHHHHHHHcCCCCcEEEEEe
Q 021836 273 SFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii~e 292 (307)
.+++.+.+.|+|||.+++.-
T Consensus 198 ~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 198 RIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHhcccCCEEEEEE
Confidence 78899999999999998853
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=100.12 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++...+.. ..+.+...+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~v~~~~~d~~---------- 102 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NNIVLIKGEAP---------- 102 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CCeEEEEechh----------
Confidence 3467899999999999999765443 237999999999999999887544321 12333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+....++||+|++... ..++..+++.+.+.|+|||.+++
T Consensus 103 ------------~~l~~~~~~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 103 ------------EILFTINEKFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred ------------hhHhhcCCCCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 111112368999998542 22568899999999999999987
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-10 Score=97.75 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=80.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+.++.+|||||||+|+.+. ++++...+|+.+|..+...+.|++++...++.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n--------------------------- 121 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETLGYEN--------------------------- 121 (209)
T ss_pred CCCCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc---------------------------
Confidence 4578999999999999999 788888899999999999999999987655432
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|.+.+.|....++. ..+||.|+.......++ +.+.+.|||||.+++...
T Consensus 122 -V~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 122 -VTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -eEEEECCcccCCCC-CCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 44555555556653 57999999988765555 347778999999998654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=97.28 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+.. .+.++..+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~------~v~~~~~d~~------------ 100 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK------NVEVIEGSAP------------ 100 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------CeEEEECchH------------
Confidence 3668999999999999997654432 37999999999999999887543321 2334444332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+......+|.|+... ...+..+++++.+.|+|||.|++...
T Consensus 101 ----------~~~~~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 101 ----------ECLAQLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----------HHHhhCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 11111122356665432 12567889999999999999998754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=101.15 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
...++||||+|.|.+|.. ++..+++|+++|.|+.|....+++- |...+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~-l~~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~-------------- 143 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER-LAPLFKEVYATEASPPMRWRLSKKG---------------FTVLDID-------------- 143 (265)
T ss_pred cCCceEEecCCCcHHHHH-HHhhcceEEeecCCHHHHHHHHhCC---------------CeEEehh--------------
Confidence 457899999999999996 5788989999999999988776542 2233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++...+.+||+|.|-+++....+| ..+|+.+++.|+|+|.++++
T Consensus 144 ---------~w~~~~~~fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 ---------DWQQTDFKFDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---------hhhccCCceEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEE
Confidence 343335689999999999998844 89999999999999999985
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=99.09 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=96.1
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
+..-.||..++. ...+.+|||||.+.|+.+.+++.... .+++.+|.++++.+.|++++.+.++.+ .
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~-----~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD-----R 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc-----e
Confidence 556677777775 23568999999999999998777666 289999999999999999998776642 1
Q ss_pred cceee-cCcccccccccccCccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 214 TNFFC-VPLQGQREKNKKVGSKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 214 ~~~~~-~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+. .+.. ..+. ...++||+||.-. .+.+...++..+.++|+|||++++
T Consensus 113 i~~~~~gdal----------------------~~l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~- 164 (219)
T COG4122 113 IELLLGGDAL----------------------DVLSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVA- 164 (219)
T ss_pred EEEEecCcHH----------------------HHHHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEE-
Confidence 22222 1211 1121 2368999999743 355678999999999999998766
Q ss_pred eccCCCCcccCC
Q 021836 292 ENIARSGTFLLS 303 (307)
Q Consensus 292 e~~~~~~~~~d~ 303 (307)
||+...|.+.++
T Consensus 165 DNvl~~G~v~~~ 176 (219)
T COG4122 165 DNVLFGGRVADP 176 (219)
T ss_pred eecccCCccCCc
Confidence 999999988876
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=105.13 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||+||||+|..+..+++. ...+|+++|+++.+++.|++.+...+... ... .+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d----------------------~r 132 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDD----------------------PR 132 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccC----------------------Cc
Confidence 4579999999999999987765 34589999999999999998875321100 001 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++...-.+..... ..++++.+++.|+|||++++.
T Consensus 133 v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 133 VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 33444433222222357899999854322211111 278899999999999998873
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-10 Score=102.77 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
....++..+... .++.+|||||+|+|..+.+++.... .+|+.+|.++++.+.|+++++..++. ..+
T Consensus 105 ~~g~lL~~L~~~-------~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I 172 (278)
T PLN02476 105 DQAQLLAMLVQI-------LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKV 172 (278)
T ss_pred HHHHHHHHHHHh-------cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcE
Confidence 334556655542 2567999999999999997665432 27999999999999999999776542 234
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++...+.. +....+. ...++||+||.-. .+.....+++.+.+.|+|||.+++ |
T Consensus 173 ~li~GdA~-------------------e~L~~l~~~~~~~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~-D 227 (278)
T PLN02476 173 NVKHGLAA-------------------ESLKSMIQNGEGSSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVM-D 227 (278)
T ss_pred EEEEcCHH-------------------HHHHHHHhcccCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEE-e
Confidence 44444432 0000110 1136899999753 245678899999999999999666 9
Q ss_pred ccCCCCcccCCC
Q 021836 293 NIARSGTFLLSH 304 (307)
Q Consensus 293 ~~~~~~~~~d~~ 304 (307)
|+...|.+.|+.
T Consensus 228 NvL~~G~V~d~~ 239 (278)
T PLN02476 228 NVLWHGRVADPL 239 (278)
T ss_pred cCccCCcccCcc
Confidence 999999988764
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=102.33 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=80.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|+|||+|+|.++..++..++. +++..|. |..++.+++ . .+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~---------------------------------~r 144 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-A---------------------------------DR 144 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-T---------------------------------TT
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-c---------------------------------cc
Confidence 4568999999999999998888877 8999998 888888876 1 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC--cEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG--G~lii~e~~~~~~ 298 (307)
|++..+|....+ +. +|+|++.+++|++++++...+|+++++.|+|| |.|+|.|.+.++.
T Consensus 145 v~~~~gd~f~~~---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 145 VEFVPGDFFDPL---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEEES-TTTCC---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cccccccHHhhh---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 334444443232 33 99999999999999999999999999999999 9999999976554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=99.92 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=68.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+|||+|||+|.++..+..... .+|+++|+++.|++.+.+++... .++.++..+..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~----------- 130 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADAR----------- 130 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCC-----------
Confidence 45778999999999999997554432 37999999999999887665321 12233333332
Q ss_pred cceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~ 291 (307)
.. .....++||+|++. +.+++ ...+++++.+.|||||.|++.
T Consensus 131 -----------~~~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 131 -----------KPERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----------CcchhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 10 00113569999853 32222 345689999999999999993
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-10 Score=98.32 Aligned_cols=118 Identities=11% Similarity=-0.045 Sum_probs=85.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||..|||.|..+..|+..++. |+|+|+|+..++.+.+......... ....... .....|
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~--~~~~~~~--------------~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVI--HGNDYKL--------------YKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCccee--cccccce--------------eccCce
Confidence 4579999999999999988777775 9999999999999866432100000 0000000 012346
Q ss_pred eeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++.++|++. +.+ ..++||+|+-..++++++.+...+..+.+.++|+|||.+++..
T Consensus 106 ~~~~gD~f~-l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 106 EIYVADIFN-LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEEccCcC-CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 777777663 322 1368999999999999998889999999999999999887754
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=98.61 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=67.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+.......++++|+|+.+++.++++. +.++..++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~-------------~~~~~~d~~-------------- 65 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARG-------------VNVIQGDLD-------------- 65 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcC-------------CeEEEEEhh--------------
Confidence 45789999999999998655444446899999999999886421 234344433
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
..+. ..+++||+|+++.+++|+. +...+++++.+.+++
T Consensus 66 --------~~l~~~~~~sfD~Vi~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 66 --------EGLEAFPDKSFDYVILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred --------hcccccCCCCcCEEEEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 1121 2457899999999999998 568889988887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=101.92 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=72.3
Q ss_pred ceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+.. . +++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-----~----------------------~v~ 168 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-----H----------------------RVE 168 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----C----------------------cEE
Confidence 6899999999999997766554 38999999999999999987543221 1 133
Q ss_pred eeccCCcCCCCCCCCceeeEEcch-------------hhhhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQW-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~-------------~l~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
|.+.|....+ +.++||+|+++- +..|-+. .....+++.+.+.|+|||+|++
T Consensus 169 ~~~~d~~~~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 169 FIQSNLFEPL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred EEECchhccC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 4444433232 234799999862 1222211 1457889999999999999887
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=102.88 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=72.2
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+.. ..+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-----~~i~---------------------- 187 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-----DRVT---------------------- 187 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CcEE----------------------
Confidence 68999999999999977665543 7999999999999999987543321 1233
Q ss_pred eeccCCcCCCCCCCCceeeEEcchh------h-------hhCCh----------hHHHHHHHHHHHcCCCCcEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~------l-------~~~~~----------~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.+.|....+ +.++||+|+++-. + +|-+. .....+++.+.+.|+|||.+++
T Consensus 188 ~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 188 LIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred EEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4444432233 2457999998621 1 11110 1246889999999999999988
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=100.36 Aligned_cols=129 Identities=18% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
..+|..+.... ++.+||||||++|+.+.+++.... .+|+.+|+++...+.|++.+...++ ..++++
T Consensus 34 g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~ 101 (205)
T PF01596_consen 34 GQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEV 101 (205)
T ss_dssp HHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEE
T ss_pred HHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEE
Confidence 45666655422 567999999999999998776554 3899999999999999998865443 234444
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...+.. +....+.. ..++||+||.-. .+.+...++..+.+.|+|||.+++ ||+
T Consensus 102 ~~gda~-------------------~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~-DN~ 156 (205)
T PF01596_consen 102 IEGDAL-------------------EVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIA-DNV 156 (205)
T ss_dssp EES-HH-------------------HHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEE-ETT
T ss_pred EEeccH-------------------hhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEE-ccc
Confidence 444432 00001110 135899999854 345678889999999999998766 999
Q ss_pred CCCCcccCCC
Q 021836 295 ARSGTFLLSH 304 (307)
Q Consensus 295 ~~~~~~~d~~ 304 (307)
...|.++++.
T Consensus 157 l~~G~V~~~~ 166 (205)
T PF01596_consen 157 LWRGSVADPD 166 (205)
T ss_dssp TGGGGGGSTT
T ss_pred cccceecCcc
Confidence 9999888763
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-10 Score=95.31 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+..+ ..+.+...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~~----------------- 80 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN----NGVEVIRS----------------- 80 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC----cceEEEec-----------------
Confidence 5678999999999999977665 5579999999999999988875432211 00223333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhC-------------------ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHL-------------------TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-------------------~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|....+ ..++||+|+++..+... ....+..+++++.++|||||.+++...
T Consensus 81 -----d~~~~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 81 -----DLFEPF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred -----cccccc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 322222 23479999976432210 012357789999999999999887643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=102.72 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=76.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+..+||||||+|..+..++..... .++|+|+++.+++.+.+++...+.. ++.++..|+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~------NV~~i~~DA~------------- 182 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK------NLLIINYDAR------------- 182 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC------cEEEEECCHH-------------
Confidence 3458999999999999987766654 8999999999999999887654332 2334444432
Q ss_pred eeeeccCCcCCC-CCCCCceeeEEcchhhhhCChh----HHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~----dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.-+ ..+++++|.|++++..-+.... ....++..++++|+|||.+.+.
T Consensus 183 ---------~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 183 ---------LLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred ---------HhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 111 1346899999986543221111 1268999999999999999884
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-10 Score=94.53 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=65.5
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 184 ~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
+|+|+|+.|++.|+++....... ....+++...+.+ +++.++++||+|++.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~-----------------------~lp~~~~~fD~v~~~~~l 54 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAI-----------------------DLPFDDCEFDAVTMGYGL 54 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechh-----------------------hCCCCCCCeeEEEecchh
Confidence 58999999999998765321100 0123455555554 666667899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 264 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 264 ~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
+++. +...++++++++|||||.|++.|...++
T Consensus 55 ~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 55 RNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred hcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9998 6799999999999999999999876544
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-10 Score=97.43 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||||.++..++.... .+|+++|+++ |. .. ..+.+++.|+...+...+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~-----------~~v~~i~~D~~~~~~~~~----- 108 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI-----------VGVDFLQGDFRDELVLKA----- 108 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC-----------CCcEEEecCCCChHHHHH-----
Confidence 567999999999999997766643 3799999988 21 00 123455555540000000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh--H-------HHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--d-------l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. -....++||+|++..+.++...+ + ...+++.+.++|+|||.|++...
T Consensus 109 --------i~--~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 109 --------LL--ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred --------HH--HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 00 01235789999997655443321 1 25689999999999999999643
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=94.36 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=68.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||.|.+...+.....-+..|+|+++..+..|.++- +++++.|++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG-------------v~Viq~Dld-------------- 65 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG-------------VSVIQGDLD-------------- 65 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC-------------CCEEECCHH--------------
Confidence 78999999999999998765544447999999999988886653 345555554
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcC
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 282 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~L 282 (307)
..+. +++++||.|+++.++.++..+ ..+|+++.++-
T Consensus 66 --------~gL~~f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRVg 102 (193)
T PF07021_consen 66 --------EGLADFPDQSFDYVILSQTLQAVRRP--DEVLEEMLRVG 102 (193)
T ss_pred --------HhHhhCCCCCccEEehHhHHHhHhHH--HHHHHHHHHhc
Confidence 2332 468999999999999999854 77888887663
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=103.85 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=76.9
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
.+..+++.++... .++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++...+ ..+.
T Consensus 237 eTE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~ 303 (423)
T PRK14966 237 ETEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVE 303 (423)
T ss_pred cHHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEE
Confidence 3445555555422 13468999999999999976655443 79999999999999999875321 1233
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CC----------------h--hHHH
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LT----------------D--DDFV 272 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~----------------~--~dl~ 272 (307)
+ .+.|+.....+..++||+|+|+-.... .. + ....
T Consensus 304 f----------------------i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr 361 (423)
T PRK14966 304 F----------------------AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIR 361 (423)
T ss_pred E----------------------EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHH
Confidence 3 333332221112457999998643110 00 0 1245
Q ss_pred HHHHHHHHcCCCCcEEEE
Q 021836 273 SFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii 290 (307)
.+++.+.+.|+|||.+++
T Consensus 362 ~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 362 TLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHHHHHHhcCCCcEEEE
Confidence 778888899999999876
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=98.25 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
....|+..++.. .+..+|||||+++|+.+.+++.... .+|+.+|.++...+.|++.+...++. ..+
T Consensus 66 ~~g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I 133 (247)
T PLN02589 66 DEGQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKI 133 (247)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----Cce
Confidence 334666666652 2457999999999999997765443 28999999999999999998766542 234
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+...+.. +....+.. ..++||+||.-.- +.....++..+.+.|+|||+|++
T Consensus 134 ~~~~G~a~-------------------e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~- 188 (247)
T PLN02589 134 DFREGPAL-------------------PVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY- 188 (247)
T ss_pred EEEeccHH-------------------HHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-
Confidence 44444332 00001110 1368999997532 44567888899999999999555
Q ss_pred eccCCCCcccCCC
Q 021836 292 ENIARSGTFLLSH 304 (307)
Q Consensus 292 e~~~~~~~~~d~~ 304 (307)
||+...|.++|++
T Consensus 189 DNvl~~G~v~~~~ 201 (247)
T PLN02589 189 DNTLWNGSVVAPP 201 (247)
T ss_pred cCCCCCCcccCcc
Confidence 9999999988864
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=93.29 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+++|||||||.++..++..... +|+++|-++++++..+++....+..| +.....+..
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n------~~vv~g~Ap----------- 94 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN------LEVVEGDAP----------- 94 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc------EEEEeccch-----------
Confidence 558899999999999999987643433 89999999999999999887654332 223233222
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.+...+ ++|.||....- .+..+++.+...|||||.+++-
T Consensus 95 -----------~~L~~~~-~~daiFIGGg~------~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 95 -----------EALPDLP-SPDAIFIGGGG------NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred -----------HhhcCCC-CCCEEEECCCC------CHHHHHHHHHHHcCcCCeEEEE
Confidence 2332222 79999998762 6688999999999999999884
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=99.47 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..... +++++|+++.+++.|++++...+. ..+++++..|..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~------------- 127 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGA------------- 127 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHH-------------
Confidence 4578999999999999976665544 799999999999999988743110 123344444432
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh-hhhCCh-hHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC-IGHLTD-DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~-l~~~~~-~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+....++||+|++... -...+. -...++++.+.+.|+|||++++
T Consensus 128 ---------~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 128 ---------EYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred ---------HHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 122222468999997521 011111 0127899999999999999988
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=97.64 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++. ... ...+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~-------------------- 161 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-----GARVE-------------------- 161 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----CCcEE--------------------
Confidence 567999999999999997766553 379999999999999998874 100 11233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhh------hCC------------------hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIG------HLT------------------DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~------~~~------------------~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+...|+.... ..++||+|+++.... .+. -.....+++++.+.|+|||++++.
T Consensus 162 --~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 162 --FLQGDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred --EEEccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3333332222 246899999853211 010 012467889999999999999883
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=101.55 Aligned_cols=108 Identities=14% Similarity=-0.049 Sum_probs=77.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+++.+|||+|||+|.++... .....+++|+|+++.|+..++.++...+..+ +.+...|+.
T Consensus 181 ~~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~------i~~~~~D~~------------- 240 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEHYGIED------FFVKRGDAT------------- 240 (329)
T ss_pred CCcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC------CeEEecchh-------------
Confidence 36779999999999998864 3344579999999999999998886544321 344455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhh-------CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGH-------LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-------~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..+++||+|+++..... ........+++.+.+.|+|||++++.-.
T Consensus 241 ----------~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 241 ----------KLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ----------cCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 44444678999998633211 1112257899999999999999887643
|
This family is found exclusively in the Archaea. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=91.29 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||||||||..+.++...+.. ...-.|+++..+...+......+..|..... ..|+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-----~lDv~---------------- 86 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-----ALDVS---------------- 86 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-----EeecC----------------
Confidence 5999999999999987776665 5677888888877777666555444322111 22221
Q ss_pred eccCCcCC-CC------CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 239 AKKGISAD-FT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 239 ~~~d~~~~-~~------~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
.. ++ ...++||.|+|.+++|-++....+.+|+.+.++|+|||.|++--....+|.+
T Consensus 87 ------~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 87 ------APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred ------CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 11 11 1356899999999999999888999999999999999999998777666644
|
The function of this family is unknown. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.3e-09 Score=93.52 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=71.1
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+ .++++.|+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~-------------- 143 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLY-------------- 143 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeech--------------
Confidence 458999999999999976655433 79999999999999999875321 134444433
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhh------hhCCh------------------hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCI------GHLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l------~~~~~------------------~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
..+.. ..++||+|+++-.. ..+.+ +-+..+++.+.+.|+|||.+++.
T Consensus 144 --------~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 --------DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred --------hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11110 13579999987421 11111 01458888999999999999975
Q ss_pred e
Q 021836 292 E 292 (307)
Q Consensus 292 e 292 (307)
-
T Consensus 216 ~ 216 (251)
T TIGR03704 216 T 216 (251)
T ss_pred E
Confidence 3
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=97.27 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+...... ....+++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~-------------------- 129 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVD-------------------- 129 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceE--------------------
Confidence 34599999999999998877665 458999999999999999876432100 0011222
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
+...|....+....++||+|++........... ..++++.+.+.|+|||.+++.
T Consensus 130 --i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 130 --LQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred --EEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 222222111111246899999865421111112 368899999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=97.96 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+|||+|||+|.++..+..... ..|+++|+++.+++.|++++...+.. .+.+...|..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~------nV~~i~gD~~----------- 141 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE------NVIFVCGDGY----------- 141 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC------cEEEEeCChh-----------
Confidence 3568999999999999996554432 25999999999999999887654321 1233333332
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+..++||+|++...+.++ ...+.+.|+|||.+++...
T Consensus 142 ------------~~~~~~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 142 ------------YGVPEFAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ------------hcccccCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEeC
Confidence 222234679999987654433 2346778999999888543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-10 Score=97.90 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.+++.+|||||||+|+.+. +++.... .|+++|..+...+.|++++...+..
T Consensus 70 l~pg~~VLeIGtGsGY~aA-lla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~------------------------- 123 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAA-LLAHLVGPVGRVVSVERDPELAERARRNLARLGID------------------------- 123 (209)
T ss_dssp C-TT-EEEEES-TTSHHHH-HHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-------------------------
T ss_pred cCCCCEEEEecCCCcHHHH-HHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-------------------------
Confidence 4588999999999999999 5666543 6999999999999999998643321
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+|++...|....++ ...+||.|++......++ ..+.+.|++||.+++.-.
T Consensus 124 ---nv~~~~gdg~~g~~-~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 124 ---NVEVVVGDGSEGWP-EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ---SEEEEES-GGGTTG-GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred ---ceeEEEcchhhccc-cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 23344444333443 356899999987764433 347778999999998544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-09 Score=89.71 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++.. ..++.++..|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~-------------- 69 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL-------------- 69 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh--------------
Confidence 5678999999999999987766 55799999999999999988742 113445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+..+..+||.|+++-.+ |...+.+..+++.. .+.++|+|++
T Consensus 70 ---------~~~~~~~~~d~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 70 ---------KFDLPKLQPYKVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred ---------cCCccccCCCEEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEE
Confidence 444444569999987654 44433444444432 2447777766
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-09 Score=94.54 Aligned_cols=104 Identities=14% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+..+|||+|||+|.++..++.... ..|+++|+++.|.+...+..... .++.++..|+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~---------- 191 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDAR---------- 191 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCcc----------
Confidence 45778999999999999997655442 37999999998665444433210 12233333332
Q ss_pred ccceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.. +....++||+|++... . . ++...++.++.+.|||||.|++..
T Consensus 192 ------------~p~~y~~~~~~vDvV~~Dva--~-p-dq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 192 ------------YPQKYRMLVPMVDVIFADVA--Q-P-DQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred ------------ChhhhhcccCCCCEEEEeCC--C-c-chHHHHHHHHHHhccCCCEEEEEE
Confidence 11 1112347999998764 1 1 244566778999999999999943
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=109.15 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ...+.++..|..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~-------------- 599 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCL-------------- 599 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHH--------------
Confidence 35789999999999999876665668999999999999999998654431 013344444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh-hhh--------CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC-IGH--------LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~-l~~--------~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+....++||+|++.-. +.. -...+...++..+.++|+|||.+++..+
T Consensus 600 --------~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 600 --------AWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred --------HHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 111111468999998522 100 0012467789999999999999988544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=99.30 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
++....|+..++-... .++...++++|||-|...+..-+.+.+.++|+|++...++.|++++...... ..
T Consensus 99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r----~~-- 168 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR----FK-- 168 (389)
T ss_pred hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh----hh--
Confidence 4455667777654333 2366789999999999888777788889999999999999999887532100 00
Q ss_pred ceeecCcccccccccccCccceeeeccCCc-----CCCCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCCcE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGIS-----ADFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGF 287 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpGG~ 287 (307)
.|. -++.|+.+|-+ ..+.+.+.+||+|-|.+++||. +.+...-++.++.+.|+|||+
T Consensus 169 ~~~----------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 169 KFI----------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred ccc----------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 000 01123322211 1222234459999999999984 334567889999999999999
Q ss_pred EEEE
Q 021836 288 FVLK 291 (307)
Q Consensus 288 lii~ 291 (307)
||-+
T Consensus 233 FIgT 236 (389)
T KOG1975|consen 233 FIGT 236 (389)
T ss_pred EEEe
Confidence 9875
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=96.44 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=70.6
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. ++. +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~------~~~----------------------~ 164 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV------RVL----------------------V 164 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc------cEE----------------------E
Confidence 7999999999999987666664 8999999999999999998765431 111 1
Q ss_pred eccCCcCCCCCCCCceeeEEcchhh-----hhCCh------------------hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCI-----GHLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l-----~~~~~------------------~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+.|++... .++||+|++|-.. .+..+ +....++..+.+.|+|||++++-
T Consensus 165 ~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 165 VQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred Eeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 222222222 4589999987320 00100 13467889999999999988873
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=94.83 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||+|||+|.++..++.+. ..+|+++|+++.|++.++++.. .+.+++.|+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~------------- 119 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVF------------- 119 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchh-------------
Confidence 34689999999999988665554 3489999999999999987642 2344455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH------------------HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d------------------l~~~l~~l~~~LkpGG~lii~ 291 (307)
.+.. .++||+|+++-.+.+....+ +.++++.....|+|+|.+++.
T Consensus 120 ----------e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 120 ----------EFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ----------hhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 3322 46899999987777654322 246677788899999977664
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=101.10 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. .+.+.+.|..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~------~v~~~~~D~~---------- 313 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK------SIKILAADSR---------- 313 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC------eEEEEeCChh----------
Confidence 34678999999999999997665532 37999999999999999988665432 2344444443
Q ss_pred ccceeeeccCCcCCCC----CCCCceeeEEcc------hhhhhCCh-------hH-------HHHHHHHHHHcCCCCcEE
Q 021836 233 SKKVKIAKKGISADFT----PETGRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~----~~~~~fDlIi~~------~~l~~~~~-------~d-------l~~~l~~l~~~LkpGG~l 288 (307)
.+. ...++||.|++. .++++-++ .+ ..+++.++.+.|||||.|
T Consensus 314 -------------~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~l 380 (434)
T PRK14901 314 -------------NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTL 380 (434)
T ss_pred -------------hcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 221 124689999953 23333221 11 368899999999999999
Q ss_pred EEEec
Q 021836 289 VLKEN 293 (307)
Q Consensus 289 ii~e~ 293 (307)
+.+..
T Consensus 381 vystc 385 (434)
T PRK14901 381 VYATC 385 (434)
T ss_pred EEEeC
Confidence 87654
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-09 Score=96.34 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+||+||||.|.++..+++.. ..+|+.+|+++.+++.|++.+...+.. .... +
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dp----------------------R 146 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDP----------------------R 146 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCC----------------------c
Confidence 56799999999999999876542 348999999999999999987532110 0112 3
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii 290 (307)
++++..|....+.. +.++||+|++...-.+..... -.++++.+.+.|+|||++++
T Consensus 147 v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 147 VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 34444432211111 246899999854322111111 26789999999999999876
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=104.18 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=71.2
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++. .. |
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-----~~----------------------v 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-----DR----------------------I 191 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-----cc----------------------e
Confidence 468999999999999977665543 8999999999999999887543221 12 3
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh--------------hhhCC-------h---hHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC--------------IGHLT-------D---DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~--------------l~~~~-------~---~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.+.|....+ ..++||+|+++-. ..|-+ . .....+++.+.+.|+|||.+++
T Consensus 192 ~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 192 QIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred eeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 33444432222 2458999998521 11110 0 1245678899999999999987
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=90.18 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=73.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.-|||||||+|..+..+...+ ...+|+|+|+.|++.|.+.--+ .++.-.|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-----------gdlil~DM--------------- 102 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-----------GDLILCDM--------------- 102 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-----------cCeeeeec---------------
Confidence 46789999999999988544444 5699999999999999863211 12333333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhh---------hCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~---------~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+.+++.++.||-+++...+. |.+...+..|+..++..|++|+..++
T Consensus 103 -------G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 103 -------GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred -------CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 237777889999988653322 33445578899999999999999887
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-09 Score=91.00 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++..... +|+++|+|+.+ .. ..+.+.+.++...+...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------~~i~~~~~d~~~~~~~~----- 88 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------ENVDFIRGDFTDEEVLN----- 88 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------CCceEEEeeCCChhHHH-----
Confidence 46789999999999999976655433 69999999854 11 11234444433000000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchh--------hhhCC-hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWC--------IGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~--------l~~~~-~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. . ....++||+|++..+ +.|.. ......++..+.+.|+|||.+++.
T Consensus 89 --------~l~-~-~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 89 --------KIR-E-RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --------HHH-H-HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 000 0 012467999998543 21211 113478899999999999999984
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-09 Score=97.09 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||++|||+|..+..+++.. ..+|++||+++.|++.|++...-..+ + ...+. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-~----------~~~~~----------DpR 208 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-N----------KSAFF----------DNR 208 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-c----------cccCC----------CCc
Confidence 45799999999999988777643 35899999999999999962110000 0 00000 123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhh--h-hCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCI--G-HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l--~-~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++...|....+....++||+|++...- . ....---.++++.+++.|+|||+|++...
T Consensus 209 V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 209 VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 4444444332232235689999986321 0 11111126799999999999999988643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=98.52 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. +.+.+.|..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-------~~~~~~D~~------------ 303 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-------ATVIVGDAR------------ 303 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eEEEEcCcc------------
Confidence 4678999999999999998776654 38999999999999999988654321 234444433
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchh------hhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWC------IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~------l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
... ...++||.|++.-. +.+ ....+ ...++..+.+.|||||.++++.
T Consensus 304 -----------~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 304 -----------DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred -----------cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 211 12467999994321 111 11111 3578999999999999999876
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 373 c 373 (427)
T PRK10901 373 C 373 (427)
T ss_pred C
Confidence 4
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.6e-09 Score=99.20 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++..+++. ...+.++..|+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~-------------- 281 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVF-------------- 281 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHH--------------
Confidence 45789999999999998655555558999999999999999998654431 012344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-------hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-------~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+....+....++||+|++.-..---+. .+...++..+.++|+|||.|+...+
T Consensus 282 -----~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 282 -----KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred -----HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 000011112457999998733100111 1356677788999999999998654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=98.72 Aligned_cols=111 Identities=19% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. ..+.+...+..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~----------- 299 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR----------- 299 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc-----------
Confidence 34678999999999999997665443 48999999999999999998654331 01111122211
Q ss_pred cceeeeccCCcCCCCC--CCCceeeEEcc------hhhhhCCh-------h-------HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTP--ETGRYDVIWVQ------WCIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~--~~~~fDlIi~~------~~l~~~~~-------~-------dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.... ..++||.|++. .++++.++ . ....+|..+.+.|||||.|+++
T Consensus 300 ------------~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 300 ------------GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred ------------cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 35689999952 33444331 1 1367899999999999999997
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
..
T Consensus 368 tc 369 (426)
T TIGR00563 368 TC 369 (426)
T ss_pred eC
Confidence 54
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-09 Score=92.99 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+||..|||.|.....++..++ +|+|+|+|+..++.+.+....... ........ .....+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~-----~~~~~~~~-----------~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPT-----VTSVGGFK-----------RYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEE-----CTTCTTEE-----------EETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCC-----ccccccee-----------eecCCc
Confidence 3667999999999999998777666 699999999999998544321000 00000000 012346
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
|++.++|++.--....++||+|+=..+++-++.+...+..+.+.++|+|||.+++
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 7888888764322223689999988888888888899999999999999999433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=98.89 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...++. .+.+.+.+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~------~v~~~~~Da~----------- 311 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT------IIETIEGDAR----------- 311 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC------eEEEEeCccc-----------
Confidence 356899999999999988655443 237999999999999999988654331 2334444433
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcc------hhhh-------hCChhH-------HHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~------~~l~-------~~~~~d-------l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. +.++||+|++. .++. +.+..+ ...++..+.+.|||||.+++...
T Consensus 312 ------------~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 312 ------------SFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ------------ccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 332 34689999952 1111 112222 24689999999999999999764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=92.59 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~------~v~~~~~D~~---------- 132 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL------NVAVTNFDGR---------- 132 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC------cEEEecCCHH----------
Confidence 34678999999999999997655442 37999999999999999998655432 1333333332
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcch------hhhh-------CChh-------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQW------CIGH-------LTDD-------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~------~l~~-------~~~~-------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+....++||+|++.- ++.+ .+.. ...++|+.+.+.|||||+|+.+.
T Consensus 133 -------------~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 133 -------------VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred -------------HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2222235699998531 1111 1111 22568999999999999998875
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 200 c 200 (264)
T TIGR00446 200 C 200 (264)
T ss_pred C
Confidence 4
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=90.47 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCC-CCccc-----ccccceeecCcc-cccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-MAPDM-----HKATNFFCVPLQ-GQREKN 228 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~-~~~~~-----~~~~~~~~~d~~-~~~~~~ 228 (307)
.+..+|||||..|.+|..+.+.... .|.|+||++..+..|++.+.-..- ..... .....+.....+ ..+...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 5678999999999999976655433 799999999999999988753211 00000 000011000000 000000
Q ss_pred cccCccceeeeccCCcCC---C-CCCCCceeeEEcchh--hhhC--ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 229 KKVGSKKVKIAKKGISAD---F-TPETGRYDVIWVQWC--IGHL--TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~---~-~~~~~~fDlIi~~~~--l~~~--~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.....++-|...+...+ + ......||+|+|-.+ ..|+ .|+-+..++++++++|.|||+|++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111122222222221111 1 123568999998532 2244 445699999999999999999988
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=97.97 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+|||+|..|..++... ..+|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~------~v~~~~~Da~---------- 298 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS------SIEIKIADAE---------- 298 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC------eEEEEECchh----------
Confidence 3467899999999999998766554 348999999999999999998655432 1334344433
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcch------hhhh-------CChh-------HHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQW------CIGH-------LTDD-------DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~------~l~~-------~~~~-------dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ...++||.|++.- ++.+ .+.. ...+++.++.+.|||||.++++
T Consensus 299 -------------~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 299 -------------RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred -------------hhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 222 1246799999631 1111 1111 2367799999999999999886
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
..
T Consensus 366 TC 367 (431)
T PRK14903 366 TC 367 (431)
T ss_pred EC
Confidence 54
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-09 Score=92.40 Aligned_cols=101 Identities=17% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
....++|||||-|.+...+......+++.+|.|-.|++.++..-. ..-...++..|-+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--------p~i~~~~~v~DEE-------------- 129 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--------PSIETSYFVGDEE-------------- 129 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--------CceEEEEEecchh--------------
Confidence 345799999999999999988899899999999999999875421 1122333344433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+++.++++|+|+++..+|+.+ ++...+.+|+..|||+|.|+-
T Consensus 130 ---------~Ldf~ens~DLiisSlslHW~N--dLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 130 ---------FLDFKENSVDLIISSLSLHWTN--DLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ---------cccccccchhhhhhhhhhhhhc--cCchHHHHHHHhcCCCccchh
Confidence 5556789999999999998888 889999999999999999875
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=97.28 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+.. .+.+.+.|..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~------~v~~~~~D~~----------- 311 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT------NIETKALDAR----------- 311 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------eEEEEeCCcc-----------
Confidence 356799999999999999776654 348999999999999999988654432 1334444433
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcchh------hhhC-------ChhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQWC------IGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~------l~~~-------~~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ...++||+|++.-. +.+- +..+ ...++..+.+.|||||.|+.+.
T Consensus 312 ------------~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 312 ------------KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ------------cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 221 11268999996421 1111 1111 2468999999999999999754
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 380 c 380 (444)
T PRK14902 380 C 380 (444)
T ss_pred C
Confidence 3
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=87.45 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++++...+|+++|.++.+++.+++++...+.. .+.+++.|+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~------~v~~~~~D~~-------------- 112 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG------NARVVNTNAL-------------- 112 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC------cEEEEEchHH--------------
Confidence 45699999999999998767777779999999999999999887654321 2334444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii~e 292 (307)
..+....++||+|++.-.+.. . -...+++.+.. .|+|+|++++..
T Consensus 113 --------~~l~~~~~~fDlV~~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 113 --------SFLAQPGTPHNVVFVDPPFRK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --------HHHhhcCCCceEEEECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 122112346999999766321 1 23455565555 489999888753
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=99.35 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHh--CCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..+++... .+|+++|+++++++.++++. ...+... -..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~-~~d---------------------- 353 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA-LDD---------------------- 353 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc-cCC----------------------
Confidence 467999999999999998776533 58999999999999999842 2110000 001
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh---HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~---dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++++++..|........+++||+|++...-...+.. --.++++.+.+.|||||.+++.
T Consensus 354 prv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 354 PRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 223344444332222224689999987542211100 1256899999999999999874
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=87.89 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=66.9
Q ss_pred CceEEEEeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~----~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++... ..+...|+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~----------- 107 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADAL----------- 107 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchh-----------
Confidence 5799999999999999765542 22799999999999999977531 334455543
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCC----------hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLT----------DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~----------~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.... +++||+|+++-.+.-.. ..-...++.++.+++++|+. |+-
T Consensus 108 ------------~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 108 ------------TTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred ------------cccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 2222 46899999985433111 11245688899986666664 553
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=85.62 Aligned_cols=131 Identities=20% Similarity=0.274 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+.++..++...- +...-.+..|||+|||+|.++..++....+ .++++|.|+.++..|.+++...++.+ .+.
T Consensus 129 ETEE~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-----~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-----RIE 202 (328)
T ss_pred cHHHHHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-----ceE
Confidence 44566666665321 111124457999999999999988777665 79999999999999999887665532 222
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh--------------------------h
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD--------------------------D 269 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~--------------------------~ 269 (307)
..+..++ .+.....+...+++|+++++-. |+.+ +
T Consensus 203 v~~~~me------------------~d~~~~~~l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 203 VIHNIME------------------SDASDEHPLLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred EEecccc------------------cccccccccccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhH
Confidence 2222222 1111122223588999998733 1111 1
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+..++.-+.++|+|||.+.+--+
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEec
Confidence 234667788899999999988544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=87.58 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=56.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+...|.|+|||.+.++.. +.... .|...|.-+. +-.+..+|+.
T Consensus 72 ~~~viaD~GCGdA~la~~-~~~~~-~V~SfDLva~---------------------n~~Vtacdia-------------- 114 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKA-VPNKH-KVHSFDLVAP---------------------NPRVTACDIA-------------- 114 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------------STTEEES-TT--------------
T ss_pred CCEEEEECCCchHHHHHh-cccCc-eEEEeeccCC---------------------CCCEEEecCc--------------
Confidence 457999999999999974 33223 4899997321 1124456665
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..|.++++.|+++++.+|.. .++..++.++.++|||||.|.|+|..
T Consensus 115 ---------~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 115 ---------NVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ---------S-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ---------cCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEec
Confidence 66777899999999887643 26789999999999999999999874
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-08 Score=87.49 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=66.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
....|.|+|||-+.++. .....|+..|+-+ .+-++..+|+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~-------------- 220 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMR-------------- 220 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeecccc--------------
Confidence 56789999999998875 3344688888721 11234456666
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.++++.|+++++.+|.. .++..++.++.++|+|||.++|.|.
T Consensus 221 ---------~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 221 ---------NVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ---------CCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEeh
Confidence 66667899999998777632 3789999999999999999999986
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=92.48 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++ ....+|+++|+|+.|++.|++++...+.. .+.++..++..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la-~~~~~V~gvD~s~~al~~A~~n~~~~~~~------~v~~~~~d~~~------------ 356 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLA-RQAAEVVGVEGVEAMVERARENARRNGLD------NVTFYHANLEE------------ 356 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEEeChHH------------
Confidence 356799999999999999754 44568999999999999999887544321 24455554430
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
........+++||+|++.-.-. .....++.+.+ ++|+++++++=|
T Consensus 357 -------~l~~~~~~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 357 -------DFTDQPWALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred -------hhhhhhhhcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 0001112245799999864321 12344555555 689999888744
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=84.30 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|+|.|.|+|.++..++.... .+|+.+|+-+.+.+.|++++...++.+ .+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d-----~v~----------------- 149 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD-----RVT----------------- 149 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc-----ceE-----------------
Confidence 45889999999999999997654322 389999999999999999997654432 122
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...|+.+... .+.||.|+. .++ +.-+++..++.+|+|||.+++.-.
T Consensus 150 -----~~~~Dv~~~~~--~~~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 150 -----LKLGDVREGID--EEDVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -----EEecccccccc--ccccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 23333333332 348999987 445 558899999999999999988543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=100.48 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=77.0
Q ss_pred CceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++..++... . ..... +...+....+|
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~---~------~~~~~---~~~~~~l~~rV 186 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDD---D------GLPVY---DGEGKTLLDRV 186 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccc---c------ccccc---ccccccccccE
Confidence 45899999999999997766654 389999999999999999885432110 0 00000 00000112457
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh--------------hhhCC------------------hh----HHHHHHHHHHH
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC--------------IGHLT------------------DD----DFVSFFKRAKV 280 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~--------------l~~~~------------------~~----dl~~~l~~l~~ 280 (307)
+|.+.|+...+.....+||+|+++-. ..|-+ ++ -.+.++..+.+
T Consensus 187 ~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~ 266 (1082)
T PLN02672 187 EFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS 266 (1082)
T ss_pred EEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH
Confidence 78888776544221237999998622 10100 01 13678888999
Q ss_pred cCCCCcEEEE
Q 021836 281 GLKPGGFFVL 290 (307)
Q Consensus 281 ~LkpGG~lii 290 (307)
.|+|||++++
T Consensus 267 ~L~pgG~l~l 276 (1082)
T PLN02672 267 VIKPMGIMIF 276 (1082)
T ss_pred hccCCCEEEE
Confidence 9999998886
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-07 Score=75.86 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+.+.-|||+|.|||.+|..+|+++.. .++++|.|+++.....+.+...+ ++..+..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-----------ii~gda~---------- 104 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-----------IINGDAF---------- 104 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-----------ccccchh----------
Confidence 346678999999999999999998865 79999999999999999886543 3333332
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++...+. .....||.|+|.-.+..++-....++++.+...|.+||.++-..-
T Consensus 105 ---------~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 105 ---------DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred ---------hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 0000011 135679999999888888766778999999999999999887543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.3e-08 Score=81.85 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+... ...+|+.+|.++ .++.++.++..++.. ....+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~---~~~~v~-------------------- 100 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL---LDGRVS-------------------- 100 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------E--------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc---cccccc--------------------
Confidence 6689999999999999954433 255899999998 999998887654210 011222
Q ss_pred eeeeccCCcCCC---CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~---~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...+..... .....+||+|+++.++.. +.....+++.+.++|+|+|.+++.-.
T Consensus 101 --v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 101 --VRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp --EEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred --CcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2222221111 012468999999999865 34678999999999999998777654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=87.13 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++..|||+|||||.++..-+..+..+|++||.|. +.+.|++.+..+++. ..+.++...++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-----~ii~vi~gkvE-------------- 119 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-----DVITVIKGKVE-------------- 119 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-----ceEEEeecceE--------------
Confidence 5689999999999999966666777999999876 458888888766553 24555555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+...+.++.|+|++-|.=..+- +.-+..++-.=-+.|+|||.++=
T Consensus 120 ---------di~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 120 ---------DIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ---------EEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 3333357999999876532221 11345555555689999998753
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-07 Score=84.86 Aligned_cols=110 Identities=20% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||.||+|.|..+..+++.. ..+|+.||+++.+++.|++.+....-. -.. .+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~d----------------------pr 158 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCD----------------------KR 158 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccC----------------------Cc
Confidence 45789999999999999877743 458999999999999999887532100 001 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh--hhhCChhH--HHHHHH-HHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC--IGHLTDDD--FVSFFK-RAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~--l~~~~~~d--l~~~l~-~l~~~LkpGG~lii 290 (307)
++++..|....+....++||+|++-.. ........ -.++++ .+.+.|+|||++++
T Consensus 159 v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 159 LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 334444333233223568999997521 00000000 257888 89999999999876
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=80.61 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.+.+|+|+|||||.+++..+..+..+|+++|+++++++.++++..+. ...+.|++.|+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~ 103 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVS 103 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchh
Confidence 55689999999999999766666679999999999999999998652 234566666665
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-07 Score=85.77 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=67.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++++...+.. ++.+...|+.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~------~v~~~~~D~~-------------- 231 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT------NVQFQALDST-------------- 231 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEEcCHH--------------
Confidence 4578999999999999976554 468999999999999999888654321 2455555544
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++.-.-.-+. ..+++. ...++|+++++++-+
T Consensus 232 ---------~~~~~~~~~~D~Vv~dPPr~G~~----~~~~~~-l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 232 ---------QFATAQGEVPDLVLVNPPRRGIG----KELCDY-LSQMAPRFILYSSCN 275 (315)
T ss_pred ---------HHHHhcCCCCeEEEECCCCCCcc----HHHHHH-HHHcCCCeEEEEECC
Confidence 2211 235799999874411111 223333 334688888887644
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=85.69 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+..+|||||||+|.+...+..+... +++++|+++.+++.|++++...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5689999999999887755444433 7999999999999999998755
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-08 Score=93.76 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=77.4
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~--v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
...+-..|..+++.... ...-..+||+|||+|.++.+|+.+..-. +..-|..+.+++.|.++-- ..
T Consensus 98 a~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv---------pa 165 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV---------PA 165 (506)
T ss_pred HHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc---------ch
Confidence 33444556666653221 1233568999999999999988776541 2222455556666654420 00
Q ss_pred ccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ....+ .++++++.||+|.|+.++......+ .-+|-++.++|+|||+|+++.
T Consensus 166 ~~~--~~~s~-----------------------rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 166 MIG--VLGSQ-----------------------RLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhh--hhccc-----------------------cccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecC
Confidence 000 11112 6777899999999999877665433 457889999999999999875
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 220 p 220 (506)
T PF03141_consen 220 P 220 (506)
T ss_pred C
Confidence 4
|
; GO: 0008168 methyltransferase activity |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.51 E-value=8e-07 Score=81.62 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|||+|..+...... ...+++++|.|+.|++.++..+....... ..........
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-----~~~~~~~~~~------------ 95 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-----NAEWRRVLYR------------ 95 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-----cchhhhhhhc------------
Confidence 5679999999999766643222 23379999999999999988765321100 0000000000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
+.. +....|+|+++++|..+.+.....+++++.+.+.+ .|+++|.-.+.||
T Consensus 96 -----------~~~-~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 96 -----------DFL-PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred -----------ccc-cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 111 11234999999999999887788899999888776 9999998766664
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=78.93 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=71.9
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
..+||||||.|.....++...+. .++|+|+....+..+.+++...++. ++.+++.+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~------Nv~~~~~da~--------------- 77 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK------NVRFLRGDAR--------------- 77 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS------SEEEEES-CT---------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc------ceEEEEccHH---------------
Confidence 38999999999999988777776 8999999999999998877654433 2444444433
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.....+ ++++++|-|+.++.=-+.... --..++..+++.|+|||.|.+..
T Consensus 78 ----~~l~~~-~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 78 ----ELLRRL-FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----THHHHH-STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----HHHhhc-ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 000011 236899999986541111100 11689999999999999998864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=88.07 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+ +....+|+++|+++.|++.|++++...+.. ++.++..+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~l-a~~~~~V~~vE~~~~av~~a~~n~~~~~~~------nv~~~~~d~~~------------- 351 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPL-AKQAKSVVGIEVVPESVEKAQQNAELNGIA------NVEFLAGTLET------------- 351 (431)
T ss_pred CCCEEEEcCCCcCHHHHHH-HHhCCEEEEEEcCHHHHHHHHHHHHHhCCC------ceEEEeCCHHH-------------
Confidence 5579999999999999975 455568999999999999999987644321 24455554430
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
....+....++||+|++.-.-..+ ...+++.+.+ ++|+++++++
T Consensus 352 ------~l~~~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 352 ------VLPKQPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------HHHHHHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 000111124579999975431111 2455555554 7899988875
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-07 Score=84.92 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++++...+.. .+.++..++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~------~~~~~~~d~~-------------- 291 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD------NLSFAALDSA-------------- 291 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC------cEEEEECCHH--------------
Confidence 3468999999999999976644 457999999999999999887654321 3455555544
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++.-.-..+. ..+++.+. .++|++++++.-+
T Consensus 292 ---------~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 292 ---------KFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---------HHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 2211 124599999865422222 44455554 3799999888644
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.1e-07 Score=79.29 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA 195 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~ 195 (307)
++.+|||+|||||.++..++..+..+|+++|+++.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567899999999999998777767789999999988876
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-07 Score=85.35 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=83.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc-cccc--cCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE-KNKK--VGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~--~~~ 233 (307)
++.++||||||+-..-.--+.+.+.+|+..|.++.-++..++.+...+. .+-.....++ ..+++... +.++ +.+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a--~DWs~~~~~v-~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGA--FDWSPFWKYV-CELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS----THHHHHHH-HHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCC--CCccHHHHHH-HhccCCcchhhhHHHHHH
Confidence 5679999999996543322335667999999999999999888765411 1112222222 23332221 1111 124
Q ss_pred ccee-eeccCCcCCCCCCC-----CceeeEEcchhhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVK-IAKKGISADFTPET-----GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~-~~~~d~~~~~~~~~-----~~fDlIi~~~~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
..|+ ++..|+....+..+ .+||+|++.+++..+.. +.....++++.++|||||.|++..-..
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 4454 66678776554332 35999999999887643 457889999999999999999976543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-07 Score=87.20 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred CceEEEEeccccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~-----~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
...|+|+|||+|.++...+... ..+|++||-++.++...+++....++ ..++.++..+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r---------- 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMR---------- 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TT----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCccc----------
Confidence 5689999999999987555443 24899999999888777665433333 234666666666
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
++.. +.+.|+|++=+.=.....+-..+.+....+.|||||+++
T Consensus 252 -------------~v~l-pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 252 -------------EVEL-PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------TSCH-SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -------------CCCC-CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5544 459999997543222222345678888999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.6e-07 Score=77.33 Aligned_cols=48 Identities=25% Similarity=0.101 Sum_probs=42.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+.++||++||+|.++..+++++..+|+++|.++.+++.+++++...+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~ 96 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK 96 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 457899999999999999888888789999999999999998876543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=79.35 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..|+.+|||.|.|+|.+|..++.... .+|+..|..+...+.|++++...++. ..+.+...|+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-----~~v~~~~~Dv~---------- 102 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-----DNVTVHHRDVC---------- 102 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-----TTEEEEES-GG----------
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-----CCceeEeccee----------
Confidence 45889999999999999997665443 38999999999999999998765542 23444444442
Q ss_pred ccceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcC-CCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~L-kpGG~lii~e~ 293 (307)
...+.. ..+.+|.|+. .++ +.-..+..+.+.| +|||.|++.-.
T Consensus 103 -----------~~g~~~~~~~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 103 -----------EEGFDEELESDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp -----------CG--STT-TTSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred -----------cccccccccCcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECC
Confidence 002211 1468999987 344 3367789999999 89999988644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=81.04 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+|+|.|.++.. +++.+.+|++++.|..|..+.+++-- + .....
T Consensus 112 ~~~~lLDlGAGdGeit~~-m~p~feevyATElS~tMr~rL~kk~y-------------n--Vl~~~-------------- 161 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRLKKKNY-------------N--VLTEI-------------- 161 (288)
T ss_pred CCeeEEeccCCCcchhhh-hcchHHHHHHHHhhHHHHHHHhhcCC-------------c--eeeeh--------------
Confidence 458999999999999995 67888899999999999999876531 1 11111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC-CcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp-GG~lii~ 291 (307)
++...+-+||+|.|-+.+.... +.-.+++.++.+|+| +|.+|++
T Consensus 162 ---------ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 162 ---------EWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ---------hhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 3333355799999999998877 448899999999999 8887774
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-06 Score=73.15 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
-.|+..++... .+.++||+|.=||+.+..++..... +|+++|+++...+.+....+..+. ...+++
T Consensus 62 g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 45666666532 4578999999999988866555544 899999999999999776654432 344555
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
...+..+ .+.- +.++. +.+.||++|.-. .++.....+.++.+++|+||+|++ ||++.
T Consensus 130 i~g~a~e-----------sLd~----l~~~~--~~~tfDfaFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~-DNvl~ 186 (237)
T KOG1663|consen 130 IEGPALE-----------SLDE----LLADG--ESGTFDFAFVDA-----DKDNYSNYYERLLRLLRVGGVIVV-DNVLW 186 (237)
T ss_pred eecchhh-----------hHHH----HHhcC--CCCceeEEEEcc-----chHHHHHHHHHHHhhcccccEEEE-ecccc
Confidence 5444330 0000 00011 468999999732 233456788999999999998776 89999
Q ss_pred CCcccCCCC
Q 021836 297 SGTFLLSHS 305 (307)
Q Consensus 297 ~~~~~d~~~ 305 (307)
.|++.++..
T Consensus 187 ~G~v~~p~~ 195 (237)
T KOG1663|consen 187 PGVVADPDV 195 (237)
T ss_pred CCcccCccc
Confidence 888777753
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=78.76 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=73.7
Q ss_pred ceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+||-||.|.|..+..+++.. ..+++.||+++..++.+++.+........ .. +++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dp----------------------Rv~ 133 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DP----------------------RVE 133 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CC----------------------ceE
Confidence 599999999999999887765 45899999999999999999865321110 12 233
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhh--hCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~--~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.-.|..+.......+||+|++--.=. ....-.-..+++.|++.|+++|+++.-
T Consensus 134 i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 134 IIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 333332222222234899999743211 100001278999999999999999885
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=77.39 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
..+||||||.|.....++...+. .++|||+....+..|.+++.+.++. ++.+++.|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~------Nlri~~~DA~--------------- 108 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK------NLRLLCGDAV--------------- 108 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC------cEEEEcCCHH---------------
Confidence 47999999999999988887776 8999999999999998888765442 3555555554
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhC------ChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~------~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. +..+++++.|-|+.++.=-+. ..--...+++.+.+.|+|||.|.+.
T Consensus 109 ----~~l-~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 109 ----EVL-DYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred ----HHH-HhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 011 222346699999986541111 0001268999999999999999985
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-06 Score=76.14 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+.+||||.||.|+.-...+.... .+|...|.|+..++..++.+++.++.+ ..+|.+.|.-+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~-----i~~f~~~dAfd~-------- 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED-----IARFEQGDAFDR-------- 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----ceEEEecCCCCH--------
Confidence 3678999999999999887777655 379999999999999999988766543 234444443200
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.......++++.+..+..+++.+ +...++.+.+++.|||++|.+-
T Consensus 201 ------------~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 201 ------------DSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred ------------hHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 01211234579999999999999866 5668999999999999999975
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=82.46 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=86.5
Q ss_pred cchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccc
Q 021836 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (307)
Q Consensus 133 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~ 212 (307)
++....+..+.... .+.+||++=|=||.++.+.+..+..+||.||.|...++.|++++.-+++. ..
T Consensus 203 lDqR~~R~~l~~~~----------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~ 268 (393)
T COG1092 203 LDQRDNRRALGELA----------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GD 268 (393)
T ss_pred HHhHHHHHHHhhhc----------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----cc
Confidence 44455555555444 36799999999999999866667779999999999999999998765442 22
Q ss_pred ccceeecCcccccccccccCccceeeeccCCcCCCC---CCCCceeeEEcchh-hhhC------ChhHHHHHHHHHHHcC
Q 021836 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT---PETGRYDVIWVQWC-IGHL------TDDDFVSFFKRAKVGL 282 (307)
Q Consensus 213 ~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fDlIi~~~~-l~~~------~~~dl~~~l~~l~~~L 282 (307)
...+++.|. +..+. ....+||+|++--. +..- -..+...++..+.++|
T Consensus 269 ~~~~i~~Dv----------------------f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 269 RHRFIVGDV----------------------FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred ceeeehhhH----------------------HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence 233444433 32222 12458999996311 1110 0125688899999999
Q ss_pred CCCcEEEEEec
Q 021836 283 KPGGFFVLKEN 293 (307)
Q Consensus 283 kpGG~lii~e~ 293 (307)
+|||.+++..|
T Consensus 327 ~pgG~l~~~s~ 337 (393)
T COG1092 327 APGGTLVTSSC 337 (393)
T ss_pred CCCCEEEEEec
Confidence 99999999876
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.6e-06 Score=76.56 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=38.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.|++.+++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhc
Confidence 5679999999999999987665 5579999999999999998764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=78.36 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=38.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
++.+|||+|||+|.++..++.... +|+++|+++.|++.+++++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhh
Confidence 567999999999999998766654 7999999999999998876
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.9e-06 Score=77.27 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred cccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 131 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
-.++.+..+.++.... .+.+|||+=|=||.++...+..+..+|+.||.|..+++.+++++.-+++.
T Consensus 107 lFlDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---- 172 (286)
T PF10672_consen 107 LFLDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---- 172 (286)
T ss_dssp S-GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----
T ss_pred EcHHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----
Confidence 3456667777777653 45799999999999999766666678999999999999999998654432
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCC--CCCCceeeEEcchh-hh--hC-ChhHHHHHHHHHHHcCCC
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWC-IG--HL-TDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fDlIi~~~~-l~--~~-~~~dl~~~l~~l~~~Lkp 284 (307)
...+.++..|+ ...+. ...++||+|++--. +. .+ -..+...++..+.++|+|
T Consensus 173 ~~~~~~~~~Dv----------------------f~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~ 230 (286)
T PF10672_consen 173 LDRHRFIQGDV----------------------FKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP 230 (286)
T ss_dssp CTCEEEEES-H----------------------HHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred ccceEEEecCH----------------------HHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 12233443333 22111 01468999996311 00 00 013677889999999999
Q ss_pred CcEEEEEec
Q 021836 285 GGFFVLKEN 293 (307)
Q Consensus 285 GG~lii~e~ 293 (307)
||.|++..+
T Consensus 231 gG~l~~~sc 239 (286)
T PF10672_consen 231 GGLLLTCSC 239 (286)
T ss_dssp EEEEEEEE-
T ss_pred CCEEEEEcC
Confidence 999988765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-06 Score=77.26 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+||=||.|.|...+++++.- .+|+.||+++.+++.+++.+....- .+. .+++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~--------------~~~----------DpRv 126 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHE--------------VKN----------NKNF 126 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHH--------------hhc----------CCCE
Confidence 56899999999999999987654 5899999999999999998754210 111 1222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++.. ... +. ..++||+|++-.. .-..+++.+++.|+|||+++.-
T Consensus 127 ~l~~-~~~-~~--~~~~fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 127 THAK-QLL-DL--DIKKYDLIICLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEee-hhh-hc--cCCcCCEEEEcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 2221 000 11 1368999997532 1167889999999999999874
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=78.31 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=69.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+||=||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ... ++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d----------------------~r 131 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDD----------------------PR 131 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGS----------------------TT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCC----------------------Cc
Confidence 56899999999999999866543 358999999999999999876421100 001 22
Q ss_pred eeeeccCCcCCCCCCCC-ceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETG-RYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~-~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~e 292 (307)
++++..|....+....+ +||+|+.-..-....... -.++++.+.+.|+|||++++-.
T Consensus 132 ~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 132 VRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 33333332212211234 899999632211111111 2789999999999999998854
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=74.02 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=38.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|||+|||+|.++..++... ..|+++|+++.+++.+++++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhC
Confidence 56799999999999999766555 569999999999999988763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-06 Score=70.88 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=77.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+++++.+..-..- .....+++|+|+|.|--+..+....+. +++.+|....=+...+......++. ++.
T Consensus 31 ~~~Hi~DSL~~~~~~---~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~------nv~ 101 (184)
T PF02527_consen 31 WERHILDSLALLPFL---PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS------NVE 101 (184)
T ss_dssp HHHHHHHHHGGGGCS----CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S------SEE
T ss_pred HHHHHHHHHHhhhhh---ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC------CEE
Confidence 445677776642221 112227999999999888865555554 7999999998666665554433332 245
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++..++ + .....+||+|++..+- .+..++.-+...+++||.+++.-
T Consensus 102 v~~~R~E-----------------------~-~~~~~~fd~v~aRAv~------~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 102 VINGRAE-----------------------E-PEYRESFDVVTARAVA------PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EEES-HH-----------------------H-TTTTT-EEEEEEESSS------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEeeec-----------------------c-cccCCCccEEEeehhc------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 5555555 3 2236799999998763 56788899999999999988753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=74.32 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+-||+|.++.+.++++..+|+.||.++..+...++++...+.. .....++.|..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-----~~~~v~~~d~~-------------- 102 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-----DKIRVIKGDAF-------------- 102 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-----GGEEEEESSHH--------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-----cceeeeccCHH--------------
Confidence 57899999999999999999999999999999999999999998654332 12233333321
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHH--HcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAK--VGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~--~~LkpGG~lii~e~ 293 (307)
.+. ........+||+|++--.... . . ...++..+. .+|+++|++++ |+
T Consensus 103 ~~l-----~~~~~~~~~fDiIflDPPY~~-~--~~~~~~l~~l~~~~~l~~~~~ii~-E~ 153 (183)
T PF03602_consen 103 KFL-----LKLAKKGEKFDIIFLDPPYAK-G--LYYEELLELLAENNLLNEDGLIII-EH 153 (183)
T ss_dssp HHH-----HHHHHCTS-EEEEEE--STTS-C--HHHHHHHHHHHHTTSEEEEEEEEE-EE
T ss_pred HHH-----HhhcccCCCceEEEECCCccc-c--hHHHHHHHHHHHCCCCCCCEEEEE-Ee
Confidence 000 011012578999998654321 1 2 366777776 78999998777 55
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-06 Score=75.63 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+..|||+|||+|.++......+..+|++|+.| +|.+.|++..+.+.+ ..++.++...++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiE-------------- 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIE-------------- 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccc--------------
Confidence 557899999999999986556677799999975 699999998876543 334445455444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhh-CChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGH-LTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+... +++.|+|++--. .+ +-++...+..-.+++.|||.|.++=
T Consensus 237 ---------dieL-PEk~DviISEPM-G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 237 ---------DIEL-PEKVDVIISEPM-GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ---------cccC-chhccEEEeccc-hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 4433 578999997422 12 1222334444556799999998764
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-06 Score=76.68 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++.+|||||||+|.+|..++.. ..+|+++|+++.|++.+++++..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh
Confidence 36679999999999999977665 45799999999999999988753
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=74.45 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|||+|.=+..+|.... ..++.+|+|..+++.+.+++....+. .-.+.-++.++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p----~l~v~~l~gdy~--------- 142 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS----HVRCAGLLGTYD--------- 142 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC----CeEEEEEEecHH---------
Confidence 556899999999998887766542 26999999999999999888622111 111111233332
Q ss_pred CccceeeeccCCcCCCCC--CCCceeeEEc-chhhhhCChhHHHHHHHHHHH-cCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTP--ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~--~~~~fDlIi~-~~~l~~~~~~dl~~~l~~l~~-~LkpGG~lii~ 291 (307)
.. ...++. ..+...+|+. ..++.++++++...+|+++++ .|+|||.|++.
T Consensus 143 --------~~--l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 --------DG--LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred --------HH--HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 00 000110 1223455554 568999999999999999999 99999998884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=76.09 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=44.6
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.+|||++||+|.++.. +++...+|+++|+++.+++.|++++...+.. ++.++..++.
T Consensus 199 ~~vlDl~~G~G~~sl~-la~~~~~v~~vE~~~~av~~a~~n~~~~~~~------~v~~~~~d~~ 255 (353)
T TIGR02143 199 GDLLELYCGNGNFSLA-LAQNFRRVLATEIAKPSVNAAQYNIAANNID------NVQIIRMSAE 255 (353)
T ss_pred CcEEEEeccccHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHHHcCCC------cEEEEEcCHH
Confidence 4799999999999994 6666678999999999999999988654332 2455555554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-05 Score=60.01 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=64.2
Q ss_pred EEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
++|+|||+|..+ .+..... ..++++|+++.++..++..... ... ..+.+...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~---------------- 108 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADAL---------------- 108 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccc----------------
Confidence 999999999976 2222222 2689999999999985544321 100 00122222222
Q ss_pred eccCCcC-CCCCCC-CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 239 AKKGISA-DFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 239 ~~~d~~~-~~~~~~-~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
. ..+... ..||++ +.....+... ....+..+.+.|+|+|.+++.....
T Consensus 109 ------~~~~~~~~~~~~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 109 ------GGVLPFEDSASFDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ------cCCCCCCCCCceeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1 133333 479999 5544434332 5788999999999999999987653
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=71.38 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC-------------CCc-ccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAP-DMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~-------------~~~-~~~~~~~~~~~d~~ 222 (307)
.+.+||--|||.|+++..++..++. +.|.|.|-.|+-..+-.+....- .|. ......+ ...+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr--~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLR--PVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCC--ceEeC
Confidence 5689999999999999998888774 99999999998766543321000 000 0000000 01111
Q ss_pred cccccccccCccceeeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 223 GQREKNKKVGSKKVKIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+..+.....+++...+|..+-...+ .++||+|+..+.+.-.. ++.+.++.+.++|||||+.|=.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEec
Confidence 1112222233556777777766555443 47999999887665444 7899999999999999977644
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=75.98 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=44.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.++||++||+|.++.. +++...+|+++|.++.+++.+++++...+.. ++.++..++.
T Consensus 208 ~~vLDl~~G~G~~sl~-la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~------~v~~~~~d~~ 264 (362)
T PRK05031 208 GDLLELYCGNGNFTLA-LARNFRRVLATEISKPSVAAAQYNIAANGID------NVQIIRMSAE 264 (362)
T ss_pred CeEEEEeccccHHHHH-HHhhCCEEEEEECCHHHHHHHHHHHHHhCCC------cEEEEECCHH
Confidence 4799999999999995 5666778999999999999999987654332 3455555554
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=67.37 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=65.3
Q ss_pred CceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+.-++|||||+|..+..+.+.... .+.++|+++.+++..++.+..++. .+..++.|+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------~~~~V~tdl~------------- 103 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------HIDVVRTDLL------------- 103 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------ccceeehhHH-------------
Confidence 467999999999999866555443 579999999999987766543211 1233333333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcc-------------------hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQ-------------------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~-------------------~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+. .++.|+++.+ |.=..-..+-...++..+-..|.|.|.|++.-
T Consensus 104 ---------~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 104 ---------SGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred ---------hhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 2222 2455555533 11111122235677888889999999999853
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=70.00 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+.||+|+|+|+++..+ .+.. ...+|||.-++.++.+++++...-... . ....=.
T Consensus 82 pG~s~LdvGsGSGYLt~~~-~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~----e--------------~~~~~~ 142 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACF-ARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS----E--------------SSSKLK 142 (237)
T ss_pred cCcceeecCCCccHHHHHH-HHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc----h--------------hhhhhc
Confidence 7899999999999999854 4322 235999999999999999885321000 0 000011
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.++.+...|-...+. +..+||.|.+... ..+..+++...|+|||.+++-
T Consensus 143 ~~~l~ivvGDgr~g~~-e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYA-EQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCceEEEeCCccccCC-ccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 3345566666654554 4679999998743 244557788889999998873
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=77.22 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=69.9
Q ss_pred CceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|||++||+|..+..++... ..+|+++|+++.+++.+++++..++..+ ..+++.|..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~------~~v~~~Da~-------------- 117 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN------EKVFNKDAN-------------- 117 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc------eEEEhhhHH--------------
Confidence 3589999999999999765543 3479999999999999999886544321 223444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+....++||+|++.- . . ....++..+.+.+++||+++++
T Consensus 118 ---------~~l~~~~~fD~V~lDP-~---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 118 ---------ALLHEERKFDVVDIDP-F---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------HHHhhcCCCCEEEECC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 2111135699999853 2 2 2256778877788999999998
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.6e-05 Score=61.03 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred CCceEEEEeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~-~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|. ++..+ .....+|+++|+++..++.++++. ..+...|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf------------- 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL-KESGFDVIVIDINEKAVEKAKKLG-------------LNAFVDDLF------------- 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhC-------------CeEEECcCC-------------
Confidence 45789999999996 77754 454457999999999999987763 233344432
Q ss_pred eeeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.-.+. -..+|+|.+... .++++..+-++++.+. .-++|.
T Consensus 69 ----------~p~~~~y~~a~liysirp-----p~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 69 ----------NPNLEIYKNAKLIYSIRP-----PRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred ----------CCCHHHHhcCCEEEEeCC-----CHHHHHHHHHHHHHcC--CCEEEE
Confidence 11111 357999998765 3467777777777554 345554
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=73.79 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec-CcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 233 (307)
.+++..|||-=||||.+... +.....+++|+|++..|++-|+.++..++... ..++.. |+.
T Consensus 195 v~~G~~vlDPFcGTGgiLiE-agl~G~~viG~Did~~mv~gak~Nl~~y~i~~------~~~~~~~Da~----------- 256 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIE-AGLMGARVIGSDIDERMVRGAKINLEYYGIED------YPVLKVLDAT----------- 256 (347)
T ss_pred cccCCEeecCcCCccHHHHh-hhhcCceEeecchHHHHHhhhhhhhhhhCcCc------eeEEEecccc-----------
Confidence 45778999999999999886 33344479999999999999999987665322 111122 443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhC-----C--hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHL-----T--DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-----~--~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++..+++|.|++--....- . +.-..++++.++++||+||++++.-.
T Consensus 257 ------------~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 ------------NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ------------cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 444455679999974322111 1 12358899999999999999999765
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=76.46 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||++||+|.=|..+++... ..|+++|+++.-++.+++++.+.++.| +.+...|..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n------v~v~~~D~~---------- 174 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN------VALTHFDGR---------- 174 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe------EEEEeCchh----------
Confidence 34778999999999999987766543 379999999999999999987765533 222233322
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEE----cch--hhhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIW----VQW--CIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi----~~~--~l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. ...+.||.|+ |+. ++.. ++..+ ..++|..+.++|||||+|+.+
T Consensus 175 -------------~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 175 -------------VFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred -------------hhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 111 1145799999 442 1221 11111 267899999999999999875
Q ss_pred e
Q 021836 292 E 292 (307)
Q Consensus 292 e 292 (307)
.
T Consensus 242 T 242 (470)
T PRK11933 242 T 242 (470)
T ss_pred C
Confidence 4
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=78.14 Aligned_cols=127 Identities=17% Similarity=0.046 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCCcc---CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 139 EAFLQMLLSDRFPNAR---NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~---~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
..+++.+.+....... ......+||||||.|.++..++...+. .++|+|+....+..+.++....++.| +
T Consensus 326 ~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N------~ 399 (506)
T PRK01544 326 QNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN------F 399 (506)
T ss_pred HHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe------E
Confidence 3444555553332211 224568999999999999987777765 79999999998888877765444332 2
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CCh-hHHHHHHHHHHHcCCCCcEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LTD-DDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~~-~dl~~~l~~l~~~LkpGG~l 288 (307)
.+++.++. + +. .. .+++++|.|++++.=-+ ... ---..+++.+++.|+|||.|
T Consensus 400 ~~~~~~~~---------------~----~~-~~-~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 400 LLFPNNLD---------------L----IL-ND-LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEcCCHH---------------H----HH-Hh-cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 33333332 0 00 11 24678999998654111 110 01268899999999999999
Q ss_pred EEEe
Q 021836 289 VLKE 292 (307)
Q Consensus 289 ii~e 292 (307)
.+..
T Consensus 459 ~~~T 462 (506)
T PRK01544 459 VFAS 462 (506)
T ss_pred EEEc
Confidence 8853
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=66.67 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=69.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-c---------EEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQR 225 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~---------v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (307)
+++..+||--||+|.+.++.+..... . +.|+|+++.+++.|++++...+.. ..+.+...|..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-----~~i~~~~~D~~--- 98 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-----DYIDFIQWDAR--- 98 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-----GGEEEEE--GG---
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-----CceEEEecchh---
Confidence 36679999999999998764333222 2 789999999999999998655432 23344444444
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-CCh-hH----HHHHHHHHHHcCCCCcEEEEEec
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-LTD-DD----FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-~~~-~d----l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++..++++|+|+++-.... +.. .+ ...+++.+.++|++...+++.++
T Consensus 99 --------------------~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 99 --------------------ELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp --------------------GGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred --------------------hcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 44434678999999855432 121 11 35678899999999666666544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7e-06 Score=67.41 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+++|+|||.|-++....-.....|.|+|+++..++.++.++.+..+ .+++.++++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------qidlLqcdil-------------- 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------QIDLLQCDIL-------------- 106 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------hhheeeeecc--------------
Confidence 5689999999999998643223344899999999999999988765321 2234444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
+..+..+.||.++.+..+
T Consensus 107 ---------dle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 107 ---------DLELKGGIFDTAVINPPF 124 (185)
T ss_pred ---------chhccCCeEeeEEecCCC
Confidence 444446889999877544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.5e-06 Score=77.45 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=83.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+...++|+|||.|.....+..-....++|++.++..+..+........+. ....+...++.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~-------------- 170 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFG-------------- 170 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhh--------------
Confidence 55689999999999999654434457999999999888877655433221 12222233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
..+++++.||.+.+..+..|.+ +...++++++++++|||+++..+.+....
T Consensus 171 ---------~~~fedn~fd~v~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 171 ---------KMPFEDNTFDGVRFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ---------cCCCCccccCcEEEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 4556789999999999999999 67999999999999999999987654433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=69.02 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++..|+|+-||.|.++..++.. ....|+++|++|..++.+++++..+++. ..+..+..|..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~------------- 162 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAR------------- 162 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GG-------------
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHH-------------
Confidence 6789999999999999976552 3447999999999999999988655432 22333444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.+.. .+.||-|+++.. + .-..++..+.+.+++||++.
T Consensus 163 ----------~~~~-~~~~drvim~lp--~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 163 ----------EFLP-EGKFDRVIMNLP--E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------G----TT-EEEEEE--T--S----SGGGGHHHHHHHEEEEEEEE
T ss_pred ----------HhcC-ccccCEEEECCh--H----HHHHHHHHHHHHhcCCcEEE
Confidence 4433 678999998654 1 12457888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=66.25 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSH 191 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~ 191 (307)
++.++||+||++|.++..++.+. ..+|+++|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999766665 348999999775
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=63.33 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=75.0
Q ss_pred hcHHHHHHHHHhccCCCccCCC-CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQ-HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~-~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
-..+++++.+...... .. +.+++|||+|.|--+..++....+ +|+.+|....=+...+....+.++.|
T Consensus 49 ~~~rHilDSl~~~~~~----~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n------ 118 (215)
T COG0357 49 LWQRHILDSLVLLPYL----DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN------ 118 (215)
T ss_pred HHHHHHHHHhhhhhcc----cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC------
Confidence 3556666665542111 12 579999999999888754323333 69999998876665555554444432
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCCCCc-eeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGR-YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+.+++..++ ++... .. ||+|++..+- .+..++.-+...+|+||.+++
T Consensus 119 v~i~~~RaE-----------------------~~~~~-~~~~D~vtsRAva------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 119 VEIVHGRAE-----------------------EFGQE-KKQYDVVTSRAVA------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eEEehhhHh-----------------------hcccc-cccCcEEEeehcc------chHHHHHHHHHhcccCCcchh
Confidence 556666665 44321 23 9999998663 567778888999999888653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=62.96 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+=+|+|.++.+.++++...++.||.+...+...+++....+.. ....++..+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~~~~~da~-------------- 103 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-----GEARVLRNDAL-------------- 103 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-----cceEEEeecHH--------------
Confidence 57899999999999999999999999999999999999999988654421 12222222221
Q ss_pred eeeccCCcCCC--CCCCCceeeEEcchhhhhCChhHHHHHHHH--HHHcCCCCcEEEE
Q 021836 237 KIAKKGISADF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~--~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~--l~~~LkpGG~lii 290 (307)
..+ ....++||+|+.--.++. .--+....+.. -...|+|+|.+++
T Consensus 104 --------~~L~~~~~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 104 --------RALKQLGTREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred --------HHHHhcCCCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 011 111235999998655431 10011222333 4577999999888
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.4e-05 Score=71.54 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=72.5
Q ss_pred CceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+.+|||+.||+|..++.++.+ +..+|+++|+++..++.+++++..++.. .+.+++.|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~------~~~v~~~Da~------------- 105 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE------NIEVPNEDAA------------- 105 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEchhHH-------------
Confidence 368999999999999988876 4568999999999999999988543321 1233333332
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+.....+||+|..-- + . ....++..+.+.+++||+|+++-
T Consensus 106 ---------~~l~~~~~~fDvIdlDP-f-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 106 ---------NVLRYRNRKFHVIDIDP-F-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------HHHHHhCCCCCEEEeCC-C-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 11111135799998743 2 2 22568889999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=69.91 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=79.7
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.++|-+|||.-.++..+...++..|+.+|+|+..++.+..+.... .....+...++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~---------------- 106 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMD---------------- 106 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecch----------------
Confidence 389999999999999988889999999999999999887665321 122334444444
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChh--------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDD--------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+++++||+|+.-..++++-.+ .....+..++++|+|||.++.+..
T Consensus 107 -------~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 107 -------QLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred -------hccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 556678999999988887775321 124567899999999999877655
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.2e-05 Score=67.08 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=73.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+.+|||...|-|+.++..++++..+|..++.++..++.|.-+-=+.++ .. .
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~----------------------~ 185 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FE----------------------I 185 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cc----------------------c
Confidence 446889999999999999998888887899999999999988643211000 00 1
Q ss_pred ceeeeccCCcCCC-CCCCCceeeEEcchh-hhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 235 KVKIAKKGISADF-TPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 235 ~i~~~~~d~~~~~-~~~~~~fDlIi~~~~-l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.|+++.+|..+-. .+.+.+||+|+---. |.+...---.++.++++++|||||.++-
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 1334443322111 225788999984211 2233311237899999999999999875
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00043 Score=60.86 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred CCCCceEEEEeccccHHHHHHH-HhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll-~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..+....+|+|||.|....... ...+.+.+|||+.+...+.|+...... ......+. ...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~-------~~~~~~~g------------~~~ 100 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEEL-------KKRMKHYG------------KRP 100 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHH-------HHHHHHCT------------B--
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHH-------HHHHHHhh------------ccc
Confidence 4467899999999999876432 234557999999999888887543211 00000000 012
Q ss_pred cceeeeccCCcCC-CCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 234 KKVKIAKKGISAD-FTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 234 ~~i~~~~~d~~~~-~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
..+++.++|.... +... -...|+|++++.+ ++ +++..-|.+....||+|-.++-...+++..+-
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~~~ 166 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPRRRS 166 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT--
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCCCcc
Confidence 3345555543211 0000 1346999998863 33 35666678888889999888877776666544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.4e-05 Score=68.81 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+..++|+|||.|..+.. .... .+++.|.+...+..+++.-.. .....|+.
T Consensus 45 ~gsv~~d~gCGngky~~~--~p~~-~~ig~D~c~~l~~~ak~~~~~------------~~~~ad~l-------------- 95 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV--NPLC-LIIGCDLCTGLLGGAKRSGGD------------NVCRADAL-------------- 95 (293)
T ss_pred CcceeeecccCCcccCcC--CCcc-eeeecchhhhhccccccCCCc------------eeehhhhh--------------
Confidence 457899999999977651 2222 589999999888887654310 12233333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~ 291 (307)
..+....+||.+++..++||+.... ...+++++.+.|+|||...+.
T Consensus 96 ---------~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 96 ---------KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred ---------cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4555678999999999999986543 578999999999999986553
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=63.59 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=44.1
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++.+.... ...++..|||||+|.|.+|..++.... +|+++|+++.+++..++...
T Consensus 17 ~v~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 17 NVIDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc
Confidence 3355555422 234578999999999999998766555 59999999999999998874
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=66.30 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=81.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|+|.=||.|.+++.++..+...|+++|++|..++.+++++.-+++.+ .+..+.+|..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~-----~v~~i~gD~r-------------- 248 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEG-----RVEPILGDAR-------------- 248 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccc-----eeeEEeccHH--------------
Confidence 578999999999999997665555569999999999999999987665532 2344455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
...+..+.+|-|+++..- .-..++..+.+.+++||++.+-+++-.+.
T Consensus 249 ---------ev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 249 ---------EVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ---------HhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 343333789999987652 33677888889999999999988765443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00032 Score=70.19 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---------~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
...+|||.|||+|.+...++.... .+++|+|+++..+..++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 356899999999999887765432 2689999999999999988753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00037 Score=63.06 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=42.6
Q ss_pred cCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 154 ~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+.+++..|||+|.|||.+|..++.... +|+++|+++.|+....++....
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCC
Confidence 456889999999999999998877665 5999999999999999987643
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=61.83 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=41.8
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.|+|+.||.|..++.+ ++.+.+|+++|+++..++.|+.++.-++. ..++.+++.|..
T Consensus 2 ~vlD~fcG~GGNtIqF-A~~~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~ 58 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF-ARTFDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFF 58 (163)
T ss_dssp EEEETT-TTSHHHHHH-HHTT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HH
T ss_pred EEEEeccCcCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHH
Confidence 5899999999999975 56677899999999999999999876653 334556555553
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00032 Score=62.41 Aligned_cols=96 Identities=25% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++..+||+|+.||.+|..++.++..+|+++|..-..+..--+.- .+.+.+...++.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r-------------- 134 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVR-------------- 134 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChh--------------
Confidence 67899999999999999988888999999999877665432221 111222222221
Q ss_pred eeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+.++ .+..|+|+|--++. .+..+|..+...++|+|.++.
T Consensus 135 ---------~l~~~~~~~~~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 135 ---------YLTPEDFTEKPDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ---------hCCHHHcccCCCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 11111 23678999866543 567889999999999998776
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00066 Score=66.20 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
++.++||+=||.|.++.. ++....+|+|+|+++.+++.|+++++.++..| +.|...+.+
T Consensus 293 ~~~~vlDlYCGvG~f~l~-lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N------~~f~~~~ae 351 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP-LAKRVKKVHGVEISPEAVEAAQENAAANGIDN------VEFIAGDAE 351 (432)
T ss_pred CCCEEEEeccCCChhhhh-hcccCCEEEEEecCHHHHHHHHHHHHHcCCCc------EEEEeCCHH
Confidence 567899999999999996 56777789999999999999999998766543 455555544
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00044 Score=60.74 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=36.9
Q ss_pred CCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcE-----EEEEe
Q 021836 250 ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLKE 292 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~-----lii~e 292 (307)
+.++||+|.++.+|.+++++. .-+.++++++.|+|+|. |+++-
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 367899999999999998654 67899999999999999 77653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=65.62 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.++..++|++||.|..|..++.... .+|+|+|.++.+++.+++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 3667999999999999998887764 489999999999999998874
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00049 Score=59.08 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=70.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
..+.|+|+|+|.++. +++....+|++++.+|.-...|.+++.-.+. .+..++..|..
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~---------------- 90 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDAR---------------- 90 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccc----------------
Confidence 678999999999998 6777788999999999999999988743322 22334444443
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+..+ ...|+|+|-..=.-+-++....++..+...||-+|.++=.
T Consensus 91 -------~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 91 -------DYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred -------cccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 4433 4679999864311122234567788888889988887653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=64.02 Aligned_cols=111 Identities=18% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~--------~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
+.++.+|+|-+||+|.+...+... ...+++|+|+++.++..|+-++.-.+.. .....+..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~-------- 111 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQ-------- 111 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEE--------
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccc--------
Confidence 346678999999999998876553 2237999999999999888664211100 01011212
Q ss_pred cccccCccceeeeccCCcCCCCC-CCCceeeEEcchhhhhC--Ch-----------------hHHHHHHHHHHHcCCCCc
Q 021836 227 KNKKVGSKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 227 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~--~~-----------------~dl~~~l~~l~~~LkpGG 286 (307)
.|....... ....||+|+++-.+... .. ..--.++..+.+.|++||
T Consensus 112 --------------~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 112 --------------GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGG 177 (311)
T ss_dssp --------------S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEE
T ss_pred --------------cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccc
Confidence 221111111 14689999987443222 00 011358899999999999
Q ss_pred EEEEE
Q 021836 287 FFVLK 291 (307)
Q Consensus 287 ~lii~ 291 (307)
.++++
T Consensus 178 ~~~~I 182 (311)
T PF02384_consen 178 RAAII 182 (311)
T ss_dssp EEEEE
T ss_pred ceeEE
Confidence 86553
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00074 Score=69.95 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-------------------------------------------~~~v~~vD~s~~~l 193 (307)
++..++|.+||+|.+.++.+... ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999887653310 01589999999999
Q ss_pred HHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhh-C-Chh
Q 021836 194 DAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGH-L-TDD 269 (307)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~-~-~~~ 269 (307)
+.|+.++...++. ..+.+...|+. .+.. ..++||+|+++-.... + ...
T Consensus 270 ~~A~~N~~~~g~~-----~~i~~~~~D~~-----------------------~~~~~~~~~~~d~IvtNPPYg~r~~~~~ 321 (702)
T PRK11783 270 QAARKNARRAGVA-----ELITFEVKDVA-----------------------DLKNPLPKGPTGLVISNPPYGERLGEEP 321 (702)
T ss_pred HHHHHHHHHcCCC-----cceEEEeCChh-----------------------hcccccccCCCCEEEECCCCcCccCchH
Confidence 9999998765442 12334444443 2322 2357999999855322 2 223
Q ss_pred HHHHHHHHHHHcCC---CCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLK---PGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~Lk---pGG~lii~e 292 (307)
++..+...+.+.|+ +|+.+++..
T Consensus 322 ~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 322 ALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 45556555555554 888776654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=57.25 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||++|-|-|.+.-.+-..-+.+=+.++..+..++..+...-.. ..++..+..-.+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~We-------------- 159 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWE-------------- 159 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchH--------------
Confidence 67899999999998888544444446788999999999988764221 111222222222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|....+ +++.||-|+.----.+-. ++..+.+.+.++|||+|+|-+....+.+.
T Consensus 160 -----Dvl~~L--~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP~gv~SyfNg~~~~~ 212 (271)
T KOG1709|consen 160 -----DVLNTL--PDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKPEGVFSYFNGLGADN 212 (271)
T ss_pred -----hhhccc--cccCcceeEeechhhHHH--HHHHHHHHHhhhcCCCceEEEecCcccch
Confidence 111123 467899998643223333 78899999999999999998876555554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=53.62 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~-----~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.....++..+..... ...+..+|+|+|||-|.++..+.. ...-+|+++|.++..++.+.++...
T Consensus 7 ~~~~~~i~~~~~~~~---~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG---ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred HHHHHHHHHHHHHhh---ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 344455555554211 124678999999999999996554 2223899999999999999887654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=59.00 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=39.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++..|||+|+|+|.+|..++... .+++++|+++.+.+..++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh
Confidence 67899999999999999877666 789999999999999998874
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=59.91 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CC-cEEEEeCCHHHHHHHHHHhC-CCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~-~v~~vD~s~~~l~~A~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+.+|+=||||+=-+|.-++... .. .|+++|+++..++.+++... ..++ ...+.|.+.+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~---------- 184 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVL---------- 184 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchh----------
Confidence 34699999999887777556542 22 68999999999999987764 1111 233445444443
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+...+-..||+|+..... .++.++-.+++.++.+.++||..+++-
T Consensus 185 -------------~~~~dl~~~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 185 -------------DVTYDLKEYDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -------------GG-GG----SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred -------------ccccccccCCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 222223589999876543 344456789999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00056 Score=59.09 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|+|+|..++.-+..+...|+..|+.+......+-+.+.+++ .+.+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------~i~~-------------------- 131 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------SILF-------------------- 131 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------eeEE--------------------
Confidence 5789999999999999865556667899999998888777766654432 2222
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
...|+ ..++..||+|+...++..-+ .-..++. +...|+..|.-++
T Consensus 132 --~~~d~----~g~~~~~Dl~LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 132 --THADL----IGSPPAFDLLLAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred --eeccc----cCCCcceeEEEeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 22222 11467899999988753322 3355555 6666666665444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00066 Score=64.60 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM 206 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~ 206 (307)
....++..++.. +. ..+. +|||+-||.|.++.. ++..+.+|+|+|+++.+++.|++++...+..
T Consensus 181 ~~~~l~~~~~~~-l~---~~~~-~vlDlycG~G~fsl~-la~~~~~V~gvE~~~~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 181 QNEKLYEQALEW-LD---LSKG-DVLDLYCGVGTFSLP-LAKKAKKVIGVEIVEEAVEDARENAKLNGID 244 (352)
T ss_dssp HHHHHHHHHHHH-CT---T-TT-EEEEES-TTTCCHHH-HHCCSSEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHH-hh---cCCC-cEEEEeecCCHHHHH-HHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 444555555442 22 2233 799999999999995 6777889999999999999999998766544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0049 Score=58.72 Aligned_cols=113 Identities=22% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
+.++.+|||+.++.|.=|.+++..... .|+++|.++.=+...++++.+.+..| +.....|..
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n------v~~~~~d~~--------- 218 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN------VIVVNKDAR--------- 218 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc------eEEEecccc---------
Confidence 557899999999999888876655443 36999999999999999988776543 222222221
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEc----c--hhhh-------hCChhH-------HHHHHHHHHHcCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWV----Q--WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~----~--~~l~-------~~~~~d-------l~~~l~~l~~~LkpGG~lii~ 291 (307)
......+..++||.|++ + .+++ ..+..+ ..++|..+.+.|||||.|+.+
T Consensus 219 -----------~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 219 -----------RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred -----------cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 00011112235898883 2 2221 111111 367899999999999999986
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
.-
T Consensus 288 TC 289 (355)
T COG0144 288 TC 289 (355)
T ss_pred cc
Confidence 43
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00019 Score=59.64 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=46.5
Q ss_pred CCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 246 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 246 ~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
...+.+++.|+|++..++.|++-++...+++.|++.|||||+|-++ .+|.+++|.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA---vPdl~f~~~ 94 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA---VPDLKFLDW 94 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE---cCCcchhHH
Confidence 4455689999999999999999888899999999999999999886 345666553
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00085 Score=57.94 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHHHHH------HHHHhCCCCCCCcccccccceeecCccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDA------ARESLAPENHMAPDMHKATNFFCVPLQGQR 225 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~l~~------A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (307)
.+++.+|+|+=.|.|.+|. +++.... .|+++=+.+...-. .+....+...
T Consensus 46 lkpg~tVid~~PGgGy~Tr-I~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-------------------- 104 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTR-IFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-------------------- 104 (238)
T ss_pred cCCCCEEEEEecCCccHhh-hhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--------------------
Confidence 4588999999999999999 6777543 56666543321100 0000000000
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-----CChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-----LTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-----~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
.+++.+-..+. .+. ..+..|+++....-|. +......++...+++.|||||.+.+.||....|+-
T Consensus 105 --------aN~e~~~~~~~-A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~ 174 (238)
T COG4798 105 --------ANVEVIGKPLV-ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG 174 (238)
T ss_pred --------hhhhhhCCccc-ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC
Confidence 01111111111 111 2456677775433222 22335688899999999999999999997766543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=58.35 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee--------------ecCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--------------CVPL 221 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~--------------~~d~ 221 (307)
..+.+||--|||.|+++..+...++. +-|-+.|--|+-...-.+.--...| ....-.|+ ...+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~n--q~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQEN--QFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCC--cEEEEeeeeccccccccccccccccC
Confidence 35679999999999999987766775 7777888777654432221000000 00000000 1111
Q ss_pred ccccccccccCccceeeeccCCcCCCCC--CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 222 QGQREKNKKVGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+..+++-..+....+...+|..+-... ..+.||+|+.++.+.... ++.+.+..+.+.|||||+.+-.-
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEecc
Confidence 1111222122233344444554433332 235799999887665444 78899999999999999987543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00099 Score=54.38 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=37.8
Q ss_pred eEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCC
Q 021836 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+||+|||+|..+..++..... +++++|+++.+.+.+++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 4899999999999976665554 79999999999999998876543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=61.44 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...++|-+|.|.|...+++++. .+.+|+.||.+|.|++.++++..-.. .| ...+. ..+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~-~N----------~~sf~----------dpR 347 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA-LN----------QGSFS----------DPR 347 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh-hc----------cCCcc----------CCe
Confidence 4568999999999999986543 24589999999999999984421100 00 01111 234
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcc------hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~------~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|..+-+....+.||+|+.- .++..+- -.++..-+++.|+++|.+++..
T Consensus 348 v~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 348 VTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred eEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEec
Confidence 5555555443333345689999853 2222211 1577888999999999999854
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=60.38 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=69.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|.|+|.-....-.-.+ ..++.++.|+..-+............ ....-..++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~------~td~r~s~vt------------ 174 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE------KTDWRASDVT------------ 174 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc------cCCCCCCccc------------
Confidence 456799999999976653222222 36888888887655544332211110 0011111111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
.-. ..++ ....|++|+..+-+-+... ..+...++.+..++.|||.|+|+|.-.+-||
T Consensus 175 ---~dR----l~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 175 ---EDR----LSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred ---hhc----cCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 000 0222 2457888887766555543 2356689999999999999999998666664
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0046 Score=58.91 Aligned_cols=109 Identities=16% Similarity=0.076 Sum_probs=71.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC------C----------------------------------cEEEEeCCHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF------N----------------------------------EVDLLEPVSHFLDAA 196 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~------~----------------------------------~v~~vD~s~~~l~~A 196 (307)
+...++|-=||+|.+.++.+-... . .++|+|+++.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 446899999999999886433221 0 277999999999999
Q ss_pred HHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh-hCChh-HH---
Q 021836 197 RESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG-HLTDD-DF--- 271 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~-~~~~~-dl--- 271 (307)
+.++...++ ...+.|.+.++. .+..+.+.+|+|+|+-... .+..+ .+
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~-----------------------~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~L 322 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADAT-----------------------DLKEPLEEYGVVISNPPYGERLGSEALVAKL 322 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchh-----------------------hCCCCCCcCCEEEeCCCcchhcCChhhHHHH
Confidence 999876654 334555555554 4543337899999984421 12221 22
Q ss_pred -HHHHHHHHHcCCCCcEEEEEec
Q 021836 272 -VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 272 -~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.+.+++.++--+.++++.+
T Consensus 323 Y~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 323 YREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHhcCCceEEEEcc
Confidence 3455566677777777777644
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=60.27 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~ 190 (307)
.++.++||+||++|.+|..++.++. +|++||.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 4788999999999999998777766 799999543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0051 Score=55.80 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+|+.+|+|-|.|+|.++..++.... .+++..|....-.+.|++.+.+.++ ..++.+..-|+..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~--------- 168 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCG--------- 168 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeeccc---------
Confidence 45889999999999999997655543 3899999999888888888876553 4455555555540
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCc-EEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG-~lii~e~ 293 (307)
..+......+|.|+.- ++ ..-..+-.++.+||.+| .|+....
T Consensus 169 ------------~GF~~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 169 ------------SGFLIKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ------------CCccccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEeccH
Confidence 0222225678888863 22 22444556666777665 5554333
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00078 Score=59.22 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=45.8
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
...|+|.-||.|..+..++..+. .|+++|++|.-+..|+.+++-+|.. .++.|+++|.-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~l 153 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFL 153 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHH
Confidence 35799999999999987665555 5999999999999999998877653 25555555543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0094 Score=52.76 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred cCCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHHH----HHHHHHHhCCCCCCCcccccccceeecCcccccc
Q 021836 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHF----LDAARESLAPENHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 154 ~~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~~----l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
..+++.+||-+|+++|..-.++ +.... .|++|+.|+.. ++.|+++- +.+.+ -.|.. .
T Consensus 70 ~ik~gskVLYLGAasGTTVSHv-SDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-----------NIiPI-l~DAr-~-- 133 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHV-SDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-----------NIIPI-LEDAR-H-- 133 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHH-HHHHTTTSEEEEEESSHHHHHHHHHHHHHST-----------TEEEE-ES-TT-S--
T ss_pred CCCCCCEEEEecccCCCccchh-hhccCCCCcEEEEEecchhHHHHHHHhccCC-----------ceeee-eccCC-C--
Confidence 3568899999999999988865 44333 79999999954 44444432 11111 11111 0
Q ss_pred cccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 227 KNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 227 ~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+ ......-+..|+|++--. + .++.+-++.++...||+||.++++=
T Consensus 134 -P----------------~~Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 -P----------------EKYRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -G----------------GGGTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -h----------------HHhhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 0 011112348999997533 1 2255667888999999999988753
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0059 Score=53.70 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=38.0
Q ss_pred EEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
|+||||--|.+..+++..+.. +++++|+++.-++.|++++...++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 689999999999998887654 799999999999999999865543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0022 Score=53.86 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||+|.|--.++.-+++.... .|..+|-++..++..++....+.... ... +.-+.+....
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~---~ts----c~vlrw~~~~------- 94 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS---LTS----CCVLRWLIWG------- 94 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc---cce----ehhhHHHHhh-------
Confidence 5678999999976666545555443 79999999999988876653321000 000 1111100000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.....+...||.|+|..++-. ++-...+++.+...|+|.|.-++.
T Consensus 95 ----------aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 95 ----------AQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred ----------hHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEe
Confidence 011113468999999988632 335678889999999999986654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0098 Score=55.13 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.4
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
..++||||+|...+-.-+..+.+. +++|+|+++..++.|++++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N 149 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN 149 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc
Confidence 578999999998654424344334 8999999999999999998654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=51.33 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+|+|+||-+|.++..+...... .|+++|+.|-- ....+.++..|+.. +...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~-~~~~~---- 101 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITD-EDTLE---- 101 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccC-ccHHH----
Confidence 36789999999999999954444333 49999985411 01124444554430 00000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcch--------hhhhCChhHH-HHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQW--------CIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~--------~l~~~~~~dl-~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+.+ ....+|+|++-. ...|..-..+ ...+.-+...|+|||.|++...
T Consensus 102 --------~l~~~l--~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 102 --------KLLEAL--GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred --------HHHHHc--CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 011111 233479998532 2223221122 4456677789999999998654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.014 Score=53.87 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=71.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+.++.|.=|..++.... ..|++.|+++.-+...+.++...+..+ +.....|..
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~------v~~~~~D~~---------- 146 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN------VIVINADAR---------- 146 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS------EEEEESHHH----------
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce------EEEEeeccc----------
Confidence 34778999999999998887766654 389999999999999988887655432 222222211
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEc----ch--hhhhCC-------hhH-------HHHHHHHHHHcC----CCCcE
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWV----QW--CIGHLT-------DDD-------FVSFFKRAKVGL----KPGGF 287 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~----~~--~l~~~~-------~~d-------l~~~l~~l~~~L----kpGG~ 287 (307)
...+ .....||.|++ +. ++..-+ ..+ ..++|+.+.+.+ ||||.
T Consensus 147 ------------~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 147 ------------KLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp ------------HHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred ------------cccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 0000 01235888883 21 222211 111 257899999999 99999
Q ss_pred EEEEe
Q 021836 288 FVLKE 292 (307)
Q Consensus 288 lii~e 292 (307)
++.+.
T Consensus 215 lvYsT 219 (283)
T PF01189_consen 215 LVYST 219 (283)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99864
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0046 Score=60.61 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 219 (307)
.+.+..++|+-||||.++.. +++.+.+|+|+++++..++.|+.++..++..| .+|++.
T Consensus 381 l~~~k~llDv~CGTG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~NgisN------a~Fi~g 438 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQINGISN------ATFIVG 438 (534)
T ss_pred CCCCcEEEEEeecCCceehh-hhccccceeeeecChhhcchhhhcchhcCccc------eeeeec
Confidence 34567899999999999995 67888899999999999999999988777655 456555
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=51.68 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=75.1
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEecccc--HHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG--~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
....+.|+......+.... .-...||||||.- ..+.++...... +|+.||.+|-.+..++..+....
T Consensus 49 ar~nR~Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------ 119 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------ 119 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------
T ss_pred HHHHHHHHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------
Confidence 3466788887776544321 2246999999965 234444444332 89999999999999998876431
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEE
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~li 289 (307)
.....++..|+...+..-.+. .....+.+ +.+. .+++..++||+++ ++...+++.+...|.||.+|+
T Consensus 120 ~g~t~~v~aD~r~p~~iL~~p----------~~~~~lD~-~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 120 RGRTAYVQADLRDPEAILAHP----------EVRGLLDF-DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp TSEEEEEE--TT-HHHHHCSH----------HHHCC--T-TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred CccEEEEeCCCCCHHHHhcCH----------HHHhcCCC-CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 112445566654111000000 00001111 2222 4556678999977 678999999999999999999
Q ss_pred EEecc
Q 021836 290 LKENI 294 (307)
Q Consensus 290 i~e~~ 294 (307)
++.-+
T Consensus 188 ish~t 192 (267)
T PF04672_consen 188 ISHAT 192 (267)
T ss_dssp EEEEB
T ss_pred EEecC
Confidence 97543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.00094 Score=51.88 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=36.1
Q ss_pred EEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 162 LDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
||+|+..|..+..+++... .+++++|+.+. .+.+++.+...+ ....+.++..+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-----~~~~~~~~~g~s~--------------- 59 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-----LSDRVEFIQGDSP--------------- 59 (106)
T ss_dssp --------------------------EEEESS-------------GG-----G-BTEEEEES-TH---------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-----CCCeEEEEEcCcH---------------
Confidence 6899999999886655322 26999999885 222222221111 1122333333322
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+....+ ..++||+|+.-.. |-. +.....+..+...|+|||++++-|
T Consensus 60 ----~~l~~~--~~~~~dli~iDg~--H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 60 ----DFLPSL--PDGPIDLIFIDGD--HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHH--HH--EEEEEEES-----H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHc--CCCCEEEEEECCC--CCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 000111 1468999997543 211 245667899999999999988743
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0032 Score=49.48 Aligned_cols=38 Identities=39% Similarity=0.673 Sum_probs=29.6
Q ss_pred ceeeEEcchh--hhhC--ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 253 RYDVIWVQWC--IGHL--TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 253 ~fDlIi~~~~--l~~~--~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
+||+|+|-.+ ..|+ .|+-+..+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 4999998654 2344 445589999999999999999988
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.022 Score=46.05 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=41.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+.+|+|||++.|..++.++.++...|+++++++...+..+++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999999989999999999999999999887653
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0096 Score=58.37 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCCCCCCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 246 DFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 246 ~~~~~~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.-+.+||+|.+...+.... .-++..++-++-++|+|||+++|-|.
T Consensus 420 ~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 420 AFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 4444578999999998877654 34578999999999999999999776
|
; GO: 0008168 methyltransferase activity |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.019 Score=55.80 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCCceEEEEeccccHHHHH--HHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKN--LLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~--ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..+..++|+|.|.|.-.-. .+-+. ...++.||.|..|..............+...-....++..
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~------------- 265 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQ------------- 265 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcc-------------
Confidence 3567888999887754432 22222 2379999999999999887765421111111111111111
Q ss_pred ccceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 233 SKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.++- ..+.||+|++.+.++++..... ...-..+.+..++||+++++|+-..-|
T Consensus 266 -------------~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 266 -------------RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred -------------cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 1221 2456999999999998865432 223345667889999999999855544
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.029 Score=50.68 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
...+||++|+|+|..+..+......+|...|....+.. .+.+....+.... ..........+.|.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~--~~g~~v~v~~L~Wg------------ 150 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALN--QLGGSVIVAILVWG------------ 150 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhh--hcCCceeEEEEecC------------
Confidence 35679999999998887443335557888887554433 3322211111000 00001111111100
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+..+..+ +..+|+|+++.++.+-. ....++..++..|-.+|.+++.-.
T Consensus 151 ----~~~~~~~~~-~~~~DlilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 151 ----NALDVSFRL-PNPFDLILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ----CcccHhhcc-CCcccEEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 000001111 11299999999876644 557778888888888886555433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.027 Score=49.10 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+...+.|||||.|.+...+ +..+. -+.|.++-...-+..++++...
T Consensus 60 ~kvefaDIGCGyGGLlv~L-sp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL-APKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhc-cccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 4578999999999999874 55443 6899999999988888877544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.088 Score=48.33 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+++|+-||.|..+..+...++..+.++|+++..++..+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999887766677789999999999999888864
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.04 Score=49.63 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=43.5
Q ss_pred hhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 135 ~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
......|+..++.. ..++.+|+|||||.=-++...+..... .++++|++..+++.....+...
T Consensus 89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l 152 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL 152 (251)
T ss_dssp GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence 34556666666653 225789999999999888865543322 7999999999999998776433
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.031 Score=46.02 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=50.9
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch
Q 021836 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW 261 (307)
Q Consensus 182 ~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~ 261 (307)
+|+++|+-+.+++..++++.+.+.. .++.++..+-+ .+. ...+ .+++|+++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe-------------------~l~-~~i~-~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHE-------------------NLD-EYIP-EGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GG-------------------GGG-GT---S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHH-------------------HHH-hhCc-cCCcCEEEEEC
Confidence 5899999999999999998765432 23444433322 111 1211 25789888663
Q ss_pred hhhhCChh---------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 262 CIGHLTDD---------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 262 ~l~~~~~~---------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. |++.. .-...++.+.+.|+|||.++++--
T Consensus 55 G--YLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 55 G--YLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp S--B-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred C--cCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 3 44322 246778999999999999998643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=44.07 Aligned_cols=48 Identities=21% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~ 204 (307)
.+.+++||||--+++..+++..... .+++.|+++..++.|.+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~ 64 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN 64 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC
Confidence 4456999999999999988877654 89999999999999998886543
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.14 Score=47.61 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=76.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc-------C--------------CcEEEEeCCH--HHHHHHHHHhCCCCCCCcccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVS--HFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-------~--------------~~v~~vD~s~--~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
+..+||.||.|.|.-...+.+.. . -+|++||+.+ ..++.....+....... +
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~s----k- 160 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLS----K- 160 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcc----c-
Confidence 34799999999986555443322 0 1689999876 46666666664432111 0
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCC------CCceeeEEcchhhhhC---ChhHHHHHHHHHHHcCCC
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE------TGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~fDlIi~~~~l~~~---~~~dl~~~l~~l~~~Lkp 284 (307)
+ ..... ........-+++|.+.|+..-.... ....|+|...+++.-+ ....-.++|.++...++|
T Consensus 161 --~-a~~~~---~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~ 234 (315)
T PF11312_consen 161 --Y-ASAAN---WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP 234 (315)
T ss_pred --c-ccccc---cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC
Confidence 0 00000 0001123456788888876433211 1257889887776543 122447899999999999
Q ss_pred CcEEEEEec
Q 021836 285 GGFFVLKEN 293 (307)
Q Consensus 285 GG~lii~e~ 293 (307)
|-+|+|+|.
T Consensus 235 GslLLVvDS 243 (315)
T PF11312_consen 235 GSLLLVVDS 243 (315)
T ss_pred CcEEEEEcC
Confidence 999999986
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.29 Score=42.86 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred cCCCccCCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 149 ~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
.+...+.+++.+||=+|+.+|....++..-.. ..+++|+.|+.+....-.....- .+.+.+ -.|.. .
T Consensus 68 Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~PI-L~DA~----~ 135 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-------PNIIPI-LEDAR----K 135 (231)
T ss_pred CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-------CCceee-ecccC----C
Confidence 44444567899999999999998887543322 37999999998655443333211 001111 11111 0
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++ ....--+..|+|+.--+ .+.+.+-+..++...||+||+++++
T Consensus 136 P~----------------~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 136 PE----------------KYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cH----------------HhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 00 11111245788886322 1123455677889999999966553
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.051 Score=49.07 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=36.5
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
+|||+-+|+|..+..++..+.. |+++|-++.+....+..+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHH
Confidence 8999999999999977777665 99999999998888877653
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.1 Score=50.18 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCceeeEEcchhhhhCCh------------------------------------hHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 249 PETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 249 ~~~~~fDlIi~~~~l~~~~~------------------------------------~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++.++.+++++++++|+++. .|+..+|+.=++-|.|||.++++=
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 35788899999888887752 123445555567789999999864
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.077 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=16.3
Q ss_pred CCCceEEEEeccccHHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLI 177 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~ 177 (307)
....+|+|+||..|..|..++.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3568999999999999886655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.066 Score=51.76 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=40.9
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
...+||||.|||.++......+...|++++.-..|.+.|++.....++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 467999999999999865556777999999999999999998876655
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.32 Score=43.87 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHh-CCCCCCCcccccccceeecCcccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-----~~v~~vD~s~~~l~~A~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
.....+|+|+|+..-+..++..+. .+++.+|+|...+....+.+ ..+. +..+.-++.+.+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~-------- 143 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYE-------- 143 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHH--------
Confidence 468899999999988886666543 27999999999887654433 2221 111222233332
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. ...++ ..++-=.++...++.+++..+-..|+.++...|+||-+|++.
T Consensus 144 ----------~~-La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 144 ----------LA-LAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred ----------HH-Hhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 00 00121 122233444556789999888999999999999999998884
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.056 Score=50.36 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++..++|.-+|.|..+..++.... .+|+|+|.++.+++.+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3667899999999999998887653 5899999999999999988754
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.061 Score=49.52 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred CCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..+.++|=||.|.|.+......+ .+.+++.+|+....++..++.++..... -....+.....
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iG--------------- 182 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIG--------------- 182 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEec---------------
Confidence 35678999999999988865443 3448999999999999998887543110 01222222222
Q ss_pred ceeeeccCCcCCCCC-CCCceeeEEcch--hhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTP-ETGRYDVIWVQW--CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~-~~~~fDlIi~~~--~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|-...+.. ..++||+|+.-- ...-.-..-.+.+++.+.+.||+||+++...-
T Consensus 183 -------DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 183 -------DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred -------cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 21111111 257899999532 11111111246788999999999999988653
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCceEEEEeccccHHHHHHHH-hcCC-cEEEEeCCHHHHHHHHHHhCCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLI-RYFN-EVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~-~~~~-~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.+..++||||.|.--+-. ++- +.+. +.+|.|+++..++.|+..+..+
T Consensus 77 ~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N 125 (292)
T COG3129 77 GKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISAN 125 (292)
T ss_pred cCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcC
Confidence 467899999877653322 221 1222 7899999999999999887654
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.25 Score=47.61 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=42.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMA 207 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~ 207 (307)
+.++.||||..+-+|.=|.++++-.- ..|++.|.+..-+...+.++.+.++.|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 56889999999999987776655433 379999999999999998887776543
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.16 Score=50.20 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=77.0
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~---~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
+.+..++. ..+....+....|+-+|+|-|-+....+.. ... +++++|-+|.++-..+.+.. .. ...++
T Consensus 351 Ai~~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~-----W~~~V 423 (649)
T KOG0822|consen 351 AILKALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-EC-----WDNRV 423 (649)
T ss_pred HHHHHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hh-----hcCee
Confidence 34444444 322222223568899999999776655443 122 68999999998877765321 11 24456
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHH-HHHHHHHHHcCCCCcEEEE
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl-~~~l~~l~~~LkpGG~lii 290 (307)
.++..|+. .|.++..+.|++++- .|.-|.+.++ .+.|.-+.+.|||+|+.|=
T Consensus 424 tii~~DMR-----------------------~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 424 TIISSDMR-----------------------KWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred EEEecccc-----------------------ccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 66666666 676545789998863 3444544343 6789999999999998764
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.4 Score=39.95 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+..-++.+++-. . .++..+.+|+|+|.|++-......+...-+|++.++-.+..++-+.
T Consensus 56 AtteQv~nVLSll-~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a 115 (199)
T KOG4058|consen 56 ATTEQVENVLSLL-R---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHA 115 (199)
T ss_pred ccHHHHHHHHHHc-c---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHH
Confidence 3444555555522 2 3466899999999999887544444346899999999998887554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.66 Score=41.67 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=53.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+||-+|=..-......+.....+|+.+|+++.+++..++.+.+.++ . |
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~----------------------i 94 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------P----------------------I 94 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------------------------------E
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------c----------------------e
Confidence 4678999985554322212334456999999999999999877654332 1 2
Q ss_pred eeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCc
Q 021836 237 KIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG 286 (307)
+....|+...++.+ .++||++++.-.- +.+.+.-|+.+....||..|
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPY---TPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---S---SHHHHHHHHHHHHHTB-STT
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence 33444444455442 5899999985431 12357888999999998777
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.54 Score=44.45 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=64.1
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+|+=+|+| .|..+..++.....+|+++|.|++-++.|++.-... ++.....
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~----------- 220 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDS----------- 220 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCc-----------
Confidence 4577888888876 445666666655578999999999999998764321 1111100
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
+ ....-.+.||+|+..-. ...+....+.|++||.++++-+..
T Consensus 221 --------~---~~~~~~~~~d~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 221 --------D---ALEAVKEIADAIIDTVG---------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred --------h---hhHHhHhhCcEEEECCC---------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 0 01001234999987543 234677788899999999987763
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.37 Score=42.58 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=32.7
Q ss_pred CCCceEEEEeccccHHHHHHHHh----cCCcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~----~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+.+++|-.||.|++.- ++.- ...+|.+.|+++.+++.|++++.
T Consensus 50 ~~p~tLyDPCCG~gyLLT-VlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLT-VLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHH-HHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHH-HHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 367899999999998765 2332 23479999999999999998874
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.41 Score=44.70 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++..++|.--|.|..+..+|..... +|+|+|.++.+++.+++++..
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~ 66 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK 66 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh
Confidence 46789999999999999999987654 899999999999999988754
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.23 Score=47.78 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+.+|||.=+|+|.=++..+.. ...+|+.-|+|+.+++..++++..+++.+ ..+.+.+.|..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn------------ 112 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDAN------------ 112 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HH------------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHH------------
Confidence 4579999999999877766666 34589999999999999999976544321 12233333332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-+......||+|=.- -+. ....++..+.+.++.||+|.++-.
T Consensus 113 ----------~ll~~~~~~fD~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 113 ----------VLLYSRQERFDVIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----------HHHCHSTT-EEEEEE------SS----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----------HHhhhccccCCEEEeC----CCC--CccHhHHHHHHHhhcCCEEEEecc
Confidence 1111135789999542 122 347889999999999999999754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.31 Score=42.27 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=40.5
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.-+..+++.++... .+++..|||.=||+|..+.. +.....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~a-a~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVA-AEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHH-HHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHH-HHHcCCeEEEEeCCHHHHHHhcC
Confidence 34556777776533 23788999999999999984 55566689999999999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.092 Score=48.06 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=30.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~ 194 (307)
....+|||+|||+|.-.+.........++..|.+...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 367899999999998887654455457899998887774
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.44 Score=43.86 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=47.5
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
-+..+++.++... .+++..|||.=||+|..+.. +.....+.+|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4456777776533 23788999999999999984 55666689999999999999999975
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.095 Score=46.94 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=43.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.+|||+-+|-|..+. +++....+|+++|-||-+....+.-+.... .+.. ....-..+|++
T Consensus 77 ~~VLDaTaGLG~Da~-vlA~~G~~V~~lErspvia~Ll~dGL~r~~--------------~~~~-----~~~~~~~ri~l 136 (234)
T PF04445_consen 77 PSVLDATAGLGRDAF-VLASLGCKVTGLERSPVIAALLKDGLKRAQ--------------QDPE-----LLAEAMRRIQL 136 (234)
T ss_dssp --EEETT-TTSHHHH-HHHHHT--EEEEE--HHHHHHHHHHHHHHH--------------HSTT-----THHHHHHHEEE
T ss_pred CEEEECCCcchHHHH-HHHccCCeEEEEECCHHHHHHHHHHHHHHH--------------hCcH-----hHHHHHhCCEE
Confidence 489999999999999 455444579999999987666554332110 0000 00001345777
Q ss_pred eccCCcCCCCCCCCceeeEEcc
Q 021836 239 AKKGISADFTPETGRYDVIWVQ 260 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~ 260 (307)
.+.|....+..++++||+|++-
T Consensus 137 ~~~d~~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 137 IHGDALEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp EES-CCCHCCCHSS--SEEEE-
T ss_pred EcCCHHHHHhhcCCCCCEEEEC
Confidence 7777665555457899999954
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.16 Score=42.78 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCceeeEEcchhhhhCC-----hh----HHHHHHHHHHHcCCCCcEEEEEeccCCCCcccC
Q 021836 251 TGRYDVIWVQWCIGHLT-----DD----DFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 302 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~~~-----~~----dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d 302 (307)
.++||++.|..++.|+. ++ --...+.++..+|||||.|++.-.+..+.....
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN 121 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN 121 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe
Confidence 57899999998888862 11 114568899999999999999888777665443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.77 Score=41.33 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC---cEEEEeCCHH----HHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----FLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~---~v~~vD~s~~----~l~~A~~~ 199 (307)
.++..+||-+|+++|..-.++ +.... -|++|+.|+. .+..|+++
T Consensus 154 ikpGsKVLYLGAasGttVSHv-SDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHV-SDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred ecCCceEEEeeccCCceeehh-hcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 457899999999999876654 44332 6999998874 44455444
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.44 Score=37.46 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~ 188 (307)
...|+-.+...... ..+....+|+|||+|.+..-+...++. =.|+|.
T Consensus 42 IAAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 34555555543332 235568999999999998855555553 577775
|
; GO: 0008168 methyltransferase activity |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.3 Score=44.06 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---------~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+.+|+|+|+|+|.++..++.... -+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 358999999999999998887532 1699999999999988888765
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.56 Score=41.19 Aligned_cols=112 Identities=7% Similarity=0.067 Sum_probs=47.6
Q ss_pred CCceEEEEeccccHHHHHHHH---hc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLI---RY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~---~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|.-.|..+..++. .. ..+|+++|+.....+.. .++..+ ...+++++..+..+.+...+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp-----~~~rI~~i~Gds~d~~~~~~-- 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP-----MSPRITFIQGDSIDPEIVDQ-- 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHT--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc-----ccCceEEEECCCCCHHHHHH--
Confidence 457899999999988774432 22 13899999954332221 111100 01334444433321000000
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..... ......+|+.-. +|.. +.....|+.....+++|+++++-|.
T Consensus 103 ------------v~~~~-~~~~~vlVilDs--~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 103 ------------VRELA-SPPHPVLVILDS--SHTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ------------SGSS-----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ------------HHHhh-ccCCceEEEECC--CccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 00111 112334555322 1322 1456678889999999999998664
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.4 Score=42.06 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||..|||. |..+..++..... ++++++.++..++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34667899999988 7787776666553 599999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.3 Score=41.47 Aligned_cols=41 Identities=20% Similarity=0.049 Sum_probs=35.1
Q ss_pred EEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 161 ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
|+|+-||.|.++..+-..++.-+.++|+++...+.-+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 58999999999998766777778899999999998888764
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.3 Score=39.58 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+..++..++... .+++..|||.=||+|..+.. +.....+.+|+|+++...+.+.+++..
T Consensus 148 kP~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~a-a~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 148 KPVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVA-ALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CcHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 3445666665422 23678999999999999884 445555799999999999999888743
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.2 Score=42.66 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
+-..++|+|+|.|.++. +++-.++ .|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr-~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSR-FLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHH-HHhhccCceEEEeccchHHHHHHHH
Confidence 44679999999999999 4555544 89999999888877753
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.2 Score=40.57 Aligned_cols=45 Identities=13% Similarity=-0.077 Sum_probs=33.7
Q ss_pred CCceEEEEeccccHHHHHHHHhc---C--CcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---~--~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+..+|.|-.||+|.......... . ..++|.|+++.....|+-++-
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~ 235 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI 235 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH
Confidence 45699999999997765433221 1 248999999999999987763
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.64 E-value=3 Score=38.72 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
++++...+|.--|.|..+..+|..+. .+++++|.++.+++.|++.+..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 44678999999999999999999986 3799999999999999998754
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=3.6 Score=41.25 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=34.0
Q ss_pred CCCCceEEEEecccc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG-~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+|+=+|||.= ..+...+.....+|+++|.++.-++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 346899999999974 444444444444899999999999998763
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.2 Score=40.96 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=36.6
Q ss_pred eEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 160 ~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+++|+=||.|.++..+-..++..+.++|+++...+.-+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999999998777788889999999999999888874
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.2 Score=38.69 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCceEEEEeccccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~---~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++..|+|+|.-.|..+..++.. .. -+|.++|++-..++.+.... ..+.|+..+-.+.....|
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-----------p~i~f~egss~dpai~eq-- 135 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-----------PDILFIEGSSTDPAIAEQ-- 135 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-----------CCeEEEeCCCCCHHHHHH--
Confidence 4578999999999887754432 12 27999999877665543321 234454443321111111
Q ss_pred CccceeeeccCCcCCCCCCCCce-eeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 232 GSKKVKIAKKGISADFTPETGRY-DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~f-DlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
++ .. .+.| -+.+|-.+-|++. ...+.++.+..+|.-|-++++-|.+.
T Consensus 136 ---------i~---~~---~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 136 ---------IR---RL---KNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred ---------HH---HH---hcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccc
Confidence 10 01 1112 2233334444544 45667888889999999999877543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.66 Score=44.69 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=48.8
Q ss_pred ccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
-.+|++...++.+-+. .+++++|.++....+.+|++.++.+.++.+.+.++|||.+++-.-
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 3556666665544332 247899999999999999999999999999999999999998543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.48 E-value=2.6 Score=39.67 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=38.7
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+++|+=||.|.+...+-..++.-+.++|+++..++.-+.++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 46899999999999998777788889999999999998888774
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=86.79 E-value=3.1 Score=35.24 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCCceeeEEcchhhhhCC-------------hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 250 ETGRYDVIWVQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 250 ~~~~fDlIi~~~~l~~~~-------------~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.||.|+-++. |.. ..-+..+++.+..+|+++|.+.|+-.
T Consensus 72 ~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 72 KNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred cCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4678999998765 333 12357899999999999999998644
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.9 Score=41.14 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=67.8
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|+|.=+|||.=++.++..... +|+.-|+||..++.++++...+...+ ...+..|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~------~~v~n~DAN-------------- 112 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED------AEVINKDAN-------------- 112 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc------ceeecchHH--------------
Confidence 578999999999877766555444 79999999999999999886441111 111111111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.-+......||+|=.- -+. ....++..+.+.++.||++.++-.
T Consensus 113 --------~lm~~~~~~fd~IDiD----PFG--SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 113 --------ALLHELHRAFDVIDID----PFG--SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --------HHHHhcCCCccEEecC----CCC--CCchHHHHHHHHhhcCCEEEEEec
Confidence 0111113678887431 222 237788899999999999999754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.67 E-value=3 Score=39.22 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+.+.++|=+|+|+ |..+...++. +..+|+.+|+++.-++.|++ +.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~G 214 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FG 214 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hC
Confidence 45788999999997 4555533333 34489999999999999998 53
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=86.50 E-value=12 Score=33.07 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=67.1
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccH--HHHHHH--Hhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~--~t~~ll--~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
+...+||..+... .....|+++.|+.|. .+..|. ++. ..++++|-+.+..+...++.+...+..
T Consensus 27 p~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~---- 95 (218)
T PF07279_consen 27 PGVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS---- 95 (218)
T ss_pred CCHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc----
Confidence 4567888887752 234678898766442 344332 232 337999999888887777777544332
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHH-HHHHHHHHcCCCCcEEE
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~-~~l~~l~~~LkpGG~li 289 (307)
....|+..+.. ++..+.-...|+++.-.- ..+.. .+|+.+. +.|.|-++
T Consensus 96 -~~vEfvvg~~~----------------------e~~~~~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 96 -DVVEFVVGEAP----------------------EEVMPGLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred -ccceEEecCCH----------------------HHHHhhccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEE
Confidence 22334333211 012112345777765321 11333 5555433 56779999
Q ss_pred EEeccCC
Q 021836 290 LKENIAR 296 (307)
Q Consensus 290 i~e~~~~ 296 (307)
+..|...
T Consensus 146 V~~Na~~ 152 (218)
T PF07279_consen 146 VCYNAFS 152 (218)
T ss_pred EEecccc
Confidence 9888655
|
The function of this family is unknown. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=86.37 E-value=3.5 Score=37.83 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||..|+| .|..+..++.....+|++++.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 356788888876 3666666655555579999999998888855
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=86.13 E-value=7.4 Score=35.37 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=32.5
Q ss_pred ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 253 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 253 ~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.--++++-.++.|++.++...+++.+.+...||+.+++
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34577778889999999999999999998889888776
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=3.9 Score=38.25 Aligned_cols=97 Identities=21% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCceEEEEecc-ccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+||=.||| .|..+..++... ..+|+++|.++.-++.+++. ... ..++....++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~--------~vi~~~~~~~~------------ 227 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD--------KLVNPQNDDLD------------ 227 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc--------EEecCCcccHH------------
Confidence 46678878764 233344333333 33699999999999888763 211 00111000010
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+....+.+|+|+-.-. . ...+..+.+.|++||.+++...
T Consensus 228 -----------~~~~~~g~~D~vid~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 228 -----------HYKAEKGYFDVSFEVSG-----H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----------HHhccCCCCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 11111235899885321 1 2346677888999999998753
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.1 Score=46.32 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=34.5
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcch-hhhhCChhHH--HHHHHHHHHcCCCCcEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQW-CIGHLTDDDF--VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~~dl--~~~l~~l~~~LkpGG~lii 290 (307)
++++...|....+..-...+|+|+.-. +-..- +++ .++++.+.++++|||.|+-
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKN--PDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccC--hhhccHHHHHHHHHHhCCCCEEEE
Confidence 455555665443332235699999642 22121 232 7899999999999999884
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.50 E-value=3.3 Score=39.22 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCceEEEEeccc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+..+|+=+|||+ |.++..+++.. ..+|+.+|.++.-++.|++........+.... +.. .+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~--------~~~-----~~----- 229 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED--------DAG-----AE----- 229 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc--------cHH-----HH-----
Confidence 334899999997 44444333332 35899999999999999986543211100000 000 00
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.. ... ....+|+++-.-. ....+..+.++++|||.+++.-..
T Consensus 230 -----~~----~~t-~g~g~D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 -----IL----ELT-GGRGADVVIEAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -----HH----HHh-CCCCCCEEEECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 00 110 1236999984322 144688899999999999987554
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.50 E-value=0.74 Score=45.33 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||.=|++|.-++..+.... .+|++-|.++..++..+++....+..+ .+.....|..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~-----ive~~~~DA~----------- 171 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVED-----IVEPHHSDAN----------- 171 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchh-----hcccccchHH-----------
Confidence 3678999999999988887666544 389999999999998888875432211 1111111110
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ++-........||+|=.-- +. ....||..+.+.++.||+|+++-.
T Consensus 172 ------~--lM~~~~~~~~~FDvIDLDP----yG--s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 172 ------V--LMYEHPMVAKFFDVIDLDP----YG--SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ------H--HHHhccccccccceEecCC----CC--CccHHHHHHHHHhhcCCEEEEEec
Confidence 0 0001111246899995421 11 236788889999999999999643
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.5 Score=39.15 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCceeeEEcchh-----hhhCCh----hHHHHHHHHHHHcCCCCcEEEE
Q 021836 251 TGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 251 ~~~fDlIi~~~~-----l~~~~~----~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+.|+|+|-.. +|.++. .-+...|.-...+|||||.|+-
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 457899998643 333321 1234566777889999999874
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.10 E-value=2.2 Score=40.54 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~---------~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.+..++|+|+|+|.++..+++.. ..++..||+|+.....=++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 56789999999999999887753 127999999999988877777644
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=12 Score=37.13 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=37.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
...+++|+=||.|.++..+-..++..|.++|+++.+.+.-+.++
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 46799999999999999876667777899999998888777765
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.98 E-value=5.8 Score=34.77 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 156 ~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.++.+||-.|+|. |..+..++.....+|++++.++...+.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 3677899999985 6666655555556899999998887777543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.1 Score=38.81 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---CcEEEEeC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEP 188 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---~~v~~vD~ 188 (307)
+++.+|||+||.+|.++.- +.... +-|.|||+
T Consensus 68 ~p~~~VlD~G~APGsWsQV-avqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQV-AVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCCEEEEccCCCChHHHH-HHHhhCCCceEEEEee
Confidence 3789999999999999994 44333 26899997
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.11 E-value=0.94 Score=44.53 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee-ecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~ 234 (307)
....+|-+|-|.|.+...+..... .++++|++.|.|++.|+.++.-... .+.+.. ..++.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~------------ 356 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLD------------ 356 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchH------------
Confidence 346789999999988885433333 3899999999999999988742210 000110 11111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEc----chhhhhC--ChhH--HHHHHHHHHHcCCCCcEEEEEeccCCCCcc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLKENIARSGTF 300 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~----~~~l~~~--~~~d--l~~~l~~l~~~LkpGG~lii~e~~~~~~~~ 300 (307)
|.+-=. ....++..||+++. .. .|-+ +.+. -..++..+...|.|.|.|++ ..++++..+
T Consensus 357 ---~~~~~~--k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i-nlv~r~~~~ 423 (482)
T KOG2352|consen 357 ---FLQRTA--KSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFII-NLVTRNSSF 423 (482)
T ss_pred ---HHHHHh--hccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEE-EEecCCcch
Confidence 111000 11123567898873 22 2222 2222 26688999999999999976 345555544
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.28 E-value=3.5 Score=32.40 Aligned_cols=92 Identities=18% Similarity=0.121 Sum_probs=56.4
Q ss_pred cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCC
Q 021836 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISAD 246 (307)
Q Consensus 167 GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~ 246 (307)
|.|..+..+++....+|+++|.++.-++.+++.-... .+.....++. .+ + ..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~---------~~~~~~~~~~-----~~---------i-----~~ 52 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADH---------VIDYSDDDFV-----EQ---------I-----RE 52 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESE---------EEETTTSSHH-----HH---------H-----HH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccc---------cccccccccc-----cc---------c-----cc
Confidence 4677888777666678999999999999987643110 0010000000 00 0 01
Q ss_pred CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 247 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 247 ~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
+. ....+|+|+-.-. -...++....+|+|+|.+++.-...
T Consensus 53 ~~-~~~~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 53 LT-GGRGVDVVIDCVG--------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HT-TTSSEEEEEESSS--------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cc-ccccceEEEEecC--------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 11 1247999985322 1456788889999999999976543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.22 E-value=7 Score=36.09 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=29.2
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
++.+||-.|||. |..+..++..... .+++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 567888888765 5565555554433 68999999888886654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.61 E-value=7 Score=37.32 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=37.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-----~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++.+|||+.+.+|.=|..++..... .|++-|.++.-+......+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence 458899999999999999888876542 58999999887766665553
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=81.18 E-value=9.4 Score=35.77 Aligned_cols=96 Identities=23% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeC---CHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~---s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+||=+|+|. |..+..+++....+|++++. ++.-++.+++. .. ..+.....+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga---------~~v~~~~~~~~---------- 231 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA---------TYVNSSKTPVA---------- 231 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC---------EEecCCccchh----------
Confidence 566888888753 44444444443337999986 66666766542 11 00100000000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.. ...+.+|+|+-.-. . ...+..+.+.|++||.+++....
T Consensus 232 -------------~~-~~~~~~d~vid~~g-----~---~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 232 -------------EV-KLVGEFDLIIEATG-----V---PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -------------hh-hhcCCCCEEEECcC-----C---HHHHHHHHHHccCCcEEEEEecC
Confidence 00 01246898885422 1 23567788899999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 307 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 1e-36 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 2e-32 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 1e-60
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 41/240 (17%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAK 240
DLLEPV H L+ A+ LA F ++
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASME------------------ 150
Query: 241 KGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 300
T YD+I +QW +LTD DFV FFK + L P G+ KEN + F
Sbjct: 151 -----TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 170 bits (431), Expect = 5e-52
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 32/209 (15%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ L DCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCAL---DCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128
Query: 213 ATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFV 272
N+FC LQ DFTPE YDVIW+QW IGHLTD
Sbjct: 129 VRNYFCCGLQ-----------------------DFTPEPDSYDVIWIQWVIGHLTDQHLA 165
Query: 273 SFFKRAKVGLKPGGFFVLKENIARSGTFL 301
F +R K L+P G V+K+N+A+ G L
Sbjct: 166 EFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 28/152 (18%), Positives = 40/152 (26%), Gaps = 43/152 (28%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIW 258
L H+ YD +W
Sbjct: 84 RLGRPVRTM-LFHQL-----------------------------------DAIDAYDAVW 107
Query: 259 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
C+ H+ D+ K LKPGG F
Sbjct: 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 46/165 (27%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDV 256
H ++ F D ++D
Sbjct: 87 ------HGLDNVE-----FRQ-------------------------QDLFDWTPDRQWDA 110
Query: 257 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
++ + H+ DD F +F++ + + PGG +
Sbjct: 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLE 155
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 7e-06
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 33/132 (25%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQ--- 139
Query: 222 QGQREKNKKVGSKKVKIAKKGISADFT--PETGRYD-VIWVQWCIGHLTDDDFVSFFKRA 278
D + R+ V+ I L + D +
Sbjct: 140 -----------------------GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASV 176
Query: 279 KVGLKPGGFFVL 290
+ L+PGG F+L
Sbjct: 177 REHLEPGGKFLL 188
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 25/130 (19%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD- 784
Query: 220 PLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 279
G +F D+ I H+ +D F ++
Sbjct: 785 ----------------------GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVL 822
Query: 280 VGLKPGGFFV 289
P V
Sbjct: 823 SLFHPKLLIV 832
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 6e-05
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 29/152 (19%)
Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
L G G G I +L +++EP + + +E +A +++
Sbjct: 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-------- 108
Query: 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSF 274
+N K K ++ E ++D I + + ++ D +
Sbjct: 109 ------------ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPAT 154
Query: 275 FKRAKVGLKPGGFFVLKENIARSGTFLLSHSL 306
K L ++ SG L
Sbjct: 155 LKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY 186
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 35/130 (26%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR+ H + H T
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQ-----THPSVTFHHGT------ 92
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
D + R+ + + + H+ + ++
Sbjct: 93 -----------------------ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129
Query: 281 GLKPGGFFVL 290
++ GG ++
Sbjct: 130 AVEDGGGLLM 139
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 25/129 (19%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E + + +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE------RLDRLRLPRNQWERLQ 87
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
L +G YD V I HL +F +
Sbjct: 88 L------------------IQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 281 GLKPGGFFV 289
+P V
Sbjct: 130 FAQPKIVIV 138
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 43/160 (26%)
Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
D + + L+ R P A + LD G G ++ + + LE
Sbjct: 21 KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74
Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETG 252
L AR+ L DM DF
Sbjct: 75 LTHARKRLPDATLHQGDM----------------------------------RDFRLG-R 99
Query: 253 RYDVIWVQW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 290
++ + + +G+L T ++ + L+PGG V+
Sbjct: 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVV 139
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 43/164 (26%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+K F++ + + R + + LD G G T L EV L+
Sbjct: 19 RIERVKAEIDFVEEIF--KEDAKREVRRV--LDLACGTGIPTL-ELAERGYEVVGLDLHE 73
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT-- 248
L AR A + + F D
Sbjct: 74 EMLRVARRK-------AKERNLKIEFLQ--------------------------GDVLEI 100
Query: 249 PETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
+D + + I + ++D F + LKPGG F+
Sbjct: 101 AFKNEFDAV-TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 25/129 (19%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 280
L YD V I HL ++ +F K
Sbjct: 93 L-----------------------VYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFE 129
Query: 281 GLKPGGFFV 289
+P V
Sbjct: 130 FTRPQTVIV 138
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 245 ADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
D +YD I + L + KPGG+ ++
Sbjct: 87 VDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 45/240 (18%), Positives = 71/240 (29%), Gaps = 45/240 (18%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + + LD G+G G +T L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQV--LDLGAGYGALTLPLA 252
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236
R EV +E + + ++ L N + + +
Sbjct: 253 -RMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEALT---------------- 294
Query: 237 KIAKKGISADFTPETGRYDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 290
E R+D+I +G D +F A L+PGG F L
Sbjct: 295 -------------EEARFDIIV---TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 43/164 (26%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+VD K F+ + + LD G G +T+ L F ++
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT-- 248
L A + C D +
Sbjct: 70 EMLSEAENKFRSQGLKP-------RLAC--------------------------QDISNL 96
Query: 249 PETGRYDVIWVQWC-IGHLTD-DDFVSFFKRAKVGLKPGGFFVL 290
++D+I ++ D DD +FK LK GG F+
Sbjct: 97 NINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 40/191 (20%)
Query: 114 EGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK 173
++ D V G + I + F + + N + LD G+G G ++
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSV-SIASVDTENPDI--LDLGAGTGLLSA 60
Query: 174 NLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232
L+ +Y L++ L+ A+ G
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFR------------------------------G 90
Query: 233 SKKVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
+ KVK I AD++ +YD++ I HL D+D +KR+ LK G F+
Sbjct: 91 NLKVKY----IEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN 146
Query: 291 KENIARSGTFL 301
+ + F+
Sbjct: 147 ADLVHGETAFI 157
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 43/159 (27%)
Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
D A L L+ P A + LD G G ++L + V+ LE + L
Sbjct: 32 DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85
Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGR 253
AR DM DF+ R
Sbjct: 86 AIARRRNPDAVLHHGDM----------------------------------RDFSLG-RR 110
Query: 254 YDVIWVQW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 290
+ + + IGHL + + +R + P G V+
Sbjct: 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 307 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.91 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.76 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.73 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.69 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.67 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.66 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.66 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.66 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.65 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.65 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.64 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.64 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.63 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.62 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.62 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.62 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.61 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.61 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.6 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.6 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.6 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.59 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.59 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.59 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.59 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.59 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.59 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.58 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.58 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.57 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.57 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.57 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.56 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.56 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.56 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.55 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.55 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.55 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.55 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.55 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.54 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.53 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.5 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.5 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.49 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.49 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.49 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.48 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.48 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.48 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.48 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.47 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.46 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.46 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.46 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.46 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.45 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.44 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.44 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.43 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.42 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.42 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.42 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.42 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.41 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.41 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.41 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.41 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.4 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.4 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.4 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.4 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.4 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.4 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.39 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.39 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.39 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.38 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.38 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.38 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.38 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.37 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.37 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.37 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.36 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.36 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.36 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.35 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.35 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.35 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.35 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.35 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.34 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.34 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.34 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.34 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.33 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.33 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.32 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.32 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.31 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.31 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.3 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.3 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.3 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.29 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.29 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.29 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.29 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.29 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.28 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.28 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.27 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.27 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.27 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.27 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.25 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.25 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.25 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.24 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.23 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.23 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.22 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.22 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.22 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.21 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.21 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.21 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.21 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.19 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.19 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.18 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.18 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.17 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.17 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.17 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.16 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.16 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.16 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.16 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.15 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.15 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.15 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.15 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.14 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.14 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.13 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.12 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.12 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.12 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.11 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.11 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.11 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.11 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.11 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.08 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.07 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.07 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.07 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.05 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.05 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.05 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.05 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.03 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.03 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.02 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.96 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.95 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.95 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.95 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.94 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.93 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.88 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.83 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.83 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.82 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.77 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.74 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.73 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.69 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.67 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.66 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.66 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.65 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.65 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.61 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.59 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.56 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.55 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.53 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.53 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.53 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.5 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.49 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.47 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.46 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.43 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.39 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.31 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.3 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.27 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.23 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.23 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.21 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.19 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.16 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.16 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.15 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.15 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.15 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.14 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.1 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.08 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.97 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.93 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.92 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.9 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.89 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.77 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.64 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.58 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.57 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.45 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.35 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.14 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.05 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.55 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.54 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.35 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.07 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.65 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.64 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.46 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.43 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.29 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.21 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.1 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.56 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.47 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.78 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.51 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.29 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.23 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 92.21 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.06 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 91.95 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.93 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.92 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.37 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.29 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.16 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 90.99 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 90.83 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.78 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.62 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.39 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.19 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.09 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.96 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 89.75 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.63 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.49 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.9 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 88.8 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 88.53 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 87.51 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 87.49 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 87.45 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 87.39 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.06 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 87.05 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.97 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 86.94 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 86.89 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 86.75 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 86.71 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 86.67 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 86.47 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 86.4 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 86.16 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 86.15 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.96 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 85.72 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 85.71 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 85.1 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 84.95 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 84.78 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.7 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.66 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 84.49 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.26 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 83.84 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 83.82 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.74 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 83.46 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 83.45 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 82.77 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 81.47 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 81.4 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 81.36 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-24 Score=187.90 Aligned_cols=190 Identities=41% Similarity=0.776 Sum_probs=148.4
Q ss_pred CCceeeccccCCCccccCHHHHHHHhhcCccccccchhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHHHH
Q 021836 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (307)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~l 145 (307)
+..+...|.+++|+.|.+++++|++.+......+ ...||....+||+.....++++++++.............++..+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 89 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDP--EKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTTCT--TTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCcccccHHHHHHHHHhcccccc--chhhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhh
Confidence 5677899999999999999999999987643322 23589988999999999998888877665554444444444322
Q ss_pred HhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccc
Q 021836 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQR 225 (307)
Q Consensus 146 l~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (307)
. ..++.+|||+|||+|.++..++..+..+|+++|+|+.|++.+++++... ..+.+...++.
T Consensus 90 ~--------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~--- 150 (254)
T 1xtp_A 90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASME--- 150 (254)
T ss_dssp T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGG---
T ss_pred c--------ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------CceEEEEccHH---
Confidence 1 2357899999999999999877776667999999999999999887431 23455555554
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++.++++||+|++.++++|+++++...+++++.++|||||.|++.+++..
T Consensus 151 --------------------~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 201 (254)
T 1xtp_A 151 --------------------TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp --------------------GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred --------------------HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 444456799999999999999877889999999999999999999997543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=171.01 Aligned_cols=166 Identities=45% Similarity=0.904 Sum_probs=128.1
Q ss_pred cchhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc
Q 021836 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY 179 (307)
Q Consensus 100 ~~~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~ 179 (307)
.....||++..+||+.....++.++++|..+...+......++..++..... ..++.+|||+|||+|.++..++...
T Consensus 25 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~ 101 (241)
T 2ex4_A 25 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPL 101 (241)
T ss_dssp SCHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTT
T ss_pred cccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhc
Confidence 3456889999999999999888888887766666666677777776653311 2256899999999999999766666
Q ss_pred CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEc
Q 021836 180 FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWV 259 (307)
Q Consensus 180 ~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~ 259 (307)
..+|+++|+|+.|++.|++++...+ ...+.+...++. .+.+++++||+|++
T Consensus 102 ~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~-----------------------~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 102 FREVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQ-----------------------DFTPEPDSYDVIWI 152 (241)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGG-----------------------GCCCCSSCEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChh-----------------------hcCCCCCCEEEEEE
Confidence 5589999999999999998875321 122445555544 45455678999999
Q ss_pred chhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 260 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 260 ~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++++|++++++..+++++.++|||||.|++.+++...
T Consensus 153 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 190 (241)
T 2ex4_A 153 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190 (241)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC
Confidence 99999999777889999999999999999999876554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=153.40 Aligned_cols=111 Identities=14% Similarity=0.277 Sum_probs=89.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--C-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++.... . +|+|+|+|+.|++.|++++...+. ...+.+.+.++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~----------- 133 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIR----------- 133 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTT-----------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeecccc-----------
Confidence 778999999999999997665532 2 799999999999999998765432 123444455444
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
+++ .++||+|+++++++|+++++...++++++++|||||.|++.|.+...
T Consensus 134 ------------~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 134 ------------DIA--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp ------------TCC--CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred ------------ccc--ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 453 35699999999999999888889999999999999999999976544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=140.66 Aligned_cols=116 Identities=25% Similarity=0.288 Sum_probs=91.5
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
....++..+.. .++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++. ..+.+
T Consensus 33 ~~~~~l~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~----------~~~~~ 93 (220)
T 3hnr_A 33 HYEDILEDVVN--------KSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP----------KEFSI 93 (220)
T ss_dssp THHHHHHHHHH--------TCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC----------TTCCE
T ss_pred HHHHHHHHhhc--------cCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC----------CceEE
Confidence 34455655543 25679999999999999976665 4479999999999999998864 13455
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
...++. .++.+ ++||+|++..+++|+++++...+++++.++|||||.+++.+...
T Consensus 94 ~~~d~~-----------------------~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 94 TEGDFL-----------------------SFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp ESCCSS-----------------------SCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred EeCChh-----------------------hcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 556555 55444 89999999999999997766669999999999999999987543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=144.06 Aligned_cols=111 Identities=22% Similarity=0.373 Sum_probs=90.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...+ .+.+...++.
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~d~~------------ 102 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--------KVKYIEADYS------------ 102 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--------TEEEEESCTT------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--------CEEEEeCchh------------
Confidence 366899999999999999876665 3389999999999999999875421 3455555554
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
.++++ ++||+|++..+++|+++++...+++++.++|||||.+++.+....+.
T Consensus 103 -----------~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 154 (234)
T 3dtn_A 103 -----------KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET 154 (234)
T ss_dssp -----------TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred -----------ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence 44443 79999999999999997777789999999999999999998765443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=136.18 Aligned_cols=139 Identities=17% Similarity=0.281 Sum_probs=101.0
Q ss_pred hhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH
Q 021836 111 SYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 111 ~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~ 190 (307)
++|+.....|+...+...... .....++..++.. .+.+|||+|||+|.++..++.... +|+++|+|+
T Consensus 7 ~~y~~~a~~y~~~~~~~~~~~----~~~~~~l~~~~~~--------~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~ 73 (203)
T 3h2b_A 7 KAYSSPTFDAEALLGTVISAE----DPDRVLIEPWATG--------VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPAT 73 (203)
T ss_dssp HHHHCTTTCHHHHTCSSCCTT----CTTHHHHHHHHHH--------CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCH
T ss_pred HHHhhHHHHHHHHhhhhcccc----HHHHHHHHHHhcc--------CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCH
Confidence 455555555544333222111 1234556665542 357999999999999997766644 799999999
Q ss_pred HHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH
Q 021836 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD 270 (307)
Q Consensus 191 ~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d 270 (307)
.|++.++++.. .+.+...++. .++.++++||+|++..+++|++.++
T Consensus 74 ~~~~~a~~~~~-----------~~~~~~~d~~-----------------------~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 74 RLVELARQTHP-----------SVTFHHGTIT-----------------------DLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp HHHHHHHHHCT-----------TSEEECCCGG-----------------------GGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred HHHHHHHHhCC-----------CCeEEeCccc-----------------------ccccCCCCeEEEEehhhHhcCCHHH
Confidence 99999998742 2445555555 4444568999999999999998778
Q ss_pred HHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 271 FVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 271 l~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
...+++++.++|||||.+++......
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 89999999999999999999875443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-17 Score=140.24 Aligned_cols=117 Identities=10% Similarity=-0.033 Sum_probs=82.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....... .. ..+.. .....+|
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~----~~-----~~~~~-------~~~~~~v 84 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHI----TS-----QGDFK-------VYAAPGI 84 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEE----EE-----ETTEE-------EEECSSS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCccc----cc-----ccccc-------cccCCcc
Confidence 568999999999999998766655 7999999999999999886421000 00 00000 0001234
Q ss_pred eeeccCCcCCCCCCC-CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~-~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++.++|+. .+++.+ ++||+|++..+++|++.++...++++++++|||||.+++.
T Consensus 85 ~~~~~d~~-~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 85 EIWCGDFF-ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEECCS-SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEECccc-cCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 45555443 444333 6899999999999999877888999999999999984443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-17 Score=146.56 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=80.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||||||+|..+..+ ...+.+|+|+|+|+.|++.|+++ ..+.+...+.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l-~~~~~~v~gvD~s~~ml~~a~~~------------~~v~~~~~~~e-------------- 91 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGL-AEFFERVHAVDPGEAQIRQALRH------------PRVTYAVAPAE-------------- 91 (257)
T ss_dssp CSSEEEEESCTTTTTHHHH-HTTCSEEEEEESCHHHHHTCCCC------------TTEEEEECCTT--------------
T ss_pred CCCCEEEEcCCCCHHHHHH-HHhCCEEEEEeCcHHhhhhhhhc------------CCceeehhhhh--------------
Confidence 4578999999999999965 55566899999999999876532 23556666666
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++.++++||+|++..++||++ ...++++++++|||||.|++..+
T Consensus 92 ---------~~~~~~~sfD~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 92 ---------DTGLPPASVDVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp ---------CCCCCSSCEEEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------hhcccCCcccEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEEC
Confidence 6766789999999999998775 35789999999999999998775
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=143.42 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=88.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++....+. ...+.+...++.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------- 142 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFL------------- 142 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTT-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCcc-------------
Confidence 36789999999999999987666444899999999999999988643222 123445455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.+++++++||+|++..+++|++ +...+++++.++|||||.|++.+....
T Consensus 143 ----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 143 ----------EIPCEDNSYDFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp ----------SCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred ----------cCCCCCCCEeEEEecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 4555578999999999999998 569999999999999999999986544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=135.37 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++... ....+.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~-------------------- 87 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQ-------------------- 87 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEE--------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceE--------------------
Confidence 567999999999999997665544 4899999999999999999865432100 001233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+.|+. ......++||+|++..+++|++++++..+++++.++|||||+++++.+
T Consensus 88 --~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 88 --LIQGALT-YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp --EEECCTT-SCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred --EEeCCcc-cccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 4444331 333345789999999999999988889999999999999998888776
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=141.73 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=88.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++.....+|+++|+|+.+++.+++++...+. ...+.+...++.
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------- 121 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAM------------- 121 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTT-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECccc-------------
Confidence 46789999999999999977665555899999999999999988754332 113444455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++.++++||+|++..+++|++ +...+++++.++|||||.+++.+....
T Consensus 122 ----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 122 ----------DLPFEDASFDAVWALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp ----------SCCSCTTCEEEEEEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred ----------cCCCCCCCccEEEEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 4555568999999999999998 558999999999999999999886543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-16 Score=139.12 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=88.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||||||+|.++..++.....+|+++|+|+.+++.+++++...+. ...+.+...++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------ 124 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWE------------ 124 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGG------------
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChh------------
Confidence 346789999999999999987755555899999999999999988754332 123344444443
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
+++ ++||+|++..+++|+++++...+++++.++|||||.+++.+....
T Consensus 125 -----------~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 125 -----------QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp -----------GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred -----------hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 442 789999999999999766889999999999999999999876543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=140.51 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.++++.. ...+.+...++.
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~-------------- 108 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLS-------------- 108 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTT--------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhcc---------cCCceEEEcchh--------------
Confidence 5679999999999999976665 4479999999999999987742 223455555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|++..+++|+. +...+++++.++|+|||.+++.+.
T Consensus 109 ---------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 109 ---------SLPFENEQFEAIMAINSLEWTE--EPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp ---------BCSSCTTCEEEEEEESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cCCCCCCCccEEEEcChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEc
Confidence 4555578999999999999997 668999999999999999999874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=135.26 Aligned_cols=104 Identities=20% Similarity=0.329 Sum_probs=85.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++.. ...+.+...++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~~d~~-------------- 100 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHG----------LDNVEFRQQDLF-------------- 100 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGC----------CTTEEEEECCTT--------------
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcC----------CCCeEEEecccc--------------
Confidence 5579999999999999977666 447999999999999998721 123455555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.+ .++++||+|++..+++|++++.+..+++++.++|||||.+++.+...
T Consensus 101 ---------~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 101 ---------DW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp ---------SC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ---------cC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 44 45789999999999999998778999999999999999999998754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=139.56 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=86.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++...+. ..+.+...++.
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~-------------- 95 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAE-------------- 95 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC---------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHH--------------
Confidence 6689999999999999975544 45899999999999999988754322 12445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++++++||+|+++.+++|++ +...+++++.++|||||.|++.+...+.
T Consensus 96 ---------~l~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (260)
T 1vl5_A 96 ---------QMPFTDERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPE 145 (260)
T ss_dssp ---------CCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCS
T ss_pred ---------hCCCCCCCEEEEEEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCC
Confidence 5555678999999999999998 6689999999999999999998765443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=138.06 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=91.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||+|||+|..+..++.....+|+++|+|+.+++.++++.... ..+.+...++.
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~------------ 112 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--------NKIIFEANDIL------------ 112 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--------TTEEEEECCTT------------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEECccc------------
Confidence 3467899999999999999877665558999999999999999887431 23445555554
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
..+.++++||+|++..+++|++.++...+++++.++|||||.+++.+.....
T Consensus 113 -----------~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 113 -----------TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp -----------TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred -----------cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 4455578999999999999997778899999999999999999998865443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=134.67 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...++.+. ...+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-----------------------~~~~ 85 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-----------------------QRKR 85 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-----------------------HHTT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-----------------------cCcc
Confidence 567999999999999997655444 4899999999999999998754322100 0012
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+++.+.|+. ......++||+|++..+++|++++++..+++++.++|||||+++++.+.
T Consensus 86 v~~~~~d~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 86 ISLFQSSLV-YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp EEEEECCSS-SCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred eEEEeCccc-ccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 334444431 3433457899999999999999888899999999999999988887663
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=135.12 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=84.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++. +.+...++.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~d~~-------------- 95 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLG------------RPVRTMLFH-------------- 95 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHT------------SCCEECCGG--------------
T ss_pred CCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhcC------------CceEEeeec--------------
Confidence 5679999999999999976655 3479999999999999998862 234455554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++ .+++||+|++..+++|+++++...+++++.++|||||.+++....
T Consensus 96 ---------~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 96 ---------QLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp ---------GCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------cCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 444 468999999999999999888899999999999999999997553
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=136.25 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=82.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+...+ .+|+|+|+|+.|++.|+++... .+.+...++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~-------------- 96 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKD----------GITYIHSRFE-------------- 96 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCS----------CEEEEESCGG--------------
T ss_pred CCCcEEEECCCCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHH--------------
Confidence 45789999999999999765544 4799999999999999988642 3455555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHH-HcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~-~~LkpGG~lii~e~ 293 (307)
.+ +++++||+|++..+++|++ +...+++++. ++|||||.+++.+.
T Consensus 97 ---------~~-~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 97 ---------DA-QLPRRYDNIVLTHVLEHID--DPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp ---------GC-CCSSCEEEEEEESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---------Hc-CcCCcccEEEEhhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 33 3467899999999999998 5589999999 99999999999874
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=135.58 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=85.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+..+|+++|+|+.+++.++++.. ...+.+...++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~-------------- 100 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIE-------------- 100 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGG--------------
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchh--------------
Confidence 678999999999999998776666589999999999999998874 123455555555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.++.++++||+|++..+++|+. +...+++++.++|||||.|++..
T Consensus 101 ---------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 101 ---------DIAIEPDAYNVVLSSLALHYIA--SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp ---------GCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------hCCCCCCCeEEEEEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEe
Confidence 5555578999999999999997 67999999999999999999964
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=138.05 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=93.5
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 218 (307)
...+..++... ...++.+|||||||+|.++..++.....+|+++|+|+.+++.|++++...++ ...+.+..
T Consensus 58 ~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~ 128 (302)
T 3hem_A 58 YAKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRI 128 (302)
T ss_dssp HHHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEE
T ss_pred HHHHHHHHHHc----CCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEE
Confidence 34455555432 1346789999999999999987776456899999999999999998754332 11344444
Q ss_pred cCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCC-------hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 219 VPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 219 ~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++. ++ +++||+|++..+++|++ ..+...+++++.++|||||.+++.
T Consensus 129 ~d~~-----------------------~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 182 (302)
T 3hem_A 129 QGWE-----------------------EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182 (302)
T ss_dssp CCGG-----------------------GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred CCHH-----------------------Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4444 44 57899999999999994 356789999999999999999998
Q ss_pred eccCC
Q 021836 292 ENIAR 296 (307)
Q Consensus 292 e~~~~ 296 (307)
+....
T Consensus 183 ~~~~~ 187 (302)
T 3hem_A 183 TITIP 187 (302)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 76544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=131.37 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++... ...+.+...++.
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~-------------- 99 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVR-------------- 99 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTT--------------
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchh--------------
Confidence 5689999999999999987776665899999999999999988742 123445455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-------------hhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------------~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++++. ..+...+++++.++|||||.+++.+..
T Consensus 100 ---------~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 100 ---------KLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp ---------SCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ---------cCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 4444567899999999887765 346789999999999999999998763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.35 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.+++++... ...+.+...++.
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~-------------- 81 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIR-------------- 81 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTT--------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchh--------------
Confidence 56899999999999755455554458999999999999999886421 122445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++.++++||+|++..+++|++.++...+++++.++|||||.+++.+....+
T Consensus 82 ---------~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 82 ---------KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp ---------SCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred ---------hCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 4444567999999999999997778899999999999999999998865443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=137.86 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=89.2
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+.. ..+.+...++.
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------ 150 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQGWE------------ 150 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCGG------------
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChH------------
Confidence 3467899999999999999776664448999999999999999987654321 22444444443
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+ +++||+|++..+++|+++++...+++++.++|||||.+++.+....+
T Consensus 151 -----------~~---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 151 -----------DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp -----------GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred -----------HC---CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 44 27899999999999998778899999999999999999998875543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=137.49 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++...+. ..++.+...++.
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~------------- 96 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAA------------- 96 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCT-------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChH-------------
Confidence 36789999999999999977666544899999999999999988754322 123445455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++ +++||+|++..+++|++ +...+++++.++|||||.|++.+..
T Consensus 97 ----------~~~~-~~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 97 ----------GYVA-NEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp ----------TCCC-SSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred ----------hCCc-CCCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCc
Confidence 4444 67899999999999998 5689999999999999999998754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-16 Score=137.98 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+.. .+.+...++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~d~~------------ 97 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK------NVKFLQANIF------------ 97 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC------SEEEEECCGG------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEcccc------------
Confidence 4678999999999999998766653 38999999999999999887543321 2445555554
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|++.++++|++ +...+++++.++|||||++++.+.
T Consensus 98 -----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 98 -----------SLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp -----------GCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------cCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4555578999999999999998 557999999999999999999875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=135.83 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++.....+|+++|+|+.+++.+++++...+.. ..+.+...++.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~------------- 106 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-----DRVKGITGSMD------------- 106 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTT-------------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChh-------------
Confidence 366799999999999999877666558999999999999999887544331 12444455544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++|++ ...+++++.++|||||.+++.+..
T Consensus 107 ----------~~~~~~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 107 ----------NLPFQNEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp ----------SCSSCTTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ----------hCCCCCCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 5555578999999999999983 578999999999999999998853
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=131.05 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=85.2
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+. ...+.+...++.
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~---------------- 103 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVH---------------- 103 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTT----------------
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHH----------------
Confidence 49999999999999977665233899999999999999988754332 123445555554
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.++.++++||+|++..+++|+. +...+++++.++|||||.+++.+...
T Consensus 104 -------~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 104 -------NIPIEDNYADLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp -------BCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred -------HCCCCcccccEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 4445578999999999999997 67899999999999999999987543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-16 Score=139.04 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=84.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++...+. ...+.++..++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~-------------- 127 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQ-------------- 127 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGG--------------
T ss_pred CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHH--------------
Confidence 4579999999999999976655 44799999999999999998764432 123445555554
Q ss_pred eeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++ ..+++||+|++..+++|++ +...+++++.++|||||.+++...
T Consensus 128 ---------~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 128 ---------DVASHLETPVDLILFHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ---------GTGGGCSSCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------HhhhhcCCCceEEEECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 333 3468999999999999998 568999999999999999999764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=131.03 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=84.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++... .+|+++|+|+.|++.+++++... ..+.+...++.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~------------- 107 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRW--------SHISWAATDIL------------- 107 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTC--------SSEEEEECCTT-------------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccC--------CCeEEEEcchh-------------
Confidence 366899999999999999765554 47999999999999999987532 13455555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ++++||+|+++.+++|+.+ +.+..+++++.++|||||.+++...
T Consensus 108 ----------~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 108 ----------QFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp ----------TCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----------hCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 444 4689999999999999985 4567889999999999999999653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=134.93 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=87.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.+++++...+. ..+.+...++.
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~------------- 79 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAE------------- 79 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTT-------------
T ss_pred CCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEecccc-------------
Confidence 46789999999999999975544 45899999999999999988743221 12344445444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++.++++||+|++..+++|+. +...+++++.++|||||.+++.+...+.
T Consensus 80 ----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 129 (239)
T 1xxl_A 80 ----------SLPFPDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPE 129 (239)
T ss_dssp ----------BCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred ----------cCCCCCCcEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence 5555568999999999999998 6689999999999999999998876543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-16 Score=138.19 Aligned_cols=122 Identities=13% Similarity=0.009 Sum_probs=83.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC-CCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++..++ +|+|+|+|+.|++.|+++...... ...........+. ....+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 134 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK------------SSSGS 134 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE------------ETTSS
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccc------------cCCCc
Confidence 567999999999999997766655 699999999999999876531000 0000000000000 00123
Q ss_pred eeeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|+|.++|+. .+++. .++||+|++..+++|++.++...+++++.++|||||.|++..
T Consensus 135 i~~~~~D~~-~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 135 ISLYCCSIF-DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp EEEEESCTT-TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEECccc-cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 555555554 34333 379999999999999988788899999999999999997543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=129.31 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=81.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..+ ...+++++|+|+.|++.++++.. .+.+...++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 87 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAP-----------EATWVRAWGE-------------- 87 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCT-----------TSEEECCCTT--------------
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcccc--------------
Confidence 5679999999999999864 44379999999999999998751 2344455554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++|++ +...+++++.++|||||.+++....
T Consensus 88 ---------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 88 ---------ALPFPGESFDVVLLFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ---------SCCSCSSCEEEEEEESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------cCCCCCCcEEEEEEcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4544567999999999999998 6689999999999999999998653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=131.95 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=84.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.++++... ..+.+...++.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~-------------- 99 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLD-------------- 99 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGG--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChh--------------
Confidence 5679999999999999977666554899999999999999987642 12445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|++..+++|+. +...+++++.++|+|||.+++...
T Consensus 100 ---------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 100 ---------KLHLPQDSFDLAYSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp ---------GCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------hccCCCCCceEEEEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 4444567999999999999998 678999999999999999999763
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=127.71 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.+++++...+. ..+.+...++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~-------------- 90 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLN-------------- 90 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGG--------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchh--------------
Confidence 5679999999999999976655 44799999999999999988643221 12444455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.++. +++||+|++..+++|++.++...+++++.++|||||.+++.+...
T Consensus 91 ---------~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 91 ---------NLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp ---------GCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ---------hCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 4444 678999999999999998788999999999999999998877544
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=136.01 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=86.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+. ...+.+...++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~------------- 106 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMD------------- 106 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTT-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChh-------------
Confidence 46789999999999999976665333899999999999999998754432 123445555544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++|++ ...+++++.++|||||.+++.+..
T Consensus 107 ----------~~~~~~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 107 ----------DLPFRNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp ----------SCCCCTTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred ----------hCCCCCCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 5555578999999999999983 478999999999999999998764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=129.99 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=87.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++... . .+|+++|+|+.+++.+++++...+. ..+.+...++.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~------------ 98 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEEN------------ 98 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTT------------
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccc------------
Confidence 66799999999999999877665 2 3899999999999999988753322 12444455544
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++.++++||+|++..+++|+. +...+++++.++|+|||.+++.+....
T Consensus 99 -----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 99 -----------KIPLPDNTVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp -----------BCSSCSSCEEEEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred -----------cCCCCCCCeeEEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 4444568899999999999998 668999999999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=136.13 Aligned_cols=109 Identities=16% Similarity=0.014 Sum_probs=86.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.+++++.. ..+.+.+.++.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~-------------- 111 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGL-------------- 111 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTT--------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---------cCceEEECccc--------------
Confidence 668999999999999997766555 799999999999999988731 23455555554
Q ss_pred eeeccCCcCCCCCC-----CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPE-----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-----~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
+.... ...||+|++..+++|+++++...+++++.++|||||.+++.+....++
T Consensus 112 ---------~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 169 (245)
T 3ggd_A 112 ---------VPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI 169 (245)
T ss_dssp ---------CHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH
T ss_pred ---------ccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc
Confidence 21110 124899999999999998888999999999999999999998765543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=136.96 Aligned_cols=137 Identities=20% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc-cccc--cC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE-KNKK--VG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~--~~ 232 (307)
.++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|++++...... .+....+.+.+ +++.... ..+. ..
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~-~d~s~~~~~~~-~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA-YDWTPAVKFAC-ELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTC-CCCHHHHHHHH-HHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCc-ccchHHHHHHH-hcCCCCcchhhHHHHH
Confidence 467899999999998877444555568999999999999999887432100 00000011100 1110000 0000 00
Q ss_pred cccee-eeccCCcCCCCC---CCCceeeEEcchhhhhCC--hhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKVK-IAKKGISADFTP---ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i~-~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~--~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...|+ +.+.|+....+. ..++||+|+++++++|+. .+++..++++++++|||||.|++.+..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 12243 667776653322 256899999999999863 357789999999999999999998643
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=134.57 Aligned_cols=102 Identities=23% Similarity=0.332 Sum_probs=83.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++. .+.+...++.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 103 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP-----------DAVLHHGDMR-------------- 103 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTT--------------
T ss_pred CCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-----------CCEEEECChH--------------
Confidence 4579999999999999976554 4479999999999999998863 2455566655
Q ss_pred eeeccCCcCCCCCCCCceeeEEcch-hhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++. +++||+|++.. +++|+.+ .+...+++++.++|||||.|++....
T Consensus 104 ---------~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 104 ---------DFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp ---------TCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred ---------HCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4444 67999999998 9999965 46789999999999999999996543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=135.29 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++.....+|++||+|+.|++.|+++....+ ..+.++..+.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------~~~~~~~~~a~-------------- 118 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWE-------------- 118 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHH--------------
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------CceEEEeehHH--------------
Confidence 678999999999999997655555689999999999999999875432 22334344332
Q ss_pred eeeccCCcCCCCCCCCceeeEEc-----chhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIWV-----QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~-----~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++ ....++++||.|+. ..+++|.. +...++++++++|||||.|++.+
T Consensus 119 -----~~--~~~~~~~~FD~i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 119 -----DV--APTLPDGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp -----HH--GGGSCTTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred -----hh--cccccccCCceEEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEe
Confidence 00 11224678999873 45666666 77999999999999999998864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-15 Score=126.96 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+..... +++++|+|+.+++.|+++....+ ..+.+...++.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~-------------- 95 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDAR-------------- 95 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTT--------------
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-------CCceEEECchh--------------
Confidence 467999999999999986655544 89999999999999998864321 23445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|+++.++++...++...+++++.++|+|||.+++.+.
T Consensus 96 ---------~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 96 ---------KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp ---------SCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 444446789999999997666666789999999999999999999765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=134.23 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=87.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.... +|+++|+|+.+++.+++++...+. .+.+...++.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~-------------- 177 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-------NISTALYDIN-------------- 177 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-------CEEEEECCGG--------------
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEeccc--------------
Confidence 568999999999999997766644 799999999999999988754321 3455555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.... .++||+|+++.+++|++++++..+++++.+.|+|||.+++...+.
T Consensus 178 ---------~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 178 ---------AANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp ---------GCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ---------cccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 4433 678999999999999998889999999999999999988876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=129.74 Aligned_cols=108 Identities=18% Similarity=0.052 Sum_probs=84.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++. ...+|+++|+|+.+++.|++++...+. ...+.+...++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~-------------- 125 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVF-------------- 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTT--------------
T ss_pred CCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchh--------------
Confidence 346999999999999996544 334799999999999999998754211 122344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+. ..++||+|++..+++|+++++...+++++.++|||||.|++.+..
T Consensus 126 ---------~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 126 ---------TWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ---------TCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ---------cCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 333 356899999999999999888899999999999999999997764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=134.37 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=83.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.+++++.. . ...+.+...++.
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~-~------~~~~~~~~~d~~------------- 96 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAG-V------DRKVQVVQADAR------------- 96 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTT-S------CTTEEEEESCTT-------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhc-c------CCceEEEEcccc-------------
Confidence 36689999999999999976555 45799999999999999988621 1 223445555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++.++++||+|++..+++|++ +...+++++.++|||||.+++.
T Consensus 97 ----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 97 ----------AIPLPDESVHGVIVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ----------SCCSCTTCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------cCCCCCCCeeEEEECCchhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 5555578999999999999998 6689999999999999999987
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=133.70 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+......+|+++|+|+.|++.|+++....+ ..+.++..++.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~-------------- 118 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWE-------------- 118 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHH--------------
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEecCHH--------------
Confidence 678999999999999997644344489999999999999999875321 23445555544
Q ss_pred eeeccCCcCCC--CCCCCceeeEEc-chhh--hhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADF--TPETGRYDVIWV-QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~--~~~~~~fDlIi~-~~~l--~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++ +.++++||+|++ .+.+ +.....+...++++++++|||||+|++.+.
T Consensus 119 ---------~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 119 ---------DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp ---------HHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ---------HhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 33 345689999999 5542 233334567889999999999999998753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=131.69 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=82.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..+..... +|+++|+|+.+++.++++. .+...+..
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~--------------~~~~~d~~-------------- 91 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKF--------------NVVKSDAI-------------- 91 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTS--------------EEECSCHH--------------
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc--------------ceeeccHH--------------
Confidence 568999999999999997666544 6999999999999998652 23344443
Q ss_pred eeeccCCcCCC--CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~--~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++ +.++++||+|++..+++|++++++..+++++.++|||||.+++....
T Consensus 92 ---------~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 92 ---------EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp ---------HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred ---------HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 21 33468999999999999999888899999999999999999997653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=131.04 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=82.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.++++.. .+.+...++.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 93 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----------DATLHQGDMR-------------- 93 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----------TCEEEECCTT--------------
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHH--------------
Confidence 567999999999999997766655 79999999999999998752 2345555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcc-hhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQ-WCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.++. +++||+|+|. .+++|+.+ ++...+++++.++|+|||.+++.+...+
T Consensus 94 ---------~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 94 ---------DFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp ---------TCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred ---------Hccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 4443 5789999964 48999854 5788999999999999999999765443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=137.98 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCceEEEEeccccHHHHHHHH----hcCC-c--EEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLI----RYFN-E--VDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~----~~~~-~--v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
.++.+|||||||+|.++..++. .+.. . ++++|+|+.|++.|++++... +..+ ....+...+.+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~----v~~~~~~~~~~----- 121 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLEN----VKFAWHKETSS----- 121 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT----EEEEEECSCHH-----
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCc----ceEEEEecchh-----
Confidence 3567999999999987754433 2222 2 399999999999999887432 1111 01111122221
Q ss_pred ccccCccceeeeccCCcCCC------CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 228 NKKVGSKKVKIAKKGISADF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~------~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++ ++++++||+|++.++++|++ +...++++++++|||||.|++.+.
T Consensus 122 ------------------~~~~~~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 122 ------------------EYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp ------------------HHHHHHHTTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------------------hhhhhhccccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 11 12367899999999999999 668999999999999999999864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=134.33 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=85.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.|++++...+. ...+.+...++.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~-------------- 124 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSY-------------- 124 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTT--------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCcc--------------
Confidence 6689999999999999876655555899999999999999988754322 112344444443
Q ss_pred eeeccCCcCCCCC-CCCceeeEEcchhhhh--CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP-ETGRYDVIWVQWCIGH--LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~--~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. .+++||+|++..+++| .+.++...+++++.++|||||.|++...
T Consensus 125 ---------~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 125 ---------GRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp ---------TSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------ccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3333 4678999999999988 5556789999999999999999998764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-15 Score=136.18 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=89.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++ ..++.+...++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~------------ 177 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNML------------ 177 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTT------------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChh------------
Confidence 346789999999999999987666455799999999999999998754432 123455555554
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.++.++++||+|++..+++|++ ...+++++.++|||||.+++.+.+..+
T Consensus 178 -----------~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 178 -----------DTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp -----------SCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred -----------cCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 5555568999999999999984 688999999999999999998865443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=135.69 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
....++..++.. .++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|+++....+... ....+.+
T Consensus 44 ~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~ 113 (293)
T 3thr_A 44 EYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEP--AFDKWVI 113 (293)
T ss_dssp HHHHHHHHHHHH-------TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSH--HHHTCEE
T ss_pred HHHHHHHHHhcc-------cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccccc--ccceeeE
Confidence 344555555542 2567999999999999998766655 79999999999999988752211100 0112233
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCC---CCCCceeeEEcc-hhhhhCCh-----hHHHHHHHHHHHcCCCCcE
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGF 287 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fDlIi~~-~~l~~~~~-----~dl~~~l~~l~~~LkpGG~ 287 (307)
...++. .++ +.+++||+|+|. ++++|+.+ ++...++++++++|||||+
T Consensus 114 ~~~d~~-----------------------~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 170 (293)
T 3thr_A 114 EEANWL-----------------------TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170 (293)
T ss_dssp EECCGG-----------------------GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEE
T ss_pred eecChh-----------------------hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeE
Confidence 333332 222 346799999998 89999986 4589999999999999999
Q ss_pred EEEEec
Q 021836 288 FVLKEN 293 (307)
Q Consensus 288 lii~e~ 293 (307)
|++...
T Consensus 171 l~~~~~ 176 (293)
T 3thr_A 171 LVIDHR 176 (293)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 998753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=134.65 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++... .+|+++|+|+.|++.|++++... +...++.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~------------~v~~~~~------------- 97 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR------------CVTIDLL------------- 97 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS------------CCEEEEC-------------
T ss_pred CCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc------------cceeeee-------------
Confidence 467899999999999999766554 47999999999999999987542 1122221
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ... ..+++||+|+++.+++|+..++...+++++.++| |||.++++-.
T Consensus 98 ----~~~~--~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 98 ----DITA--EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp ----CTTS--CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ----eccc--ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 0100 000 1146899999999999999888899999999999 9999998754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-15 Score=133.11 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=85.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+ .++.+...|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~----------- 82 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDAT----------- 82 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------SEEEEEESCTT-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcchh-----------
Confidence 4678999999999999997655543 379999999999999999875421 13445555554
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++ +++||+|++..+++|++ +...++++++++|||||++++.+..
T Consensus 83 ------------~~~~-~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 ------------EIEL-NDKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ------------TCCC-SSCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------------hcCc-CCCeeEEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4544 46899999999999998 5689999999999999999998764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=130.75 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=83.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++.. .+.+...++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~------------ 88 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP-----------NTNFGKADLA------------ 88 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST-----------TSEEEECCTT------------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC-----------CcEEEECChh------------
Confidence 366899999999999999776664 3479999999999999988731 2445556555
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++ .+++||+|+++.+++|+. +...+++++.++|||||.|++...
T Consensus 89 -----------~~~-~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 89 -----------TWK-PAQKADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp -----------TCC-CSSCEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -----------hcC-ccCCcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 444 467899999999999998 678999999999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-15 Score=133.31 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=83.0
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|.++..++... .+|+++|+|+.|++.|++++...+.. ....+.+++.++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~--------------- 143 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPAD---VRDRCTLVQGDMS--------------- 143 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHH---HHTTEEEEECBTT---------------
T ss_pred CCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccc---cccceEEEeCchh---------------
Confidence 4599999999999999766654 46999999999999999987543210 0023445555554
Q ss_pred eeccCCcCCCCCCCCceeeEEcc-hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++ +++||+|++. .+++|++++++..+++++.++|||||.|++...
T Consensus 144 --------~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 144 --------AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp --------BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 4444 6799999865 668888877789999999999999999999764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=125.98 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=86.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++...+..+. ....+.+...++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~-------------- 93 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQK-TGGKAEFKVENAS-------------- 93 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSS-SSCEEEEEECCTT--------------
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccc-cCcceEEEEeccc--------------
Confidence 5689999999999999977666 44799999999999999998865433210 0112344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-HHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++..+++||+|++..+++|+.++ ....+++++.++|||||.+++.+..
T Consensus 94 ---------~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 94 ---------SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp ---------SCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ---------ccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 444457899999999999999753 3558999999999999999998753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=138.00 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|++++...+.......-.+.|...++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~-------------- 113 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR-------------- 113 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT--------------
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcc--------------
Confidence 467999999999986665666665689999999999999998874321100000001223333331
Q ss_pred eeeccCCc-CCC--CCCCCceeeEEcchhhhhC-ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGIS-ADF--TPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~-~~~--~~~~~~fDlIi~~~~l~~~-~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.|.. ..+ ..++++||+|+|.+++||+ +.++...++++++++|||||+|++...
T Consensus 114 ----~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 114 ----SDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp ----SSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----cchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 0000 011 1235799999999999885 334678999999999999999998754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=131.54 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=82.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++. ...+|+++|+|+.|++.++++.. .+.+...++.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 110 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP-----------HLHFDVADAR-------------- 110 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT-----------TSCEEECCTT--------------
T ss_pred CCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC-----------CCEEEECChh--------------
Confidence 567999999999999997666 34479999999999999988752 2445566655
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++ +++||+|++..+++|+. +...+++++.++|||||.+++....
T Consensus 111 ---------~~~~-~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 111 ---------NFRV-DKPLDAVFSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp ---------TCCC-SSCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------hCCc-CCCcCEEEEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4544 57899999999999998 6689999999999999999997653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-15 Score=133.40 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|++++..... ....+.+...++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~v~~~~~d~~------------ 99 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD----TYKNVSFKISSSD------------ 99 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTT------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC----CCCceEEEEcCHH------------
Confidence 6789999999999999987653 345899999999999999988643200 0223455555554
Q ss_pred ceeeeccCCcCCCCCCC------CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFTPET------GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~------~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.++... ++||+|++..+++|+ +...+++++.++|||||.|++.+
T Consensus 100 -----------~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 100 -----------DFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp -----------CCGGGCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------hCCccccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 333333 799999999999999 55899999999999999999843
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-15 Score=125.41 Aligned_cols=104 Identities=24% Similarity=0.229 Sum_probs=79.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++ +|||+|||+|..+..++... .+|+++|+|+.+++.++++....+ ..+.+...++.
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~-------------- 86 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKG-------VKITTVQSNLA-------------- 86 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHT-------CCEEEECCBTT--------------
T ss_pred CC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcChh--------------
Confidence 45 99999999999999765553 479999999999999998864321 12344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+.++++||+|++.. .|+..++...+++++.++|||||.+++....
T Consensus 87 ---------~~~~~~~~fD~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 87 ---------DFDIVADAWEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp ---------TBSCCTTTCSEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred ---------hcCCCcCCccEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3444467899999954 4666668899999999999999999998754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=132.29 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=80.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..+... ..+|+|+|+|+.|++.++++. .+.+...++.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~------------- 86 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP------------QVEWFTGYAE------------- 86 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT------------TEEEECCCTT-------------
T ss_pred CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc------------CCEEEECchh-------------
Confidence 36789999999999999976653 347999999999998775442 2445555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++|+. +...++++++++|| ||.+++.+..
T Consensus 87 ----------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 87 ----------NLALPDKSVDGVISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp ----------SCCSCTTCBSEEEEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred ----------hCCCCCCCEeEEEEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 5555678999999999999997 67999999999999 9988887753
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=122.26 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=81.9
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 218 (307)
..+...++...+ .++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++++...+. ..+.+..
T Consensus 9 ~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~ 76 (185)
T 3mti_A 9 IHMSHDFLAEVL-----DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELIL 76 (185)
T ss_dssp HHHHHHHHHTTC-----CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEE
T ss_pred HHHHHHHHHHhC-----CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEe
Confidence 344444544332 36789999999999999976555 56899999999999999998754322 1234444
Q ss_pred cCcccccccccccCccceeeeccCCcCCCC-CCCCceeeEEcchhhhhC-------ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 219 VPLQGQREKNKKVGSKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 219 ~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~-------~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+.. .+. ..+++||+|+++....+. ...+...+++++.+.|||||.|++
T Consensus 77 ~~~~-----------------------~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 77 DGHE-----------------------NLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp SCGG-----------------------GGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcHH-----------------------HHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 3332 211 125789999987322121 224567889999999999999999
Q ss_pred Eecc
Q 021836 291 KENI 294 (307)
Q Consensus 291 ~e~~ 294 (307)
....
T Consensus 134 ~~~~ 137 (185)
T 3mti_A 134 MIYY 137 (185)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=133.60 Aligned_cols=113 Identities=12% Similarity=0.194 Sum_probs=89.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|..+..++..+.. +++++|+ +.+++.|++++...+. ..++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~-------------------- 232 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIH-------------------- 232 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEE--------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceE--------------------
Confidence 4579999999999999988776654 7999999 9999999998865332 12333
Q ss_pred eeeeccCCcCCC-CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 236 VKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|...|..... +. +++||+|++.+++|++++++...++++++++|||||.|++.|.+.++.
T Consensus 233 --~~~~d~~~~~~~~-p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (363)
T 3dp7_A 233 --GHGANLLDRDVPF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQ 293 (363)
T ss_dssp --EEECCCCSSSCCC-CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSC
T ss_pred --EEEccccccCCCC-CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCc
Confidence 4444443331 22 378999999999999998888899999999999999999999876553
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=133.14 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcc-------------------cccccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPD-------------------MHKATNF 216 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~-------------------~~~~~~~ 216 (307)
++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|++++......+.. ......+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 467999999999999997766643 48999999999999999887543211000 0000000
Q ss_pred eecCcc---c---c---ccc-ccccC-ccceeeeccCCcCCC----CCCCCceeeEEcchhhhhC----ChhHHHHHHHH
Q 021836 217 FCVPLQ---G---Q---REK-NKKVG-SKKVKIAKKGISADF----TPETGRYDVIWVQWCIGHL----TDDDFVSFFKR 277 (307)
Q Consensus 217 ~~~d~~---~---~---~~~-~~~~~-~~~i~~~~~d~~~~~----~~~~~~fDlIi~~~~l~~~----~~~dl~~~l~~ 277 (307)
+..... + . ... ..... ..+|+|.+.|+.... ....++||+|+|..+++|+ .++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 000000 0 0 000 00000 247889888876433 1246799999999998777 56678999999
Q ss_pred HHHcCCCCcEEEEEe
Q 021836 278 AKVGLKPGGFFVLKE 292 (307)
Q Consensus 278 l~~~LkpGG~lii~e 292 (307)
++++|+|||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999854
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=139.20 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCC-----CCCCcccccccceeecCcccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE-----NHMAPDMHKATNFFCVPLQGQREKN 228 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|++++... +.. ....+.+...++.
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~---~~~~v~~~~~d~~------ 152 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP---SRSNVRFLKGFIE------ 152 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSST---TCCCEEEEESCTT------
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccccc---CCCceEEEEccHH------
Confidence 3678999999999999997766542 28999999999999999876321 000 0123444444443
Q ss_pred cccCccceeeeccCCcCCC------CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 229 KKVGSKKVKIAKKGISADF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~~------~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.+ +.++++||+|+++.+++|++ +...+++++.++|||||+|++.+...
T Consensus 153 -----------------~l~~~~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 153 -----------------NLATAEPEGVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp -----------------CGGGCBSCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----------------HhhhcccCCCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 22 44578999999999999998 56899999999999999999987543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=121.33 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=81.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.... +|+++|+++.+++.++++.. .+.+...+ .
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----------~v~~~~~d-~-------------- 69 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD-----------SVITLSDP-K-------------- 69 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT-----------TSEEESSG-G--------------
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC-----------CcEEEeCC-C--------------
Confidence 668999999999999997666554 89999999999999998721 12333322 1
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+ ++++||+|++..+++|+. +...+++++.+.|||||.+++.+.....
T Consensus 70 ---------~~--~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 70 ---------EI--PDNSVDFILFANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp ---------GS--CTTCEEEEEEESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred ---------CC--CCCceEEEEEccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 22 367899999999999998 6689999999999999999998865443
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=131.23 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||+|||+|..+..++..+.. +++++|+ +.+++.|++++...+. . .
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~----------------------~ 219 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-----S----------------------G 219 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----T----------------------T
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-----C----------------------c
Confidence 34679999999999999987776654 7999999 9999999988743221 1 2
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
+|+|...|....+ +.+||+|++.+++||+++++...+++++++.|+|||.|++.|.+.++.
T Consensus 220 ~v~~~~~d~~~~~---p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 280 (332)
T 3i53_A 220 RAQVVVGSFFDPL---PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE 280 (332)
T ss_dssp TEEEEECCTTSCC---CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred CeEEecCCCCCCC---CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence 3445555544232 238999999999999998888999999999999999999999876653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=126.30 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=80.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. .+|+++|+|+.|++.|+++....+ ..+.+...++.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~-------------- 89 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-------RHVDFWVQDMR-------------- 89 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCGG--------------
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-------CceEEEEcChh--------------
Confidence 4579999999999999975544 679999999999999998864321 22445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcch-hhhhC-ChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~-~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++. .++||+|++.. +++|+ +.++...+++++.++|+|||.+++.
T Consensus 90 ---------~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 90 ---------ELEL-PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp ---------GCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------hcCC-CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4433 37899999986 89998 4457889999999999999999883
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=126.37 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=87.0
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 218 (307)
..++..++.... ..++.+|||+|||+|..+..++... .+|+++|+|+.|++.|+++....+ ..+.+..
T Consensus 27 ~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~ 94 (252)
T 1wzn_A 27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERN-------LKIEFLQ 94 (252)
T ss_dssp HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEE
T ss_pred HHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEE
Confidence 455666665322 2356799999999999999766654 479999999999999998874321 1244555
Q ss_pred cCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch-hhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 219 VPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 219 ~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++. .++. .++||+|++.. +++|++.++...+++++.++|+|||.+++.
T Consensus 95 ~d~~-----------------------~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 95 GDVL-----------------------EIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp SCGG-----------------------GCCC-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChh-----------------------hccc-CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 5554 3433 46899999874 566777778899999999999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-14 Score=118.39 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.. ..+++++|+++.+++.++++.. .+.+...++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 99 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP-----------EARWVVGDLS-------------- 99 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTT--------------
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccc--------------
Confidence 5679999999999999976655 4479999999999999998763 1345555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcc-hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+.++++||+|++. .+++|++.++...+++.+.+.|+|||.+++...
T Consensus 100 ---------~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 100 ---------VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp ---------TSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444446789999998 788899877889999999999999999998654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=124.99 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=81.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.. ..+++++|+|+.|++.++++....+ ..+.+...++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~-------------- 94 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQDIS-------------- 94 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCCGG--------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcC-------CCeEEEecccc--------------
Confidence 5679999999999999976555 4479999999999999998874321 12445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcch-hhhhCCh-hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~-~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++.+ ++||+|++.. +++|+.+ ++...+++++.++|||||.+++.
T Consensus 95 ---------~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 95 ---------NLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp ---------GCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---------cCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44433 7899999998 9999943 57899999999999999999984
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=131.36 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=85.4
Q ss_pred CCceEEEEeccccHHHHHHH-HhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLL-IRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll-~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++ .... .+|+++|+|+.+++.|++++...+. ...+.++..++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~------------ 180 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAW------------ 180 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGG------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchh------------
Confidence 67899999999999998653 2232 3899999999999999999865433 223455555554
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH-HHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-l~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.++++ ++||+|+++.+++|++++. ...+++++.++|||||.|++.+...
T Consensus 181 -----------~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 181 -----------KLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp -----------GCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred -----------cCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 45444 8999999999999996443 4568999999999999999987543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=124.81 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=79.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.++++... .+...++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~-------------- 106 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK------------NVVEAKAE-------------- 106 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS------------CEEECCTT--------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcCC------------CEEECcHH--------------
Confidence 5679999999999999976555 44799999999999999988631 14455555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|++..++.|+.. +...+++++.++|||||.+++...
T Consensus 107 ---------~~~~~~~~fD~v~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 107 ---------DLPFPSGAFEAVLALGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp ---------SCCSCTTCEEEEEECSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------HCCCCCCCEEEEEEcchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 45445688999999887666532 478999999999999999998653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=128.62 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=85.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccc-cccc--ccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQR-EKNK--KVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~--~~~ 232 (307)
.++.+|||+|||+|.++..++.....+|+++|+|+.|++.+++++...+... .......+. .+.+... ...+ ..-
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAF-DWSPVVTYV-CDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCC-CCHHHHHHH-HHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccc-cchhhhhhh-hcccccccchHHHHHHh
Confidence 3568999999999999986554444479999999999999998875421000 000000000 0000000 0000 000
Q ss_pred ccce-eeeccCCcCCCCCCC---CceeeEEcchhhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKV-KIAKKGISADFTPET---GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i-~~~~~d~~~~~~~~~---~~fDlIi~~~~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+| ++.+.|+....+..+ ++||+|++.++++|+.. ++...+++++.++|||||.|++.+..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 1124 555555543332233 78999999999995543 27799999999999999999998743
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-14 Score=129.24 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|..+..++..... +++++|++ .+++.|++++...+. .. +
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~----------------------~ 216 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-----AS----------------------R 216 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-----GG----------------------G
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-----Cc----------------------c
Confidence 5689999999999999987766543 89999999 999999988643221 11 2
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
|+|...|.. ..+. ++.||+|++.++++|+++++...+++++.++|+|||.+++.|.+.++
T Consensus 217 v~~~~~d~~-~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 217 YHTIAGSAF-EVDY-GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp EEEEESCTT-TSCC-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred eEEEecccc-cCCC-CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 334444433 2222 33599999999999999888899999999999999999999987654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=129.01 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=85.4
Q ss_pred CCceEEEEeccccH----HHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCcccccc
Q 021836 157 QHLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQRE 226 (307)
Q Consensus 157 ~~~~ILDiGcGtG~----~t~~ll~~~~-----~~v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 226 (307)
++.+|||+|||||. ++..+..... -+|+|+|+|+.|++.|++..... ...+.......+++.......+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 4443333312 27999999999999999864210 00000000000111000000000
Q ss_pred cccccC--ccceeeeccCCcCC-CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 227 KNKKVG--SKKVKIAKKGISAD-FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 227 ~~~~~~--~~~i~~~~~d~~~~-~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
..+..+ +.+|+|.+.|+... ++ ..++||+|+|.++++|++++....+++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 000111 24688999988752 22 247899999999999999888899999999999999999983
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=132.83 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=127.2
Q ss_pred CCceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccccchh--HHHH-----
Q 021836 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKT--QWYR----- 107 (307)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~--~~~~----- 107 (307)
....-++.+|+.++.++...+.+...- +....+...|....| ..++.++....... .....+.+ .++.
T Consensus 76 ~~~~~~~~~pk~~~~~~~~l~~~~~~~--~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 150 (343)
T 2pjd_A 76 DCDTLIYYWPKNKPEAQFQLMNLLSLL--PVGTDIFVVGENRSG--VRSAEQMLADYAPL-NKVDSARRCGLYFGRLEKQ 150 (343)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHTTS--CTTCEEEEEEEGGGT--GGGHHHHHTTTSCC-EEECCCTTEEEEEEECCSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHhC--CCCCEEEEEEecCCC--HHhHHHHHHHhcCc-chhhhhhcceeEEeecccC
Confidence 456779999999999999888766632 224566677777777 55666666543211 00000000 0000
Q ss_pred ---HHHhhcccccc---cccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC
Q 021836 108 ---EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (307)
Q Consensus 108 ---~~~~yW~~~~~---~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~ 181 (307)
....||..... .+...-+.| ..........++...+. ..++.+|||+|||+|.++..++.....
T Consensus 151 ~~~~~~~~~~~y~~~~~~~~~~~gvf---~~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~~~~la~~~~~ 220 (343)
T 2pjd_A 151 PVFDAEKFWGEYSVDGLTVKTLPGVF---SRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSVAFARHSPK 220 (343)
T ss_dssp CCCCGGGGCEEEEETTEEEEECTTCT---TSSSCCHHHHHHHHHSC-------TTCCSBCCBTTCTTSHHHHHHHHHCTT
T ss_pred CCCCchhhcceeeccceEEEecCCcc---CCCCCcHHHHHHHHhcC-------cCCCCeEEEecCccCHHHHHHHHHCCC
Confidence 01123332111 011011111 11112222233333321 124568999999999999987766654
Q ss_pred -cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc
Q 021836 182 -EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ 260 (307)
Q Consensus 182 -~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~ 260 (307)
+|+++|+|+.|++.+++++...+. ...+...+.. .. .+++||+|+++
T Consensus 221 ~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~~-----------------------~~--~~~~fD~Iv~~ 268 (343)
T 2pjd_A 221 IRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNVF-----------------------SE--VKGRFDMIISN 268 (343)
T ss_dssp CBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTT-----------------------TT--CCSCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEcccc-----------------------cc--ccCCeeEEEEC
Confidence 899999999999999988754322 1223333332 22 25789999999
Q ss_pred hhhhhC---ChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 261 WCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 261 ~~l~~~---~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++|+. ...+...+++++.+.|||||.++++.+.
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 888652 3346789999999999999999998763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=124.19 Aligned_cols=135 Identities=15% Similarity=0.088 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccc---cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGI---GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGt---G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
.+.++..++..+.. .....+|||||||+ |.++..+..... .+|+++|+|+.|++.|++++.. ...
T Consensus 61 ~~~~~~~~~~~l~~---~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~ 129 (274)
T 2qe6_A 61 NRKVLVRGVRFLAG---EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPN 129 (274)
T ss_dssp HHHHHHHHHHHHHT---TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTT
T ss_pred HhHHHHHHHHHHhh---ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCC
Confidence 34555555443221 11346899999999 988764433333 3899999999999999998742 123
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.++..|+...+.... ..+....+ +.++||+|++..++||+++++...++++++++|+|||+|++.+.
T Consensus 130 v~~~~~D~~~~~~~~~----------~~~~~~~~--d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 130 TAVFTADVRDPEYILN----------HPDVRRMI--DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp EEEEECCTTCHHHHHH----------SHHHHHHC--CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred eEEEEeeCCCchhhhc----------cchhhccC--CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 4555555530000000 00000012 12479999999999999976789999999999999999999886
Q ss_pred cC
Q 021836 294 IA 295 (307)
Q Consensus 294 ~~ 295 (307)
..
T Consensus 198 ~~ 199 (274)
T 2qe6_A 198 VD 199 (274)
T ss_dssp BC
T ss_pred cC
Confidence 54
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=129.60 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcc--cccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||||||+|..+. ++.. ...+|+|+|+|+.|++.|++++......... ....+.+............+....
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56799999999999554 3333 3458999999999999999877532100000 000000000000000000000001
Q ss_pred cceeeeccCCcCCCC-----CCCCceeeEEcchhhhhCChh--HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFT-----PETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-----~~~~~fDlIi~~~~l~~~~~~--dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+++.++|+....+ .++++||+|+++++++|+... +...++++++++|||||.|++.+.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 113444555543232 234679999999999995533 789999999999999999999753
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=129.97 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=87.7
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|||||||+|.++..++..+.. +++++|+ +.+++.+++++...+. ..+ |
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~----------------------v 231 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-----GGR----------------------V 231 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGG----------------------E
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCc----------------------e
Confidence 689999999999999988777654 8999999 8899999987653321 122 3
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
++...|........+++||+|++.+++||+++++...++++++++|+|||.|++.|.+.++.
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD 293 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 34444433222112457999999999999998888999999999999999999999866543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=128.96 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=88.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|.++..++..+.. +++++|+ +.+++.|++++...++ . .+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~----------------------~~ 253 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-----A----------------------DR 253 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----T----------------------TT
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-----C----------------------Cc
Confidence 5689999999999999987777654 7999999 9999999988743321 1 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|+|...|....+ +.+||+|++.+++|++++++...+++++++.|+|||.|++.|.+.++.
T Consensus 254 v~~~~~d~~~~~---p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 313 (369)
T 3gwz_A 254 CEILPGDFFETI---PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDER 313 (369)
T ss_dssp EEEEECCTTTCC---CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSS
T ss_pred eEEeccCCCCCC---CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 445555554222 237999999999999998877899999999999999999999876553
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=122.73 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.++++. ...+...++..
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~~~~~------------- 105 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAG------------AGEVHLASYAQ------------- 105 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHTC------------SSCEEECCHHH-------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHhc------------ccccchhhHHh-------------
Confidence 4589999999999999976555 447999999999999998772 12333444330
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+........++||+|++..+++ .. +...+++++.++|||||+|++.+..
T Consensus 106 ------~~~~~~~~~~~fD~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 106 ------LAEAKVPVGKDYDLICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp ------HHTTCSCCCCCEEEEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------hcccccccCCCccEEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 0001112345699999999987 44 6689999999999999999998753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-14 Score=118.95 Aligned_cols=107 Identities=13% Similarity=0.059 Sum_probs=81.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++...+. ..+.+.+.|+.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~-------------- 103 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVA-------------- 103 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHH--------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHH--------------
Confidence 5679999999999999977776666899999999999999998754322 12445555543
Q ss_pred eeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii~e~ 293 (307)
.+. .+.++||+|+++..+++. .++...+++.+.+ +|+|||.|++...
T Consensus 104 ---------~~~~~~~~~~fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 104 ---------AVVAAGTTSPVDLVLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp ---------HHHHHCCSSCCSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred ---------HHHhhccCCCccEEEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 221 125789999998776553 2478899999999 9999999999654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=119.88 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.. ..+++++|+|+.+++.++++.. .+...++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~d~~-------------- 83 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD-------------HVVLGDIE-------------- 83 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSS-------------EEEESCTT--------------
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC-------------cEEEcchh--------------
Confidence 5689999999999999976655 4689999999999999987642 23444443
Q ss_pred eeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. .+.++++||+|++..+++|+. +...+++++.+.|+|||.+++...
T Consensus 84 ---------~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 84 ---------TMDMPYEEEQFDCVIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ---------TCCCCSCTTCEEEEEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred ---------hcCCCCCCCccCEEEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 233457899999999999998 558999999999999999999764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=123.88 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=83.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHH------HHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~------~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
.++.+|||||||+|.++..++... . .+|+++|+|+. |++.|++++...+. ...+.+...+ .
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d-~----- 110 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNT-N----- 110 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSC-C-----
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECC-h-----
Confidence 367899999999999999877664 3 48999999997 99999988754322 1223333333 0
Q ss_pred ccccCccceeeeccCCc-CCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 228 NKKVGSKKVKIAKKGIS-ADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~-~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.. ..++.++++||+|++..+++|++++ ..+++.+..+++|||.+++.+....
T Consensus 111 ---------------~~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 111 ---------------LSDDLGPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp ---------------TTTCCGGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred ---------------hhhccCCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCC
Confidence 11 1223346789999999999999854 5678888888888999999886543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=127.72 Aligned_cols=215 Identities=15% Similarity=0.134 Sum_probs=126.7
Q ss_pred CceeEEeechhhHHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCccccccchhHHHHHHHhhccc
Q 021836 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEG 115 (307)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~yW~~ 115 (307)
...-++.+|+.++.++...+.....-. ....+++.|.+..| ..+..++..+..+.....-.. ++...||..
T Consensus 101 ~~~v~~~lpk~~~~l~~~L~~l~~~l~--~~~~i~~~g~~~~~--~~~~~~~l~~~~~~~~~~~a~-----~~~~~~~~~ 171 (375)
T 4dcm_A 101 PGVVLIKVPKTLALLEQQLRALRKVVT--SDTRIIAGAKARDI--HTSTLELFEKVLGPTTTTLAW-----KKARLINCT 171 (375)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHTTCC--TTSEEEEEEEGGGC--CHHHHHHHHHHTCCEEECCCB-----TTEEEEEEC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhhCC--CCCEEEEEecccch--HHHHHHHHHhhcCccchhhhh-----ceeEEEEEe
Confidence 345688899999999888887665321 24567777777777 456777777665431110000 001122321
Q ss_pred ccc----------cc--c----ccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc
Q 021836 116 VEA----------SV--D----GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY 179 (307)
Q Consensus 116 ~~~----------~~--~----~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~ 179 (307)
... .+ . .+...-+.+....+.....++-..++ ..++.+|||+|||+|.++..++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~Fs~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~s~~la~~~ 244 (375)
T 4dcm_A 172 FNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLP-------ENLEGEIVDLGCGNGVIGLTLLDKN 244 (375)
T ss_dssp CCCCCCCCCCSCEEEEETTTTEEEEECTTCTTCSSCCHHHHHHHHTCC-------CSCCSEEEEETCTTCHHHHHHHHHC
T ss_pred CCCCCCCCCCCceEEEecCCceEEEeCCCcccCCcccHHHHHHHHhCc-------ccCCCeEEEEeCcchHHHHHHHHHC
Confidence 100 00 0 00000011112122222233322222 2245799999999999999877665
Q ss_pred C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEE
Q 021836 180 F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIW 258 (307)
Q Consensus 180 ~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi 258 (307)
. .+|+++|+|+.|++.+++++...+..+ ..+++|...|....+ ++++||+|+
T Consensus 245 p~~~V~gvD~s~~al~~Ar~n~~~ngl~~-------------------------~~~v~~~~~D~~~~~--~~~~fD~Ii 297 (375)
T 4dcm_A 245 PQAKVVFVDESPMAVASSRLNVETNMPEA-------------------------LDRCEFMINNALSGV--EPFRFNAVL 297 (375)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHCGGG-------------------------GGGEEEEECSTTTTC--CTTCEEEEE
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHcCCCc-------------------------CceEEEEechhhccC--CCCCeeEEE
Confidence 3 489999999999999999875432210 012334444444333 357899999
Q ss_pred cchhhhh---CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 259 VQWCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 259 ~~~~l~~---~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++..+++ +.+.....+++.+.+.|||||.++++.|
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 9988765 3333456889999999999999999765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=126.07 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++....+.. .. .....++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~-----------------~~~~~~~ 92 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR----RD-----------------SEYIFSA 92 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS----SC-----------------C-CCCEE
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc----cc-----------------ccccceE
Confidence 56799999999999999776655558999999999999999876421000 00 0001123
Q ss_pred eeeccCCcCC-----CCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISAD-----FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~-----~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.+.|+... +..++++||+|++++++||+ +.++...+++++.++|||||.|++...
T Consensus 93 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 93 EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp EEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3444433222 11124589999999999997 435678999999999999999998754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-14 Score=122.11 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=91.1
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
....++..+.... . .++..+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+.. ..++
T Consensus 40 ~~~~~l~~l~~~~-~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~~i 111 (221)
T 3dr5_A 40 MTGQLLTTLAATT-N---GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----PSRV 111 (221)
T ss_dssp HHHHHHHHHHHHS-C---CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC----GGGE
T ss_pred HHHHHHHHHHHhh-C---CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cCcE
Confidence 3455666655421 1 12345999999999999998766543 48999999999999999988654331 0234
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+...+.. ..+. ..+++||+|++... ..+...+++.+.++|||||+|++ +|
T Consensus 112 ~~~~gda~----------------------~~l~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~-dn 163 (221)
T 3dr5_A 112 RFLLSRPL----------------------DVMSRLANDSYQLVFGQVS-----PMDLKALVDAAWPLLRRGGALVL-AD 163 (221)
T ss_dssp EEECSCHH----------------------HHGGGSCTTCEEEEEECCC-----TTTHHHHHHHHHHHEEEEEEEEE-TT
T ss_pred EEEEcCHH----------------------HHHHHhcCCCcCeEEEcCc-----HHHHHHHHHHHHHHcCCCcEEEE-eC
Confidence 44444432 1221 12578999998643 22567789999999999999887 77
Q ss_pred cCCCCcccCCC
Q 021836 294 IARSGTFLLSH 304 (307)
Q Consensus 294 ~~~~~~~~d~~ 304 (307)
+...|.+.|++
T Consensus 164 ~~~~g~v~~~~ 174 (221)
T 3dr5_A 164 ALLDGTIADQT 174 (221)
T ss_dssp TTGGGTCSCSS
T ss_pred CCCCCcCCCCC
Confidence 77777776653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=127.76 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|.++..++..... +++++|+ +.+++.|++++...+.. .+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---------------------------~~ 233 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---------------------------DR 233 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---------------------------TT
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC---------------------------Cc
Confidence 5689999999999999987776644 7999999 99999999887433211 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec--cCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~--~~~ 296 (307)
|+|.+.|....+ +..||+|++.+++||+++++...++++++++|+|||.+++.|. +.+
T Consensus 234 v~~~~~d~~~~~---~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (374)
T 1qzz_A 234 VTVAEGDFFKPL---PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEG 293 (374)
T ss_dssp EEEEECCTTSCC---SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---
T ss_pred eEEEeCCCCCcC---CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcC
Confidence 344444443323 2349999999999999987778999999999999999999998 654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=114.88 Aligned_cols=109 Identities=12% Similarity=-0.000 Sum_probs=79.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+. ...+.+...++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~------------ 84 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQ------------ 84 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGG------------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHH------------
Confidence 668999999999999997766632 3899999999999999998754322 123444444443
Q ss_pred ceeeeccCCcCCCC-CCCCceeeEEcchhhh-------hCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFT-PETGRYDVIWVQWCIG-------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~-------~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. ..+++||+|+++..+. .....+...+++++.++|||||.+++...
T Consensus 85 -----------~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 85 -----------NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp -----------GGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -----------HHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 222 2357899999876541 11122456799999999999999999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=126.34 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||+|||+|.++..++..... +++++|+ +.+++.+++++...+.. .++.+...|+.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------ 250 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY------------ 250 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-----TTEEEEECCTT------------
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-----CCEEEEeCccc------------
Confidence 35689999999999999987776544 7999999 99999999887543221 12344444433
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
..+.+ .+|+|++.+++||+++++...++++++++|||||.|++.|.+.++
T Consensus 251 -----------~~~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 251 -----------KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp -----------TSCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred -----------cCCCC--CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 22322 349999999999999877899999999999999999999976554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=127.87 Aligned_cols=141 Identities=13% Similarity=0.040 Sum_probs=92.7
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
....++..++...- ..++.+|||||||+|.++..++..... +|+|||+|+.+++.|+++..... ....
T Consensus 157 t~~~~i~~il~~l~----l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~fr-------kr~~ 225 (438)
T 3uwp_A 157 TSFDLVAQMIDEIK----MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR-------KWMK 225 (438)
T ss_dssp THHHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHH-------HHHH
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHH-------HHHH
Confidence 33455555555331 347789999999999999976554333 59999999999999987542100 0000
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCC--CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..++ ...+|+|+++|+.. .+..+ ..||+|+++..+ + .+++...|.++.+.|||||.|++.|.
T Consensus 226 --~~Gl----------~~~rVefi~GD~~~-lp~~d~~~~aDVVf~Nn~~-F--~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 226 --WYGK----------KHAEYTLERGDFLS-EEWRERIANTSVIFVNNFA-F--GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp --HHTB----------CCCEEEEEECCTTS-HHHHHHHHTCSEEEECCTT-C--CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred --HhCC----------CCCCeEEEECcccC-CccccccCCccEEEEcccc-c--CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 0000 01235555555432 22111 469999998764 3 24778889999999999999999999
Q ss_pred cCCCCcccCCC
Q 021836 294 IARSGTFLLSH 304 (307)
Q Consensus 294 ~~~~~~~~d~~ 304 (307)
+.++++-++..
T Consensus 290 f~p~d~~i~~r 300 (438)
T 3uwp_A 290 FAPLNFRINSR 300 (438)
T ss_dssp SSCTTCCCCSS
T ss_pred ccCCCCCCCcc
Confidence 98888765544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=114.01 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=77.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+.. ..+ ++..+..
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~-~~~~d~~------------ 85 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-----DRI-AVQQGAP------------ 85 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-----TSE-EEECCTT------------
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-----CCE-EEecchH------------
Confidence 3678999999999999997665543 38999999999999999987654331 122 3333332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..++...++||+|++..+++| ..+++++.+.|||||.+++...
T Consensus 86 ----------~~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 86 ----------RAFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp ----------GGGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred ----------hhhhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 123222378999999998876 5678999999999999998764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=115.80 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+. ..+.+...+..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~------------ 100 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAP------------ 100 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTT------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChh------------
Confidence 4678999999999999997766653 4899999999999999988753321 12334344332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+ ...++||+|++..+++ +...+++++.+.|+|||.+++...
T Consensus 101 ----------~~~-~~~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 101 ----------EGL-DDLPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp ----------TTC-TTSCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ----------hhh-hcCCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 222 2236799999987653 568899999999999999999754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=121.63 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...++. .++.++..+..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------- 132 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-----NQVRIIEGNAL------------- 132 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEEESCGG-------------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECCHH-------------
Confidence 56799999999999999766533 348999999999999999988644321 23444444443
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCCC
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 304 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~~ 304 (307)
..++ ..+++||+|++... ......+++.+.+.|||||+|++ +++...|.+.+++
T Consensus 133 ---------~~~~~~~~~~fD~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~-d~~~~~g~v~~~~ 187 (232)
T 3ntv_A 133 ---------EQFENVNDKVYDMIFIDAA-----KAQSKKFFEIYTPLLKHQGLVIT-DNVLYHGFVSDIG 187 (232)
T ss_dssp ---------GCHHHHTTSCEEEEEEETT-----SSSHHHHHHHHGGGEEEEEEEEE-ECTTGGGGGGCGG
T ss_pred ---------HHHHhhccCCccEEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEE-eeCCcCccccCcc
Confidence 2222 12578999997643 22567899999999999999866 7777777776653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=119.35 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++...+.. ...+.++..|+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~-------------- 114 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSL-------------- 114 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHH--------------
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCHH--------------
Confidence 45799999999999999777777668999999999999999987543320 012344444443
Q ss_pred eeeccCCcCCCCC-CCCc-eeeEEcchhhhhCChhHHHHHHHHH--HHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTP-ETGR-YDVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~-~~~~-fDlIi~~~~l~~~~~~dl~~~l~~l--~~~LkpGG~lii~e~~ 294 (307)
..... .+++ ||+|++...++ .. +...+++.+ .++|+|||.|++..+.
T Consensus 115 --------~~~~~~~~~~~fD~I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 115 --------DFLKQPQNQPHFDVVFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp --------HHTTSCCSSCCEEEEEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred --------HHHHhhccCCCCCEEEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 11111 2468 99999987743 33 667888888 6689999999987654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=118.15 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=89.4
Q ss_pred cchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccc
Q 021836 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (307)
Q Consensus 133 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~ 211 (307)
..++....|...++..+ .++.+|||+|||+|.++..++..... +|+++|+|+.|++.+++++...+..+
T Consensus 31 eRLp~ld~fY~~~~~~l------~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~---- 100 (200)
T 3fzg_A 31 ERVATLNDFYTYVFGNI------KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI---- 100 (200)
T ss_dssp TTGGGHHHHHHHHHHHS------CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS----
T ss_pred HHhHhHHHHHHHHHhhc------CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc----
Confidence 34456667777766533 25789999999999999965444222 89999999999999999986543321
Q ss_pred cccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 212 KATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+.+ .+.. .. .++++||+|++..++|++. +.+..+.++.+.|+|||+||-.
T Consensus 101 -~v~~--~d~~----------------------~~--~~~~~~DvVLa~k~LHlL~--~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 101 -KYRF--LNKE----------------------SD--VYKGTYDVVFLLKMLPVLK--QQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp -EEEE--ECCH----------------------HH--HTTSEEEEEEEETCHHHHH--HTTCCHHHHHHTCEEEEEEEEE
T ss_pred -cEEE--eccc----------------------cc--CCCCCcChhhHhhHHHhhh--hhHHHHHHHHHHhCCCCEEEEe
Confidence 1122 2222 12 2367899999999999993 6677778999999999999988
Q ss_pred e
Q 021836 292 E 292 (307)
Q Consensus 292 e 292 (307)
+
T Consensus 152 p 152 (200)
T 3fzg_A 152 P 152 (200)
T ss_dssp E
T ss_pred C
Confidence 7
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=135.48 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|++++....... ..+..
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk----------------------r~gl~ 778 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE----------------------ACNVK 778 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT----------------------CSSCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh----------------------hcCCC
Confidence 568999999999999997554442 489999999999999988653210000 00112
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+|+|.+.|+. .+++..++||+|++..+++|+.++....+++++.++|||| .+++..
T Consensus 779 nVefiqGDa~-dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 779 SATLYDGSIL-EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEEEEESCTT-SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred ceEEEECchH-hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 3444444443 4555578999999999999999877788999999999999 666655
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-14 Score=122.35 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.++++.. .+.+.+.++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 101 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAP-----------HADVYEWNGK-------------- 101 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCSC--------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCC-----------CceEEEcchh--------------
Confidence 5689999999999999976555 4479999999999999998731 2345555542
Q ss_pred eeeccCCcCCCCCC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
..++.+ +++||+|+++ . +...+++++.++|||||.|+.
T Consensus 102 --------~~~~~~~~~~fD~v~~~------~--~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 102 --------GELPAGLGAPFGLIVSR------R--GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp --------SSCCTTCCCCEEEEEEE------S--CCSGGGGGHHHHEEEEEEEEE
T ss_pred --------hccCCcCCCCEEEEEeC------C--CHHHHHHHHHHHcCCCcEEEE
Confidence 245445 6899999987 1 456788999999999999983
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=126.71 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=85.3
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
.+|||+|||+|..+..++..... +++++|+ +.+++.+++++...+. . .+|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~----------------------~~v~ 220 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-----G----------------------ERVS 220 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-----T----------------------TSEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-----C----------------------CcEE
Confidence 79999999999999987776544 7999999 9999999987632110 1 1244
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
+...|.... . +++||+|++.+++||+++++...+++++++.|+|||.+++.|.+.++
T Consensus 221 ~~~~d~~~~--~-~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 221 LVGGDMLQE--V-PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp EEESCTTTC--C-CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred EecCCCCCC--C-CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 455554332 2 36799999999999999887789999999999999999999987654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=122.95 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=77.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+|||||||+|.++..++++.. .+|+++|+|+.|++.|++++...+. .++.+.+.+..
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~----------- 182 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDET----------- 182 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGG-----------
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchh-----------
Confidence 45789999999999987754555543 4899999999999999998754322 12344444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++ +++||+|++... .. +...+++++.++|||||.|++.+.
T Consensus 183 ------------~l~--d~~FDvV~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 183 ------------VID--GLEFDVLMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ------------GGG--GCCCSEEEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ------------hCC--CCCcCEEEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 342 578999998654 33 678999999999999999999763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=116.31 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=77.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.|++++...+.. .+.+...+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~------~v~~~~~d~~------------- 135 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH------NVSTRHGDGW------------- 135 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC------SEEEEESCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC------ceEEEECCcc-------------
Confidence 46789999999999999976555 568999999999999999987543321 2344444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...+..++||+|++..+++|+.+ .+.+.|||||.|++.-..
T Consensus 136 ----------~~~~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 136 ----------QGWQARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ----------GCCGGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ----------cCCccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 22223578999999999988883 478999999999997553
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-13 Score=118.26 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++. .++.+...+..
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~v~~~~~d~~------------ 125 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-----QRVTLREGPAL------------ 125 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEEESCHH------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCHH------------
Confidence 567999999999999997665543 38999999999999999988654331 23445555443
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
..++ ...++||+|++... ..+...+++.+.++|||||+|++ +++...|.+.++
T Consensus 126 ----------~~l~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~-~~~~~~g~v~~~ 180 (248)
T 3tfw_A 126 ----------QSLESLGECPAFDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIG-DNVVRDGEVVNP 180 (248)
T ss_dssp ----------HHHHTCCSCCCCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEE-ECCSGGGGGGCT
T ss_pred ----------HHHHhcCCCCCeEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEE-eCCCcCCcccCc
Confidence 1111 12358999998543 33567899999999999998876 676666666654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-14 Score=132.81 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee-ecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||||||+|.++..+..... +|+|+|+|+.|++.|+++.. .....++ ..+..
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~---------~~~~~~~~~~~~~------------ 163 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI---------RVRTDFFEKATAD------------ 163 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC---------CEECSCCSHHHHH------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC---------CcceeeechhhHh------------
Confidence 4678999999999999997665544 79999999999999987621 0111111 11111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.++.++++||+|++.++++|++ +...++++++++|||||+|++...
T Consensus 164 -----------~l~~~~~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 164 -----------DVRRTEGPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp -----------HHHHHHCCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------hcccCCCCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2222357899999999999998 679999999999999999999653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=127.51 Aligned_cols=220 Identities=20% Similarity=0.198 Sum_probs=129.7
Q ss_pred ceeEEeechhh--HHHHHHHhhhccCCCCCCCCceeeccccCCCccccCHHHHHHHhhcCcc--ccccchh-HHHH----
Q 021836 37 TLHLLHVGRRK--EKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDG--EQQEKKT-QWYR---- 107 (307)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~--~~~~~~~-~~~~---- 107 (307)
.+-++.+|+.| ..++.+.+.+...- +..+.+.+.|...+| ++++...-+..+.... .+..+.. .|+.
T Consensus 103 d~v~~~~Pk~k~~~~~~~~l~~~~~~l--~~g~~i~~~g~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 178 (381)
T 3dmg_A 103 DLVVLALPAGRGTAYVQASLVAAARAL--RMGGRLYLAGDKNKG--FERYFKEARALLGYGVVVRREGPYRVALLEKEKE 178 (381)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHHHHHE--EEEEEEEEEEEGGGT--HHHHHHHHHHHHSCEEEEEEETTEEEEEEECCSC
T ss_pred CEEEEECCcchhHHHHHHHHHHHHHhC--CCCCEEEEEEccHHH--HHHHHHHHHhhhccccccccccCcEEEEEEccCC
Confidence 44577899766 45677776544311 125677889988888 5666666554433210 0001110 1110
Q ss_pred --HHHhhcccccccccc----cccCCCCCcccch-hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 108 --EGISYWEGVEASVDG----VLGGFGNVNEVDI-KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 108 --~~~~yW~~~~~~~~~----~~~~y~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
.....|......+.+ +...-+.+..... ..++.++..+.. .... ...++.+|||+|||+|.++..++...
T Consensus 179 ~p~~~~~w~~~~~~~~g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~-~l~~-~~~~~~~VLDlGcG~G~~~~~la~~g- 255 (381)
T 3dmg_A 179 APPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQE-RLGP-EGVRGRQVLDLGAGYGALTLPLARMG- 255 (381)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEECTTCTTTTSCCHHHHHHHHHHHH-HHCT-TTTTTCEEEEETCTTSTTHHHHHHTT-
T ss_pred CCCCccccceeeEEecCceEEEEeCCCceeCCCCCHHHHHHHHHHHH-hhcc-cCCCCCEEEEEeeeCCHHHHHHHHcC-
Confidence 112445433222111 0000001111111 233344444433 2110 01256799999999999999776654
Q ss_pred CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc
Q 021836 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ 260 (307)
Q Consensus 181 ~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~ 260 (307)
.+|+++|+|+.+++.|++++...+. .+.++..|+. ....+.++||+|+++
T Consensus 256 ~~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~-----------------------~~~~~~~~fD~Ii~n 305 (381)
T 3dmg_A 256 AEVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVD-----------------------EALTEEARFDIIVTN 305 (381)
T ss_dssp CEEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTT-----------------------TTSCTTCCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchh-----------------------hccccCCCeEEEEEC
Confidence 4899999999999999998754322 1445555544 343335799999999
Q ss_pred hhhhh---CChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 261 WCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 261 ~~l~~---~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+++ ....+...+++++.+.|||||.++++.|
T Consensus 306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 88877 3344678999999999999999999865
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=112.95 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=75.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+.. ..+.+...++.
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~v~~~~~d~~------------- 114 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-----PRMRAVQGTAP------------- 114 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCTT-------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCEEEEeCchh-------------
Confidence 36789999999999999976665 558999999999999999887544321 12344444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ...+||+|++...+ +.. +++++.+.|||||.|++...
T Consensus 115 ---------~~~~-~~~~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 115 ---------AALA-DLPLPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp ---------GGGT-TSCCCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred ---------hhcc-cCCCCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 2222 23579999987643 335 89999999999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=116.16 Aligned_cols=106 Identities=21% Similarity=0.144 Sum_probs=76.3
Q ss_pred CCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+||| +|.++..++.....+|+++|+|+.+++.|++++...+. .+.+...+..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~------------- 114 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGG------------- 114 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSC-------------
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCch-------------
Confidence 67899999999 99999976655455899999999999999988754321 2344444432
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-----------------hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-----------------DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-----------------~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.....++++||+|+++..+++..+ .....+++.+.+.|||||.+++.
T Consensus 115 ---------~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 115 ---------IIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp ---------SSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---------hhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 111223578999999866544332 12478999999999999999985
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=124.37 Aligned_cols=107 Identities=23% Similarity=0.344 Sum_probs=84.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|.++..++..... +++++|+ +.+++.|++++...+. . .+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~----------------------~~ 234 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----S----------------------DR 234 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----T----------------------TT
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-----C----------------------Cc
Confidence 5679999999999999987776644 7999999 9999999988743322 1 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
|+|...|....+ +..||+|++.+++||+++++...+++++.++|+|||.+++.|.+
T Consensus 235 v~~~~~d~~~~~---~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 235 VDVVEGDFFEPL---PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEECCTTSCC---SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eEEEeCCCCCCC---CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 344444443323 23599999999999999877789999999999999999999987
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=119.29 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=77.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|.++..++..... +|+|+|+|+.|++.|++++...+.. ++.++..|+.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~------nv~~~~~Da~------------- 94 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS------NLRVMCHDAV------------- 94 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS------SEEEECSCHH-------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC------cEEEEECCHH-------------
Confidence 4568999999999999987666544 7999999999999999887544322 2445555443
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHH------HHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDF------VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl------~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. .++++||.|++.+...+...... ..+++.+.++|||||.|++..+
T Consensus 95 ---------~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 95 ---------EVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp ---------HHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred ---------HHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 1111 24689999998754322221111 2599999999999999998654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=112.72 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...+..+ .++.+...++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~----~~~~~~~~d~~-------------- 112 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN----YDIRVVHSDLY-------------- 112 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT----SCEEEEECSTT--------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCc----cceEEEECchh--------------
Confidence 6679999999999999976555 5589999999999999998875332210 01333344333
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
... ..++||+|+++.++++ ...+...+++++.+.|+|||.+++....
T Consensus 113 --------~~~--~~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 113 --------ENV--KDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp --------TTC--TTSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred --------ccc--ccCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 222 3578999999887755 2346789999999999999999997653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=114.71 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+......+|+++|+|+.+++.|++++...+.. .+.+...++.
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~-------------- 119 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY------DIALQKTSLL-------------- 119 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC------CCEEEESSTT--------------
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------ceEEEecccc--------------
Confidence 56899999999999999755443448999999999999999987543221 1344444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. .+++||+|+++..+++ +..+++++.++|+|||.+++.+.
T Consensus 120 ---------~~--~~~~fD~i~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 120 ---------AD--VDGKFDLIVANILAEI-----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp ---------TT--CCSCEEEEEEESCHHH-----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred ---------cc--CCCCceEEEECCcHHH-----HHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2578999999887654 57889999999999999999754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-13 Score=117.04 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=76.6
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+.+|||+|||+|.++..++.. +++|+|+.+++.++++ .+.+...++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~--------------- 94 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAE--------------- 94 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTT---------------
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEcccc---------------
Confidence 579999999999999864332 9999999999999876 1334455554
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..+++|++ +...+++++.++|+|||.+++.+..
T Consensus 95 --------~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 95 --------NLPLKDESFDFALMVTTICFVD--DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp --------BCCSCTTCEEEEEEESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------cCCCCCCCeeEEEEcchHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 4444567899999999999998 5689999999999999999997653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-13 Score=128.10 Aligned_cols=108 Identities=21% Similarity=0.201 Sum_probs=82.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++..+..+|+++|+| .|++.|++++...++. ..+.++..++.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------- 122 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-----HIVEVIEGSVE------------- 122 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-----TTEEEEESCGG-------------
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-----CeEEEEECchh-------------
Confidence 3678999999999999997766666589999999 9999999887654332 23455555555
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++..+ ++||+|++.+..+++.. ..+..+++.+.+.|||||+|++.+.
T Consensus 123 ----------~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 123 ----------DISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp ----------GCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred ----------hcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 44443 78999999765444432 3578899999999999999987543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=117.32 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHh--c-CCcEEEEeCCHHHHHHHHHHhCCC---CCCCcccccc
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--Y-FNEVDLLEPVSHFLDAARESLAPE---NHMAPDMHKA 213 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~--~-~~~v~~vD~s~~~l~~A~~~~~~~---~~~~~~~~~~ 213 (307)
.++..++.... ..++.+|||+|||+|.++..++.. . ..+|+|+|+|+.+++.|++++... +..+......
T Consensus 38 ~l~~~~l~~~~----~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~ 113 (250)
T 1o9g_A 38 EIFQRALARLP----GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 113 (250)
T ss_dssp HHHHHHHHTSS----CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhh
Confidence 45555554321 225679999999999999976655 2 237999999999999999876432 1100000000
Q ss_pred cceeecCcccccccccc-cCcccee-------------eeccCCcCCCCC----CCCceeeEEcchhhhhCCh-------
Q 021836 214 TNFFCVPLQGQREKNKK-VGSKKVK-------------IAKKGISADFTP----ETGRYDVIWVQWCIGHLTD------- 268 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~-~~~~~i~-------------~~~~d~~~~~~~----~~~~fDlIi~~~~l~~~~~------- 268 (307)
..++...- ...... ....+|+ |.+.|+...... ..++||+|+++..+++...
T Consensus 114 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~ 190 (250)
T 1o9g_A 114 EQSERFGK---PSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPG 190 (250)
T ss_dssp HHHHHHCC---HHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCH
T ss_pred hhhhhccc---ccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccc
Confidence 00000000 000000 0011133 555555432210 2348999999877666542
Q ss_pred hHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 269 DDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 269 ~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+....+++++.++|+|||+++++.+.
T Consensus 191 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 191 QPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred cHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 45678999999999999999997663
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-13 Score=115.06 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +++|+|+|+.+++.|++++...+. .++.++..++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~------------- 101 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGS------------- 101 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSS-------------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHH-------------
Confidence 4578999999999999987666543 899999999999999988753322 12344444443
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .++++||+|++++...+.... ....+++.+.++|+|||.|++..
T Consensus 102 ----------~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 102 ----------DLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp ----------CGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----------HHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 232 345789999998653221110 13679999999999999999864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=123.62 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=77.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+ |++.|++++...++ ...+.++..++.
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~-------------- 123 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIE-------------- 123 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHH--------------
Confidence 5679999999999999976665555899999997 99999988754332 123445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcch---hhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQW---CIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~---~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
++..+.++||+|++.+ .+.+.. ++..++..+.+.|||||.++
T Consensus 124 ---------~~~~~~~~~D~Ivs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 124 ---------EVHLPVEKVDVIISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ---------TSCCSCSCEEEEEECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred ---------HhcCCCCcEEEEEEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 4444557999999876 344444 67889999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=123.20 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|..+..++..+.. +++++|+ +.++. +++....+ . ..+
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~----------------~-----------~~~ 233 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD----------------V-----------AGR 233 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG----------------G-----------TTS
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC----------------C-----------CCC
Confidence 5689999999999999988777655 7899999 44444 22221110 0 123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|+|...|....+ + +||+|++.+++||+++++...++++++++|||||.|++.|.+.++.
T Consensus 234 v~~~~~d~~~~~---p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 292 (348)
T 3lst_A 234 WKVVEGDFLREV---P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG 292 (348)
T ss_dssp EEEEECCTTTCC---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSS
T ss_pred eEEEecCCCCCC---C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 556666554222 2 8999999999999998877899999999999999999999876554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=123.05 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
...++..++.. .++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+.. .++.
T Consensus 48 ~~~~l~~l~~~-------~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~ 115 (242)
T 3r3h_A 48 QAQFMQMLIRL-------TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-----HKIK 115 (242)
T ss_dssp HHHHHHHHHHH-------HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-----TTEE
T ss_pred HHHHHHHHHhh-------cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEE
Confidence 34555555542 1457999999999999997665443 38999999999999999887654331 2344
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCC-----CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP-----ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++..+.. ..+.. ..++||+|++... ..+...+++.+.++|+|||+|++
T Consensus 116 ~~~gda~----------------------~~l~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 116 LRLGPAL----------------------DTLHSLLNEGGEHQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp EEESCHH----------------------HHHHHHHHHHCSSCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcCHH----------------------HHHHHHhhccCCCCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEE
Confidence 5454443 11111 1368999998653 33567899999999999999887
Q ss_pred EeccCCCCcccCCC
Q 021836 291 KENIARSGTFLLSH 304 (307)
Q Consensus 291 ~e~~~~~~~~~d~~ 304 (307)
+++...|.+.|+.
T Consensus 169 -d~~~~~g~v~~~~ 181 (242)
T 3r3h_A 169 -DNIFWDGKVIDPN 181 (242)
T ss_dssp -ECSSSSSCSSCTT
T ss_pred -ECCccCCcccCcc
Confidence 6777778776643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=119.45 Aligned_cols=108 Identities=19% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+++.+++.|++++...++. .++.++..|+.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-----~~v~~~~~D~~-------------- 109 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-----DQIEIIEYDLK-------------- 109 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-----TTEEEECSCGG--------------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-----ccEEEEECcHH--------------
Confidence 56899999999999999765554448999999999999999988654331 23445455544
Q ss_pred eeeccCCcCCCC--CCCCceeeEEcchhhhhC------------------ChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFT--PETGRYDVIWVQWCIGHL------------------TDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~------------------~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++. .+.++||+|+++..+... ...++..+++.+.++|||||.|++.-
T Consensus 110 ---------~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 110 ---------KITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp ---------GGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------HhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 221 235789999996443221 11356789999999999999999964
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-13 Score=118.95 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=76.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|++++...+.. .+.++..++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~------------- 130 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE------NTTFCHDRAE------------- 130 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS------SEEEEESCHH-------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CEEEEeccHH-------------
Confidence 567999999999999997654333 37999999999999999887543221 2455555544
Q ss_pred eeeeccCCcCCCCCC---CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~---~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++... .++||+|++..+ . ++..+++.+.++|+|||.|++..
T Consensus 131 ----------~~~~~~~~~~~fD~V~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 131 ----------TFGQRKDVRESYDIVTARAV----A--RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp ----------HHTTCTTTTTCEEEEEEECC----S--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----------HhcccccccCCccEEEEecc----C--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 33321 478999998763 3 57899999999999999999875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=115.64 Aligned_cols=107 Identities=12% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..... +|+|+|+|+.|++.|++++...+.. ++.++..|+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~------nv~~~~~d~~------------- 98 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ------NVKLLNIDAD------------- 98 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS------SEEEECCCGG-------------
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC------CEEEEeCCHH-------------
Confidence 4568999999999999987666543 7999999999999999887543321 2444444443
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .++++||.|++.+...+.... ....+++.+.++|||||.|++..
T Consensus 99 ----------~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 99 ----------TLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ----------GHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ----------HHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 221 235789999876542221110 13678999999999999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-13 Score=119.07 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=83.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...++ ..++.++..+..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~------------ 141 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPAL------------ 141 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHH------------
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHH------------
Confidence 457999999999999998766643 4899999999999999998764332 123444444432
Q ss_pred ceeeeccCCcCCCCC------CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCCC
Q 021836 235 KVKIAKKGISADFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 304 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~------~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~~ 304 (307)
..++. ..++||+|++... ..+...+++.+.++|||||+|++ +|+...|.+.+++
T Consensus 142 ----------~~l~~l~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~-d~~~~~g~v~~~~ 201 (247)
T 1sui_A 142 ----------PVLDEMIKDEKNHGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGY-DNTLWNGSVVAPP 201 (247)
T ss_dssp ----------HHHHHHHHSGGGTTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEE-ECTTGGGGGGCCT
T ss_pred ----------HHHHHHHhccCCCCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEE-ecCCcCCcccCCC
Confidence 11110 1468999998643 23568899999999999999876 6777778777653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=124.75 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=79.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+|+|+|+ |++.|++++...++. ..+.++..++.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~-----~~v~~~~~d~~-------------- 125 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD-----HVVTIIKGKVE-------------- 125 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-----TTEEEEESCTT--------------
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC-----CcEEEEECcHH--------------
Confidence 5689999999999999977666555899999994 999999887654331 23455555555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhC-ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.++.+.++||+|++.++.+++ ....+..++..+.++|||||++++
T Consensus 126 ---------~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 126 ---------EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ---------TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ---------HccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 444456899999997653333 223678899999999999999874
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=116.61 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=77.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCC---CCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+|||+|||+|.++..++..... +|+++|+++.+++.|++++.. .++ ..++.+++.|+.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~---------- 100 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVT---------- 100 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTT----------
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHH----------
Confidence 5679999999999999976666543 899999999999999999865 332 112444444443
Q ss_pred ccceeeeccCCcCCC------CCCCCceeeEEcchhhh----------------hCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 233 SKKVKIAKKGISADF------TPETGRYDVIWVQWCIG----------------HLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~------~~~~~~fDlIi~~~~l~----------------~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
... ....++||+|+++-.+. |.....+..+++.+.++|||||.|++
T Consensus 101 ------------~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 101 ------------LRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp ------------CCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------HHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 220 12357899999973221 22223478899999999999999988
Q ss_pred Ee
Q 021836 291 KE 292 (307)
Q Consensus 291 ~e 292 (307)
.-
T Consensus 169 ~~ 170 (260)
T 2ozv_A 169 IS 170 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=113.68 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=69.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+|||+|||+|..+..+..... .+|+|+|+|+.|++.+.+..... .++.++..+..
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~----------- 115 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDAS----------- 115 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTT-----------
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCC-----------
Confidence 34678999999999999996655432 47999999999887665544211 11223333332
Q ss_pred cceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.. ..+..++||+|++... + ..+...++++++++|||||.|++.-
T Consensus 116 -----------~~~~~~~~~~~fD~V~~~~~--~--~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 116 -----------KPWKYSGIVEKVDLIYQDIA--Q--KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -----------CGGGTTTTCCCEEEEEECCC--S--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------CchhhcccccceeEEEEecc--C--hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11 1112378999998731 1 1244566999999999999999973
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-13 Score=110.69 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=76.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.|++++...+. ...+.++..++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~-------------- 91 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAE-------------- 91 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHH--------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHH--------------
Confidence 5679999999999999987666455899999999999999998865432 123344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHH--HcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~--~~LkpGG~lii~e~ 293 (307)
.......++||+|++...++. .....+++.+. ++|+|||.+++...
T Consensus 92 --------~~~~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 92 --------RAIDCLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp --------HHHHHBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --------HhHHhhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 111112357999999866432 24466677776 99999999998655
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=116.31 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...+.. ..+.+...+..
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------ 126 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-----DKIGLRLSPAK------------ 126 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCHH------------
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeCCHH------------
Confidence 45799999999999999766554 348999999999999999988654332 23445555442
Q ss_pred ceeeeccCCcCCCC-----CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~-----~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
..++ ...++||+|++... ..+...+++.+.++|||||+|++ +++...|.+.++
T Consensus 127 ----------~~~~~~~~~~~~~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~-~~~~~~g~~~~~ 184 (225)
T 3tr6_A 127 ----------DTLAELIHAGQAWQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAV-DNVLRRGQVADE 184 (225)
T ss_dssp ----------HHHHHHHTTTCTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE-ECSSGGGGGGCT
T ss_pred ----------HHHHHhhhccCCCCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-eCCCcCCcccCc
Confidence 1110 01268999996543 33568899999999999999987 555556665554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-13 Score=114.54 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++...+. ..+.+++.|+.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~-------------- 113 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAM-------------- 113 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHH--------------
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHH--------------
Confidence 4579999999999999987777766899999999999999988754322 12344444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii~e~ 293 (307)
...+...++||+|++...++ .. ....+++.+.+ +|+|||+|++..+
T Consensus 114 --------~~~~~~~~~fD~V~~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 114 --------SFLAQKGTPHNIVFVDPPFR-RG--LLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp --------HHHSSCCCCEEEEEECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --------HHHhhcCCCCCEEEECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 12222356899999987643 33 55677888866 5999999998655
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-13 Score=117.65 Aligned_cols=87 Identities=24% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+ ..+|+++|+|+. .+.+...++.
T Consensus 67 ~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~---------------------~~~~~~~d~~-------------- 107 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI----RNPVHCFDLASL---------------------DPRVTVCDMA-------------- 107 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC----CSCEEEEESSCS---------------------STTEEESCTT--------------
T ss_pred CCCeEEEECCcCCHHHHHh----hccEEEEeCCCC---------------------CceEEEeccc--------------
Confidence 5679999999999998854 257999999987 1234455555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++.++++||+|++..++|+ . +...+++++.++|+|||.+++.+..
T Consensus 108 ---------~~~~~~~~fD~v~~~~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 108 ---------QVPLEDESVDVAVFCLSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp ---------SCSCCTTCEEEEEEESCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ---------cCCCCCCCEeEEEEehhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 44445678999999999864 4 6789999999999999999998754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-13 Score=115.40 Aligned_cols=121 Identities=7% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
...++..++.. .++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...+. ..++.
T Consensus 46 ~~~~l~~l~~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~ 113 (221)
T 3u81_A 46 KGQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVT 113 (221)
T ss_dssp HHHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEE
T ss_pred HHHHHHHHHHh-------cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceE
Confidence 34555555542 256799999999999999766543 23899999999999999998754332 12344
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++..+.. +....+. ...++||+|++....++.. +...++..+ ++|||||+|++.+
T Consensus 114 ~~~~d~~-------------------~~l~~~~~~~~~~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 114 ILNGASQ-------------------DLIPQLKKKYDVDTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEESCHH-------------------HHGGGTTTTSCCCCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEECCHH-------------------HHHHHHHHhcCCCceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeC
Confidence 4444432 0000111 0126899999987665544 445677777 9999999998743
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=122.67 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..++.....+|+++|+|+ |++.|++++...++ ...+.++..++.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~-------------- 109 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVE-------------- 109 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchh--------------
Confidence 5679999999999999976665555899999996 88999888754332 123444444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.. +++||+|++...++|+..+.....+..+.+.|||||.+++
T Consensus 110 ---------~~~~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 110 ---------EVSL-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp ---------TCCC-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred ---------hCCC-CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 3333 3689999999888888766778888999999999999985
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=113.84 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=81.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+.. ..+.+...+..
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------ 120 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-----DRVEVRTGLAL------------ 120 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCHH------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCHH------------
Confidence 567999999999999997666543 38999999999999999988654331 23445444443
Q ss_pred ceeeeccCCcCCCC---CC-CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFT---PE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~---~~-~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
..+. .. .++||+|++... ......+++.+.++|+|||+|++ +++...|.+.++
T Consensus 121 ----------~~~~~~~~~~~~~fD~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~-~~~~~~g~~~~~ 177 (223)
T 3duw_A 121 ----------DSLQQIENEKYEPFDFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIG-DNVVREGEVIDN 177 (223)
T ss_dssp ----------HHHHHHHHTTCCCCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEE-ESCSGGGGGGCT
T ss_pred ----------HHHHHHHhcCCCCcCEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEE-eCCCcCCcccCc
Confidence 1111 01 257999998654 23567899999999999997766 666666655544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=112.93 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=76.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. ...+.+...+..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~------------ 118 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPL------------ 118 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHH------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHH------------
Confidence 457999999999999997665543 4899999999999999988753221 122334443332
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCccc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~ 301 (307)
..++..++ ||+|++... ..+...+++.+.+.|||||+|++ +++...|.+.
T Consensus 119 ----------~~~~~~~~-fD~v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~-~~~~~~g~~~ 168 (210)
T 3c3p_A 119 ----------GIAAGQRD-IDILFMDCD-----VFNGADVLERMNRCLAKNALLIA-VNALRRGSVA 168 (210)
T ss_dssp ----------HHHTTCCS-EEEEEEETT-----TSCHHHHHHHHGGGEEEEEEEEE-ESSSSCC---
T ss_pred ----------HHhccCCC-CCEEEEcCC-----hhhhHHHHHHHHHhcCCCeEEEE-ECccccCccc
Confidence 12222245 999998742 22568899999999999999887 5665555544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=113.20 Aligned_cols=99 Identities=21% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...+ .+.+...+..
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--------~v~~~~~d~~------------- 126 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--------NIKLILGDGT------------- 126 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--------SEEEEESCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--------CeEEEECCcc-------------
Confidence 366799999999999999766555 689999999999999999875431 2344444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
...+..++||+|++..+++|+.+ .+.+.|+|||.+++....
T Consensus 127 ----------~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 127 ----------LGYEEEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp ----------GCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred ----------cccccCCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 21123578999999999988873 588899999999998654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=121.37 Aligned_cols=103 Identities=16% Similarity=0.297 Sum_probs=80.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|.++..++..+.. +++++|+ +.+++.+++. .++.
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~-------------------- 249 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------------SGVE-------------------- 249 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEE--------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------------CCCE--------------------
Confidence 5689999999999999988777655 7999999 8888765421 1233
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
|...|....+ +. . |+|++.+++||+++++...+|++++++|||||.|++.|.+.++.
T Consensus 250 --~~~~d~~~~~--p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 306 (368)
T 3reo_A 250 --HLGGDMFDGV--PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPS 306 (368)
T ss_dssp --EEECCTTTCC--CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred --EEecCCCCCC--CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 4444433222 23 3 99999999999998888899999999999999999999876543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=114.20 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=78.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...+.. ..+.+...+..
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~------------- 115 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-----SRIELLFGDAL------------- 115 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCGG-------------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECCHH-------------
Confidence 56799999999999999776654 248999999999999999987543321 12344444433
Q ss_pred eeeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCccc
Q 021836 236 VKIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301 (307)
Q Consensus 236 i~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~ 301 (307)
..++.. +++||+|++..... +...+++.+.+.|+|||.+++. ++...|.+.
T Consensus 116 ---------~~~~~~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~-~~~~~g~~~ 168 (233)
T 2gpy_A 116 ---------QLGEKLELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSD-NVLFRGLVA 168 (233)
T ss_dssp ---------GSHHHHTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEE-TTTC-----
T ss_pred ---------HHHHhcccCCCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEE-cCCcCCccC
Confidence 111111 46899999977642 5688999999999999999885 555555443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-13 Score=111.39 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+. ...+.++..++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~-------------- 104 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDAN-------------- 104 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHH--------------
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHH--------------
Confidence 5679999999999999977665556899999999999999988753321 123444444443
Q ss_pred eeeccCCcCCC---CCCCCceeeEEcchhhhhCChhHHHHHHHHH--HHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~---~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l--~~~LkpGG~lii~e~ 293 (307)
... ....++||+|+++..++. . .....++.+ .++|+|||.+++...
T Consensus 105 --------~~~~~~~~~~~~fD~i~~~~~~~~-~--~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 105 --------RALEQFYEEKLQFDLVLLDPPYAK-Q--EIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp --------HHHHHHHHTTCCEEEEEECCCGGG-C--CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --------HHHHHHHhcCCCCCEEEECCCCCc-h--hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 111 112568999999877542 2 345566666 888999999998654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=115.24 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++ ..++.+...+..
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~------------ 132 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAM------------ 132 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHH------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHH------------
Confidence 457999999999999998776643 4899999999999999998864432 123444444432
Q ss_pred ceeeeccCCcCCCC------CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~------~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
..+. .+.++||+|++... ..+...+++.+.+.|+|||+|++ +|+...|.+.++
T Consensus 133 ----------~~l~~l~~~~~~~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~-d~~~~~g~~~~~ 191 (237)
T 3c3y_A 133 ----------LALDNLLQGQESEGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAY-DNTLWGGTVAQP 191 (237)
T ss_dssp ----------HHHHHHHHSTTCTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE-ECTTGGGGGGSC
T ss_pred ----------HHHHHHHhccCCCCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEE-ecCCcCCccCCC
Confidence 1110 01468999998632 33668899999999999998866 787777777654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=122.01 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|..+..++..+.. +++++|+ +.+++.+++. .++.+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~------------------- 248 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------------PGVTH------------------- 248 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEE-------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------------CCeEE-------------------
Confidence 5689999999999999988777655 7999999 8887665421 12334
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
...|... +.+. . |+|++.+++|++++++...+|++++++|||||.|++.|.+.++.
T Consensus 249 ---~~~D~~~--~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 304 (364)
T 3p9c_A 249 ---VGGDMFK--EVPS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVN 304 (364)
T ss_dssp ---EECCTTT--CCCC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSS
T ss_pred ---EeCCcCC--CCCC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 4444333 2223 3 99999999999998888999999999999999999999876553
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.3e-13 Score=117.72 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|..+..++..... +|+++|+|+.+++.+++++...++. .+.+++.+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~------~v~~~~~d~~------------ 140 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK------GARALWGRAE------------ 140 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS------SEEEEECCHH------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC------ceEEEECcHH------------
Confidence 35689999999999999976555433 8999999999999999887654332 2455555554
Q ss_pred ceeeeccCCcCCCCC---CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++..+ . ++..+++.+.++|||||.|++...
T Consensus 141 -----------~~~~~~~~~~~fD~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 141 -----------VLAREAGHREAYARAVARAV----A--PLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp -----------HHTTSTTTTTCEEEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred -----------HhhcccccCCCceEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3322 2478999999653 2 567899999999999999988653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=107.14 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=77.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++... .+|+++|+|+.+++.+++++...+. ...+.+...++.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------- 92 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAP------------- 92 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHH-------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHH-------------
Confidence 367899999999999999766555 7899999999999999988754322 122344444433
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ..++||+|++..+++ ++..+++.+.+.|+|||.+++...
T Consensus 93 ---------~~~~-~~~~~D~v~~~~~~~-----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 93 ---------EALC-KIPDIDIAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp ---------HHHT-TSCCEEEEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ---------Hhcc-cCCCCCEEEECCchH-----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 1121 125899999987654 457889999999999999998754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-14 Score=124.22 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=73.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++... .+|+++|+|+.|++.|++++...++ ...+.+...|+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~-------------- 137 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFL-------------- 137 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHH--------------
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChH--------------
Confidence 56899999999999999766554 6899999999999999988754332 123455555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+. ..++||+|+++.++++.... ...+.+++++|+|||.+++
T Consensus 138 ---------~~~-~~~~~D~v~~~~~~~~~~~~--~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 138 ---------LLA-SFLKADVVFLSPPWGGPDYA--TAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp ---------HHG-GGCCCSEEEECCCCSSGGGG--GSSSBCTTTSCSSCHHHHH
T ss_pred ---------Hhc-ccCCCCEEEECCCcCCcchh--hhHHHHHHhhcCCcceeHH
Confidence 332 35789999999888776632 3355566777777776544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=115.41 Aligned_cols=128 Identities=11% Similarity=0.138 Sum_probs=82.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...+. ...+.+...+.... ..+...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~--~~~~~~-- 130 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALET--LQVLID-- 130 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHH--HHHHHH--
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHH--HHHHHh--
Confidence 56799999999999999876665 34899999999999999998754432 12344545444300 000000
Q ss_pred ceeeeccCCcCCCCCCC--CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFTPET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~--~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
...+......+ +. ++||+|++... .++...+++.+.+.|+|||+|++ +++...|.+.++
T Consensus 131 --~~~~~~~~~~f--~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~-~~~~~~g~~~~~ 191 (239)
T 2hnk_A 131 --SKSAPSWASDF--AFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIA-DNVLWDGSVADL 191 (239)
T ss_dssp --CSSCCGGGTTT--CCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE-ECSSGGGGGGCT
T ss_pred --hcccccccccc--cCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEE-EccccCCcccCc
Confidence 00000000011 22 68999998754 23567889999999999999987 455666665544
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=111.47 Aligned_cols=108 Identities=8% Similarity=0.003 Sum_probs=77.1
Q ss_pred ccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccc
Q 021836 153 ARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 153 ~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
...+++.+|||+|||+|.++..+..... .+|+++|+++.|++.+++++...+ ++..+..+..
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~--------ni~~V~~d~~-------- 136 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR--------NIFPILGDAR-------- 136 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT--------TEEEEESCTT--------
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc--------CeeEEEEecc--------
Confidence 3467899999999999999997655432 389999999999999998875421 2222222222
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. .......+.+|+|++... |.. +...++.++.+.|||||.++++.
T Consensus 137 -----------~p-~~~~~~~~~vDvVf~d~~--~~~--~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 137 -----------FP-EKYRHLVEGVDGLYADVA--QPE--QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp -----------CG-GGGTTTCCCEEEEEECCC--CTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------Cc-cccccccceEEEEEEecc--CCh--hHHHHHHHHHHhccCCCEEEEEE
Confidence 00 023334678999987543 333 56789999999999999999864
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-12 Score=117.16 Aligned_cols=109 Identities=15% Similarity=0.262 Sum_probs=86.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|+|||||+|.++..++.+++. +++..|. |.+++.|+++..... ..+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~----------------------------~~r 229 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE----------------------------EEQ 229 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------------------------------CCS
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc----------------------------cCc
Confidence 4568999999999999988888776 7888887 889999998864321 123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
|+|...|...+ +...+|+|++.+++|++++++...+|+++++.|+|||.++|.|.+.++
T Consensus 230 v~~~~gD~~~~---~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 230 IDFQEGDFFKD---PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp EEEEESCTTTS---CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred eeeecCccccC---CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 55555554433 234589999999999999988899999999999999999999987654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=110.15 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++.... .+++++|+|+.+++.+++++...+.. .+.+...++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------~v~~~~~d~~------------- 125 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE------NIEPVQSRVE------------- 125 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS------SEEEEECCTT-------------
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CeEEEecchh-------------
Confidence 357999999999999997666543 38999999999999999887543221 1344444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
... +.++||+|+++.. . +...+++.+.+.|+|||.+++...
T Consensus 126 ----------~~~-~~~~~D~i~~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 126 ----------EFP-SEPPFDGVISRAF----A--SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ----------TSC-CCSCEEEEECSCS----S--SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ----------hCC-ccCCcCEEEEecc----C--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 333 3468999998542 3 568899999999999999999754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-13 Score=113.91 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=60.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|.++..++..... +++++|+|+.+++.|++++...+. .+.+...|+.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~------------ 89 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------VVDWAAADGI------------ 89 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHH------------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-------ceEEEEcchH------------
Confidence 36789999999999999987766544 899999999999999988754321 2334444433
Q ss_pred ceeeeccCCcCCCCC---CCCceeeEEcchhh------hhCChhH------------------HHHHHHHHHHcCCCCcE
Q 021836 235 KVKIAKKGISADFTP---ETGRYDVIWVQWCI------GHLTDDD------------------FVSFFKRAKVGLKPGGF 287 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l------~~~~~~d------------------l~~~l~~l~~~LkpGG~ 287 (307)
..+.. ..++||+|+++..+ +++.... ...+++++.++|||||+
T Consensus 90 ----------~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 90 ----------EWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp ----------HHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred ----------hhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 11110 13789999996433 2222211 17889999999999999
Q ss_pred EEEEec
Q 021836 288 FVLKEN 293 (307)
Q Consensus 288 lii~e~ 293 (307)
+++.+.
T Consensus 160 l~~~~~ 165 (215)
T 4dzr_A 160 GVFLEV 165 (215)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 555443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=111.49 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=75.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...+.. .+.+...+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~v~~~~~d~~----------- 138 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD------NVIVIVGDGT----------- 138 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT------TEEEEESCGG-----------
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CeEEEECCcc-----------
Confidence 3678999999999999997766653 48999999999999999887432211 1333333322
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+ +..++||+|++..+++|+. +++.+.|||||.+++...
T Consensus 139 -----------~~~-~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 -----------LGY-EPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp -----------GCC-GGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred -----------cCC-CCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 122 1256899999999998877 368899999999998755
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=111.00 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++... .++.+...++.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~v~~~~~d~~----------- 132 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDAN----------- 132 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTT-----------
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------CCeEEEECCCC-----------
Confidence 34678999999999999997665543 58999999999999999886432 22344444443
Q ss_pred cceeeeccCCcCC----CCCCCCceeeEEcchhhhhCChh-HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISAD----FTPETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~----~~~~~~~fDlIi~~~~l~~~~~~-dl~~~l~~l~~~LkpGG~lii~ 291 (307)
. .... ++||+|+ +++.++ ....+++++.+.|||||.+++.
T Consensus 133 ------------~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 133 ------------KPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ------------CGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------CcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 2 3333 6899999 344432 3467799999999999999996
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=117.37 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...+.. ..+.+++.|..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~-----~~v~~~~~D~~-------------- 185 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNR-------------- 185 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTT--------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEECCHH--------------
Confidence 57899999999999999876666557999999999999999987644331 12344444444
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++.. .++||+|++.... ....++..+.+.|||||.|++.++.
T Consensus 186 ---------~~~~-~~~fD~Vi~~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 186 ---------DFPG-ENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ---------TCCC-CSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------Hhcc-cCCccEEEECCch------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 4433 6789999986431 2367789999999999999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=116.06 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=73.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..... +|+|+|+|+.|++.|++++........ ....+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~----------------------~~~~n 103 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA----------------------GGFQN 103 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT----------------------CCCTT
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh----------------------cCCCe
Confidence 5678999999999999976555443 799999999999999876531000000 00112
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|++++.|....++ +++++||.|++.+.-.+.... ....+++.+.++|||||.|++..
T Consensus 104 v~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 104 IACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 4444444432232 346789999876432221100 01479999999999999999853
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=112.86 Aligned_cols=117 Identities=12% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+. ...+.+...+...
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~----------- 135 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALA----------- 135 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHH-----------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH-----------
Confidence 457999999999999997665543 3899999999999999988754322 1234444444320
Q ss_pred ceeeeccCCcCCCCCCC--CceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFTPET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~--~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
....+...+ ++||+|++... ..+...+++.+.++|+|||+|++ +++...|.+.++
T Consensus 136 --------~l~~l~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~-~~~~~~g~~~~~ 192 (232)
T 3cbg_A 136 --------TLEQLTQGKPLPEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVI-DNVLWHGKVTEV 192 (232)
T ss_dssp --------HHHHHHTSSSCCCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEE-ECTTGGGGGGCS
T ss_pred --------HHHHHHhcCCCCCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEE-eCCCcCCccCCc
Confidence 000111112 68999997643 23678899999999999999887 667777776655
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=121.94 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|..+..++..+.. +++++|+ +.+++.+++. ..+.+...|+.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~------------- 262 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------------SGIEHVGGDMF------------- 262 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTT-------------
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------------CCCEEEeCCcc-------------
Confidence 5679999999999999987776654 6888899 8888765431 11334444333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
. +. +. ||+|++.+++||+++++...++++++++|||||.|++.|.+.++
T Consensus 263 ---------~--~~-~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 311 (372)
T 1fp1_D 263 ---------A--SV-PQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 311 (372)
T ss_dssp ---------T--CC-CC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred ---------c--CC-CC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 2 22 23 99999999999999777779999999999999999999876544
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=119.53 Aligned_cols=102 Identities=13% Similarity=0.255 Sum_probs=79.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+|||+|..+..++..+.. +++++|+ +.|++.+++. ..+.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~------------------- 235 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTY------------------- 235 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEE-------------------
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEE-------------------
Confidence 4579999999999999987766544 7999999 9998766431 01333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC---CcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp---GG~lii~e~~~~~ 297 (307)
...|....+ + .||+|++.+++||+++++...++++++++||| ||.|++.|.+.++
T Consensus 236 ---~~~d~~~~~---p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 236 ---VGGDMFTSI---P-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp ---EECCTTTCC---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred ---EeccccCCC---C-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 333332222 2 39999999999999977677999999999999 9999999986544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=118.05 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+| .|++.|++++...++. ..+.++..++.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-----~~i~~~~~d~~-------------- 97 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-----DKITLLRGKLE-------------- 97 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-----TTEEEEESCTT--------------
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-----CCEEEEECchh--------------
Confidence 567999999999999997665555589999999 5999999887544331 23444455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhC-ChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++..+.++||+|++.+..+++ ....+..++..+.+.|||||.++.
T Consensus 98 ---------~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 98 ---------DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ---------TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ---------hccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 444445789999997653333 223578899999999999999873
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=123.68 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=78.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+ |++.|++++...++ ..++.++..++.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~-------------- 217 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVE-------------- 217 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchh--------------
Confidence 5679999999999999966554445899999998 99999988754332 123444444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.. +++||+|++...++|+..++....+..+.+.|||||.+++
T Consensus 218 ---------~~~~-~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 218 ---------EVSL-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ---------TCCC-SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred ---------hCcc-CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 3332 3689999998887787766777888899999999999985
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=117.23 Aligned_cols=101 Identities=21% Similarity=0.202 Sum_probs=76.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+.. .+.+...+..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~------~v~~~~~d~~----------- 136 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE------NVIFVCGDGY----------- 136 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC------SEEEEESCGG-----------
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CeEEEECChh-----------
Confidence 4678999999999999997665544 25999999999999999887543321 1344444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+..+..++||+|++..+++|+. +.+.+.|||||.+++...
T Consensus 137 ------------~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 ------------YGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp ------------GCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred ------------hccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 3222357899999999998887 357889999999999754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=127.59 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..++..+. +|+|||+|+.+++.|+..+...+. ..++|.+.+++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~-------------- 124 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD------FAAEFRVGRIE-------------- 124 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHH--------------
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHH--------------
Confidence 568999999999999997665544 699999999999999988754332 23566666655
Q ss_pred eeeccCCcCCC--CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~--~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++ ..++++||+|+|..+++|+.+++....+..+.+.|+++|..++...+
T Consensus 125 ---------~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 125 ---------EVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp ---------HHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred ---------HHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 33 12467899999999999998765344455677788888876665543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=103.06 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++. ...+++++|+|+.+++.+++++...+. ..+.+...++.
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~-------------- 93 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAE-------------- 93 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHH--------------
T ss_pred CCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCcc--------------
Confidence 567999999999999997655 455899999999999999988754322 12344444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ..+.++||+|++..+ . +...+++.+.+. |||.+++...
T Consensus 94 ---------~-~~~~~~~D~i~~~~~----~--~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 94 ---------D-VLDKLEFNKAFIGGT----K--NIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp ---------H-HGGGCCCSEEEECSC----S--CHHHHHHHHHHT--TCCEEEEEES
T ss_pred ---------c-cccCCCCcEEEECCc----c--cHHHHHHHHhhC--CCCEEEEEec
Confidence 2 122468999999877 2 668889999988 9999999764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=111.56 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=70.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+.++....... .....+.+.+.++.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--~~~~~v~~~~~d~~------------- 91 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK--GGLPNLLYLWATAE------------- 91 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG--TCCTTEEEEECCST-------------
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh--cCCCceEEEecchh-------------
Confidence 678999999999999998766643 38999999999999654333211000 00112344444443
Q ss_pred eeeeccCCcCCCCCCCCceeeEE---cchhhh--hCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIW---VQWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi---~~~~l~--~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.++...+. |.|+ +...++ |+. +...+++++.++|||||.|++.-
T Consensus 92 ----------~l~~~~~~-d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 92 ----------RLPPLSGV-GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ----------TCCSCCCE-EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------hCCCCCCC-CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence 34444444 5554 333332 665 34889999999999999999954
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=108.01 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..... |+++|+|+.+++.|++++...+. .+.++..++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~-------------- 98 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-------GARVVALPVE-------------- 98 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-------CCEEECSCHH--------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-------ceEEEeccHH--------------
Confidence 4578999999999999977666554 99999999999999988753221 2445454443
Q ss_pred eeeccCCcCCCC---CCCCceeeEEcchhhhhCChhHHHHHHHHHH--HcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~---~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~--~~LkpGG~lii~e~ 293 (307)
.... ...++||+|+++.+++ . ....+++.+. ++|+|||.+++..+
T Consensus 99 --------~~~~~~~~~~~~~D~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 99 --------VFLPEAKAQGERFTVAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp --------HHHHHHHHTTCCEEEEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred --------HHHHhhhccCCceEEEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 1110 0134799999987654 2 3345556665 99999999998655
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=106.42 Aligned_cols=95 Identities=21% Similarity=0.108 Sum_probs=71.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++... +|+++|+|+.|++. . ..+.+.+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----~-----------~~~~~~~~d~~-------------- 71 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----H-----------RGGNLVRADLL-------------- 71 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----C-----------SSSCEEECSTT--------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----c-----------cCCeEEECChh--------------
Confidence 45799999999999999755544 89999999999987 1 12345555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ...+++||+|+++..+++..+. +...+++++.+.| |||.+++...
T Consensus 72 ---------~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 72 ---------C-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp ---------T-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred ---------h-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 2 2234789999998887754432 3466788888888 9999999765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-12 Score=120.98 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=79.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHH-------HHHhCCCCCCCcccccccceeecCccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
.++.+|||+|||+|.++..++.... .+|+|+|+++.+++.| ++++...+..
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~--------------------- 299 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR--------------------- 299 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---------------------
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC---------------------
Confidence 4678999999999999997665433 4799999999999988 6665432210
Q ss_pred ccccCccceeeeccCCcCC-CC--CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCc
Q 021836 228 NKKVGSKKVKIAKKGISAD-FT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 299 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~-~~--~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~ 299 (307)
..+|++.++|.... +. ...++||+|++++++ +. +++...++++.+.|||||.|++.+.+.+..+
T Consensus 300 -----~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~~ 366 (433)
T 1u2z_A 300 -----LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSLTY 366 (433)
T ss_dssp -----CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred -----CCceEEEEcCccccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCCccc
Confidence 01223333321111 10 013689999987665 22 3778889999999999999999987766654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-12 Score=111.31 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCC-HHHHHHH---HHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s-~~~l~~A---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++.+|||||||+|..+..++..... +|+|+|+| +.|++.| +++....+.. .+.+...+..
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~------~v~~~~~d~~--------- 88 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS------NVVFVIAAAE--------- 88 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS------SEEEECCBTT---------
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC------CeEEEEcCHH---------
Confidence 6689999999999999976544443 79999999 7788776 5554333221 2344444444
Q ss_pred CccceeeeccCCcCCCCCC-CCceeeEEcchhhhhCC---hhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTPE-TGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~-~~~fDlIi~~~~l~~~~---~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.++.. .+.+|.|++++.+.+.. ..+...++++++++|||||.|++.
T Consensus 89 --------------~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 89 --------------SLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp --------------BCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred --------------HhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 33211 24567666654322110 012256899999999999999993
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-12 Score=111.14 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=81.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+. ...+.+...+...
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~----------- 132 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALE----------- 132 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHH-----------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHH-----------
Confidence 457999999999999997665432 4899999999999999988754332 1234444444320
Q ss_pred ceeeeccCCcCCCCCC--CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCC
Q 021836 235 KVKIAKKGISADFTPE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 303 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~--~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~ 303 (307)
....+... .++||+|++... ......+++.+.+.|+|||++++ +++...|.+.++
T Consensus 133 --------~~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~-~~~~~~g~~~~~ 189 (229)
T 2avd_A 133 --------TLDELLAAGEAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAV-LRVLWRGKVLQP 189 (229)
T ss_dssp --------HHHHHHHTTCTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEE-ECCSGGGGGGSC
T ss_pred --------HHHHHHhcCCCCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEE-ECCCcCCcccCc
Confidence 00011001 168999998643 23567889999999999999887 566666666554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-12 Score=112.64 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=75.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+. . +.+...++.
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~------~-v~~~~~d~~-------------- 177 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV------R-PRFLEGSLE-------------- 177 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC------C-CEEEESCHH--------------
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChh--------------
Confidence 568999999999999997655545 899999999999999988754321 1 344444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+ +.++||+|+++...+ .+..++..+.+.|+|||.+++...
T Consensus 178 --------~~~--~~~~fD~Vv~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 178 --------AAL--PFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp --------HHG--GGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------hcC--cCCCCCEEEECCcHH-----HHHHHHHHHHHHcCCCCEEEEEee
Confidence 112 246899999876543 457889999999999999999764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=112.16 Aligned_cols=113 Identities=8% Similarity=0.082 Sum_probs=75.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeC-CHHHHHHHHHHhC-----CCCCCCcccccccceeecCcccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESLA-----PENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~-s~~~l~~A~~~~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
++.+|||+|||+|.++..++.....+|+++|+ |+.+++.|++++. ..+... .....+.+...+..
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~-~~~~~v~~~~~~~~-------- 149 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET-VKRASPKVVPYRWG-------- 149 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTT--------
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc-CCCCCeEEEEecCC--------
Confidence 56799999999999999665554448999999 8999999999873 221100 00011222222111
Q ss_pred cCccceeeeccCCcCCCCC--CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCC---C--CcEEEEE
Q 021836 231 VGSKKVKIAKKGISADFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK---P--GGFFVLK 291 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~--~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lk---p--GG~lii~ 291 (307)
+....+.. ..++||+|++..+++|.. +...+++.+.++|+ | ||.++++
T Consensus 150 -----------~~~~~~~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 150 -----------DSPDSLQRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp -----------SCTHHHHHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred -----------CccHHHHhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 00001100 246899999999988765 77999999999999 9 9987664
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-12 Score=113.17 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=86.2
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccc--cHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccc
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGt--G~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~ 211 (307)
...+.|+......+.. .....+|||||||+ +..+..++.... .+|+++|.|+.|++.|++++.... .
T Consensus 60 ~~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~ 130 (277)
T 3giw_A 60 RANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------E 130 (277)
T ss_dssp HHHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------S
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------C
Confidence 3456777776654321 01335899999997 334444555432 389999999999999999885421 1
Q ss_pred cccceeecCcccccccccccCccceeeeccCCcCCCCCC--CCcee-----eEEcchhhhhCChhH-HHHHHHHHHHcCC
Q 021836 212 KATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVGLK 283 (307)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD-----lIi~~~~l~~~~~~d-l~~~l~~l~~~Lk 283 (307)
..+.|...|+...+. .+..+ .+.|| .|+++.+|||+++.+ ...+++++.+.|+
T Consensus 131 ~~~~~v~aD~~~~~~-------------------~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~ 191 (277)
T 3giw_A 131 GRTAYVEADMLDPAS-------------------ILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP 191 (277)
T ss_dssp SEEEEEECCTTCHHH-------------------HHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC
T ss_pred CcEEEEEecccChhh-------------------hhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC
Confidence 234555555540000 00000 12344 578899999999755 5889999999999
Q ss_pred CCcEEEEEeccC
Q 021836 284 PGGFFVLKENIA 295 (307)
Q Consensus 284 pGG~lii~e~~~ 295 (307)
|||+|++.+.+.
T Consensus 192 PGG~Lvls~~~~ 203 (277)
T 3giw_A 192 SGSYLAMSIGTA 203 (277)
T ss_dssp TTCEEEEEEECC
T ss_pred CCcEEEEEeccC
Confidence 999999987543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=111.21 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=82.7
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
....++..++... . .++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+.. .
T Consensus 94 ~te~l~~~~l~~~-~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~------~-- 160 (276)
T 2b3t_A 94 DTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK------N-- 160 (276)
T ss_dssp THHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC------S--
T ss_pred hHHHHHHHHHHhc-c----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------c--
Confidence 3455555555432 1 2567999999999999997765543 38999999999999999887432211 1
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcch-------------hhhhCCh----------hHHH
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQW-------------CIGHLTD----------DDFV 272 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~-------------~l~~~~~----------~dl~ 272 (307)
+++.+.|....+ +.++||+|+++. +++|.+. ....
T Consensus 161 --------------------v~~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~ 218 (276)
T 2b3t_A 161 --------------------IHILQSDWFSAL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV 218 (276)
T ss_dssp --------------------EEEECCSTTGGG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHH
T ss_pred --------------------eEEEEcchhhhc--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHH
Confidence 334444433222 256899999973 3333221 2468
Q ss_pred HHHHHHHHcCCCCcEEEEEe
Q 021836 273 SFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii~e 292 (307)
.+++.+.+.|+|||++++..
T Consensus 219 ~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 219 HIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp HHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 89999999999999999853
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=107.13 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.|++++...+.. .+.+...+..
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~v~~~~~d~~------------- 150 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK------NVHVILGDGS------------- 150 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC------SEEEEESCGG-------------
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC------CcEEEECCcc-------------
Confidence 366799999999999999766655367999999999999999887543321 1233333321
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ...+||+|++..+++++.+ ++.+.|+|||.+++.-.
T Consensus 151 ---------~~~~-~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 151 ---------KGFP-PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp ---------GCCG-GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred ---------cCCC-CCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 1222 2346999999998888763 57889999999999765
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=108.23 Aligned_cols=103 Identities=15% Similarity=0.013 Sum_probs=72.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+.++.... ..+.+...++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~---------- 136 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDAR---------- 136 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTT----------
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccC----------
Confidence 3467899999999999999876664 2 48999999999888776665321 12334444443
Q ss_pred ccceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. ++...++||+|++... .......++.++.+.|||||.+++.
T Consensus 137 ------------~~~~~~~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 137 ------------HPHKYRMLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp ------------CGGGGGGGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------ChhhhcccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 11 2223568999998554 2224466788999999999999984
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.4e-12 Score=111.29 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++.. .+.+...+..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~------------- 140 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSH------------- 140 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTT-------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchh-------------
Confidence 56799999999999999766653 3489999999999999988752 2345455554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++..+++||+|++.++. .+++++.++|||||.+++....
T Consensus 141 ----------~~~~~~~~fD~v~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 141 ----------RLPFSDTSMDAIIRIYAP---------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ----------SCSBCTTCEEEEEEESCC---------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred ----------hCCCCCCceeEEEEeCCh---------hhHHHHHHhcCCCcEEEEEEcC
Confidence 444456799999986552 2478899999999999998753
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=105.41 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=74.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++... ..+.+...++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------~~v~~~~~d~~---------- 132 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILGDAT---------- 132 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECCTT----------
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------CCCEEEEccCC----------
Confidence 3467899999999999999776553 2 48999999999999998887532 23444444443
Q ss_pred ccceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 233 SKKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 233 ~~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.. +....++||+|++... .......++.++.+.|||||.+++.
T Consensus 133 ------------~~~~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 133 ------------KPEEYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ------------CGGGGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------CcchhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 1112458999997654 1223345699999999999999987
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=110.90 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++... +. ..+.+...++.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~~~~d~~--------- 172 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRTSRSDIA--------- 172 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEEECSCTT---------
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEEEECchh---------
Confidence 3467899999999999999776652 348999999999999999987543 21 12333333333
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
. ..++++||+|++ +++ +...+++++.+.|||||.+++....
T Consensus 173 -------------~--~~~~~~fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 173 -------------D--FISDQMYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp -------------T--CCCSCCEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred -------------c--cCcCCCccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 223578999998 444 4468899999999999999997753
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-12 Score=113.24 Aligned_cols=99 Identities=17% Similarity=0.021 Sum_probs=65.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||||.++..++.....+|+|+|+|+.|++.++++...... ....+ +
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~----------~~~~~---------------~ 91 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVV----------MEQFN---------------F 91 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEE----------ECSCC---------------G
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccc----------cccce---------------E
Confidence 4569999999999999987777556899999999999998775432100 00000 1
Q ss_pred eeecc-CCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKK-GISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~-d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+... ++. ...+....||+++++. ..++++++++|||||.|++.
T Consensus 92 ~~~~~~~~~-~~~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 92 RNAVLADFE-QGRPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp GGCCGGGCC-SCCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred EEeCHhHcC-cCCCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEE
Confidence 11111 110 1011234566666542 56799999999999999986
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=107.65 Aligned_cols=102 Identities=24% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCCceEEEEeccccHHHHHHHHh-c-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++.. . ..+|+++|+++.+++.|++++...+.. ..+.+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~v~~----------------- 149 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-----DRVTI----------------- 149 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-----TTEEE-----------------
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-----CceEE-----------------
Confidence 46789999999999999987766 2 348999999999999999987543221 12333
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.|+... .+.++||+|++. .+ +...+++++.+.|+|||.+++...
T Consensus 150 -----~~~d~~~~--~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 150 -----KLKDIYEG--IEEENVDHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp -----ECSCGGGC--CCCCSEEEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -----EECchhhc--cCCCCcCEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 33333323 235689999983 33 446789999999999999998764
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=108.39 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=73.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..... +|+|+|+|+.+++.+++++......+.. ..+..+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--------------------~~~~~n 108 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTAS--------------------KHGFQN 108 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-C--------------------CSTTTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcccc--------------------ccCCCc
Confidence 5679999999999999987766654 7999999999999998876421000000 000012
Q ss_pred eeeeccCCcCCCC--CCCCceeeEEcchhhhhCChhHH-----------HHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDF-----------VSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~dl-----------~~~l~~l~~~LkpGG~lii~ 291 (307)
+++.+.|....+. ...+++|.|++.+ +++.. ..+++.+.++|+|||.|++.
T Consensus 109 v~~~~~D~~~~l~~~~~~~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 109 INVLRGNAMKFLPNFFEKGQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp EEEEECCTTSCGGGTSCTTCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeccHHHHHHHhccccccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 3344444432222 3467899998543 22211 47999999999999999985
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-12 Score=120.64 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=77.1
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEecc------ccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSG------IGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcG------tG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
..++..++.... .++.+||||||| +|..+..++..++ .+|+++|+|+.|. ..
T Consensus 203 ~~~Ye~lL~~l~-----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~--------- 262 (419)
T 3sso_A 203 TPHYDRHFRDYR-----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD--------- 262 (419)
T ss_dssp HHHHHHHHGGGT-----TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC---------
T ss_pred HHHHHHHHHhhc-----CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc---------
Confidence 345555554332 256899999999 7777776776653 3899999999972 11
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCC------CCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
..++.++..|.. ++++. +++||+|++..+ +++. +...+|++++++|||
T Consensus 263 ~~rI~fv~GDa~-----------------------dlpf~~~l~~~d~sFDlVisdgs-H~~~--d~~~aL~el~rvLKP 316 (419)
T 3sso_A 263 ELRIRTIQGDQN-----------------------DAEFLDRIARRYGPFDIVIDDGS-HINA--HVRTSFAALFPHVRP 316 (419)
T ss_dssp BTTEEEEECCTT-----------------------CHHHHHHHHHHHCCEEEEEECSC-CCHH--HHHHHHHHHGGGEEE
T ss_pred CCCcEEEEeccc-----------------------ccchhhhhhcccCCccEEEECCc-ccch--hHHHHHHHHHHhcCC
Confidence 234556666654 32222 478999998653 4443 678999999999999
Q ss_pred CcEEEEEecc
Q 021836 285 GGFFVLKENI 294 (307)
Q Consensus 285 GG~lii~e~~ 294 (307)
||+|++.|..
T Consensus 317 GGvlVi~Dl~ 326 (419)
T 3sso_A 317 GGLYVIEDMW 326 (419)
T ss_dssp EEEEEEECGG
T ss_pred CeEEEEEecc
Confidence 9999998764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-12 Score=115.34 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=69.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||||.++..++.....+|+++|+|+.|++.+.++... ...+...++.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----------v~~~~~~ni~-------------- 140 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----------VRSMEQYNFR-------------- 140 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----------EEEECSCCGG--------------
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----------cceecccCce--------------
Confidence 4579999999999999977777666899999999999986443211 0001011111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.... ..+ +..+||+|++..+++++ ..++.++.++|||||.|++.
T Consensus 141 -~l~~---~~l--~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 141 -YAEP---VDF--TEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp -GCCG---GGC--TTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred -ecch---hhC--CCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 0000 022 23459999998777643 56799999999999999886
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=115.65 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++...+..+..+|++||.|+ |++.|++.+..+++ ...+.++..+++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~-------------- 142 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVE-------------- 142 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeee--------------
Confidence 5678999999999999854445566899999986 88999888765544 234555555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.. +++||+|++-+.-..+. ...+..++....+.|||||.++-
T Consensus 143 ---------~~~l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 143 ---------TVEL-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp ---------TCCC-SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ---------eecC-CccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 4443 46899999854422222 22578889999999999998764
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=104.95 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...+... .....+.
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~v~------------------ 136 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-LSSGRVQ------------------ 136 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-HHTSSEE------------------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc-cCCCcEE------------------
Confidence 367899999999999999766553 2 389999999999999998864321100 0001223
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...|.. ......++||+|++...++++. +.+.+.|||||.+++...
T Consensus 137 ----~~~~d~~-~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 137 ----LVVGDGR-MGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ----EEESCGG-GCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred ----EEECCcc-cCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 3333332 2222356899999988776554 568899999999999754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=112.07 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+.+|||||||+|.++..+++.+.. +|++||+++.|++.|++++... ...+++++..|..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~-------------- 149 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDAR-------------- 149 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHH--------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHH--------------
Confidence 359999999999999987765433 7999999999999999987531 1223444444433
Q ss_pred eeeccCCcCCC-CCCCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADF-TPETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+ ....++||+|++....+......+ .++++.+++.|+|||+|++.-.
T Consensus 150 --------~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 150 --------MVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp --------HHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------HHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 111 113578999998543221111122 7899999999999999987543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=107.10 Aligned_cols=107 Identities=23% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNK 229 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+...
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---------------------- 136 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL---------------------- 136 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG----------------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc----------------------
Confidence 3668999999999999997655543 289999999999999998874321000
Q ss_pred ccCccceeeeccCCcCCCC---CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 230 KVGSKKVKIAKKGISADFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 230 ~~~~~~i~~~~~d~~~~~~---~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+..++++...|....+. +..++||+|++...++++ ++.+.+.|||||.+++.-.
T Consensus 137 -~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 137 -LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp -GSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred -cccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 000123333333322220 224689999998887664 3668899999999998643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=107.41 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCC-CCCCcccccccceeecCcccccccccccC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++... + ...+.+...++.
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~---------- 158 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLE---------- 158 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGG----------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchh----------
Confidence 367899999999999999776662 348999999999999999887432 1 112344444443
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+.+.++++||+|++. .+ +...+++++.++|+|||.+++....
T Consensus 159 -------------~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 159 -------------EAELEEAAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp -------------GCCCCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred -------------hcCCCCCCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 333345789999983 33 4467899999999999999997753
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=114.62 Aligned_cols=102 Identities=14% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|.++..++..+.. +++++|+ +.+++.+++. ..+.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~------------------- 240 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN------------ENLNF------------------- 240 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC------------SSEEE-------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC------------CCcEE-------------------
Confidence 4579999999999999988777654 7999999 7888655320 11333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCC---CcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lkp---GG~lii~e~~~~~ 297 (307)
...|... +. + +||+|++.+++||+++++...++++++++|+| ||.|++.|.+.++
T Consensus 241 ---~~~d~~~--~~-~-~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 298 (358)
T 1zg3_A 241 ---VGGDMFK--SI-P-SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298 (358)
T ss_dssp ---EECCTTT--CC-C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred ---EeCccCC--CC-C-CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence 3333332 22 2 49999999999999977677999999999999 9999999987543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=113.25 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++...... ....++.++..|..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~------------- 159 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--LADPRATVRVGDGL------------- 159 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHH-------------
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHH-------------
Confidence 45799999999999999876543 348999999999999999876210000 00122333333332
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii~e 292 (307)
..... .+++||+|++.....+.+...+ ..+++.+.+.|||||+|++..
T Consensus 160 ---------~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 160 ---------AFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp ---------HHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------HHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 11111 2578999999765443332222 689999999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=111.20 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++...+.. ....+++++..|.
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~-------------- 141 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDA-------------- 141 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCH--------------
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECCh--------------
Confidence 45799999999999999766543 348999999999999999987532100 0012233333333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii~e 292 (307)
........++||+|++.....+.....+ ..+++.+.+.|+|||++++..
T Consensus 142 --------~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 142 --------SKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp --------HHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred --------HHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 2211112568999998543222222233 689999999999999999863
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-12 Score=105.89 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||+|||. +++|+|+.|++.|+++... .+.+...++.
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~------------ 52 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----------EGRVSVENIK------------ 52 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----------TSEEEEEEGG------------
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----------CcEEEEechh------------
Confidence 34778999999996 2399999999999988632 2456566655
Q ss_pred ceeeeccCCcCCCCC---CCCceeeEEcchhhhhC-ChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTP---ETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~---~~~~fDlIi~~~~l~~~-~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+++ ++++||+|+++++++|+ . +...++++++++|||||.|++.+..
T Consensus 53 -----------~~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 53 -----------QLLQSAHKESSFDIILSGLVPGSTTL--HSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp -----------GGGGGCCCSSCEEEEEECCSTTCCCC--CCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----------cCccccCCCCCEeEEEECChhhhccc--CHHHHHHHHHHHCCCCEEEEEEccc
Confidence 3333 46899999999999999 6 5589999999999999999996543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=107.89 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKN 228 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+... .....
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~--------------- 146 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-LDSGQ--------------- 146 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-HHHTS---------------
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-cCCCc---------------
Confidence 3668999999999999997665432 379999999999999998864211000 00012
Q ss_pred cccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 229 KKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++...|....+. ..++||+|++...++++. +.+.+.|||||.+++.-.
T Consensus 147 -------v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 147 -------LLIVEGDGRKGYP-PNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp -------EEEEESCGGGCCG-GGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred -------eEEEECCcccCCC-cCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3333333332221 236899999998887765 568899999999998654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-11 Score=104.54 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=74.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++....+. ...+.+...++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~------------- 150 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFK------------- 150 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTT-------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChh-------------
Confidence 36789999999999999987766 56899999999999999988754322 012333333332
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
......++||+|++. .+ +...+++.+.+.|+|||.+++...
T Consensus 151 ----------~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 151 ----------DAEVPEGIFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----------TSCCCTTCBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----------hcccCCCcccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 222135689999973 33 346789999999999999999765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-12 Score=102.99 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++... . .+++++|+++ +++. ..+.+...++.
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~------------ 72 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFR------------ 72 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTT------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccc------------
Confidence 56799999999999999876663 3 4899999998 6532 12344444443
Q ss_pred ceeeeccCCcCCCC--------CCCCceeeEEcchhhhhCChhH---------HHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFT--------PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--------~~~~~fDlIi~~~~l~~~~~~d---------l~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+ .++++||+|+++.++++..... ...+++.+.++|+|||.+++....
T Consensus 73 -----------~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 73 -----------DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp -----------SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred -----------cchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 221 2357899999988776654321 168899999999999999997653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=110.24 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++.... .+|+++|+++.+++.|++++...++. .+.++..+..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~------~~~~~~~d~~------------- 179 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN------NVIPILADNR------------- 179 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS------SEEEEESCGG-------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CEEEEECChH-------------
Confidence 667999999999999997665532 38999999999999999988654332 2345555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
++ +..++||+|++.... +...++..+.+.|+|||++++..+..
T Consensus 180 ----------~~-~~~~~~D~Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 180 ----------DV-ELKDVADRVIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----------GC-CCTTCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----------Hc-CccCCceEEEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33 225689999987653 34667899999999999999987754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-11 Score=100.77 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=68.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+......+|+++|+|+.+++.|++++. .+.+...++.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~-------------- 105 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVS-------------- 105 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGG--------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHH--------------
Confidence 567999999999999997665544479999999999999998863 2455566555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+ +++||+|+++..++++.+.....+++++.+.+ |+++++
T Consensus 106 ---------~~---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 106 ---------EI---SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp ---------GC---CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEE
T ss_pred ---------HC---CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEE
Confidence 44 26899999999988886544467889999988 554433
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=107.89 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCC-C-CCCcccccccceeecCccccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-N-HMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~-~-~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++... + + ...+.+...++.
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~~~v~~~~~d~~--------- 163 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----PDNWRLVVSDLA--------- 163 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----CTTEEEECSCGG---------
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----CCcEEEEECchH---------
Confidence 367899999999999999876653 348999999999999999887432 1 0 112344444443
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
....++++||+|++. +. +...+++++.++|+|||.+++...
T Consensus 164 --------------~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 164 --------------DSELPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp --------------GCCCCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred --------------hcCCCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 333346789999983 33 335789999999999999999765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-11 Score=112.44 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=71.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++..... + ....+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~-~-~~~~r---------------------- 163 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-G-FSHPK---------------------- 163 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-G-GGCTT----------------------
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc-c-cCCCC----------------------
Confidence 45799999999999999766543 34899999999999999998753200 0 00122
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHH--HHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDF--VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl--~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|....+....++||+|++... .++.. ..+ ..+++.+.+.|+|||+|++..
T Consensus 164 v~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 164 LDLFCGDGFEFLKNHKNEFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEECSCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEEChHHHHHHhcCCCceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 333333332222113578999998653 22221 122 689999999999999999853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-11 Score=109.06 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...+.. .+.+.+.|..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~------~v~~~~~D~~----------- 179 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL------NVILFHSSSL----------- 179 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC------SEEEESSCGG-----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC------eEEEEECChh-----------
Confidence 3678999999999999998766542 47999999999999999987543321 2344444443
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcch------hhhhCC-------hh-------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~------~l~~~~-------~~-------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+....++||+|++.. ++++.+ .. ....+++++.++|||||.|+++..
T Consensus 180 ------------~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 180 ------------HIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp ------------GGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ------------hcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 2222246899999742 222211 11 125889999999999999999654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=110.17 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=76.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...++.+ ..+.+++.|+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~----~~v~~i~~D~~-------------- 213 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQ----APIRWICEDAM-------------- 213 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTT----SCEEEECSCHH--------------
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCc----cceEEEECcHH--------------
Confidence 457999999999999998776655 89999999999999999875433211 12344444443
Q ss_pred eeeccCCcCCCCC----CCCceeeEEcchhhhhC--------ChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP----ETGRYDVIWVQWCIGHL--------TDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~----~~~~fDlIi~~~~l~~~--------~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.. ..++||+|++....... ...+...+++.+.++|+|||+|++...
T Consensus 214 ---------~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 214 ---------KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ---------HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ---------HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 2111 14589999985321010 012568899999999999999777554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=111.56 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+++.+++.|++++ .... + .. . .. ......++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~-~--l~------~--~~------~~~~~~~v 136 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDN-G--LL------E--AM------LNGKHEKA 136 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTT-T--HH------H--HH------HTTCCSSE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcc-c--cc------c--cc------ccCCCCcE
Confidence 45799999999999999876653348999999999999999987 3210 0 00 0 00 00001123
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
++...|....+.. +++||+|++....+...... ...+++.+.+.|+|||++++.
T Consensus 137 ~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 137 KLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3333332211111 46899999865421111112 278899999999999999885
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=101.75 Aligned_cols=103 Identities=14% Similarity=0.010 Sum_probs=67.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+|||+|||+|..+..+..... .+|+++|+|+.|++...+.... ..++.+...|..
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~---------- 135 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADAR---------- 135 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTT----------
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccc----------
Confidence 55789999999999999997655432 2899999999987655433311 012334344432
Q ss_pred ccceeeeccCCcCC--CCCCCCceeeEEcchhhhhCChhHHHH-HHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISAD--FTPETGRYDVIWVQWCIGHLTDDDFVS-FFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~--~~~~~~~fDlIi~~~~l~~~~~~dl~~-~l~~l~~~LkpGG~lii~e 292 (307)
.. .....++||+|++..+. ++... ++..+.+.|||||.|+++.
T Consensus 136 ------------~~~~~~~~~~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 136 ------------FPQSYKSVVENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp ------------CGGGTTTTCCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------cchhhhccccceEEEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 11 11124689999987543 24344 4456666999999999874
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-11 Score=104.01 Aligned_cols=105 Identities=17% Similarity=0.065 Sum_probs=78.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++...++. .+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~---------------------------~~ 73 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---------------------------SK 73 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT---------------------------TT
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------------------Cc
Confidence 6689999999999999976655433 7999999999999999998654432 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|++.+.|....+. +.++||+|++.+.. .+.+..++......|+++|.|++.-+
T Consensus 74 I~~~~gD~l~~~~-~~~~~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 74 IDVRLANGLSAFE-EADNIDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp EEEEECSGGGGCC-GGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEEEECchhhccc-cccccCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECC
Confidence 4455555544442 23379999875543 33578889999999999999999765
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-11 Score=106.59 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=75.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++...+. ...+.+...++.
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~----------- 174 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDIS----------- 174 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGG-----------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHH-----------
Confidence 467899999999999999877663 34899999999999999988754321 112334344333
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. .+.++||+|++. .+ +...+++.+.++|+|||.+++...
T Consensus 175 -----------~~--~~~~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 175 -----------EG--FDEKDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp -----------GC--CSCCSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred -----------Hc--ccCCccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22 234689999983 33 446789999999999999999765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=103.53 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=78.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++...++. .+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---------------------------~~ 67 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---------------------------EK 67 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---------------------------TT
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------------------ce
Confidence 5689999999999999976655433 7999999999999999998655432 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|++...|....+++ ..+||+|+..+. ....+..++..+...|+|+|+|++.-+
T Consensus 68 i~~~~~d~l~~l~~-~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 68 IQVRLANGLAAFEE-TDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEECSGGGGCCG-GGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEEEECchhhhccc-CcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 44555554444432 226999987643 233468899999999999999999655
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=109.26 Aligned_cols=106 Identities=14% Similarity=0.026 Sum_probs=66.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. .+|+|+|+++ |+..+++. ........ .+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~----~~~~~~~~----------------------~~ 123 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEV----PRITESYG----------------------WN 123 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCC----CCCCCBTT----------------------GG
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhh----hhhhhccC----------------------CC
Confidence 36789999999999999965544 6799999998 53222111 00000000 12
Q ss_pred eeee--ccCCcCCCCCCCCceeeEEcchhhhhCChhH---H--HHHHHHHHHcCCCCc--EEEEEecc
Q 021836 236 VKIA--KKGISADFTPETGRYDVIWVQWCIGHLTDDD---F--VSFFKRAKVGLKPGG--FFVLKENI 294 (307)
Q Consensus 236 i~~~--~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d---l--~~~l~~l~~~LkpGG--~lii~e~~ 294 (307)
|.|. +.|+. .+ ++++||+|+|..+ ++..... . ..+++.+.++||||| .|++....
T Consensus 124 v~~~~~~~D~~-~l--~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 124 IVKFKSRVDIH-TL--PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp GEEEECSCCTT-TS--CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eEEEecccCHh-HC--CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3444 44443 33 2578999999866 3332211 1 137899999999999 99986543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-11 Score=106.34 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=69.2
Q ss_pred CCceEEEEeccccHHHHHHHHh----c-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR----Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~----~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
++.+|||||||+|..+..++.. . ..+|+++|+|+.|++.|+. . ..++.++..+..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------~~~v~~~~gD~~--------- 140 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------MENITLHQGDCS--------- 140 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------CTTEEEEECCSS---------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------CCceEEEECcch---------
Confidence 4579999999999999976554 2 2489999999999887751 1 123444444443
Q ss_pred CccceeeeccCCcCC--CCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHH-cCCCCcEEEEEe
Q 021836 232 GSKKVKIAKKGISAD--FTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKE 292 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~--~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~-~LkpGG~lii~e 292 (307)
.. ++. ...+||+|++... |. +...++.++.+ .|||||+|++.+
T Consensus 141 -------------~~~~l~~~~~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 141 -------------DLTTFEHLREMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp -------------CSGGGGGGSSSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred -------------hHHHHHhhccCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 11 121 2347999998654 32 56788999997 999999999964
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-11 Score=104.74 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=78.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++...++. .+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---------------------------~~ 73 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---------------------------EQ 73 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---------------------------TT
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------------------ce
Confidence 6689999999999999976655433 7999999999999999998654432 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|++.+.|....+. +..+||+|++.+. ...-+..++......|+++|+|++.-+
T Consensus 74 I~v~~gD~l~~~~-~~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 74 IDVRKGNGLAVIE-KKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp EEEEECSGGGGCC-GGGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEEEecchhhccC-ccccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 4455555443442 1235999987543 333578889999999999999999765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=111.36 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCC--CCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++... +. ...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~--------------------- 129 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDP--------------------- 129 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TST---------------------
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCC---------------------
Confidence 45799999999999999766552 358999999999999999886321 01 012
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
++++...|....+....++||+|++........... ..++++.+.+.|+|||++++.
T Consensus 130 -rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 130 -RVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp -TEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred -ceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 233444443222222257899999864322111111 267899999999999999885
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=111.52 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.... +.....+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~---------------------- 171 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKR---------------------- 171 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTT----------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCc----------------------
Confidence 45799999999999999766542 3489999999999999999875420 0000122
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCC-hhHH--HHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLT-DDDF--VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-~~dl--~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|........+++||+|++...- +.. ...+ ..+++.+.+.|+|||++++..
T Consensus 172 v~~~~~D~~~~l~~~~~~fDvIi~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 172 VNVFIEDASKFLENVTNTYDVIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEESCHHHHHHHCCSCEEEEEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEccHHHHHhhcCCCceEEEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3344443322111124689999986421 111 1122 789999999999999999853
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=110.37 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=73.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCC--CCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ++ ...
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~--------------------- 174 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDP--------------------- 174 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GST---------------------
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCC---------------------
Confidence 45799999999999999765543 248999999999999999886421 00 011
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcchh--hhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~--l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+|++...|....+. ...++||+|++... .+.........+++.+.++|+|||+|++..
T Consensus 175 -rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 175 -RVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp -TEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred -cEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 23344443322111 12468999998543 211111113789999999999999999863
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=109.05 Aligned_cols=109 Identities=19% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|.++..++... . .+|+|+|+++.|++.|++++...++. .+.+.+.|+.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~------~i~~~~~D~~----------- 264 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS------WIRFLRADAR----------- 264 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT------TCEEEECCGG-----------
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC------ceEEEeCChh-----------
Confidence 366799999999999999766655 2 47999999999999999988654331 3455555555
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhC-C-hh----HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHL-T-DD----DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~-~-~~----dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++.+.+.||+|+++..+... . .. ....+++.+.+.|+|||.+++...
T Consensus 265 ------------~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 265 ------------HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp ------------GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ------------hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 444445679999996443221 1 11 237889999999999999998754
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=111.16 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCC--CCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++... ++ ...+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~r-------------------- 150 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSK-------------------- 150 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTT--------------------
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCc--------------------
Confidence 45799999999999999866553 248999999999999999886320 00 0112
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh--HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|....+....++||+|++....+..... ....+++.+.+.|+|||+|++..
T Consensus 151 --v~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 151 --LTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp --EEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred --EEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 3333333322122235789999986442211111 13578999999999999999854
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=97.96 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++...+. .+.+...++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~-------------- 107 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------KFKVFIGDVS-------------- 107 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------SEEEEESCGG--------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECchH--------------
Confidence 5679999999999999976666555799999999999999998754321 2445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+ +++||+|+++..+++........+++.+.+.+ ||.+++
T Consensus 108 ---------~~---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 108 ---------EF---NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp ---------GC---CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred ---------Hc---CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 33 24899999988876665444567888888888 555444
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=105.79 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+.. ..+.+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~-----~~v~~-------------------- 177 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-----DRFFV-------------------- 177 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-----TSEEE--------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CceEE--------------------
Confidence 45689999999999999876661238999999999999999987543321 12334
Q ss_pred eeeccCCcCCCCCCCCce---eeEEcchhhh-----------hCCh------hHHHHHHHHHH-HcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRY---DVIWVQWCIG-----------HLTD------DDFVSFFKRAK-VGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~f---DlIi~~~~l~-----------~~~~------~dl~~~l~~l~-~~LkpGG~lii~ 291 (307)
.+.|+...+ .++| |+|+++-... |-+. .+-..+++++. +.|+|||+|++.
T Consensus 178 --~~~D~~~~~---~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 178 --RKGEFLEPF---KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp --EESSTTGGG---GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred --EECcchhhc---ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 444433222 2478 9999972111 2221 11137899999 999999999983
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-11 Score=106.60 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||||||+|.++..++... .+|+++|+++.+++.|++++.... ..+ ...++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~--------------~~~----------~~~rv 126 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFH--------------EVK----------NNKNF 126 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHH--------------HHH----------TCTTE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhc--------------ccc----------CCCeE
Confidence 45799999999999999877664 789999999999999987763210 000 01223
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++...|.. .+. ++||+|++. ..++ ..+++.+.+.|+|||++++.
T Consensus 127 ~~~~~D~~-~~~---~~fD~Ii~d-----~~dp--~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 127 THAKQLLD-LDI---KKYDLIFCL-----QEPD--IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEESSGGG-SCC---CCEEEEEES-----SCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred EEEechHH-HHH---hhCCEEEEC-----CCCh--HHHHHHHHHhcCCCcEEEEE
Confidence 44444433 222 689999986 2333 45899999999999999985
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-11 Score=106.33 Aligned_cols=124 Identities=10% Similarity=-0.025 Sum_probs=91.1
Q ss_pred ccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 021836 132 EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (307)
Q Consensus 132 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~ 210 (307)
+..++....|...++..+ .++.+|||||||+|.++..++..... +|+++|+++.|++.++.++...+..
T Consensus 113 reRLp~lD~fY~~i~~~i------~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~---- 182 (281)
T 3lcv_B 113 RERLPHLDEFYRELFRHL------PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP---- 182 (281)
T ss_dssp HHHGGGHHHHHHHHGGGS------CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC----
T ss_pred HHHhHhHHHHHHHHHhcc------CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----
Confidence 344556667777777643 24679999999999999865544333 8999999999999999998644321
Q ss_pred ccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 211 HKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
..+... |..... +.++||+|++.-+++|+.+......+ ++...|+|+|+++-
T Consensus 183 ---~~~~v~----------------------D~~~~~--p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 183 ---HRTNVA----------------------DLLEDR--LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp ---EEEEEC----------------------CTTTSC--CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred ---ceEEEe----------------------eecccC--CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 223233 332233 46789999999999999865555666 89999999999998
Q ss_pred Eec
Q 021836 291 KEN 293 (307)
Q Consensus 291 ~e~ 293 (307)
.+.
T Consensus 235 fp~ 237 (281)
T 3lcv_B 235 FPT 237 (281)
T ss_dssp EEC
T ss_pred ccc
Confidence 776
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-11 Score=106.42 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~------~v~~~~~D~~----------- 144 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL------NTIIINADMR----------- 144 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC------SEEEEESCHH-----------
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC------cEEEEeCChH-----------
Confidence 3678999999999999997766432 48999999999999999987654331 2444444443
Q ss_pred cceeeeccCCcCCCCC----CCCceeeEEcchh------hhh---CCh-------hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTP----ETGRYDVIWVQWC------IGH---LTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~----~~~~fDlIi~~~~------l~~---~~~-------~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.. ..++||+|++... +++ ... .....+++.+.+.|||||.|++...
T Consensus 145 ------------~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 145 ------------KYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp ------------HHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ------------hcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 2211 1468999997622 110 000 1347899999999999999999754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=99.39 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.. . ...+.+...++..... ....+.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~---------~~~v~~~~~d~~~~~~-~~~~~~ 83 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P---------IPNVYFIQGEIGKDNM-NNIKNI 83 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C---------CTTCEEEECCTTTTSS-CCC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C---------CCCceEEEccccchhh-hhhccc
Confidence 568999999999999998766654 489999999821 0 1123444454430000 000000
Q ss_pred cceeeec-----cCCcCCCCCCCCceeeEEcchhhhhCCh--hH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAK-----KGISADFTPETGRYDVIWVQWCIGHLTD--DD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~-----~d~~~~~~~~~~~fDlIi~~~~l~~~~~--~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
..++... .++... .++++||+|++..++++... .+ ...+++.+.++|||||.|++..
T Consensus 84 ~~i~~~~~~~~~~~~~~~--~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEI--LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp --------CHHHHHHHHH--HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhh--cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 0000000 000000 13468999999876654321 11 1347899999999999999854
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-11 Score=109.26 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=71.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCC--CCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++... +. ...+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~-------------------- 145 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPR-------------------- 145 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTT--------------------
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCc--------------------
Confidence 45799999999999999766553 358999999999999999886321 00 0112
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-h--HHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~--dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|.........++||+|++...-..... . ....+++.+.+.|+|||+|++.
T Consensus 146 --v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 146 --AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp --EEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred --eEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 334444332222222568999998543210111 0 1268899999999999999985
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-11 Score=113.11 Aligned_cols=111 Identities=9% Similarity=0.046 Sum_probs=77.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ...+.+++.|+.
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~----~~~v~~~~~D~~-------------- 273 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVF-------------- 273 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHH--------------
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHH--------------
Confidence 45799999999999999876656668999999999999999988654331 003445555543
Q ss_pred eeeccCCcCCCC---CCCCceeeEEcchhh-----hhCCh--hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFT---PETGRYDVIWVQWCI-----GHLTD--DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~---~~~~~fDlIi~~~~l-----~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ....+||+|++.-.. .+..+ .++..++..+.+.|+|||+|++..+
T Consensus 274 --------~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 274 --------DYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp --------HHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred --------HHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1111 013589999985322 12221 2456788899999999999999765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=118.63 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ...+.+++.|..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~-------------- 600 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCL-------------- 600 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHH--------------
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHH--------------
Confidence 45799999999999999877666668999999999999999998654432 113444444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh-----------hhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC-----------IGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~-----------l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+....++||+|++.-. +... .+...++..+.++|+|||+|++..+
T Consensus 601 --------~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 601 --------AWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp --------HHHHHCCCCEEEEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --------HHHHhcCCCccEEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 212223468999998532 1111 2568889999999999999998655
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-11 Score=109.90 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||||||+|..+..++... ..+|+++|+++.+++.|++++...+.. .....+++++..|..
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~~~v~~~~~D~~------------- 142 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQG-AFDDPRAVLVIDDAR------------- 142 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCHH-------------
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc-cccCCceEEEEchHH-------------
Confidence 45799999999999999766543 348999999999999999876321000 000122334333332
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhh---CChhH--HHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGH---LTDDD--FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~---~~~~d--l~~~l~~l~~~LkpGG~lii~e 292 (307)
..+....++||+|++....+. ..... ...+++.+.+.|+|||+|++..
T Consensus 143 ---------~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 143 ---------AYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ---------HHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------HHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 212112578999998755432 11111 3789999999999999999853
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=106.00 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHhCCCC----CCCcccccccceeecCccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPEN----HMAPDMHKATNFFCVPLQGQREKNK 229 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~-~~v~~vD~s~~~l~~A~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (307)
.++.+|||+|||+|.++..++... . .+|+++|+++.+++.|++++...+ ..+.. +
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~----------~--------- 164 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE----------E--------- 164 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS----------C---------
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc----------c---------
Confidence 367899999999999999776653 3 589999999999999998874211 00000 0
Q ss_pred ccCccceeeeccCCcCCC-CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 230 KVGSKKVKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 230 ~~~~~~i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+|++...|..... ..++++||+|++... +...+++.+.++|+|||.|++...
T Consensus 165 --~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 165 --WPDNVDFIHKDISGATEDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp --CCCCEEEEESCTTCCC-------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred --cCCceEEEECChHHcccccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 0012344444443322 223568999998532 123478999999999999998654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=110.87 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=78.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...+.. ..+.++..+..
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-----~~v~~~~~d~~-------------- 277 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAF-------------- 277 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHH--------------
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ccceEEECCHH--------------
Confidence 56799999999999999766654668999999999999999988644321 13445555543
Q ss_pred eeeccCCcCCCCC----CCCceeeEEcchhhhhCCh-------hHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTP----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~----~~~~fDlIi~~~~l~~~~~-------~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++.. ..++||+|++.-.....+. .+...++..+.+.|+|||.|++..+.
T Consensus 278 ---------~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 278 ---------EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ---------HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ---------HHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1111 2468999998532111111 25678899999999999999987653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=99.93 Aligned_cols=118 Identities=10% Similarity=-0.024 Sum_probs=84.3
Q ss_pred chhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccc
Q 021836 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (307)
Q Consensus 134 ~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~ 213 (307)
.++....|...++.. .++.+|||+|||+|.++..+. ...+|+++|+++.|++.+++++...+ ..
T Consensus 89 rLp~ld~fY~~i~~~-------~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-------~~ 152 (253)
T 3frh_A 89 RLAELDTLYDFIFSA-------ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-------WD 152 (253)
T ss_dssp HGGGHHHHHHHHTSS-------CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-------CE
T ss_pred HhhhHHHHHHHHhcC-------CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-------CC
Confidence 344555565555542 256899999999999998654 44489999999999999999874332 12
Q ss_pred cceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 214 TNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 214 ~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+...|.. ... .+++||+|++.-++||+.+......+ ++...|+++|+++-.+
T Consensus 153 ~~~~v~D~~----------------------~~~--~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 153 FTFALQDVL----------------------CAP--PAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EEEEECCTT----------------------TSC--CCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred ceEEEeecc----------------------cCC--CCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 233333332 222 35699999999888888765545555 8888999999998877
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-11 Score=105.62 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
...++..++... .. ...++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++...+.. ..+.+
T Consensus 48 ~~~~~~~~~~~~-~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~ 120 (254)
T 2h00_A 48 YIHWVEDLIGHQ-DS-DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-----DLIKV 120 (254)
T ss_dssp HHHHHHHHHCCC-CG-GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEE
T ss_pred HHHHHHHHHhhc-cc-cCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-----ccEEE
Confidence 345555555422 10 01246799999999999998766654 348999999999999999987543321 12344
Q ss_pred eecCcccccccccccCccceeeeccC-CcCCCCCC-CCceeeEEcchhhhhCCh-------------hHHHHHHHHHHHc
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKG-ISADFTPE-TGRYDVIWVQWCIGHLTD-------------DDFVSFFKRAKVG 281 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~-~~~fDlIi~~~~l~~~~~-------------~dl~~~l~~l~~~ 281 (307)
...+.. + +...+... +++||+|+++..+++... .....++..++++
T Consensus 121 ~~~d~~-------------------~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (254)
T 2h00_A 121 VKVPQK-------------------TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 181 (254)
T ss_dssp EECCTT-------------------CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred EEcchh-------------------hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHH
Confidence 444332 0 00011111 258999999854433220 0112455666777
Q ss_pred CCCCcEEEEE
Q 021836 282 LKPGGFFVLK 291 (307)
Q Consensus 282 LkpGG~lii~ 291 (307)
|||||.+.+.
T Consensus 182 LkpgG~l~~~ 191 (254)
T 2h00_A 182 MAEGGELEFV 191 (254)
T ss_dssp HHHHTHHHHH
T ss_pred EecCCEEEEE
Confidence 7777766554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-10 Score=106.20 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=76.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+.. .+.+...|..
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~------~v~~~~~D~~----------- 320 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK------IVKPLVKDAR----------- 320 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC------SEEEECSCTT-----------
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC------cEEEEEcChh-----------
Confidence 4678999999999999998766543 47999999999999999987654332 2334344433
Q ss_pred cceeeeccCCcCCCC--CCCCceeeEEc------chhhhhCCh-------hHH-------HHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFT--PETGRYDVIWV------QWCIGHLTD-------DDF-------VSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~--~~~~~fDlIi~------~~~l~~~~~-------~dl-------~~~l~~l~~~LkpGG~lii~ 291 (307)
.+. .++++||+|++ ..++++.++ .++ ..+++.+.+.|||||.|+++
T Consensus 321 ------------~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~ 388 (450)
T 2yxl_A 321 ------------KAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT 388 (450)
T ss_dssp ------------CCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------------hcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 222 22368999995 233433321 111 67899999999999999987
Q ss_pred ec
Q 021836 292 EN 293 (307)
Q Consensus 292 e~ 293 (307)
+.
T Consensus 389 tc 390 (450)
T 2yxl_A 389 TC 390 (450)
T ss_dssp ES
T ss_pred eC
Confidence 65
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-11 Score=108.51 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..++.. .+|+|+|+++ |+..++++. ....... .+
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~----~~~~~~~----------------------~~ 131 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKP----RLVETFG----------------------WN 131 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCC----CCCCCTT----------------------GG
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhch----hhhhhcC----------------------CC
Confidence 36789999999999999965544 6799999998 643222110 0000000 12
Q ss_pred eeee--ccCCcCCCCCCCCceeeEEcchhhhhCChhH---H--HHHHHHHHHcCCCCc--EEEEEec
Q 021836 236 VKIA--KKGISADFTPETGRYDVIWVQWCIGHLTDDD---F--VSFFKRAKVGLKPGG--FFVLKEN 293 (307)
Q Consensus 236 i~~~--~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d---l--~~~l~~l~~~LkpGG--~lii~e~ 293 (307)
|+|. +.|+. .++ +++||+|+|..+ ++..... . ..+++.+.++||||| .|++...
T Consensus 132 v~~~~~~~D~~-~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 132 LITFKSKVDVT-KME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp GEEEECSCCGG-GCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred eEEEeccCcHh-hCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 3344 44443 332 578999999876 3332211 1 137899999999999 9988554
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-11 Score=110.76 Aligned_cols=108 Identities=20% Similarity=0.122 Sum_probs=78.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+..+ +.++..+..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~------~~~~~~d~~-------------- 267 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN------VRVLEANAF-------------- 267 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT------EEEEESCHH--------------
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC------ceEEECCHH--------------
Confidence 4578999999999999976665 5689999999999999999886544321 455555544
Q ss_pred eeeccCCcCCCCC----CCCceeeEEcchhhhhCC-------hhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTP----ETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~----~~~~fDlIi~~~~l~~~~-------~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++.. ..++||+|++.-.....+ ......++..+.+.|+|||+|++..+.
T Consensus 268 ---------~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 268 ---------DLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp ---------HHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ---------HHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 146899999853211110 025678999999999999999998763
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=107.68 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=74.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++...+.. ..+.+.|..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~-------~~~~~~D~~-------------- 271 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLR-------VDIRHGEAL-------------- 271 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCC-------CEEEESCHH--------------
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCC-------CcEEEccHH--------------
Confidence 4789999999999999987665555 999999999999999988654332 123334332
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-------hhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+....+.||+|++.-....-+ ..+...++..+.++|+|||+|++..+.
T Consensus 272 --------~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 272 --------PTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp --------HHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --------HHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11111123499999853311100 124578899999999999999977663
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=109.41 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=79.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ...+.++..|+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~-------------- 281 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVF-------------- 281 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHH--------------
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHH--------------
Confidence 46799999999999999876655668999999999999999988644320 013445555543
Q ss_pred eeeccCCcCCCC---CCCCceeeEEcchhhhhC-------ChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFT---PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~---~~~~~fDlIi~~~~l~~~-------~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
..+. ...++||+|++.-..... .......++..+.+.|+|||++++..+.
T Consensus 282 --------~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 282 --------KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp --------HHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --------HHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1111 013589999986321110 0036788999999999999999997663
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-10 Score=105.13 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+| |+|.++..+..... .+|+++|+|+.|++.|++++...++. ++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~------~v~-------------------- 224 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE------DIE-------------------- 224 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC------CEE--------------------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CEE--------------------
Confidence 467999999 99999997766555 58999999999999999987543210 233
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEE
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 288 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~l 288 (307)
+++.|....++. .+++||+|+++..++.. ....+++++.++|||||.+
T Consensus 225 --~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 225 --IFTFDLRKPLPDYALHKFDTFITDPPETLE---AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp --EECCCTTSCCCTTTSSCBSEEEECCCSSHH---HHHHHHHHHHHTBCSTTCE
T ss_pred --EEEChhhhhchhhccCCccEEEECCCCchH---HHHHHHHHHHHHcccCCeE
Confidence 444444332432 24689999998654332 2588999999999999944
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-10 Score=102.43 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..+++. ..+.+++.|..
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~-----~~v~~~~~D~~-------------- 185 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNR-------------- 185 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTT--------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCcHH--------------
Confidence 67899999999999999877666668999999999999999998765442 23334444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
++. ..+.||.|+++... .-..++..+.++|||||++.+.+++.
T Consensus 186 ---------~~~-~~~~~D~Vi~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 186 ---------DFP-GENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ---------TCC-CCSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---------Hhc-cccCCCEEEECCCC------cHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 343 25789999976431 22456778889999999998876643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=104.57 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|..|..++.... ..|+++|+|+.+++.+++++...+.. .+.+...|..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~------nv~~~~~D~~------------ 178 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS------NVALTHFDGR------------ 178 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC------SEEEECCCST------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------cEEEEeCCHH------------
Confidence 678999999999999998766543 47999999999999999988644332 1333344433
Q ss_pred ceeeeccCCcCCCCC-CCCceeeEEcc------hhhhhCC-------hh-------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTP-ETGRYDVIWVQ------WCIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~-~~~~fDlIi~~------~~l~~~~-------~~-------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.. ..++||+|++. .++.+.+ .. ....++..+.++|||||.|+++..
T Consensus 179 -----------~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 179 -----------VFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp -----------THHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred -----------HhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 2211 24689999972 2232221 11 135789999999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-10 Score=93.65 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----------CcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee-ecCccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQGQR 225 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~ 225 (307)
++.+|||+|||+|.++..++.... .+|+++|+|+.+ . ...+.+. ..++....
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~------~~~~~~~~~~d~~~~~ 84 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P------LEGATFLCPADVTDPR 84 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C------CTTCEEECSCCTTSHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c------CCCCeEEEeccCCCHH
Confidence 568999999999999998766643 579999999831 0 0112333 33332000
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh----hCChh-----HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG----HLTDD-----DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~----~~~~~-----dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+. . ..++++||+|++..+++ +..+. ....+++++.++|||||.|++...
T Consensus 85 ------------~~~-~~~-~-~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 85 ------------TSQ-RIL-E-VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp ------------HHH-HHH-H-HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------HHH-HHH-H-hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 000 000 0 01235799999865332 21211 115789999999999999999754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=103.05 Aligned_cols=108 Identities=17% Similarity=0.070 Sum_probs=77.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+. .+.+...|..
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~------------ 305 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGR------------ 305 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTT------------
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchh------------
Confidence 3678999999999999998776654 4899999999999999998765432 1234444443
Q ss_pred ceeeeccCCcCCCC--CCCCceeeEEcc------hhhhhCCh-------hHH-------HHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFT--PETGRYDVIWVQ------WCIGHLTD-------DDF-------VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~--~~~~~fDlIi~~------~~l~~~~~-------~dl-------~~~l~~l~~~LkpGG~lii~e 292 (307)
... .+.++||+|++. .++++.++ .++ ..+++++.+.|||||.|+++.
T Consensus 306 -----------~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 306 -----------YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp -----------CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----------hchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 221 124689999952 23333321 111 588999999999999999976
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 375 c 375 (429)
T 1sqg_A 375 C 375 (429)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.3e-10 Score=102.38 Aligned_cols=100 Identities=9% Similarity=0.039 Sum_probs=74.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++.. +. ...+|+++|+|+.+++.+++++...+.. ..+.+++.|..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~-----~~v~~~~~D~~-------------- 253 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE-----HKIIPILSDVR-------------- 253 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCGG--------------
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECChH--------------
Confidence 567999999999999997 54 5568999999999999999988654331 13445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
.+. ++||+|++.... ....++..+.+.|+|||.+++.++..
T Consensus 254 ---------~~~---~~fD~Vi~dpP~------~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 254 ---------EVD---VKGNRVIMNLPK------FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---------GCC---CCEEEEEECCTT------TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---------Hhc---CCCcEEEECCcH------hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 332 689999986331 12367889999999999999976643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.2e-10 Score=106.64 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=75.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...+. . +.+.+.|..
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~----------- 161 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPR----------- 161 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHH-----------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHH-----------
Confidence 3678999999999999998766543 3799999999999999998864432 1 344444433
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcc------hhhhhCC-------hhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQ------WCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~------~~l~~~~-------~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ...++||+|++. .++.+-+ ..+ ...+++.+.++|||||.|+++.
T Consensus 162 ------------~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 162 ------------ALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp ------------HHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ------------HhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 221 024689999952 1222211 111 2778999999999999999865
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 230 C 230 (464)
T 3m6w_A 230 C 230 (464)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=100.30 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+.++...+. ...+.+.|.
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~~~D~--------- 193 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDG--------- 193 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCT---------
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEEECCC---------
Confidence 568999999999999987665543 4799999999999999987642211 123333332
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHH----------------HHHHHHHHHcCCCCcEEEEEe
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDF----------------VSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl----------------~~~l~~l~~~LkpGG~lii~e 292 (307)
.... ..++||+|+++-.++++..++. ..+++.+.+.|+|||.++++-
T Consensus 194 -------------l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 194 -------------LANL--LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp -------------TSCC--CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------CCcc--ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2222 2468999999977666543322 268999999999999988875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=97.76 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=39.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++.+|||+|||+|.++..++... .+|+++|+++.|++.+++++..
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~ 72 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG 72 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHh
Confidence 366799999999999999776654 4799999999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=101.54 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=72.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|++++...++ ...+.+...|+.
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~------------- 278 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDAT------------- 278 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGG-------------
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChh-------------
Confidence 5679999999999999976555442 799999999999999998865432 123455555554
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCC-----hhH-HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLT-----DDD-FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-----~~d-l~~~l~~l~~~LkpGG~lii~ 291 (307)
.++.+.++||+|+++..++.-. -.+ ...+++.+.+.| +|+.++++
T Consensus 279 ----------~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 279 ----------QLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp ----------GGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred ----------hCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 4444457899999975432211 112 367888999988 44444443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=92.09 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=63.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+|+|+++.. . ...+.++..|+.
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~------~~~v~~~~~D~~-------------- 72 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E------IAGVRFIRCDIF-------------- 72 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C------CTTCEEEECCTT--------------
T ss_pred CCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c------CCCeEEEEcccc--------------
Confidence 6789999999999999965544 5589999998631 0 112445455543
Q ss_pred eeeccCCcCCCCC--------C---CCceeeEEcchhh--------hhCC-hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTP--------E---TGRYDVIWVQWCI--------GHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~--------~---~~~fDlIi~~~~l--------~~~~-~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... . .++||+|++.... .+.. ......+++.+.++|||||.|++...
T Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 73 ---------KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp ---------SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1110 0 1489999985321 1110 01236788999999999999998643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-09 Score=98.26 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=63.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeC----CHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~----s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.++.+|||+|||+|.++..++.. .+|+++|+ ++.+++.+. ... .
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~--------~-------------------- 128 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MST--------Y-------------------- 128 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCS--------T--------------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhh--------c--------------------
Confidence 36789999999999999965544 57999998 554331100 000 0
Q ss_pred Cccceeeecc-CCcCCCCCCCCceeeEEcchhhh---hCChh-HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 232 GSKKVKIAKK-GISADFTPETGRYDVIWVQWCIG---HLTDD-DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 232 ~~~~i~~~~~-d~~~~~~~~~~~fDlIi~~~~l~---~~~~~-dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+...|+|.+. |+. .+ +.++||+|+|..+++ +..+. ....+|..+.++|||||.|++..
T Consensus 129 ~~~~v~~~~~~D~~-~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 129 GWNLVRLQSGVDVF-FI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp TGGGEEEECSCCTT-TS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCeEEEeccccc-cC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 0122444444 433 23 246899999976542 21111 11257889999999999998843
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.8e-09 Score=98.52 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=69.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++ ....+|+++|+|+.|++.|++++...+. . +.++..++.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la-~~~~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~-------------- 347 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLA-KRGFNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDR-------------- 347 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTT--------------
T ss_pred CCCEEEEeeccchHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChH--------------
Confidence 56799999999999999754 4456899999999999999988743221 1 445555544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.. .+||+|++.-.-..+. ..+++.+. .|+|||+++++-|
T Consensus 348 ---------~~~~--~~fD~Vv~dPPr~g~~----~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 348 ---------EVSV--KGFDTVIVDPPRAGLH----PRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ---------TCCC--TTCSEEEECCCTTCSC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred ---------HcCc--cCCCEEEEcCCccchH----HHHHHHHH-hcCCCcEEEEECC
Confidence 3322 2899999865432222 33455554 4899999999744
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.8e-09 Score=102.10 Aligned_cols=109 Identities=13% Similarity=0.013 Sum_probs=75.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...++. ++.+.+.|..
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~------nv~v~~~Da~----------- 166 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS------NAIVTNHAPA----------- 166 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS------SEEEECCCHH-----------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEeCCHH-----------
Confidence 4678999999999999998766543 37999999999999999988655432 1333344433
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcch------hhhhCC-------hh-------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~~------~l~~~~-------~~-------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. ..+++||+|++.- ++.+-+ .. ....++..+.++|||||.|+++.
T Consensus 167 ------------~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 167 ------------ELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp ------------HHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------------HhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 211 0146899999632 121111 11 12378999999999999999865
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 235 C 235 (456)
T 3m4x_A 235 C 235 (456)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=93.23 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.. ..+|+++|+++.|++.+++++...+. ..+.+...|+.
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~------~~v~~~~~D~~-------------- 100 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY------NNLEVYEGDAI-------------- 100 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEC----CC--------------
T ss_pred CcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECchh--------------
Confidence 5679999999999999975544 55899999999999999988643211 12334444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHH---------------HHHHHcCCCCc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFF---------------KRAKVGLKPGG 286 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l---------------~~l~~~LkpGG 286 (307)
.+. ..+||+|+++... +...+.+..++ +.+.++++++|
T Consensus 101 ---------~~~--~~~~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 101 ---------KTV--FPKFDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp ---------SSC--CCCCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ---------hCC--cccCCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 332 2479999987554 34434444555 34567788777
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=95.17 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~ 217 (307)
...++..++...- ..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+.. ++.|+
T Consensus 271 ~e~l~~~~~~~l~----~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~------~v~f~ 339 (433)
T 1uwv_A 271 NQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ------NVTFY 339 (433)
T ss_dssp HHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC------SEEEE
T ss_pred HHHHHHHHHHhhc----CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEE
Confidence 4445555544221 235679999999999999975544 668999999999999999887543321 24454
Q ss_pred ecCcccccccccccCccceeeeccCCcCCC---CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 218 CVPLQGQREKNKKVGSKKVKIAKKGISADF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 218 ~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..++. ..+ +...++||+|++.-.-..+ ..+++.+.. ++|+++++++-|
T Consensus 340 ~~d~~----------------------~~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc~ 390 (433)
T 1uwv_A 340 HENLE----------------------EDVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCN 390 (433)
T ss_dssp ECCTT----------------------SCCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESC
T ss_pred ECCHH----------------------HHhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEECC
Confidence 54443 222 1234689999986442211 234444443 689999888654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.5e-08 Score=85.81 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=39.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.++.+|||+|||+|.++..++... .+|+++|+++.|++.+++++.
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~ 73 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLV 73 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhc
Confidence 366899999999999999876665 679999999999999998874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=96.83 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=67.9
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+|||+|||+|.++..++... ..+++|+|+++.+++.| ..+.+++.|+.
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~------------ 91 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFL------------ 91 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGG------------
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChh------------
Confidence 45699999999999999766553 34899999999988765 12344455544
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhh----------CChhH-----------------HHHHHHHHHHcCCCCcE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGH----------LTDDD-----------------FVSFFKRAKVGLKPGGF 287 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~----------~~~~d-----------------l~~~l~~l~~~LkpGG~ 287 (307)
.+. ..++||+|+++-.+.. +.++. ...+++.+.+.|+|||.
T Consensus 92 -----------~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~ 159 (421)
T 2ih2_A 92 -----------LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 159 (421)
T ss_dssp -----------GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred -----------hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence 332 2468999999632211 22211 12679999999999999
Q ss_pred EEEEec
Q 021836 288 FVLKEN 293 (307)
Q Consensus 288 lii~e~ 293 (307)
++++-.
T Consensus 160 ~~~i~p 165 (421)
T 2ih2_A 160 LVFVVP 165 (421)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.3e-10 Score=97.60 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=37.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.++.+|||+|||+|.++..++... .+|+++|+|+.|++.++++.
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~ 71 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKL 71 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTT
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHh
Confidence 366899999999999999766654 67999999999998887665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-08 Score=94.73 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=73.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--------------~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (307)
.++.+|||.|||+|.+...+.... ..+++|+|+++.+++.|+.++...+... ....+.+.|.
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~----~~~~i~~gD~ 245 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT----DRSPIVCEDS 245 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS----SCCSEEECCT
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc----CCCCEeeCCC
Confidence 356799999999999988665432 2369999999999999998764322210 0123333333
Q ss_pred ccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh---------------HHHHHHHHHHHcCCCCc
Q 021836 222 QGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD---------------DFVSFFKRAKVGLKPGG 286 (307)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~---------------dl~~~l~~l~~~LkpGG 286 (307)
. ... ..++||+|+++-.+.+.... .-..+++.+.+.|||||
T Consensus 246 l-----------------------~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG 301 (445)
T 2okc_A 246 L-----------------------EKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 301 (445)
T ss_dssp T-----------------------TSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred C-----------------------CCc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCC
Confidence 2 221 13489999998665543221 12478999999999999
Q ss_pred EEEEEe
Q 021836 287 FFVLKE 292 (307)
Q Consensus 287 ~lii~e 292 (307)
.++++-
T Consensus 302 ~~a~V~ 307 (445)
T 2okc_A 302 RAAVVL 307 (445)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-08 Score=91.16 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||||||+|.++..++.. ..+|+++|+++.|++.+++++.. ..++.+++.|+.
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l------------- 106 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDAL------------- 106 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTT-------------
T ss_pred CCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchh-------------
Confidence 36789999999999999976655 56899999999999999988741 123445555544
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhh
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCI 263 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l 263 (307)
.+..+..+||+|+++...
T Consensus 107 ----------~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 107 ----------KVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp ----------TSCGGGSCCSEEEEECCG
T ss_pred ----------hCCcccCCccEEEEeCcc
Confidence 333344579999987554
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=90.15 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=75.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAA 196 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---------------------------------------~~v~~vD~s~~~l~~A 196 (307)
.++..+||.+||+|.+.+..+.... .+|+|+|+++.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 3567899999999999886544322 2499999999999999
Q ss_pred HHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhh--hhCChhHHHHH
Q 021836 197 RESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCI--GHLTDDDFVSF 274 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l--~~~~~~dl~~~ 274 (307)
++++...++. ..+.+.+.|+. ++.. ..+||+|+++-.+ ..-..+++..+
T Consensus 273 r~Na~~~gl~-----~~I~~~~~D~~-----------------------~l~~-~~~fD~Iv~NPPYG~rl~~~~~l~~l 323 (384)
T 3ldg_A 273 RKNAREVGLE-----DVVKLKQMRLQ-----------------------DFKT-NKINGVLISNPPYGERLLDDKAVDIL 323 (384)
T ss_dssp HHHHHHTTCT-----TTEEEEECCGG-----------------------GCCC-CCCSCEEEECCCCTTTTSCHHHHHHH
T ss_pred HHHHHHcCCC-----CceEEEECChH-----------------------HCCc-cCCcCEEEECCchhhccCCHHHHHHH
Confidence 9998654432 12444455444 4433 3589999998443 22234567888
Q ss_pred HHHHHHcCCC--CcEEEEEec
Q 021836 275 FKRAKVGLKP--GGFFVLKEN 293 (307)
Q Consensus 275 l~~l~~~Lkp--GG~lii~e~ 293 (307)
++.+.+.||+ ||.+++...
T Consensus 324 y~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 324 YNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHhhCCCcEEEEEEC
Confidence 8888888876 888777543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-08 Score=92.60 Aligned_cols=108 Identities=12% Similarity=0.093 Sum_probs=72.8
Q ss_pred CCceEEEEeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~---------------------------------------~~v~~vD~s~~~l~~A~ 197 (307)
++..|||.+||+|.+++..+.... .+|+|+|+++.|++.|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 567899999999999886544322 24999999999999999
Q ss_pred HHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh-hC-ChhHHHHHH
Q 021836 198 ESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG-HL-TDDDFVSFF 275 (307)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~-~~-~~~dl~~~l 275 (307)
+++...++. ..+.+.+.|+. ++.. ..+||+|+++-.+. .+ ...++..+.
T Consensus 281 ~Na~~~gl~-----~~I~~~~~D~~-----------------------~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly 331 (393)
T 3k0b_A 281 QNAVEAGLG-----DLITFRQLQVA-----------------------DFQT-EDEYGVVVANPPYGERLEDEEAVRQLY 331 (393)
T ss_dssp HHHHHTTCT-----TCSEEEECCGG-----------------------GCCC-CCCSCEEEECCCCCCSHHHHHHHHHHH
T ss_pred HHHHHcCCC-----CceEEEECChH-----------------------hCCC-CCCCCEEEECCCCccccCCchhHHHHH
Confidence 998654432 13445555544 4433 35899999984421 11 123566677
Q ss_pred HHHHHcCCC--CcEEEEEec
Q 021836 276 KRAKVGLKP--GGFFVLKEN 293 (307)
Q Consensus 276 ~~l~~~Lkp--GG~lii~e~ 293 (307)
+.+.+.||+ ||.+++...
T Consensus 332 ~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 332 REMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEEC
Confidence 777766665 887776543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-08 Score=93.20 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=45.1
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
+.+|||+|||+|.++.. ++....+|+++|+|+.+++.|++++...+.. ++.++..+..
T Consensus 214 ~~~vLDl~cG~G~~~l~-la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~------~v~~~~~d~~ 271 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLA-LARNFDRVLATEIAKPSVAAAQYNIAANHID------NVQIIRMAAE 271 (369)
T ss_dssp CSEEEEESCTTSHHHHH-HGGGSSEEEEECCCHHHHHHHHHHHHHTTCC------SEEEECCCSH
T ss_pred CCEEEEccCCCCHHHHH-HHhcCCEEEEEECCHHHHHHHHHHHHHcCCC------ceEEEECCHH
Confidence 46899999999999995 5566678999999999999999988654332 3455555543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=85.55 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=61.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++ +|||||||+|.+|..++... .+|+++|+++.|++.+++++.. .++.++..|+.
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l------------- 101 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDAL------------- 101 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGG-------------
T ss_pred CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---------CCEEEEECChh-------------
Confidence 356 99999999999999876665 5799999999999999988742 23455555554
Q ss_pred eeeeccCCcCCCCCCC-CceeeEEcchhhhhCChhHHHHHHHH
Q 021836 236 VKIAKKGISADFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKR 277 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~-~~fDlIi~~~~l~~~~~~dl~~~l~~ 277 (307)
.+..+. ..+|.|+++... +++.+-+..++..
T Consensus 102 ----------~~~~~~~~~~~~iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 102 ----------LYPWEEVPQGSLLVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp ----------GSCGGGSCTTEEEEEEECS-SCCHHHHHHHHHH
T ss_pred ----------hCChhhccCccEEEecCcc-cccHHHHHHHhcC
Confidence 332221 258888887654 5554445555544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=89.91 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAA 196 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~---------------------------------------~~v~~vD~s~~~l~~A 196 (307)
.++.+|||.+||+|.+++..+.... .+|+|+|+++.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 3568999999999999887654321 2599999999999999
Q ss_pred HHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh-hCC-hhHHHHH
Q 021836 197 RESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG-HLT-DDDFVSF 274 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~-~~~-~~dl~~~ 274 (307)
+.++...++ ...+.+.+.|+. ++.. +.+||+|+++-.+. .+. .+++..+
T Consensus 274 r~Na~~~gl-----~~~i~~~~~D~~-----------------------~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~l 324 (385)
T 3ldu_A 274 RENAEIAGV-----DEYIEFNVGDAT-----------------------QFKS-EDEFGFIITNPPYGERLEDKDSVKQL 324 (385)
T ss_dssp HHHHHHHTC-----GGGEEEEECCGG-----------------------GCCC-SCBSCEEEECCCCCCSHHHHHHHHHH
T ss_pred HHHHHHcCC-----CCceEEEECChh-----------------------hcCc-CCCCcEEEECCCCcCccCCHHHHHHH
Confidence 998754332 113444444443 4433 45899999975532 121 2356777
Q ss_pred HHHHHHcCCC--CcEEEEEe
Q 021836 275 FKRAKVGLKP--GGFFVLKE 292 (307)
Q Consensus 275 l~~l~~~Lkp--GG~lii~e 292 (307)
.+.+.+.||+ ||.+++..
T Consensus 325 y~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 325 YKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHHHHHhhCCCCEEEEEE
Confidence 7777777776 77776654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-08 Score=92.88 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccc-cceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||++||+|..+..++... ..+|+++|+++.+++.+++++..+++.+ . +.++..|..
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~-----~~v~v~~~Da~----------- 115 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPE-----DRYEIHGMEAN----------- 115 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCG-----GGEEEECSCHH-----------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-----ceEEEEeCCHH-----------
Confidence 46799999999999999877653 3589999999999999999987554321 1 334444432
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+. ...++||+|++.- + . ....++..+.+.|+|||+|+++-
T Consensus 116 -----------~~l~~~~~~~fD~V~lDP---~-g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 116 -----------FFLRKEWGFGFDYVDLDP---F-G--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -----------HHHHSCCSSCEEEEEECC---S-S--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------HHHHHhhCCCCcEEEECC---C-c--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 1111 1135799999864 1 1 12468889999999999888864
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-07 Score=82.81 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=41.8
Q ss_pred CCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~ 152 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV 152 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999876653 24899999999999999999865543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=84.76 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred CCCCceEEEEec------cccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce-eecCccccc
Q 021836 155 NNQHLVALDCGS------GIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQGQR 225 (307)
Q Consensus 155 ~~~~~~ILDiGc------GtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 225 (307)
.+++.+|||+|| |+|. .. ++.... .+|+++|+|+. +. .+.+ +..|+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~-~a~~~~~~~~V~gvDis~~--------v~-----------~v~~~i~gD~~--- 116 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AV-LRQWLPTGTLLVDSDLNDF--------VS-----------DADSTLIGDCA--- 116 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HH-HHHHSCTTCEEEEEESSCC--------BC-----------SSSEEEESCGG---
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HH-HHHHcCCCCEEEEEECCCC--------CC-----------CCEEEEECccc---
Confidence 346789999999 5576 22 333333 37999999987 11 2345 566654
Q ss_pred ccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhh--------hCC-hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 226 EKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 226 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~--------~~~-~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+ .++||+|+++...+ +.. ......+++.+.+.|||||.|++...
T Consensus 117 --------------------~~~~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 117 --------------------TVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp --------------------GCCC-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --------------------cCCc-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3332 36899999864311 111 11346889999999999999999653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.4e-08 Score=92.59 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=71.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++....... ....... . ...+..+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~-------~~~~~~~----~--~~~gl~~ 113 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGE-------LRESKGR----A--ILKGEKT 113 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSC-------CEECSSE----E--EEESSSE
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccc-------ccccccc----c--cccCCCc
Confidence 45789999999999999877763 3479999999999999999875430000 0000000 0 0000011
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++.+.|.........++||+|++.- . . ....++..+.+.|+|||+++++
T Consensus 114 i~v~~~Da~~~~~~~~~~fD~I~lDP-~-~----~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 114 IVINHDDANRLMAERHRYFHFIDLDP-F-G----SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEESCHHHHHHHSTTCEEEEEECC-S-S----CCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEcCcHHHHHHhccCCCCEEEeCC-C-C----CHHHHHHHHHHhcCCCCEEEEE
Confidence 33444443221111135799999642 1 1 2257788899999999988875
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=84.69 Aligned_cols=112 Identities=20% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||=||.|.|..+..+++.. ..+|+.||+++.+++.+++.+..... ... ...+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-------------~~~----------~dpR 139 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-------------GSY----------DDPR 139 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-------------TGG----------GCTT
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-------------ccc----------CCCc
Confidence 56799999999999999877643 35899999999999999988642100 000 0133
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh--hhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~--l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|+.-.. ..-...---.++++.+++.|+|||+++.-
T Consensus 140 v~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 140 FKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 455555544444445678999996321 00000001167899999999999999874
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-07 Score=83.38 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=39.2
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.++.+|||||||+|.+|..++.. ..+|+++|+++.|++.+++++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~ 72 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYN 72 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHT
T ss_pred CCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHh
Confidence 36789999999999999976555 4689999999999999999875
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=75.79 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=69.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||+||| +.|..+ ++. ..+|+.+|.++...+.|++++...++. ...++.++..+......+. .|.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~l-A~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg--~p~~~ 101 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVA-AELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWG--HPVSD 101 (202)
T ss_dssp HCSEEEEESCS--HHHHHH-HTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGG--CBSSS
T ss_pred CCCEEEEECch--HHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhccc--ccccc
Confidence 45799999984 677744 444 358999999999999999988765430 0123445544432000000 00000
Q ss_pred eeeeccCCcCCC------CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~------~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
-++ +....+ ....++||+|++-.-. ....+..+...|+|||++ +.||+...
T Consensus 102 ~~~---~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~I-v~DNv~~r 158 (202)
T 3cvo_A 102 AKW---RSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTL-LFDDYSQR 158 (202)
T ss_dssp TTG---GGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEE-EETTGGGC
T ss_pred hhh---hhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEE-EEeCCcCC
Confidence 000 000000 0123689999986531 135566677999999988 55885433
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-07 Score=80.56 Aligned_cols=105 Identities=12% Similarity=-0.006 Sum_probs=60.0
Q ss_pred CCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||+|||+|.++..++.. ....++++|++..+.. . ..........+..+..+++
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~------~--pi~~~~~g~~ii~~~~~~d------------ 132 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE------K--PMNVQSLGWNIITFKDKTD------------ 132 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC------C--CCCCCBTTGGGEEEECSCC------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc------c--ccccCcCCCCeEEEeccce------------
Confidence 46779999999999999954443 2347889998743310 0 0000000001111111111
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhh----hCChhHHHHHHHHHHHcCCCC-cEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIG----HLTDDDFVSFFKRAKVGLKPG-GFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~----~~~~~dl~~~l~~l~~~LkpG-G~lii~ 291 (307)
.....+++||+|+|..+.+ ..+......+++.+.+.|+|| |.|++.
T Consensus 133 -----------v~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 133 -----------IHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp -----------TTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred -----------ehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 1223467899999976543 111111124578889999999 999984
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-07 Score=91.29 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=67.0
Q ss_pred CCceEEEEeccccHHHHHHHH---hcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 157 QHLVALDCGSGIGRITKNLLI---RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~---~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
+...|||+|||+|.+....+. .... +|++||.|+ |...+++.....++ ..+++++..+++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~e--------- 421 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMR--------- 421 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTT---------
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCcce---------
Confidence 446799999999988443333 2333 689999997 55666666544433 344555555555
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
++.. +++.|+|++=+.=..+-.+....++....+.|||||.++
T Consensus 422 --------------ev~L-PEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 422 --------------EWVA-PEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp --------------TCCC-SSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred --------------eccC-CcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5543 478999998543212222234567888889999999864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=80.46 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCCceeeEEcchhhhhCCh------------------------------------hHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 249 PETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 249 ~~~~~fDlIi~~~~l~~~~~------------------------------------~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++++||+|+++.+||++.+ .|+..+|+..++.|+|||.+++.-
T Consensus 146 fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 146 FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVC 225 (374)
T ss_dssp SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45789999999999999862 156778999999999999999864
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
.
T Consensus 226 ~ 226 (374)
T 3b5i_A 226 L 226 (374)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-07 Score=83.36 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=36.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH-------HHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~-------~~l~~A~~~~~ 201 (307)
++.+|||+|||+|..+..++.. ..+|+++|+|+ .+++.|+++..
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~ 133 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPE 133 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHH
T ss_pred CcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHH
Confidence 4578999999999999976554 45799999999 99998887653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-07 Score=80.64 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=37.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.++.+|||+|||+|.++..++.....+|+++|+++.|++.++++
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc
Confidence 35679999999999999976655346899999999999999765
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=80.81 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=67.2
Q ss_pred CceEEEEeccccHHHHHHHHh-------------c----CC-cEEEEeCC-----------HHHHHHHHHHhCCCCCCCc
Q 021836 158 HLVALDCGSGIGRITKNLLIR-------------Y----FN-EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~-------------~----~~-~v~~vD~s-----------~~~l~~A~~~~~~~~~~~~ 208 (307)
..+|+|+|||+|..|..++.. . .. +|...|+. +.+.+.+++.....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~----- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK----- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC-----
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC-----
Confidence 689999999999999876654 0 11 57788876 55555443332110
Q ss_pred ccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh-------------------
Q 021836 209 DMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD------------------- 269 (307)
Q Consensus 209 ~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~------------------- 269 (307)
...++...+.. +|. ...++.+++|+|+++++||++.+.
T Consensus 128 ----~~~~f~~gvpg-------------SFy------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i 184 (384)
T 2efj_A 128 ----IGSCLIGAMPG-------------SFY------SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYS 184 (384)
T ss_dssp ----TTSEEEEECCS-------------CTT------SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSS
T ss_pred ----CCceEEEecch-------------hhh------hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEe
Confidence 00122222110 000 123457899999999999987542
Q ss_pred ------------------HHHHHHHHHHHcCCCCcEEEEEec
Q 021836 270 ------------------DFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 270 ------------------dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
|+..+|+.-++.|+|||.+++.-.
T Consensus 185 ~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 185 SKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI 226 (384)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 123347777999999999998644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=86.17 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc------------------------------------------C-CcEEEEeCCHHHH
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY------------------------------------------F-NEVDLLEPVSHFL 193 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~------------------------------------------~-~~v~~vD~s~~~l 193 (307)
++..|||.+||+|.+.+..+... . .+++|+|+++.|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 56789999999999988654321 1 2699999999999
Q ss_pred HHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCC--CCceeeEEcchhhh--hCChh
Q 021836 194 DAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE--TGRYDVIWVQWCIG--HLTDD 269 (307)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fDlIi~~~~l~--~~~~~ 269 (307)
+.|+.++...++. ..+.+...|+. ++..+ .++||+|+++-... .-.++
T Consensus 270 ~~A~~N~~~agv~-----~~i~~~~~D~~-----------------------~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~ 321 (703)
T 3v97_A 270 QRARTNARLAGIG-----ELITFEVKDVA-----------------------QLTNPLPKGPYGTVLSNPPYGERLDSEP 321 (703)
T ss_dssp HHHHHHHHHTTCG-----GGEEEEECCGG-----------------------GCCCSCTTCCCCEEEECCCCCC---CCH
T ss_pred HHHHHHHHHcCCC-----CceEEEECChh-----------------------hCccccccCCCCEEEeCCCccccccchh
Confidence 9999998654431 22344444443 33221 33899999984432 12233
Q ss_pred HHHHHHHHHHHc---CCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVG---LKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~---LkpGG~lii~e 292 (307)
++..+.+.+.+. +.|||.+++..
T Consensus 322 ~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 322 ALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 455555555444 45899888764
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=83.95 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=72.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-------------------~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
.++.+|+|.+||+|.+...+.... ..+++|+|+++.++..|+.++...+..+. ......+
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-~~~~~~I 246 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAI 246 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBSE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-ccccCCe
Confidence 356799999999999887655431 12699999999999999987643322110 0001222
Q ss_pred eecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh------------hHHHHHHHHHHHcCCC
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKP 284 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~------------~dl~~~l~~l~~~Lkp 284 (307)
.+ .|.........++||+|+++-.+..... ..-..++..+.+.|+|
T Consensus 247 ~~----------------------gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 304 (541)
T 2ar0_A 247 RL----------------------GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 304 (541)
T ss_dssp EE----------------------SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred Ee----------------------CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC
Confidence 23 3322111112468999999865443221 1124789999999999
Q ss_pred CcEEEEEe
Q 021836 285 GGFFVLKE 292 (307)
Q Consensus 285 GG~lii~e 292 (307)
||.++++-
T Consensus 305 gGr~a~V~ 312 (541)
T 2ar0_A 305 GGRAAVVV 312 (541)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEe
Confidence 99988764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=79.01 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|++++...+ .++.+++.++.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~~d~~ 85 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFKVSYR 85 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEECCGG
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEECCHH
Confidence 3668999999999999998777653 489999999999999999875432 23555555554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.5e-07 Score=88.65 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=66.7
Q ss_pred CceEEEEeccccHHHHHHHHh--cC------------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccc
Q 021836 158 HLVALDCGSGIGRITKNLLIR--YF------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQG 223 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~--~~------------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (307)
...|||+|||+|.++...+.. .. .+|++||.|+.++...+.... .++ ...+.++..+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----~d~VtVI~gd~e- 482 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----KRRVTIIESDMR- 482 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----TTCSEEEESCGG-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----CCeEEEEeCchh-
Confidence 468999999999996432221 11 289999999977766554432 222 234666666665
Q ss_pred ccccccccCccceeeeccCCcCCCCCC-----CCceeeEEcchhhhhCC-hhHHHHHHHHHHHcCCCCcEEE
Q 021836 224 QREKNKKVGSKKVKIAKKGISADFTPE-----TGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~fDlIi~~~~l~~~~-~~dl~~~l~~l~~~LkpGG~li 289 (307)
++..+ .++.|+|++-+. .++. .+-..+.|..+.+.|||||+++
T Consensus 483 ----------------------ev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 483 ----------------------SLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp ----------------------GHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ----------------------hcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 33221 468999998654 3332 2234567888889999999765
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.8e-07 Score=79.99 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=60.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..+..+|||+|||+|.++...+.. ....|+++|++..+...+.. ... ....+..+..+.
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~------~~~--~g~~ii~~~~~~------------ 147 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM------RTT--LGWNLIRFKDKT------------ 147 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC------CCB--TTGGGEEEECSC------------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc------ccc--CCCceEEeeCCc------------
Confidence 346779999999999999964433 23378999997653211100 000 000111111111
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhh----hCChhHHHHHHHHHHHcCCCC--cEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIG----HLTDDDFVSFFKRAKVGLKPG--GFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~----~~~~~dl~~~l~~l~~~LkpG--G~lii~ 291 (307)
|+. .+ ..+++|+|+|..... ..+......++.-+...|+|| |.|++.
T Consensus 148 --------dv~-~l--~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 148 --------DVF-NM--EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp --------CGG-GS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred --------chh-hc--CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 111 22 357899999876543 111111234578888999999 999985
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=77.75 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=36.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~--v~~vD~s~~~l~~A~~~~~ 201 (307)
.++.+|||||||+|.+|. + ... .+ |+++|+++.|++.+++++.
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l-~~~-~~~~v~avEid~~~~~~a~~~~~ 64 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-P-VGE-RLDQLTVIELDRDLAARLQTHPF 64 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-H-HHT-TCSCEEEECCCHHHHHHHHTCTT
T ss_pred CCcCEEEEECCCCcHHHH-h-hhC-CCCeEEEEECCHHHHHHHHHHhc
Confidence 356799999999999999 4 443 56 9999999999999998764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=77.49 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=38.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCc---EEEEeCCHHHHHHHHHHh
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESL 200 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~---v~~vD~s~~~l~~A~~~~ 200 (307)
.++.+|||||||+|.++..++.....+ |+++|+++.|++.++++.
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~ 88 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF 88 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence 367899999999999999876654432 999999999999999873
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-06 Score=78.98 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=72.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||=||.|.|..+.++++....+|+.||+++.+++.|++.+....-...+.. ...++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~p--------------------r~~rv 264 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNL--------------------KGDCY 264 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSS--------------------EETTE
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccc--------------------cccce
Confidence 4579999999999999998876666899999999999999998754211000000 01122
Q ss_pred eeeccCCcCCC---CCCCCceeeEEcchh-------hhhCCh-hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADF---TPETGRYDVIWVQWC-------IGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~---~~~~~~fDlIi~~~~-------l~~~~~-~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++...|....+ ....++||+|+.-.. ...... .-.+++++.+++.|+|||+++.-
T Consensus 265 ~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 265 QVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33333222111 112467999996421 011111 11368899999999999999874
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-06 Score=83.90 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=38.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
++.+|||+|||+|..+.. ++....+|+++|+|+.|++.|++++..
T Consensus 93 ~g~~VLDLgcG~G~~al~-LA~~g~~V~~VD~s~~~l~~Ar~N~~~ 137 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIA-LMSKASQGIYIERNDETAVAARHNIPL 137 (410)
T ss_dssp TTCEEEESSCSSSHHHHH-HHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHH-HHhcCCEEEEEECCHHHHHHHHHhHHH
Confidence 368999999999999995 455556899999999999999998753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=70.82 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=59.2
Q ss_pred CCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||+||++|.++..++.. ....|+++|++..+.. ... .+.....++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~--------~P~-------~~~~~~~~i------------- 131 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE--------KPI-------HMQTLGWNI------------- 131 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC--------CCC-------CCCBTTGGG-------------
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc--------ccc-------cccccCCce-------------
Confidence 37789999999999999965543 2347889998653210 000 000000000
Q ss_pred ceeeec-cCCcCCCCCCCCceeeEEcchhhhhCChh-----HHHHHHHHHHHcCCCC-cEEEEE
Q 021836 235 KVKIAK-KGISADFTPETGRYDVIWVQWCIGHLTDD-----DFVSFFKRAKVGLKPG-GFFVLK 291 (307)
Q Consensus 235 ~i~~~~-~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-----dl~~~l~~l~~~LkpG-G~lii~ 291 (307)
+.+.. .++ .....+++|+|+|..... .... ....++.-+...|+|| |.|++.
T Consensus 132 -v~~~~~~di---~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 132 -VKFKDKSNV---FTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp -EEEECSCCT---TTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred -EEeecCcee---eecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11110 011 112356899999865443 2111 1234578888999999 999986
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=76.16 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCceEEEEeccccHHHHHHHHh-------cC------CcEEEEeCCH---HHHHH-----------HHHHhCCCCCCCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-------YF------NEVDLLEPVS---HFLDA-----------ARESLAPENHMAPD 209 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-------~~------~~v~~vD~s~---~~l~~-----------A~~~~~~~~~~~~~ 209 (307)
+..+|||+|+|+|..+..++.. .. -+++++|..+ +++.. +++.+..+...
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~--- 136 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMP--- 136 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCS---
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccc---
Confidence 5579999999999988865543 22 2699999776 55553 34433322110
Q ss_pred cccccceeecCcccccccccccCccceeeeccCCcCCCCCCC----CceeeEEcc-hhhhhCChhH--HHHHHHHHHHcC
Q 021836 210 MHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPET----GRYDVIWVQ-WCIGHLTDDD--FVSFFKRAKVGL 282 (307)
Q Consensus 210 ~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~fDlIi~~-~~l~~~~~~d--l~~~l~~l~~~L 282 (307)
...+....+. .+..+|+++..|..+.++..+ ..||+|+.- ++-... ++ -.++++.+.+.|
T Consensus 137 ---~~g~~r~~~~--------~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~--p~lw~~~~l~~l~~~L 203 (257)
T 2qy6_A 137 ---LPGCHRLLLD--------EGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKN--PDMWTQNLFNAMARLA 203 (257)
T ss_dssp ---CSEEEEEEEC----------CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTC--GGGCCHHHHHHHHHHE
T ss_pred ---ccchhheecc--------CCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccC--hhhcCHHHHHHHHHHc
Confidence 0000000010 123456677776554332212 379999974 222111 12 267999999999
Q ss_pred CCCcEEEE
Q 021836 283 KPGGFFVL 290 (307)
Q Consensus 283 kpGG~lii 290 (307)
+|||.|+.
T Consensus 204 ~pGG~l~t 211 (257)
T 2qy6_A 204 RPGGTLAT 211 (257)
T ss_dssp EEEEEEEE
T ss_pred CCCcEEEE
Confidence 99999885
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.2e-06 Score=78.29 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=73.9
Q ss_pred CCceEEEEeccccHHHHHHHHh---------------cCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec
Q 021836 157 QHLVALDCGSGIGRITKNLLIR---------------YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~---------------~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 219 (307)
...+|+|+||++|..|..++.. -.. +|...|...+....+-+.+.... . .. ..++..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~----~~-~~~f~~ 124 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-D----VD-GVCFIN 124 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-S----CT-TCEEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-c----cC-CCEEEE
Confidence 4588999999999877744433 112 68899988888887766654321 0 00 112222
Q ss_pred CcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-------------------------------
Q 021836 220 PLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD------------------------------- 268 (307)
Q Consensus 220 d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~------------------------------- 268 (307)
.+. .-.-...++.+++|+|++++++|++.+
T Consensus 125 gvp-------------------gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~ 185 (359)
T 1m6e_X 125 GVP-------------------GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQ 185 (359)
T ss_dssp EEE-------------------SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHH
T ss_pred ecc-------------------hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHH
Confidence 111 000022345789999999999998754
Q ss_pred hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 269 DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 269 ~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.|+..+|+.-++.|+|||.+++.-.
T Consensus 186 ~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 186 EDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp HHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEe
Confidence 2456679999999999999988643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=79.62 Aligned_cols=107 Identities=12% Similarity=-0.094 Sum_probs=67.8
Q ss_pred ceEEEEeccccHHHHHHHHhc----------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 159 LVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~----------------~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.+|+|.+||+|.+...++... ..+++|+|+++.++..|+.++.-.+... .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~-----~--------- 311 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF-----N--------- 311 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC-----B---------
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc-----c---------
Confidence 499999999998877653321 2269999999999999998764322210 0
Q ss_pred cccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhh-------------------------CChh--HHHHHH
Q 021836 223 GQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGH-------------------------LTDD--DFVSFF 275 (307)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-------------------------~~~~--dl~~~l 275 (307)
|.+.+.|..........+||+|+++-.+.. ++.. .--.++
T Consensus 312 -------------i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl 378 (544)
T 3khk_A 312 -------------FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWM 378 (544)
T ss_dssp -------------CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHH
T ss_pred -------------cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHH
Confidence 112233322222223568999998744332 1000 012689
Q ss_pred HHHHHcCCCCcEEEEEe
Q 021836 276 KRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 276 ~~l~~~LkpGG~lii~e 292 (307)
+.+.+.|+|||.++++-
T Consensus 379 ~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 379 LHMLYHLAPTGSMALLL 395 (544)
T ss_dssp HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHhccCceEEEEe
Confidence 99999999999977653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-06 Score=75.57 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=34.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+|||+|||+|..+..++..+. +|+++|+++.+.+.+++++
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l 130 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGL 130 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHH
Confidence 7999999999999997766654 6999999999877776654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-05 Score=75.90 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCceEEEEeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~----~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
++.+|+|.+||+|.+...++... ..+++|+|+++.++..|+.++.-.+.. ...
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~------------------- 277 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IEN------------------- 277 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGG-------------------
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCc-------------------
Confidence 56799999999999887655543 237999999999999999876322210 011
Q ss_pred ccceeeeccCCcCC-CC-CCCCceeeEEcchhhhh-------------------C---ChhHHHHHHHHHHHcCC-CCcE
Q 021836 233 SKKVKIAKKGISAD-FT-PETGRYDVIWVQWCIGH-------------------L---TDDDFVSFFKRAKVGLK-PGGF 287 (307)
Q Consensus 233 ~~~i~~~~~d~~~~-~~-~~~~~fDlIi~~~~l~~-------------------~---~~~dl~~~l~~l~~~Lk-pGG~ 287 (307)
+.+.+.|.... ++ ....+||+|+++-.+.. + .+.+ -.++..+.+.|+ |||.
T Consensus 278 ---~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr 353 (542)
T 3lkd_A 278 ---QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGV 353 (542)
T ss_dssp ---EEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCE
T ss_pred ---cceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCcee
Confidence 22333332222 22 23578999998733211 0 0011 258999999999 9999
Q ss_pred EEEEe
Q 021836 288 FVLKE 292 (307)
Q Consensus 288 lii~e 292 (307)
+.++-
T Consensus 354 ~a~Vl 358 (542)
T 3lkd_A 354 MAIVL 358 (542)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87653
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-05 Score=78.27 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHH--HHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~----~~v~~vD~s~~~l~~A--~~~~ 200 (307)
++.+|||.|||+|.+...++.... .+++|+|+++.+++.| +.++
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL 370 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGL 370 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHH
Confidence 567999999999999987655442 2799999999999999 4444
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.1e-05 Score=72.51 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=73.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+|||+.||+|.=|..++..... .|+++|+++.-+...++++...+..+......+.+...|..
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~----------- 214 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR----------- 214 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG-----------
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh-----------
Confidence 457899999999999998877665443 79999999999988888775443321111122222222222
Q ss_pred cceeeeccCCcCCCC-CCCCceeeEEc----chh---hhh--------CChhH-------HHHHHHHHHHcCCCCcEEEE
Q 021836 234 KKVKIAKKGISADFT-PETGRYDVIWV----QWC---IGH--------LTDDD-------FVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-~~~~~fDlIi~----~~~---l~~--------~~~~d-------l~~~l~~l~~~LkpGG~lii 290 (307)
.+. ...+.||.|++ +.. +.. ....+ ..++|.++.++|||||.|+.
T Consensus 215 ------------~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVY 282 (359)
T 4fzv_A 215 ------------KWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVY 282 (359)
T ss_dssp ------------GHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ------------hcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 111 12568999993 331 110 11111 25788999999999999998
Q ss_pred Eec
Q 021836 291 KEN 293 (307)
Q Consensus 291 ~e~ 293 (307)
+.-
T Consensus 283 sTC 285 (359)
T 4fzv_A 283 STC 285 (359)
T ss_dssp EES
T ss_pred EeC
Confidence 754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0002 Score=63.45 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=24.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPV 189 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s 189 (307)
.+++.+|+|+||++|.++.. +... ...|.|.++.
T Consensus 71 ikpg~~VVDLGaAPGGWSQv-Aa~~~~vg~V~G~vig 106 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYY-AATMKNVQEVRGYTKG 106 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHH-HTTSTTEEEEEEECCC
T ss_pred CCCCCEEEEcCCCCCHHHHH-HhhhcCCCCceeEEEc
Confidence 44789999999999999995 4444 2344565553
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.2e-05 Score=67.66 Aligned_cols=107 Identities=7% Similarity=0.038 Sum_probs=67.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc------CCcEEEEeCCHH--------------------------HHHHHHHHhCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSH--------------------------FLDAARESLAPEN 204 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~------~~~v~~vD~s~~--------------------------~l~~A~~~~~~~~ 204 (307)
.+..|||+|+..|..+..+.... ..+|+++|..+. .++.+++++...+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 45799999999999988654322 247999996432 3455666664433
Q ss_pred CCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHHHHHHHHHHHcCC
Q 021836 205 HMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK 283 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~Lk 283 (307)
+. . .+|++++++..+.++. +.++||+|+.-.-. + ......++.+...|+
T Consensus 186 l~----~----------------------~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y---~~~~~~Le~~~p~L~ 235 (282)
T 2wk1_A 186 LL----D----------------------EQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-Y---ESTWDTLTNLYPKVS 235 (282)
T ss_dssp CC----S----------------------TTEEEEESCHHHHSTTCCCCCEEEEEECCCS-H---HHHHHHHHHHGGGEE
T ss_pred CC----c----------------------CceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-c---ccHHHHHHHHHhhcC
Confidence 21 1 2344444433323322 24689999975432 1 134678999999999
Q ss_pred CCcEEEEEecc
Q 021836 284 PGGFFVLKENI 294 (307)
Q Consensus 284 pGG~lii~e~~ 294 (307)
|||++++ |++
T Consensus 236 pGGiIv~-DD~ 245 (282)
T 2wk1_A 236 VGGYVIV-DDY 245 (282)
T ss_dssp EEEEEEE-SSC
T ss_pred CCEEEEE-cCC
Confidence 9998777 554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=66.23 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=58.5
Q ss_pred CCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|||+||++|.++...+.. ....|.++|+...-- .. ... +-..+. .
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h------------e~---P~~--~~ql~w------------~ 143 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH------------EE---PQL--VQSYGW------------N 143 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS------------CC---CCC--CCBTTG------------G
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc------------cC---cch--hhhcCC------------c
Confidence 46789999999999999954333 334799999854311 00 000 000110 1
Q ss_pred ceeeecc-CCcCCCCCCCCceeeEEcchhhhhCChhH-----HHHHHHHHHHcCCCC-cEEEEE
Q 021836 235 KVKIAKK-GISADFTPETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKVGLKPG-GFFVLK 291 (307)
Q Consensus 235 ~i~~~~~-d~~~~~~~~~~~fDlIi~~~~l~~~~~~d-----l~~~l~~l~~~LkpG-G~lii~ 291 (307)
.|+|.+. |+. .+. +.++|+|+|--. .--+.+. ...+|.-+.+.|++| |-|++.
T Consensus 144 lV~~~~~~Dv~-~l~--~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 144 IVTMKSGVDVF-YRP--SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp GEEEECSCCTT-SSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEeccCHh-hCC--CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 1344443 431 332 266999998543 1111111 133677778899999 888884
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.7e-05 Score=61.98 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=29.5
Q ss_pred CCceEEEEecccc-HHHHHHHH-hcCCcEEEEeCCHHHHH
Q 021836 157 QHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLD 194 (307)
Q Consensus 157 ~~~~ILDiGcGtG-~~t~~ll~-~~~~~v~~vD~s~~~l~ 194 (307)
++.+|||+|||.| ..+..+.. .++ .|+++|+++..++
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~ 73 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG 73 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc
Confidence 4579999999999 69987654 444 5999999986665
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=9.1e-06 Score=92.71 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNK 229 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~------~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (307)
++..+|||||.|+|..+..++... +.+++.+|+|+.+.+.+++++.. .+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~----------------~di~------- 1295 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ----------------LHVT------- 1295 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH----------------HTEE-------
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh----------------cccc-------
Confidence 367899999999998777665543 23799999999888887766531 1111
Q ss_pred ccCccceeeeccCCcCCC-CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 230 KVGSKKVKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 230 ~~~~~~i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
....|.. +. .+..++||+|++.+++|-.. ++...+.+++++|||||++++.+.
T Consensus 1296 --------~~~~d~~-~~~~~~~~~ydlvia~~vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1296 --------QGQWDPA-NPAPGSLGKADLLVCNCALATLG--DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp --------EECCCSS-CCCC-----CCEEEEECC----------------------CCEEEEEEC
T ss_pred --------ccccccc-ccccCCCCceeEEEEcccccccc--cHHHHHHHHHHhcCCCcEEEEEec
Confidence 0000000 10 11346799999999986544 678899999999999999998774
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00057 Score=63.94 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=59.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.++||+||++|.+|..++.+. .+|++||+.+ |-..... . .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~-l~~~l~~------------~----------------------~ 252 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP-MAQSLMD------------T----------------------G 252 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC-CCHHHHT------------T----------------------T
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh-cChhhcc------------C----------------------C
Confidence 3478999999999999999766554 4799999753 2111110 1 1
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+|++.+.|.. .+.++.++||+|+|-.+.. ......++..+...+..++.++...
T Consensus 253 ~V~~~~~d~~-~~~~~~~~~D~vvsDm~~~---p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 253 QVTWLREDGF-KFRPTRSNISWMVCDMVEK---PAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp CEEEECSCTT-TCCCCSSCEEEEEECCSSC---HHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred CeEEEeCccc-cccCCCCCcCEEEEcCCCC---hHHhHHHHHHHHhccccceEEEEEE
Confidence 2334444433 4444467899999976542 2234455555555555556655443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0016 Score=57.00 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=59.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..+..+|+|+||++|.++...+.. ...+|.++|+...--+.= .....+ +-
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~----------------------------gw 126 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTY----------------------------GW 126 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCT----------------------------TT
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhc----------------------------Cc
Confidence 347789999999999999954433 334899999854211000 000011 11
Q ss_pred cceeeecc-CCcCCCCCCCCceeeEEcchhhhhCCh----hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKK-GISADFTPETGRYDVIWVQWCIGHLTD----DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~-d~~~~~~~~~~~fDlIi~~~~l~~~~~----~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
..|+|.+. |+. ... +.++|+|+|-..-..-.. .....+|+-+.+.|++ |.|++.
T Consensus 127 n~v~fk~gvDv~-~~~--~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 127 NIVKLMSGKDVF-YLP--PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp TSEEEECSCCGG-GCC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred CceEEEecccee-ecC--CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 23455555 442 232 367999998543211111 1113367777899999 788874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00065 Score=61.52 Aligned_cols=57 Identities=21% Similarity=0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++..++.... .++..|||++||+|.++..+ .....+++|+|+++.+++.|++++.
T Consensus 222 ~~l~~~~i~~~~-----~~~~~vlD~f~GsGt~~~~a-~~~g~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 222 LELAERLVRMFS-----FVGDVVLDPFAGTGTTLIAA-ARWGRRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp HHHHHHHHHHHC-----CTTCEEEETTCTTTHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 455555554321 26789999999999999964 4445579999999999999998874
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00093 Score=60.18 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=45.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (307)
.++..++|++||.|..|..++.. ..+|+|+|.++.+++.|++ +.. .++.++..++.
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~ 76 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFR 76 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcc
Confidence 36789999999999999988877 4589999999999999998 643 23556565554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.008 Score=58.91 Aligned_cols=46 Identities=15% Similarity=-0.044 Sum_probs=35.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHHHh
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--------------~~~v~~vD~s~~~l~~A~~~~ 200 (307)
+.++.+|+|-+||+|.+........ -..++|+|+++.+...|+-++
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 3456799999999999877544321 125999999999999998665
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.01 Score=55.57 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=38.6
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+++|+-||.|.++..+...++..+.++|+++..++..+.++.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~ 45 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP 45 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC
Confidence 5899999999999998888888888999999999999888764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.006 Score=53.99 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
+..++..++.... .++..|||..||+|.++.. +.....+++|+|+++.+++.+++++..
T Consensus 198 p~~l~~~~i~~~~-----~~~~~vlD~f~GsGtt~~~-a~~~gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 198 PRDLIERIIRASS-----NPNDLVLDCFMGSGTTAIV-AKKLGRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp CHHHHHHHHHHHC-----CTTCEEEESSCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHH-HHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 3456666654322 3678999999999999996 444556899999999999999998754
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.035 Score=51.15 Aligned_cols=131 Identities=7% Similarity=0.077 Sum_probs=77.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+...|+.+|||.......+...... .++-||. |.+++.-++.+...+.. ...+..+..............+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l-------~~~l~~~~~~~~~~~~~~~~~~ 168 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEIL-------RISLGLSKEDTAKSPFLIDQGR 168 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHH-------HHHHTCCSSCCCCTTEEEECSS
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccch-------hhhcccccccccccccccCCCc
Confidence 4578999999999998887655333 4566666 77777766665432100 0000000000000000001123
Q ss_pred eeeeccCCcC-CC-------CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISA-DF-------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~-~~-------~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.+++.+|+.. ++ ....+...++++-.++.|++.+....+++.+.+.. |+|.+++.|.+.+
T Consensus 169 ~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 169 YKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp EEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 4444444432 11 11235678889989999999999999999999987 7888888887665
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.019 Score=53.07 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=38.6
Q ss_pred CceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhC
Q 021836 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+++|+-||.|.++..+...+ +..|.++|+++.+++..+.++.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence 3689999999999999887777 4579999999999999998874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=53.15 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=69.8
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+..+||+=+|+|.++...++. ..+++.+|.++..++..++++.. ...+.++..|.. +
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~--------------~ 148 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGV--------------S 148 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHH--------------H
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHH--------------H
Confidence 456899999999999998774 47899999999999999888743 122333333321 0
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii~e~ 293 (307)
.. ..+.++..+||+|++--.... +.+...+++.+.+ .+.|+|++++-=.
T Consensus 149 ~L-----~~l~~~~~~fdLVfiDPPYe~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 149 KL-----NALLPPPEKRGLIFIDPSYER--KEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp HH-----HHHCSCTTSCEEEEECCCCCS--TTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HH-----HHhcCCCCCccEEEECCCCCC--CcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 00 012233457999998655322 1255666666655 4578998887443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.059 Score=49.42 Aligned_cols=45 Identities=16% Similarity=-0.075 Sum_probs=40.2
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
..+++|+.||.|.++..+...++..+.++|+++..++..+.++..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~ 55 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE 55 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC
Confidence 478999999999999988778888899999999999999988753
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.027 Score=52.35 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=37.9
Q ss_pred CceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHh
Q 021836 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~ 200 (307)
+..|||||.|.|.+|..++... ..+|+++|+++.++...++..
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence 5789999999999999988753 568999999999999998775
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.089 Score=47.55 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCceeeEEcch---hhhhCChh------HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 251 TGRYDVIWVQW---CIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 251 ~~~fDlIi~~~---~l~~~~~~------dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.++||+|++-. .-.+.+.+ -.+.++.-+.+.|+|||.|++.-
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 47899999642 22222111 13556777888999999999963
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.08 Score=48.55 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred CCceEEEEeccccHHHHHHHHhcC--CcE-EEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~--~~v-~~vD~s~~~l~~A~~~~~ 201 (307)
...+++|+-||.|.++..+...++ ..+ .++|+++...+..+.++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~ 56 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK 56 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC
Confidence 457999999999999998766664 556 799999999999988875
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.45 Score=43.15 Aligned_cols=118 Identities=10% Similarity=-0.046 Sum_probs=71.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKI 238 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~ 238 (307)
..|+++|||.=.....+......+++-+| .|..++..++.+.+.+.. ......++..|+.. .+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~---~~~~~~~v~~Dl~d--~~----------- 166 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVT---PTADRREVPIDLRQ--DW----------- 166 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCC---CSSEEEEEECCTTS--CH-----------
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCC---CCCCeEEEecchHh--hH-----------
Confidence 46999999987776543211112688889 588998888877532211 02223344444431 00
Q ss_pred eccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 239 AKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 239 ~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
... +. ...+..+.-=++++-.+++|+++++...+++.+...+.||+.+++ |.+..
T Consensus 167 ~~~-l~-~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~ 221 (310)
T 2uyo_A 167 PPA-LR-SAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPL 221 (310)
T ss_dssp HHH-HH-HTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCT
T ss_pred HHH-HH-hccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCC
Confidence 000 00 000112234567777889999998899999999999999888777 55443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.11 Score=47.92 Aligned_cols=101 Identities=14% Similarity=-0.010 Sum_probs=62.0
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-+|||. |..+..+++.... +|+++|.++.-++.+++.-.. ..++....++. .+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~-----~~--- 250 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT---------HVINSKTQDPV-----AA--- 250 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS---------EEEETTTSCHH-----HH---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC---------EEecCCccCHH-----HH---
Confidence 45678999999876 7777766554443 699999999999988754211 00000000000 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+ .... .+.+|+|+-.-.- ...+..+.+.|+|||.+++.-.
T Consensus 251 ----------~-~~~~--~gg~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 251 ----------I-KEIT--DGGVNFALESTGS--------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp ----------H-HHHT--TSCEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred ----------H-HHhc--CCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence 0 0111 2379999854321 3457888999999999988654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.3 Score=44.14 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=37.3
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++|+|+=||.|.++..+-..++.-+.++|+++.+.+.-+.+..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~ 43 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS 43 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC
Confidence 4799999999999998777788888999999999998888763
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.088 Score=43.82 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=58.5
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||..|+ |.|..+..++.....+|+++|.+++.++.+++. +. . . ..+....+
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~-----~----~-~~d~~~~~------- 94 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV-----E----Y-VGDSRSVD------- 94 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC-----S----E-EEETTCST-------
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC-----C----E-EeeCCcHH-------
Confidence 346789999994 556666655554444799999999888776542 11 0 0 11111000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+ .+. ... ....+|+++.+-. ...++.+.+.|+|||.+++.-.
T Consensus 95 -----~~~-~~~-~~~-~~~~~D~vi~~~g---------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 95 -----FAD-EIL-ELT-DGYGVDVVLNSLA---------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp -----HHH-HHH-HHT-TTCCEEEEEECCC---------THHHHHHHHTEEEEEEEEECSC
T ss_pred -----HHH-HHH-HHh-CCCCCeEEEECCc---------hHHHHHHHHHhccCCEEEEEcC
Confidence 000 000 111 1246999986432 1346788899999999988654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.35 Score=42.77 Aligned_cols=56 Identities=4% Similarity=0.140 Sum_probs=37.7
Q ss_pred cceeeeccCCcCCCC-----CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 234 KKVKIAKKGISADFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~-----~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+|++++++....++ .+..+||+|+.-.-. + ......++.+...|+|||++++ |+.
T Consensus 158 ~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv~-DD~ 218 (257)
T 3tos_A 158 QRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVAF-DEL 218 (257)
T ss_dssp CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEEE-SST
T ss_pred CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEEE-cCC
Confidence 567777776544332 124579999975432 1 1346678899999999999987 444
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.16 Score=46.73 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAAR 197 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~ 197 (307)
+.++..++|..||.|..+..++.... .+|+|+|.++.+++.++
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34778999999999999998877643 38999999999999984
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.32 Score=43.80 Aligned_cols=46 Identities=11% Similarity=-0.133 Sum_probs=38.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~--v~~vD~s~~~l~~A~~~~~ 201 (307)
....+++|+=||.|.++..+...++.. |.++|+++...+.-+.+..
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~ 61 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ 61 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC
Confidence 356899999999999999877777774 7999999999888777753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.2 Score=45.99 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=37.7
Q ss_pred CceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..+++|+-||.|.++..+...++ ..|.++|+++...+.-+.++.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~ 48 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP 48 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC
Confidence 36899999999999998766676 468999999999999888874
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.06 E-value=0.22 Score=46.91 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCCceEEEEeccccHHHHHHHH-hcC--CcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLI-RYF--NEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~-~~~--~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.++..++|+||+.|..+..++. ... .+|+++|+++...+..++++..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4778999999999999997663 332 4899999999999999887754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.2 Score=45.54 Aligned_cols=99 Identities=18% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+++...+.. .+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~-----~~---- 225 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE---------VAVNARDTDPA-----AW---- 225 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS---------EEEETTTSCHH-----HH----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC---------EEEeCCCcCHH-----HH----
Confidence 45778899999875 7777776665555899999999999988764211 00100000000 00
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. . ..+.+|+|+.... . ...++.+.+.|+|||.+++.-
T Consensus 226 ---------~~-~---~~g~~d~vid~~g----~----~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 226 ---------LQ-K---EIGGAHGVLVTAV----S----PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ---------HH-H---HHSSEEEEEESSC----C----HHHHHHHHHHEEEEEEEEECS
T ss_pred ---------HH-H---hCCCCCEEEEeCC----C----HHHHHHHHHHhccCCEEEEeC
Confidence 00 1 1236898875421 1 345778889999999998864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.68 Score=42.62 Aligned_cols=104 Identities=18% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||=+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+++...+.. .
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~-----~---- 241 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT---------ATVDPSAGDVV-----E---- 241 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---------EEECTTSSCHH-----H----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---------EEECCCCcCHH-----H----
Confidence 34678899999865 6666665554443 899999999999888764321 01111001100 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+. +.. .+ ..+.+|+|+-.-. -...+..+.+.|++||.+++...
T Consensus 242 -----~i~-~~~-~~--~~gg~Dvvid~~G--------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 242 -----AIA-GPV-GL--VPGGVDVVIECAG--------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp -----HHH-STT-SS--STTCEEEEEECSC--------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred -----HHH-hhh-hc--cCCCCCEEEECCC--------CHHHHHHHHHHhccCCEEEEEec
Confidence 000 000 02 1347999985421 13457788899999999998654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.35 Score=43.96 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=44.6
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.++..++... .+++..|||.-||+|..+.. +.....+.+|+|+++.+++.+++++...
T Consensus 240 ~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~a-a~~~gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 240 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLV-AERESRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 4555555422 23678999999999999985 4455568999999999999999998654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.33 Score=44.37 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 215 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 215 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 44678999999875 6777766555444 799999999988888753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.22 Score=45.16 Aligned_cols=102 Identities=7% Similarity=0.037 Sum_probs=61.3
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.|| |.|..+..++.....+|++++.++.-++.+++.+... . . .+....+.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~--------~---~--~d~~~~~~------ 213 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD--------D---A--FNYKEESD------ 213 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS--------E---E--EETTSCSC------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc--------e---E--EecCCHHH------
Confidence 446789999997 5677777666554458999999998888876443210 0 1 11110000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+ .... .+.+|+|+.+-. . ..+..+.+.|++||.+++.-.
T Consensus 214 -----~~~-~~-~~~~--~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 214 -----LTA-AL-KRCF--PNGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp -----SHH-HH-HHHC--TTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred -----HHH-HH-HHHh--CCCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEEcc
Confidence 000 00 0111 246999986532 1 257788899999999988643
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.16 E-value=0.51 Score=45.51 Aligned_cols=44 Identities=18% Similarity=0.010 Sum_probs=38.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
...+++|+=||.|.++..+-..++..|.++|+++...+.-+.++
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence 45899999999999999876667777999999999998888776
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.37 Score=44.83 Aligned_cols=44 Identities=14% Similarity=-0.056 Sum_probs=34.5
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-+|||. |..+..+++.... +|+++|.++..++.+++
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 45778999999976 7777766655444 89999999998888864
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.2 Score=45.54 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=33.3
Q ss_pred eeeeccCCcCCCCC-CCCceeeEEcchhhhhCChhHH--HHHHHHHHHcCCCCcEEEE
Q 021836 236 VKIAKKGISADFTP-ETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 236 i~~~~~d~~~~~~~-~~~~fDlIi~~~~l~~~~~~dl--~~~l~~l~~~LkpGG~lii 290 (307)
+++.-+|..+.++. +...||+|+.-. +.--..+++ .++++.+++.++|||.|+-
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 44555554433321 245799999642 111112232 7899999999999999874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.68 Score=41.71 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=59.9
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++ +.. . . ..+....+.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~--------~----~-~~d~~~~~~------ 202 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGF--------D----A-AFNYKTVNS------ 202 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC--------S----E-EEETTSCSC------
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCC--------c----E-EEecCCHHH------
Confidence 446789999997 66666666655544489999999988888743 311 0 0 111110000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+ .... .+.+|+++.+-. ...+..+.+.|++||.+++...
T Consensus 203 -----~~~-~~-~~~~--~~~~d~vi~~~g---------~~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 203 -----LEE-AL-KKAS--PDGYDCYFDNVG---------GEFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp -----HHH-HH-HHHC--TTCEEEEEESSC---------HHHHHHHHTTEEEEEEEEECCC
T ss_pred -----HHH-HH-HHHh--CCCCeEEEECCC---------hHHHHHHHHHHhcCCEEEEEec
Confidence 000 00 0111 247999986543 1236778899999999988654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.31 Score=44.52 Aligned_cols=102 Identities=19% Similarity=0.052 Sum_probs=61.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||=+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+++...++. .+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~-----~~--- 226 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT---------DIINYKNGDIV-----EQ--- 226 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC---------EEECGGGSCHH-----HH---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------eEEcCCCcCHH-----HH---
Confidence 44678899999865 6666665554443 799999999988888765321 01111001110 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+ .... ....+|+|+-.-. . ...+..+.+.|+|||.+++.-.
T Consensus 227 ----------v-~~~t-~g~g~D~v~d~~g-----~---~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 227 ----------I-LKAT-DGKGVDKVVIAGG-----D---VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp ----------H-HHHT-TTCCEEEEEECSS-----C---TTHHHHHHHHEEEEEEEEECCC
T ss_pred ----------H-HHHc-CCCCCCEEEECCC-----C---hHHHHHHHHHHhcCCEEEEecc
Confidence 0 0111 1346999985322 1 2356778889999999998654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=1.2 Score=40.48 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=33.4
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l 211 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC 211 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh
Confidence 44678999999864 6666665554444699999999998888753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.29 Score=44.26 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=61.3
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+.+.+... ..+...-. +
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~--~------- 206 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD-----------GAIDYKNE--D------- 206 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS-----------EEEETTTS--C-------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC-----------EEEECCCH--H-------
Confidence 447789999998 5677777666555558999999998888874333210 01111000 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+ .... .+.+|+|+.+-. ...+..+.+.|++||.+++.-.
T Consensus 207 -----~~~-~~-~~~~--~~~~d~vi~~~g---------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 207 -----LAA-GL-KREC--PKGIDVFFDNVG---------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp -----HHH-HH-HHHC--TTCEEEEEESSC---------HHHHHHHHTTEEEEEEEEECCC
T ss_pred -----HHH-HH-HHhc--CCCceEEEECCC---------cchHHHHHHHHhhCCEEEEEee
Confidence 000 00 0111 347999986432 1357788899999999998644
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.25 Score=45.02 Aligned_cols=97 Identities=14% Similarity=-0.065 Sum_probs=59.8
Q ss_pred CCceEEEEeccc-cHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee-cCcccccccccccC
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQGQREKNKKVG 232 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 232 (307)
++.+||-+|+|. |..+..+++.. ..+|++++.++.-++.+++.-.. ..+++.. .+..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~---------- 230 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD---------YVSEMKDAESLI---------- 230 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS---------EEECHHHHHHHH----------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC---------EEeccccchHHH----------
Confidence 567999999864 66666666555 44799999999998888764211 0111100 0000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+. ....+|+|+-.-.- ...++.+.+.|+|||.+++.-.
T Consensus 231 ------------~~~~-~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 231 ------------NKLT-DGLGASIAIDLVGT--------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp ------------HHHH-TTCCEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ------------HHhh-cCCCccEEEECCCC--------hHHHHHHHHHhhcCCEEEEeCC
Confidence 0111 12379999864321 2357788899999999988643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.24 Score=45.02 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=35.1
Q ss_pred CCCCceEEEEecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcG--tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+| .|..+..++.....+|++++.++.-++.+++.
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l 188 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL 188 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence 4577899999986 67777766665555899999999888888764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.34 Score=44.11 Aligned_cols=92 Identities=15% Similarity=0.020 Sum_probs=60.0
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.-.. ..+ .+.+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~-~~~~----------- 229 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK------------HFY-TDPK----------- 229 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS------------EEE-SSGG-----------
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC------------eec-CCHH-----------
Confidence 45778999999865 6666666555445899999999988888763211 111 1111
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+ ...+|+|+-.-.- ...+..+.+.|+|+|.+++.-.
T Consensus 230 ------------~~---~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 230 ------------QC---KEELDFIISTIPT--------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ------------GC---CSCEEEEEECCCS--------CCCHHHHHTTEEEEEEEEECCC
T ss_pred ------------HH---hcCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEECC
Confidence 22 1279999853221 1236678889999999998744
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.27 Score=45.14 Aligned_cols=102 Identities=13% Similarity=-0.064 Sum_probs=61.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.-.. ..+..+.. +
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~--~-------- 244 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------------HGINRLEE--D-------- 244 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTS--C--------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------------EEEcCCcc--c--------
Confidence 45778999999765 6666665555545899999999988888764211 01111000 0
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+.. .+. ... ....+|+|+-+-. . ..+..+.+.|+|||.+++....
T Consensus 245 ----~~~-~v~-~~~-~g~g~D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 245 ----WVE-RVY-ALT-GDRGADHILEIAG----G-----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp ----HHH-HHH-HHH-TTCCEEEEEEETT----S-----SCHHHHHHHEEEEEEEEEECCC
T ss_pred ----HHH-HHH-HHh-CCCCceEEEECCC----h-----HHHHHHHHHhhcCCEEEEEecC
Confidence 000 000 111 1347999986432 1 2356677899999999987543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.59 Score=42.72 Aligned_cols=105 Identities=21% Similarity=0.050 Sum_probs=61.5
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecC-ccccccccccc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~ 231 (307)
..++.+||=+|+|. |..+..+++.... .|+++|.++.-++.+++. ... .+.+ ..+ ....+...+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------~~~~-~~~~~~~~~~~~~-- 243 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------VVTH-KVERLSAEESAKK-- 243 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------CEEE-ECCSCCHHHHHHH--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------cccc-cccccchHHHHHH--
Confidence 44678899999865 6666665554443 599999999999999876 321 1111 100 000000000
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. ... ....+|+|+-.-. . ...+..+.+.|++||.+++.-.
T Consensus 244 -----------v~-~~t-~g~g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 244 -----------IV-ESF-GGIEPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp -----------HH-HHT-SSCCCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECCC
T ss_pred -----------HH-HHh-CCCCCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEcc
Confidence 00 111 1347999986422 1 2357788899999999998643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.49 E-value=0.51 Score=42.89 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH---HHHHHHHHHhCCC
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE 203 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~---~~l~~A~~~~~~~ 203 (307)
.+..++..++... .+++..|||.=||+|..+... .....+.+|+|+++ .+++.+++++...
T Consensus 227 kp~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa-~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 227 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVA-IQEGRNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHH-HHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHH-HHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 3445666666532 236789999999999999854 44455799999999 9999999998643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.46 Score=42.93 Aligned_cols=101 Identities=21% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-+|+ |.|..+..++.....+|++++.++.-++.+++.-.. . .+...-. +
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~---------~---~~~~~~~--~------- 204 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE---------Y---LINASKE--D------- 204 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS---------E---EEETTTS--C-------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------E---EEeCCCc--h-------
Confidence 457789999994 566777766655555899999999988887653210 0 1111000 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+. ... ....+|+|+.+-.- ..++.+.+.|++||.+++.-.
T Consensus 205 -----~~~-~~~-~~~-~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 205 -----ILR-QVL-KFT-NGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp -----HHH-HHH-HHT-TTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred -----HHH-HHH-HHh-CCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEcC
Confidence 000 000 111 13469999864331 236677889999999998654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.80 E-value=0.32 Score=44.93 Aligned_cols=45 Identities=16% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l 237 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL 237 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 44678999999874 6666665555444799999999988888753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.53 E-value=1.2 Score=41.23 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=34.1
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|||. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l 229 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ 229 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc
Confidence 44678999999865 6777766555443 799999999999988653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=1.1 Score=40.95 Aligned_cols=45 Identities=13% Similarity=-0.141 Sum_probs=33.1
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l 234 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 234 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 45678999999764 5666655554443 799999999988888754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.49 E-value=0.86 Score=41.83 Aligned_cols=45 Identities=9% Similarity=-0.102 Sum_probs=33.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l 236 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 236 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh
Confidence 45678999999764 6666655554443 799999999988888753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=87.45 E-value=1 Score=41.29 Aligned_cols=44 Identities=11% Similarity=-0.190 Sum_probs=32.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 45678999999864 5666655554443 79999999998888875
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.39 E-value=0.77 Score=42.25 Aligned_cols=101 Identities=19% Similarity=0.044 Sum_probs=60.5
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee--cCcccccccccc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQGQREKNKK 230 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~ 230 (307)
..++.+||=+|+|. |..+..+++... .+|+++|.++.-++.+++.-.. ..+++.. .++. .+
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~-----~~- 255 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN---------EFVNPKDHDKPIQ-----EV- 255 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC---------EEECGGGCSSCHH-----HH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------EEEccccCchhHH-----HH-
Confidence 45778899999863 666666555444 3799999999988888653211 1111100 0000 00
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC-cEEEEEec
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 293 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG-G~lii~e~ 293 (307)
+ .... .+.+|+|+-.-. -...+..+.+.|++| |.+++.-.
T Consensus 256 ------------i-~~~~--~gg~D~vid~~g--------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 256 ------------I-VDLT--DGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ------------H-HHHT--TSCBSEEEECSC--------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ------------H-HHhc--CCCCCEEEECCC--------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 0 0111 237999985422 134578888999997 99988654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=87.06 E-value=0.21 Score=50.19 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=65.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc-----------CC--cEEEEeC---CHHHHHHHHHHh-----------CCCCCCCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-----------FN--EVDLLEP---VSHFLDAARESL-----------APENHMAPD 209 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-----------~~--~v~~vD~---s~~~l~~A~~~~-----------~~~~~~~~~ 209 (307)
+..+|+|+|-|+|.....++... .. +++.+|. +...+..+-..+ ..+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~--- 134 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLP--- 134 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCC---
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCccc---
Confidence 45799999999998877655532 11 5899998 444444332211 111100
Q ss_pred cccccceeecCcccccccccccCccceeeeccCCcCCCCCC----CCceeeEEcchh-hhhCChhHHHHHHHHHHHcCCC
Q 021836 210 MHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE----TGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKP 284 (307)
Q Consensus 210 ~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~fDlIi~~~~-l~~~~~~dl~~~l~~l~~~Lkp 284 (307)
...+....++ .+.-+++++-+|..+.++.- .+.+|.|+.-.. -..-++---..++..+.+.++|
T Consensus 135 ---~~~~~r~~~~--------~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~ 203 (689)
T 3pvc_A 135 ---LAGCHRILLA--------DGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP 203 (689)
T ss_dssp ---CSEEEEEEET--------TTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE
T ss_pred ---CCCceEEEec--------CCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC
Confidence 0001011111 12345667777665444321 468999997421 1111110127789999999999
Q ss_pred CcEEEE
Q 021836 285 GGFFVL 290 (307)
Q Consensus 285 GG~lii 290 (307)
||.+.-
T Consensus 204 g~~~~t 209 (689)
T 3pvc_A 204 GGTFST 209 (689)
T ss_dssp EEEEEE
T ss_pred CCEEEe
Confidence 998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=1.1 Score=40.60 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCCceEEEEecc--ccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcG--tG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
..++.+||-.|+| .|..+..++... ..+|+++|.++..++.+++.-.. .. .+....+
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~--~~~~~~~------ 227 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YV--INASMQD------ 227 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EE--EETTTSC------
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC------------EE--ecCCCcc------
Confidence 4467899999987 556666666554 44799999999988888653210 01 1111000
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+ .... ..+.+|+|+.+-.- ...++.+.+.|+|+|.+++.-.
T Consensus 228 ------~~~-~~-~~~~-~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 228 ------PLA-EI-RRIT-ESKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp ------HHH-HH-HHHT-TTSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECCS
T ss_pred ------HHH-HH-HHHh-cCCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEECC
Confidence 000 00 0111 11479999864321 2356778899999999988644
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=0.84 Score=41.37 Aligned_cols=101 Identities=17% Similarity=0.051 Sum_probs=62.0
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-+|+|. |..+..+++.. ..+|+++|.++.-++.+++.-.. ..++. ..+.. .+
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~---------~~i~~-~~~~~-----~~--- 230 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD---------AAVKS-GAGAA-----DA--- 230 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS---------EEEEC-STTHH-----HH---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---------EEEcC-CCcHH-----HH---
Confidence 34678899999865 66777666554 55899999999999988764211 01110 00000 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. ... ....+|+|+-.-. . ...++.+.+.|++||.+++.-.
T Consensus 231 ----------v~-~~t-~g~g~d~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 231 ----------IR-ELT-GGQGATAVFDFVG-----A---QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp ----------HH-HHH-GGGCEEEEEESSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred ----------HH-HHh-CCCCCeEEEECCC-----C---HHHHHHHHHHHhcCCEEEEECC
Confidence 00 110 1236999985322 1 3467888899999999998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.94 E-value=2.1 Score=39.20 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCceEEEEe-c-cccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCG-S-GIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiG-c-GtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+||=+| + |.|..+..+++. ...+|++++.++.-++.+++.-.. ..++. ..+.. .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad---------~vi~~-~~~~~-----~----- 230 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH---------HVIDH-SKPLA-----A----- 230 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS---------EEECT-TSCHH-----H-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC---------EEEeC-CCCHH-----H-----
Confidence 567899888 3 457777776665 355899999999988888653211 01110 00000 0
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .. ..+.+|+|+-+-. -...+..+.+.|+|+|.+++..
T Consensus 231 --------~v~-~~--~~~g~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 231 --------EVA-AL--GLGAPAFVFSTTH--------TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp --------HHH-TT--CSCCEEEEEECSC--------HHHHHHHHHHHSCTTCEEEECS
T ss_pred --------HHH-Hh--cCCCceEEEECCC--------chhhHHHHHHHhcCCCEEEEEC
Confidence 000 12 2457999986322 1345788889999999999873
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=0.87 Score=41.35 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+||-+|+|. |..+..++..... +|++++.++.-++.+++.-.. ..++....++. .+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~---------~~~~~~~~~~~-----~~----- 227 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD---------YVINPFEEDVV-----KE----- 227 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS---------EEECTTTSCHH-----HH-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEECCCCcCHH-----HH-----
Confidence 678999999853 5666655554444 799999999988888754211 00000000000 00
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+ .... ....+|+|+..-.. ...++.+.+.|+++|.+++.-.
T Consensus 228 --------v-~~~~-~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 228 --------V-MDIT-DGNGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp --------H-HHHT-TTSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred --------H-HHHc-CCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEcc
Confidence 0 0111 12369999864321 2456778889999999988644
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=1 Score=44.88 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=66.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc-----------CC--cEEEEeC---CHHHHHHHHHHhCC-----------CCCCCcc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-----------FN--EVDLLEP---VSHFLDAARESLAP-----------ENHMAPD 209 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-----------~~--~v~~vD~---s~~~l~~A~~~~~~-----------~~~~~~~ 209 (307)
+..+|||+|-|+|......+... .. +++++|. +.+.+..+-..+.+ +...
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~--- 142 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMP--- 142 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCC---
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCccc---
Confidence 45799999999998777554432 11 5899998 77777644332211 1000
Q ss_pred cccccceeecCcccccccccccCccceeeeccCCcCCCCCC----CCceeeEEcchhhhhCChhH--HHHHHHHHHHcCC
Q 021836 210 MHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPE----TGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLK 283 (307)
Q Consensus 210 ~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~Lk 283 (307)
...++...++ .+..++++...|..+.++.- ...||+|+.-.. .--.+++ -..+++.+.+.++
T Consensus 143 ---~~~~~~~~~~--------~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-~p~~np~~w~~~~~~~l~~~~~ 210 (676)
T 3ps9_A 143 ---LPGCHRLLLD--------AGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-APAKNPDMWTQNLFNAMARLAR 210 (676)
T ss_dssp ---CSEEEEEEEG--------GGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-CGGGCGGGSCHHHHHHHHHHEE
T ss_pred ---CCCceEEEec--------CCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-CCcCChhhhhHHHHHHHHHHhC
Confidence 0000011010 11234555555554333211 367999997321 1101112 2788999999999
Q ss_pred CCcEEEE
Q 021836 284 PGGFFVL 290 (307)
Q Consensus 284 pGG~lii 290 (307)
|||.+..
T Consensus 211 ~g~~~~t 217 (676)
T 3ps9_A 211 PGGTLAT 217 (676)
T ss_dssp EEEEEEE
T ss_pred CCCEEEe
Confidence 9999865
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.71 E-value=0.74 Score=41.34 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=59.7
Q ss_pred CCCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.| +|.|..+..++.....+|++++.++..++.+++.-.. . ..+....+
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~-------------~-~~~~~~~~------- 196 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-------------Q-VINYREED------- 196 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-------------E-EEETTTSC-------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC-------------E-EEECCCcc-------
Confidence 44678999999 4666666666555444899999999888888653110 0 11111000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+. ... ....+|+++.+-. ...++.+.+.|++||.+++.-.
T Consensus 197 -----~~~-~~~-~~~-~~~~~D~vi~~~g---------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 197 -----LVE-RLK-EIT-GGKKVRVVYDSVG---------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp -----HHH-HHH-HHT-TTCCEEEEEECSC---------GGGHHHHHHTEEEEEEEEECCC
T ss_pred -----HHH-HHH-HHh-CCCCceEEEECCc---------hHHHHHHHHHhcCCCEEEEEec
Confidence 000 000 111 1246999986532 1236778889999999988654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=86.67 E-value=1.5 Score=39.70 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=33.0
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-+|+| .|..+..++.....+|++++.++.-++.+++
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 206 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE 206 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3467899999985 4666665555544489999999998888865
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.5 Score=42.94 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=60.3
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-+|+ |.|..+..++.....+|++++.++..++.+++. .. . .. .+....+.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~-g~--------~---~~--~d~~~~~~------ 226 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI-GG--------E---VF--IDFTKEKD------ 226 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT-TC--------C---EE--EETTTCSC------
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc-CC--------c---eE--EecCccHh------
Confidence 446789999998 567777666655445899999998888777652 11 0 01 11110000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+... + .... .+.+|+|+.+-.. ...++.+.+.|+++|.+++...
T Consensus 227 -----~~~~-~-~~~~--~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 227 -----IVGA-V-LKAT--DGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp -----HHHH-H-HHHH--TSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred -----HHHH-H-HHHh--CCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence 0000 0 0111 1269999865321 2457888899999999987644
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=86.40 E-value=0.25 Score=44.29 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=34.5
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchhhhhCC--------------h----hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWCIGHLT--------------D----DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~--------------~----~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++++++|..+.+. .++++||+|+++-...... . ..+..+++.+.++|||||.+++.
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3455555443221 2357899999864321110 0 12456788999999999998774
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=0.56 Score=42.20 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.| +|.|..+..++.....+|++++.++.-++.+++.-.. . .+...-. +
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~---------~---~~~~~~~--~------- 196 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW---------E---TIDYSHE--D------- 196 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS---------E---EEETTTS--C-------
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC---------E---EEeCCCc--c-------
Confidence 45778999998 3567777766655545899999999988888754211 0 1111000 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+. ... ....+|+|+.+-.- ..+..+.+.|++||.+++.-.
T Consensus 197 -----~~~-~~~-~~~-~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 197 -----VAK-RVL-ELT-DGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp -----HHH-HHH-HHT-TTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred -----HHH-HHH-HHh-CCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence 000 000 111 13479999864321 246677889999999998754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=86.15 E-value=1.2 Score=40.93 Aligned_cols=44 Identities=14% Similarity=-0.119 Sum_probs=32.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 44678999999865 6666655554443 79999999998888864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.96 E-value=2.4 Score=38.60 Aligned_cols=44 Identities=11% Similarity=-0.021 Sum_probs=33.0
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 213 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 213 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 446789999996 56666666665554589999999988887754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=1.2 Score=40.81 Aligned_cols=45 Identities=9% Similarity=-0.138 Sum_probs=33.1
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 239 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999864 5666655555444 799999999988888653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.71 E-value=4.4 Score=37.51 Aligned_cols=45 Identities=22% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||=+|+|. |..+..+++.... +|+++|.++.-++.+++.
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 45778899998854 5566655554443 899999999999988765
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=85.10 E-value=1.8 Score=44.01 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHHHhCC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~------~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
++..+|+|+=||.|.++.-+-..+ +.-+.++|+++.+++.-+.+...
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~ 262 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ 262 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC
Confidence 356899999999999998765554 55789999999999988888643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.95 E-value=0.61 Score=42.37 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=60.1
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++.-.. . .+... . +...+
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~---------~---v~~~~-~--~~~~~--- 218 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD---------I---VLPLE-E--GWAKA--- 218 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS---------E---EEESS-T--THHHH---
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc---------E---EecCc-h--hHHHH---
Confidence 457789999997 567777766665555899999999888888764211 0 11111 1 00000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. ... ....+|+|+.+-.- ..+..+.+.|++||.+++.-.
T Consensus 219 ----------v~-~~~-~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 219 ----------VR-EAT-GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp ----------HH-HHT-TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC--
T ss_pred ----------HH-HHh-CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEEc
Confidence 00 111 12369999864321 146778889999999998643
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.78 E-value=2.2 Score=38.58 Aligned_cols=44 Identities=11% Similarity=-0.033 Sum_probs=34.7
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~ 209 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA 209 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 456789999998 67777776666554589999999998888865
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.70 E-value=0.76 Score=41.42 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=33.6
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~ 188 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK 188 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 446789999995 66777776666554589999999988888765
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=1 Score=41.05 Aligned_cols=45 Identities=13% Similarity=-0.071 Sum_probs=33.4
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++.
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ 206 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL 206 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc
Confidence 456789999984 566666666655545899999999988888543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=1.1 Score=40.90 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=59.3
Q ss_pred CCC--ceEEEEec--cccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccc
Q 021836 156 NQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKK 230 (307)
Q Consensus 156 ~~~--~~ILDiGc--GtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (307)
.++ .+||-.|+ |.|..+..++..... +|++++.++.-++.+++.+... . ..+....+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~------------~-~~d~~~~~----- 218 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD------------A-AINYKKDN----- 218 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS------------E-EEETTTSC-----
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc------------e-EEecCchH-----
Confidence 356 78999997 556666655555544 8999999988887776533210 0 11111000
Q ss_pred cCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 231 VGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 231 ~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+... + .... .+.+|+++.+-. ...++.+.+.|++||.+++.-.
T Consensus 219 -------~~~~-~-~~~~--~~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 219 -------VAEQ-L-RESC--PAGVDVYFDNVG---------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp -------HHHH-H-HHHC--TTCEEEEEESCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred -------HHHH-H-HHhc--CCCCCEEEECCC---------HHHHHHHHHHhccCcEEEEECC
Confidence 0000 0 0111 126999986432 1457788899999999988643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.26 E-value=1.2 Score=40.75 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=60.7
Q ss_pred CCCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.| .|.|..+..++.....+|++++.+++-++.+++. .. . ..+...-. +
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-Ga--------~---~~~~~~~~--~------- 219 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL-GC--------D---RPINYKTE--P------- 219 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC--------S---EEEETTTS--C-------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-CC--------c---EEEecCCh--h-------
Confidence 34678999999 5677777766665544899999999888888752 11 0 01111000 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+ .+ .... ...+|+|+.+-. . ..++.+.+.|+++|.+++.-.
T Consensus 220 -----~~~-~~-~~~~--~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 220 -----VGT-VL-KQEY--PEGVDVVYESVG-------G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp -----HHH-HH-HHHC--TTCEEEEEECSC-------T--HHHHHHHHHEEEEEEEEECCC
T ss_pred -----HHH-HH-HHhc--CCCCCEEEECCC-------H--HHHHHHHHHHhcCCEEEEEeC
Confidence 000 00 0111 246999986432 1 356778899999999988654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.84 E-value=0.81 Score=42.24 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=32.8
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHH
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~ 198 (307)
..++.+||-+|+| .|..+..+++... .+|++++.++.-++.+++
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 238 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 238 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence 3467899999965 3566666555555 489999999998888874
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=2.9 Score=43.87 Aligned_cols=46 Identities=20% Similarity=0.098 Sum_probs=39.0
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~ 201 (307)
....+++|+=||.|.++..+-..++ ..+.++|+++...+.-+.++.
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p 584 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP 584 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence 3567999999999999998777776 568899999999998887764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.74 E-value=1.6 Score=38.86 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
..++.+||=+|+| .|..+..+++....+|++++ ++.-++.+++.-. .. .+. +.+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa---------~~---v~~-d~~----------- 194 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV---------RH---LYR-EPS----------- 194 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE---------EE---EES-SGG-----------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC---------CE---EEc-CHH-----------
Confidence 5578899999985 36666666555444899999 8888888876421 00 111 111
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.+ .+.+|+|+-.-.- ..+..+.+.|+|+|.+++.-
T Consensus 195 ------------~v---~~g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 195 ------------QV---TQKYFAIFDAVNS---------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------GC---CSCEEEEECC----------------TTGGGEEEEEEEEEEC
T ss_pred ------------Hh---CCCccEEEECCCc---------hhHHHHHHHhcCCCEEEEEe
Confidence 22 4579999854321 11355778999999998873
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=83.46 E-value=0.37 Score=44.16 Aligned_cols=45 Identities=13% Similarity=-0.051 Sum_probs=33.1
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l 222 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM 222 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 44678999999853 6666655554444799999999888888763
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=2.8 Score=37.34 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=58.1
Q ss_pred eEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 160 ~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+||=.|+ |.|..+..+++....+|++++.++.-++.+++.-.. . .+ +..
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~---vi--~~~--------------- 199 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN---------R---IL--SRD--------------- 199 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS---------E---EE--EGG---------------
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------E---EE--ecC---------------
Confidence 4888886 567777776665545899999999988888764211 0 11 111
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..+....+ ..+.+|+|+-.- . ...+..+.+.|+|+|.+++.-.
T Consensus 200 --~~~~~~~~--~~~~~d~v~d~~-----g----~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 200 --EFAESRPL--EKQLWAGAIDTV-----G----DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --GSSCCCSS--CCCCEEEEEESS-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred --CHHHHHhh--cCCCccEEEECC-----C----cHHHHHHHHHHhcCCEEEEEec
Confidence 00000022 135799987532 2 1267888999999999998644
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=82.77 E-value=0.56 Score=41.70 Aligned_cols=43 Identities=9% Similarity=-0.104 Sum_probs=32.8
Q ss_pred CCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 021836 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (307)
Q Consensus 156 ~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~ 198 (307)
.++.+||-+|+ |.|..+..++.....+|++++.++.-++.+++
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 168 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA 168 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 36789999997 56777776665554489999999988887764
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=81.47 E-value=2.6 Score=39.36 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=36.0
Q ss_pred CCceEEEEeccccHHHHHHHHhc------CC--cEEEEeCCHHHHHHHHHHhCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~------~~--~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+..|+|+|+|.|.++..++... +. +++.||+|+...+.=++.+..
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 45789999999999998887642 12 799999999988866666643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.40 E-value=1.1 Score=40.76 Aligned_cols=100 Identities=20% Similarity=0.108 Sum_probs=60.0
Q ss_pred CCCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+||-.| +|.|..+..++.....+|++++.++.-++.+++.-.. . .+...-. +
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~---~~~~~~~--~------- 223 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK---------R---GINYRSE--D------- 223 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS---------E---EEETTTS--C-------
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------E---EEeCCch--H-------
Confidence 45778999985 3456777766665555899999999998888764211 0 1111000 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.. .+ .... .+.+|+|+.+-.- ..+..+.+.|+++|.+++.-.
T Consensus 224 -----~~~-~~-~~~~--~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 224 -----FAA-VI-KAET--GQGVDIILDMIGA---------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp -----HHH-HH-HHHH--SSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred -----HHH-HH-HHHh--CCCceEEEECCCH---------HHHHHHHHHhccCCEEEEEEe
Confidence 000 00 0111 3479999864321 136677889999999988654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=2.3 Score=38.39 Aligned_cols=98 Identities=17% Similarity=0.075 Sum_probs=56.7
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+||-+|+|. |..+..++..... +|++++.++.-++.+++. ... .+++...++. .+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~---------v~~~~~~~~~-----~~----- 223 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR---------LVNPLEEDLL-----EV----- 223 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE---------EECTTTSCHH-----HH-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh---------ccCcCccCHH-----HH-----
Confidence 678899999853 5666655555444 799999998777666443 110 0000000000 00
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+ .... ...+|+|+-.-.- ...++.+.+.|+++|.+++.-.
T Consensus 224 --------~-~~~~--~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 224 --------V-RRVT--GSGVEVLLEFSGN--------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp --------H-HHHH--SSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred --------H-HHhc--CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 0 0111 2469999854320 2456778889999999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 307 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 7e-36 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 7e-18 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 3e-06 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 7e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.001 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.001 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 127 bits (320), Expect = 7e-36
Identities = 78/241 (32%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKK 241
DLLEPV H L+ E F ++
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPP------------- 156
Query: 242 GISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 301
YD+I +QW +LTD DFV FFK + L P G+ KEN + FL
Sbjct: 157 ----------NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL 206
Query: 302 L 302
+
Sbjct: 207 V 207
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.7 bits (192), Expect = 7e-18
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF 121
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 3e-06
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)
Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
+ L+ F +D GSG +F ++ + + + L
Sbjct: 39 WKLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97
Query: 201 APENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFT---------PET 251
E A + + C+ ++G+ E + + K+ + D P
Sbjct: 98 QEE-PGAFNWSMYSQHACL-IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155
Query: 252 GRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFV 289
D + +C+ ++ D F L+PGG +
Sbjct: 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 20/161 (12%), Positives = 38/161 (23%), Gaps = 17/161 (10%)
Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
+ +D GSG F ++ L + + +
Sbjct: 41 LHKTFGPGGLQGDT------LIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK-- 92
Query: 201 APENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPET-------GR 253
+ F L+G + ++ K K+ + D
Sbjct: 93 WLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPL 152
Query: 254 YDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE 292
D + + D + + LKPGG V
Sbjct: 153 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.4 bits (85), Expect = 0.001
Identities = 15/105 (14%), Positives = 31/105 (29%)
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISA 245
++ LD A + + ++ + + G +
Sbjct: 35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR 94
Query: 246 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290
+ E +D + I H + FK + LKP G F++
Sbjct: 95 KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 13/126 (10%)
Query: 178 RYFNEVDLLEPVSHFLDAARESLAP-----------ENHMAPDMHKATNFFCVPLQGQRE 226
YF E L + AA + +AP N + +
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMA 66
Query: 227 KNKKVGSKKVKIAKKGISADFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 284
+++ + + + D G YD I + L + KP
Sbjct: 67 NLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKP 126
Query: 285 GGFFVL 290
GG+ ++
Sbjct: 127 GGYNLI 132
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 307 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.98 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.94 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.79 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.76 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.75 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.73 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.71 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.71 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.7 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.69 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.66 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.65 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.59 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.58 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.58 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.58 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.54 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.53 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.51 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.48 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.46 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.42 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.42 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.37 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.35 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.33 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.3 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.3 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.3 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.28 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.27 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.26 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.23 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.22 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.18 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.13 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.11 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.1 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.08 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.08 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.08 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.05 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.05 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.99 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.97 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.93 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.92 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.92 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.88 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.88 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.85 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.84 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.81 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.78 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.7 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.67 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.64 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.6 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.53 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.47 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.45 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.43 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.38 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.37 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.35 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.31 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.3 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.21 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.04 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.0 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.96 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.88 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.85 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.56 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.54 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.5 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.44 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.37 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.35 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.29 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.12 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.0 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.87 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.43 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.4 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.35 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.28 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.2 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.06 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.04 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.61 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.92 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.75 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.43 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.98 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.86 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.6 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.24 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.24 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.91 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.84 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.55 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.8 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.77 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.66 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.59 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.5 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.75 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.28 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.2 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.31 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.02 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.98 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 83.73 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.97 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.38 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 81.53 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 80.38 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 80.35 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.98 E-value=8.5e-33 Score=247.17 Aligned_cols=200 Identities=39% Similarity=0.736 Sum_probs=169.5
Q ss_pred CCCCceeeccccCCCccccCHHHHHHHhhcCccccccchhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHH
Q 021836 64 KESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQ 143 (307)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~ 143 (307)
..+..+.+.|.++.|++|.+..++|++.+..+.. .....||.++.+||+.++.++++|++||.+++..++..++.|+.
T Consensus 10 ~~~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~ 87 (254)
T d1xtpa_ 10 ASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIA 87 (254)
T ss_dssp ---CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHh
Confidence 3477889999999999999999999999886543 34557999999999999999999999999999999988888887
Q ss_pred HHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccc
Q 021836 144 MLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQG 223 (307)
Q Consensus 144 ~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (307)
.+.. .+..+|||+|||+|+++..++.+++.+|+++|+|+.|++.|++++.. ...+++++.+++
T Consensus 88 ~l~~--------~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~- 150 (254)
T d1xtpa_ 88 SLPG--------HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASME- 150 (254)
T ss_dssp TSTT--------CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGG-
T ss_pred hCCC--------CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEcccc-
Confidence 5542 35679999999999999988888888999999999999999988753 234667777777
Q ss_pred ccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC-CCcccC
Q 021836 224 QREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SGTFLL 302 (307)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~-~~~~~d 302 (307)
++.+++++||+|++.++++|++++++..+++++++.|+|||+|++.+++.. ++++.|
T Consensus 151 ----------------------~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d 208 (254)
T d1xtpa_ 151 ----------------------TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp ----------------------GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred ----------------------ccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec
Confidence 777778899999999999999988899999999999999999999998765 345555
Q ss_pred CC
Q 021836 303 SH 304 (307)
Q Consensus 303 ~~ 304 (307)
.+
T Consensus 209 ~~ 210 (254)
T d1xtpa_ 209 KE 210 (254)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.6e-27 Score=205.58 Aligned_cols=172 Identities=44% Similarity=0.877 Sum_probs=141.4
Q ss_pred chhHHHHHHHhhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC
Q 021836 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (307)
Q Consensus 101 ~~~~~~~~~~~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~ 180 (307)
.+..||+++.+||++++.++++++++|+.++..+...++.++...+..... ..+..+|||+|||+|..+..++...+
T Consensus 7 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~ 83 (222)
T d2ex4a1 7 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF 83 (222)
T ss_dssp CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred hHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcC
Confidence 456899999999999999999999999988888888888888777654332 33567999999999999997777777
Q ss_pred CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc
Q 021836 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ 260 (307)
Q Consensus 181 ~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~ 260 (307)
.+|+|+|+|+.|++.|++++...+ ...+.|++.++. ++.+++++||+|++.
T Consensus 84 ~~v~~vD~s~~~l~~ak~~~~~~~------~~~~~f~~~d~~-----------------------~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 84 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQ-----------------------DFTPEPDSYDVIWIQ 134 (222)
T ss_dssp SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGG-----------------------GCCCCSSCEEEEEEE
T ss_pred CEEEEeecCHHHhhcccccccccc------cccccccccccc-----------------------ccccccccccccccc
Confidence 789999999999999999875432 223456666666 666667899999999
Q ss_pred hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCCcccCCC
Q 021836 261 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 304 (307)
Q Consensus 261 ~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~~~~d~~ 304 (307)
++++|++++++..+++++++.|||||.|++.+++..++...+..
T Consensus 135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~ 178 (222)
T d2ex4a1 135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 178 (222)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT
T ss_pred cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccC
Confidence 99999998888899999999999999999999988877665543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=7.7e-20 Score=159.59 Aligned_cols=111 Identities=17% Similarity=0.245 Sum_probs=91.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.++..+.. ...+|+|+|+|+.|++.|++++...+. .++.+.+.+++
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~-~~~~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~------------ 74 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAE------------ 74 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTT------------
T ss_pred CCCCCEEEEeCCcCcHHHHHHHH-hCCeEEEEeCChhhhhhhhhhhccccc------ccccccccccc------------
Confidence 45889999999999999997654 456799999999999999988754322 22455555555
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.+++++++||+|+|..+++|++ +...+++++.++|||||++++.++..+.
T Consensus 75 -----------~~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 75 -----------SLPFPDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp -----------BCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred -----------cccccccccceeeeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 6666789999999999999998 5699999999999999999998875543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=1.5e-19 Score=162.30 Aligned_cols=114 Identities=20% Similarity=0.281 Sum_probs=93.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....++ ..++.+.+.++.
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~------------ 127 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFL------------ 127 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTT------------
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----cccccccccccc------------
Confidence 457899999999999999977665555899999999999999988754332 223455555555
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
++++++++||+|++..+++|++ +...+++++.++|||||.|++.+.+..++
T Consensus 128 -----------~l~~~~~sfD~V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 178 (282)
T d2o57a1 128 -----------EIPCEDNSYDFIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDG 178 (282)
T ss_dssp -----------SCSSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTT
T ss_pred -----------cccccccccchhhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCC
Confidence 6666788999999999999998 66899999999999999999998765544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=2.7e-19 Score=153.84 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||||||+|..+..+.. ...+|+|+|+|+.|++.|+++....+ ....+.+.++.
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~-------~~~~~~~~d~~-------------- 94 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDAR-------------- 94 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTT--------------
T ss_pred CCCEEEEECCCcchhhhhHhh-hhcccccccccccchhhhhhhhcccc-------ccccccccccc--------------
Confidence 568999999999999997654 44579999999999999998874322 12344455555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++.++++||+|+|.++++|+++.++..+++++.++|||||.+++...
T Consensus 95 ---------~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 95 ---------KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp ---------SCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 566667899999999999999988889999999999999999988754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=1.9e-19 Score=155.90 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=90.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|.++..++ +...+|+|+|+|+.|++.|++++...+. .++.+.+.+.+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~~------------ 73 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFA-PFVKKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAE------------ 73 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-------------
T ss_pred CCCcCEEEEecccCcHHHHHHH-HhCCEEEEEECCHHHHhhhhhccccccc------ccccccccccc------------
Confidence 4577899999999999999755 4455799999999999999988754432 23455566655
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
++++++++||+|+|..+++|++ +...+++++.++|||||+|++.++..+..
T Consensus 74 -----------~l~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 124 (231)
T d1vl5a_ 74 -----------QMPFTDERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPEN 124 (231)
T ss_dssp -----------CCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSS
T ss_pred -----------cccccccccccccccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Confidence 6666688999999999999998 56899999999999999999988755443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=3.8e-19 Score=155.91 Aligned_cols=142 Identities=20% Similarity=0.264 Sum_probs=100.7
Q ss_pred hhcccccccccccccCCCCCcccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCH
Q 021836 111 SYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (307)
Q Consensus 111 ~yW~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~ 190 (307)
+||+.++..|+.+.... .........++..++.... ..+..+|||+|||+|..+..++..+. +|+|+|+|+
T Consensus 3 ~~~~~~a~~Yd~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~ 73 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRR----IERVKAEIDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHE 73 (251)
T ss_dssp GGGTTTGGGHHHHTHHH----HHTHHHHHHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCH
T ss_pred chhHhhHHHHHHHHHhh----hhhHHHHHHHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhcccce-EEEEEeecc
Confidence 46666555555432110 0112223345666655332 23567899999999999997665554 799999999
Q ss_pred HHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc-hhhhhCChh
Q 021836 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ-WCIGHLTDD 269 (307)
Q Consensus 191 ~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~ 269 (307)
.|++.|++++...+ ..+.+.+.+++ +++++ ++||+|+|. .+++|++.+
T Consensus 74 ~mi~~a~~~~~~~~-------~~i~~~~~d~~-----------------------~l~~~-~~fD~I~~~~~~~~~~~~~ 122 (251)
T d1wzna1 74 EMLRVARRKAKERN-------LKIEFLQGDVL-----------------------EIAFK-NEFDAVTMFFSTIMYFDEE 122 (251)
T ss_dssp HHHHHHHHHHHHTT-------CCCEEEESCGG-----------------------GCCCC-SCEEEEEECSSGGGGSCHH
T ss_pred cccccccccccccc-------ccchheehhhh-----------------------hcccc-cccchHhhhhhhhhcCChH
Confidence 99999999875432 23566666666 66553 689999986 578888877
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEe
Q 021836 270 DFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 270 dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++..+|++++++|||||++++..
T Consensus 123 ~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 123 DLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEe
Confidence 88999999999999999998853
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2.6e-18 Score=149.44 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~ 217 (307)
...++..++..... ++.+|||+|||+|..+..+... ..+|+|+|+|+.|++.|+++... .++
T Consensus 28 ~~~~~~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~------------~~~ 89 (246)
T d2avna1 28 YHRLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK------------NVV 89 (246)
T ss_dssp HHHHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS------------CEE
T ss_pred HHHHHHHHHHHhcC-----CCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccccc------------ccc
Confidence 34455555544432 5679999999999999976544 45799999999999999987532 233
Q ss_pred ecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc-hhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 218 CVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 218 ~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
..+++ +++.++++||+|+|. .+++|++ +...+++++.++|||||+|++..
T Consensus 90 ~~~~~-----------------------~l~~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 90 EAKAE-----------------------DLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp ECCTT-----------------------SCCSCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc-----------------------ccccccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEE
Confidence 55555 566667899999975 6899998 55889999999999999999865
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=1.6e-17 Score=143.92 Aligned_cols=112 Identities=15% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc--C-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~--~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
++.+|||+|||+|..+..++... . .+|+|+|+|+.|++.|++++...+. .....+...+..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~----------- 102 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIR----------- 102 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTT-----------
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhh-----------
Confidence 67899999999999999766532 2 2799999999999999998754322 112222222222
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 298 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~~ 298 (307)
++ +.+.+|+|+++.+++|++.++...+++++++.|||||.|++.|...+..
T Consensus 103 ------------~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 103 ------------HV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp ------------TC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred ------------cc--ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 33 3568999999999999988889999999999999999999998765443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=7.1e-18 Score=148.02 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=87.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....++. .++.+...++.
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-----~~v~~~~~d~~------------ 93 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-----ERVHFIHNDAA------------ 93 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCCT------------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-----ccchhhhhHHh------------
Confidence 4578899999999999999766655458999999999999999887554331 23445444444
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++. .+++||+|+|..+++|++ +...+++++++.|||||.+++.+..
T Consensus 94 -----------~~~-~~~~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 94 -----------GYV-ANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp -----------TCC-CSSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred -----------hcc-ccCceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEecc
Confidence 443 468999999999999999 5689999999999999999998763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.71 E-value=6.5e-18 Score=148.12 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|++++...+ ..+.+++.|+.
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~-------~~v~~~~~d~~-------------- 94 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQDIS-------------- 94 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCCGG--------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC-------ccceeeccchh--------------
Confidence 457899999999999997655544 79999999999999998875322 23456666655
Q ss_pred eeeccCCcCCCCCCCCceeeEEcc-hhhhhCC-hhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQ-WCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~-~~dl~~~l~~l~~~LkpGG~lii 290 (307)
++.. +++||+|+|. .+++|+. .+++..+++++++.|||||.|++
T Consensus 95 ---------~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 95 ---------NLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp ---------GCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---------hhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4443 5689999986 5777774 45788999999999999999987
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=1.4e-17 Score=141.57 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++.+++ +|+++|+|+.|++.++++....+.. .+.+...++.
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~------~~~~~~~d~~-------------- 88 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD------NLQTDLVDLN-------------- 88 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT------TEEEEECCTT--------------
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc------chhhhheecc--------------
Confidence 346999999999999998766655 6999999999999999887543322 2334444443
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+.+ +++||+|++..+++|++++++..+++++.++|+|||++++...
T Consensus 89 ---------~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 89 ---------TLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp ---------TCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------cccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3333 6789999999999999988899999999999999999999764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.70 E-value=2.4e-17 Score=138.20 Aligned_cols=123 Identities=11% Similarity=-0.052 Sum_probs=89.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
..++.+|||+|||+|..+..++.+++ +|+|+|+|+.|++.|+++....... .....+... ...
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~----~~~~~~~~~------------~~~ 80 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHI----TSQGDFKVY------------AAP 80 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEE----EEETTEEEE------------ECS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccch----hhhhhhhhc------------ccc
Confidence 34788999999999999998877766 5999999999999999988643211 000000000 112
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++|.+.|...........||+|++..+++|+.+++...+++++++.|||||.+++....
T Consensus 81 ~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 81 GIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp SSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 244555554322222346899999999999999888899999999999999998886653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.69 E-value=5.3e-17 Score=143.07 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|..+..+......+|+|+|+|+.|++.|++++...+. ... +
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~----------------------v 76 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFK----------------------V 76 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSE----------------------E
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----Ccc----------------------e
Confidence 6789999999999998877776777899999999999999988754321 112 3
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhC--ChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~--~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.|.+.|.........++||+|+|.+++||+ +..++..+++++.+.|||||+|++.
T Consensus 77 ~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 77 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 344444332322236789999999999997 3356789999999999999999885
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=2.7e-16 Score=141.14 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=93.0
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 219 (307)
..++.++..+ ..+++.+|||||||+|.++..+......+|+|+|+|+.+++.|++++.+.++.. .+.+...
T Consensus 39 ~k~~~~~~~l----~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~-----~~~~~~~ 109 (280)
T d2fk8a1 39 AKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNR-----SRQVLLQ 109 (280)
T ss_dssp HHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSS-----CEEEEES
T ss_pred HHHHHHHHHc----CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcccc-----chhhhhh
Confidence 3455555533 256889999999999999997666655689999999999999999987655421 2222222
Q ss_pred CcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 220 PLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 220 d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+.. ++ +++||.|++..+++|+.+++...++++++++|||||.+++.+.+
T Consensus 110 d~~-----------------------~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 110 GWE-----------------------DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp CGG-----------------------GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhh-----------------------hh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 222 22 57899999999999999888899999999999999999997643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=8.7e-17 Score=144.25 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=83.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|++++...+ ..+.|...++.
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-------~~~~f~~~d~~---------- 87 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDAT---------- 87 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-------SEEEEEESCTT----------
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-------ccccccccccc----------
Confidence 34678999999999999996544332 379999999999999998875432 12445455544
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++ +++||+|+|+++++|++ +...+++++.+.|||||.|++.|.
T Consensus 88 -------------~~~~-~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 -------------EIEL-NDKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp -------------TCCC-SSCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -------------cccc-cCCceEEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 4444 46899999999999999 558899999999999999999884
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=3.3e-17 Score=139.78 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=79.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+..+|||||||+|.++..+ .+++|+|+|+.|++.|+++. +.+.+.+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~~-------------~~~~~~d~~-------------- 83 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKRG-------------VFVLKGTAE-------------- 83 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHTT-------------CEEEECBTT--------------
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhcccccccc-------------ccccccccc--------------
Confidence 4568999999999988753 24799999999999998742 456666666
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++.++++||+|+|..+++|++ +...++++++++|+|||.+++.+.
T Consensus 84 ---------~l~~~~~~fD~I~~~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 84 ---------NLPLKDESFDFALMVTTICFVD--DPERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp ---------BCCSCTTCEEEEEEESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cccccccccccccccccccccc--ccccchhhhhhcCCCCceEEEEec
Confidence 6666678999999999999998 568999999999999999999765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.66 E-value=2.3e-16 Score=136.69 Aligned_cols=99 Identities=25% Similarity=0.327 Sum_probs=80.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..+ +....+|+|+|+|+.|++.|+++.. ..+.+...+++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l-~~~g~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~-------------- 74 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQGRLK----------DGITYIHSRFE-------------- 74 (225)
T ss_dssp CSSCEEEESCTTSHHHHHH-TTTCSCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGG--------------
T ss_pred CCCcEEEEeCCCcHHHHHH-HHcCCeEEEEeCcHHHhhhhhcccc----------ccccccccccc--------------
Confidence 4578999999999999965 4444579999999999999998863 23455566555
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHH-HcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~-~~LkpGG~lii~e 292 (307)
+..+ +++||+|++..+++|++ +...+++++. ++|+|||.+++.-
T Consensus 75 ---------~~~~-~~~fD~I~~~~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 75 ---------DAQL-PRRYDNIVLTHVLEHID--DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp ---------GCCC-SSCEEEEEEESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---------cccc-ccccccccccceeEecC--CHHHHHHHHHHHhcCCCceEEEEe
Confidence 4444 57999999999999998 5588899998 7899999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.1e-16 Score=137.32 Aligned_cols=126 Identities=14% Similarity=-0.020 Sum_probs=92.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|..+..++..++ +|+|+|+|+.+++.|+++........ .....+. .........+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~ 111 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEE-------PITEIPG----TKVFKSSSGN 111 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEE-------ECTTSTT----CEEEEETTSS
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhcccccc-------chhcccc----cceeeecCCc
Confidence 3678999999999999998776666 69999999999999998875421100 0000000 0001112345
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+++.+.|+........+.||+|+...+++|++.++...+++++.++|||||.+++...
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 7788777664444456899999999999999988999999999999999999877654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.3e-15 Score=137.32 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeec
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 219 (307)
..+..++..+ ..+++.+|||||||+|..+..++.....+|+|+++|+.+++.+++++...++.+ .+.+...
T Consensus 48 ~k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~-----~v~~~~~ 118 (291)
T d1kpia_ 48 AKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPR-----RKEVRIQ 118 (291)
T ss_dssp HHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSS-----CEEEEEC
T ss_pred HHHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccch-----hhhhhhh
Confidence 4455555432 256889999999999999998777766689999999999999998886554422 2222222
Q ss_pred CcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh-------hHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 220 PLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 220 d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-------~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+ ....+++||.|++..++.|+.+ +....+++++.++|||||.+++..
T Consensus 119 d--------------------------~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 119 G--------------------------WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp C--------------------------GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred c--------------------------ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 2 2223678999999999999975 357899999999999999999876
Q ss_pred ccCC
Q 021836 293 NIAR 296 (307)
Q Consensus 293 ~~~~ 296 (307)
.+.+
T Consensus 173 i~~~ 176 (291)
T d1kpia_ 173 ITIP 176 (291)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=2.1e-15 Score=135.48 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=89.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|..+..++.....+|+|+++|+.+++.|+++....+.. ..+.+...|..
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-----~~v~~~~~d~~------------ 122 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-----RSKRVLLAGWE------------ 122 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-----SCEEEEESCGG------------
T ss_pred CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-----hhhHHHHhhhh------------
Confidence 5689999999999999999877776568999999999999999987655432 23344444433
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.+ +++||.|++..++.|+.......+++++.++|||||.+++...+
T Consensus 123 -----------~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 123 -----------QF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp -----------GC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -----------cc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 33 47899999999999998778899999999999999999986654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.59 E-value=2.2e-15 Score=132.89 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=85.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
+..+|||||||+|.++..++..+.. +++++|+ +.+++.+++++...+.. .+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---------------------------~r 131 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---------------------------DR 131 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---------------------------TT
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc---------------------------cc
Confidence 4579999999999999988777765 7899998 67999999887543321 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
|++...|..... +.+||+|++.+++||+++++...+|++++++|||||.|+|.|.+.
T Consensus 132 v~~~~~D~~~~~---~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 132 VDVVEGDFFEPL---PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEEECCTTSCC---SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hhhccccchhhc---ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444444443222 457999999999999998888899999999999999999998753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.8e-16 Score=133.86 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|..+..++.....+|+++|+|+.|++.|+++..... ..+.++..+..
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~-------------- 111 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWE-------------- 111 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHH--------------
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------ccccccccccc--------------
Confidence 568999999999999997665555689999999999999999875432 12222222222
Q ss_pred eeeccCCcCCCCCCCCceeeEE-----cchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 237 KIAKKGISADFTPETGRYDVIW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi-----~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. ....+.++||.|+ +...++|+. +...++++++++|||||+|++.+
T Consensus 112 -----~~--~~~~~~~~fD~i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 112 -----DV--APTLPDGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp -----HH--GGGSCTTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred -----cc--ccccccccccceeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 00 1122467888887 456677766 67899999999999999998854
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.5e-15 Score=133.90 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=87.8
Q ss_pred HHHHHHHHHhccCCCc-cCCCCceEEEEeccccHHHHHHHHhc----CC---cEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 021836 138 SEAFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIRY----FN---EVDLLEPVSHFLDAARESLAPENHMAPD 209 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~-~~~~~~~ILDiGcGtG~~t~~ll~~~----~~---~v~~vD~s~~~l~~A~~~~~~~~~~~~~ 209 (307)
...++...++.++... ..++..+|||||||+|.++..++... .. .++++|+|+.|++.+++++.......
T Consensus 20 ~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~-- 97 (280)
T d1jqea_ 20 MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE-- 97 (280)
T ss_dssp HHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT--
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc--
Confidence 3445555554443221 12355689999999999988776542 11 58999999999999999876432110
Q ss_pred cccccceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 210 MHKATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 210 ~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.....+...+++. ...+. ....++++||+|++.++++|+. ++..++++++++|+|||.|+
T Consensus 98 -~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~ 157 (280)
T d1jqea_ 98 -NVKFAWHKETSSE---------------YQSRM--LEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKML 157 (280)
T ss_dssp -TEEEEEECSCHHH---------------HHHHH--TTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEE
T ss_pred -cccccchhhhhhh---------------hcchh--cccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEE
Confidence 1111122222110 00000 1122468999999999999998 66899999999999999998
Q ss_pred EEec
Q 021836 290 LKEN 293 (307)
Q Consensus 290 i~e~ 293 (307)
++..
T Consensus 158 i~~~ 161 (280)
T d1jqea_ 158 IIVV 161 (280)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-15 Score=133.97 Aligned_cols=139 Identities=18% Similarity=0.096 Sum_probs=84.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccc-cccc--cC
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQRE-KNKK--VG 232 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~--~~ 232 (307)
.++.+|||+|||+|..+..++...+.+|+|+|+|+.|++.|++++...+...... ....+ ..++++... ..+. ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWT-PAVKF-ACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCH-HHHHH-HHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhh-hHHHH-HHHhccccchHHHHHHHH
Confidence 3568999999999998875555556689999999999999999875432211000 00000 000000000 0000 00
Q ss_pred ccceee-eccCCcC---CCCCCCCceeeEEcchhhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 233 SKKVKI-AKKGISA---DFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 233 ~~~i~~-~~~d~~~---~~~~~~~~fDlIi~~~~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
...+.. ...+... ..+...++||+|++.++++|+.. ++...+++++.++|||||+|++.+....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 000110 0111111 11234678999999999999853 4678999999999999999999876433
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.54 E-value=1e-14 Score=128.88 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=85.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|.++..+++.++. +++++|+ +.+++.+++++...+.. .+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~---------------------------~r 132 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---------------------------DR 132 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---------------------------TT
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc---------------------------ce
Confidence 4568999999999999998888766 8999997 78999999887544321 12
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
+++...|.... .+.+||+|++.+++||+++++...+|++++++|||||.|+|.|.+..
T Consensus 133 i~~~~~d~~~~---~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~ 190 (256)
T d1qzza2 133 VTVAEGDFFKP---LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 190 (256)
T ss_dssp EEEEECCTTSC---CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-
T ss_pred eeeeeeecccc---ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccC
Confidence 33333333222 24569999999999999988889999999999999999999997643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.53 E-value=1.9e-14 Score=121.73 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=80.3
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||+|||+|.++..+ +....+|+++|+|+.+++.+++++...+..+ . +
T Consensus 51 ~~~~~VLDiGcG~G~~~~~l-a~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~----~----------------------~ 103 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIAL-ADEVKSTTMADINRRAIKLAKENIKLNNLDN----Y----------------------D 103 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHTTCTT----S----------------------C
T ss_pred CCCCeEEEEeecCChhHHHH-HhhccccceeeeccccchhHHHHHHHhCCcc----c----------------------e
Confidence 36789999999999999964 5566689999999999999999876543321 1 2
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++...|.... .++++||+|+++.++++. .+....+++.+.+.|||||.+++..
T Consensus 104 i~~~~~d~~~~--~~~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 104 IRVVHSDLYEN--VKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEECSTTTT--CTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEcchhhh--hccCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 33444444332 246799999998876544 3346789999999999999988753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=6.7e-15 Score=132.11 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccccee
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~ 217 (307)
...++..++.. .+..+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....+... ......+.
T Consensus 44 ~~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~--~~~~~~~~ 113 (292)
T d1xvaa_ 44 YKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEP--AFDKWVIE 113 (292)
T ss_dssp HHHHHHHHHHH-------TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSH--HHHTCEEE
T ss_pred HHHHHHHHhhh-------cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhccccc--ccceeeee
Confidence 44566666652 2456899999999999998776654 69999999999999998764322110 00000111
Q ss_pred ecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcc-hhhhhCCh-----hHHHHHHHHHHHcCCCCcEEEEE
Q 021836 218 CVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 218 ~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~-~~l~~~~~-----~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
..+ +...+. ..+ ..++||+|+|. .+++|+.+ .++..+|++++++|||||.|++.
T Consensus 114 ~~~-----------------~~~~~~--~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 114 EAN-----------------WLTLDK--DVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp ECC-----------------GGGHHH--HSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecc-----------------cccccc--ccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 111 111110 222 35689999976 47889864 35788999999999999999984
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.9e-14 Score=127.85 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||+|||+|..+..+...... +++|+|+|+.|++.|+++.. .+.+...++.
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~-----------~~~~~~~d~~------------- 139 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSH------------- 139 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTT-------------
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc-----------cccceeeehh-------------
Confidence 6689999999999999977666554 79999999999999988753 2456666666
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.+++++++||+|++.++++| ++++.++|||||.|++...
T Consensus 140 ----------~l~~~~~sfD~v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 140 ----------RLPFSDTSMDAIIRIYAPCK---------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ----------SCSBCTTCEEEEEEESCCCC---------HHHHHHHEEEEEEEEEEEE
T ss_pred ----------hccCCCCCEEEEeecCCHHH---------HHHHHHHhCCCcEEEEEee
Confidence 66667899999999887665 4668999999999999764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=2.5e-14 Score=120.26 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+.++.+|||+|||+|.++..++ ....+|+++|+++.|++.|++++...++. .++.++..+..
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA-~~~~~V~avD~~~~~l~~a~~n~~~~gl~-----~~v~~~~gda~------------ 92 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELA-GRVRRVYAIDRNPEAISTTEMNLQRHGLG-----DNVTLMEGDAP------------ 92 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTCC-----TTEEEEESCHH------------
T ss_pred CCCCCEEEEEECCeEccccccc-ccceEEEEecCCHHHHHHHHHHHHHcCCC-----cceEEEECchh------------
Confidence 4578999999999999999754 55668999999999999999998765442 23445555443
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.......||+|++....+ ....+++.+.+.|||||.+++...
T Consensus 93 -----------~~~~~~~~~D~v~~~~~~~-----~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 93 -----------EALCKIPDIDIAVVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp -----------HHHTTSCCEEEEEESCCTT-----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -----------hcccccCCcCEEEEeCccc-----cchHHHHHHHHHhCcCCEEEEEee
Confidence 3333457899999976543 456789999999999999988653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2e-14 Score=127.35 Aligned_cols=138 Identities=13% Similarity=0.203 Sum_probs=86.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccc---ccccccCc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQR---EKNKKVGS 233 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~ 233 (307)
.+.+|||+|||+|..+...+.+.+.+|+++|+|+.|++.+++++......- .......+ ..+.++.. ...+...+
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAF-NWSMYSQH-ACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCC-CCHHHHHH-HHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccc-cchhhhhh-hhhhccccchhhhhHHHhh
Confidence 578999999999988764556677789999999999999998875432110 00000000 00000000 00000001
Q ss_pred cce-eeeccCCcCCC-----CCCCCceeeEEcchhhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 234 KKV-KIAKKGISADF-----TPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 234 ~~i-~~~~~d~~~~~-----~~~~~~fDlIi~~~~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
..+ .+...|+.... ....++||+|++.++++|+.. ++...++++++++|||||+|++.+....
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~ 202 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE 202 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence 111 22233443322 223568999999999999853 4688999999999999999999876543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2.5e-14 Score=126.34 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..+. +...+|+|+|+|+.|++.|++++...+.. ..+...++.
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~-------~~~~~~d~~-------------- 177 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVR-------PRFLEGSLE-------------- 177 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCC-------CEEEESCHH--------------
T ss_pred ccCEEEEcccchhHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCc-------eeEEecccc--------------
Confidence 67899999999999999654 44457999999999999999988654432 234444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. .+.++||+|+++...+ .+..+++.+.+.|||||+|++++.
T Consensus 178 ---------~~-~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 178 ---------AA-LPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp ---------HH-GGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cc-ccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEec
Confidence 21 1257899999875432 567788999999999999999754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=1.8e-13 Score=119.02 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=81.0
Q ss_pred CCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccc
Q 021836 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKN 228 (307)
Q Consensus 150 ~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (307)
+...+.+++.+|||+|||+|..+..+...... .|+|+|+|+.|++.++++....+ ++..+..+..
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~--------ni~~i~~d~~------ 132 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE--------NIIPILGDAN------ 132 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT--------TEEEEECCTT------
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc--------ccceEEEeec------
Confidence 33334678999999999999999977655433 79999999999999998865421 1222222222
Q ss_pred cccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 229 KKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 229 ~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
......+..+|++++...+++.. +...++.++.+.|||||.+++.....
T Consensus 133 ----------------~~~~~~~~~~~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 133 ----------------KPQEYANIVEKVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp ----------------CGGGGTTTCCCEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ----------------cCcccccccceeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeecc
Confidence 01111245667776666666766 66889999999999999999986543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=2.9e-13 Score=114.58 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=84.8
Q ss_pred CCceEEEEeccccHHHHHH---HH-hcC----C-cEEEEeCCHHHHHHHHHHhCC-CCCCCccccccccee-ecCccccc
Q 021836 157 QHLVALDCGSGIGRITKNL---LI-RYF----N-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFF-CVPLQGQR 225 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~l---l~-~~~----~-~v~~vD~s~~~l~~A~~~~~~-~~~~~~~~~~~~~~~-~~d~~~~~ 225 (307)
++.+||++|||+|.-...+ +. ... . +|+|+|+|+.+++.|++..-. .............++ ..+.. ..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~-~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP-HE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT-SC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCC-cc
Confidence 5689999999999743322 12 111 1 699999999999999854311 111000000001111 11100 00
Q ss_pred cccccc--CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 226 EKNKKV--GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 226 ~~~~~~--~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...+.. -...+.+...++.....+..++||+|+|.++|.|++++....+++++++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000111 134466777766655544568999999999999999988899999999999999999985
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=1.3e-13 Score=118.44 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+|||||||+|..+..+..... .+|+++|+++.+++.|++++...+..| +.+...+..
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n------~~~~~~d~~---------- 136 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN------VIFVCGDGY---------- 136 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS------EEEEESCGG----------
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc------cccccCchH----------
Confidence 45889999999999999996544433 279999999999999999986544322 233333333
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
...+..++||+|++..+++++++ .+.+.|||||.|++..
T Consensus 137 -------------~~~~~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 137 -------------YGVPEFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp -------------GCCGGGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred -------------HccccccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 22334678999999999888773 3567799999998853
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=5.9e-13 Score=117.82 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=78.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..|+.+|||+|||+|.+|..++.... .+|+++|+++++++.|++++...... ...
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~---~~~-------------------- 150 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPD-------------------- 150 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCT--------------------
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC---CCc--------------------
Confidence 45899999999999999998766543 28999999999999999887432100 011
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++++...|+. +...++++||.|++ +++++ ..++..+.++|||||.+++...
T Consensus 151 --nv~~~~~d~~-~~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 151 --NWRLVVSDLA-DSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp --TEEEECSCGG-GCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred --eEEEEecccc-cccccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeC
Confidence 2334444433 33445789999986 56644 7889999999999999988554
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=4.3e-13 Score=114.94 Aligned_cols=107 Identities=13% Similarity=0.033 Sum_probs=73.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+|+.+|||+|||+|..+..+..... .+|+|+|+|+.|++.++++.... .++.+...+..
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--------~ni~~i~~d~~----------- 114 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDAS----------- 114 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTT-----------
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--------CCceEEEeecc-----------
Confidence 56889999999999999997654433 27999999999999998876432 12333333332
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+. .........+|+|++. +.|.. +...+++++++.|||||.+++...
T Consensus 115 --------~~-~~~~~~~~~vd~v~~~--~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 115 --------KP-WKYSGIVEKVDLIYQD--IAQKN--QIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp --------CG-GGTTTTCCCEEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------Cc-cccccccceEEEEEec--ccChh--hHHHHHHHHHHHhccCCeEEEEEE
Confidence 00 0111112346666543 44544 668899999999999999998764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.35 E-value=1.3e-12 Score=111.52 Aligned_cols=105 Identities=12% Similarity=0.227 Sum_probs=78.2
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
-.|||||||+|..+..++..... +++|+|+++.++..|.++....+.. ++.++..|+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~------Nv~~~~~Da~--------------- 89 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ------NVKLLNIDAD--------------- 89 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS------SEEEECCCGG---------------
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc------Cchhcccchh---------------
Confidence 47999999999999987777665 8999999999999999887655433 2444444443
Q ss_pred eeccCCcCCCC--CCCCceeeEEcchhhhhCChhH------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 238 IAKKGISADFT--PETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 238 ~~~~d~~~~~~--~~~~~fDlIi~~~~l~~~~~~d------l~~~l~~l~~~LkpGG~lii~e 292 (307)
.+. .+++++|.|++.+...+..... ...+++.++++|||||.|++..
T Consensus 90 --------~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 90 --------TLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp --------GHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred --------hhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 221 3478899999877655443221 1579999999999999998853
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.33 E-value=2.1e-12 Score=111.68 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=73.8
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+++.+|||||||+|+.|. +++....+|+++|+++.+++.|++++... .++.+...+.
T Consensus 68 l~~g~~VLdIG~GsGy~ta-~La~l~~~V~aiE~~~~~~~~A~~~~~~~--------~nv~~~~~d~------------- 125 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTA-LIAEIVDKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDG------------- 125 (224)
T ss_dssp CCTTCEEEEECCTTSHHHH-HHHHHSSEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCG-------------
T ss_pred hcccceEEEecCCCCHHHH-HHHHHhcccccccccHHHHHHHHHHHhcc--------cccccccCch-------------
Confidence 4578999999999999998 56777789999999999999999887532 2233433333
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...++ +.++||+|++..++.++++ .+.+.|||||.|++.
T Consensus 126 ---------~~g~~-~~~pfD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 126 ---------TLGYE-EEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp ---------GGCCG-GGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ---------hhcch-hhhhHHHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 22333 3578999999888877762 356789999999884
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=2.1e-12 Score=117.67 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..++..+..+|+++|.|+ +++.|++.....+. ...+.++..++.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~-------------- 97 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLE-------------- 97 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehh--------------
Confidence 5679999999999999965555667899999986 67778776654432 223444455544
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-hHHHHHHHHHHHcCCCCcEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-~dl~~~l~~l~~~LkpGG~li 289 (307)
++..++++||+|++.+..+++.. ..+..++....+.|||||.++
T Consensus 98 ---------~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 98 ---------DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ---------TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ---------hccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 55555789999999776655543 357888999999999999886
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.2e-12 Score=113.26 Aligned_cols=104 Identities=23% Similarity=0.312 Sum_probs=73.0
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~---~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.+++.+|||||||+|+.+.. ++.. ..+|+++|+++.+++.|++++...+..+.
T Consensus 74 l~~g~~VLdiG~GsGy~ta~-la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~----------------------- 129 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTAC-FARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL----------------------- 129 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-----------------------
T ss_pred cCCCCeEEEecCCCCHHHHH-HHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc-----------------------
Confidence 34788999999999999984 4443 23899999999999999988754322110
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
...++++...|....+ ++.++||+|++..++.++++ .+.+.|||||.|++.
T Consensus 130 ~~~~~~~~~gD~~~~~-~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 130 SSGRVQLVVGDGRMGY-AEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp HTSSEEEEESCGGGCC-GGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred cccceEEEEeeccccc-chhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 0112333334433233 34678999999998887763 367889999999884
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.30 E-value=1.9e-12 Score=113.66 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++.... .+|+++|.++.+++.|++++..... ..+
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~n------------------- 138 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGN------------------- 138 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTT-------------------
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCc-------------------
Confidence 56889999999999999997665532 3899999999999999999865321 122
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|++...|+...+ +++.||.|++ +++ +...++..+.++|||||.|++..
T Consensus 139 ---v~~~~~Di~~~~--~~~~fD~V~l-----d~p--~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 139 ---VRTSRSDIADFI--SDQMYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp ---EEEECSCTTTCC--CSCCEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred ---eEEEEeeeeccc--ccceeeeeee-----cCC--chHHHHHHHHHhcCCCceEEEEe
Confidence 334444443232 3578999986 345 33678999999999999999853
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=2.7e-12 Score=116.36 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=76.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..++..+..+|+++|.|+.+ ..+++.....++ ..++.+++.++.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~-----~~~v~~~~~~~~-------------- 92 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKL-----DHVVTIIKGKVE-------------- 92 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCC-----ccccceEeccHH--------------
Confidence 567899999999999996555556689999999865 555555443332 223455555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-HHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-dl~~~l~~l~~~LkpGG~lii 290 (307)
++..+.++||+|++.+..+++..+ .+..++..+.+.|||||.++-
T Consensus 93 ---------~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 93 ---------EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp ---------TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ---------HcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 555556899999987776655433 578899999999999999873
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.7e-12 Score=115.49 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=85.7
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 218 (307)
.++..++... . .+++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++...... .....
T Consensus 138 ~~~~~~~~~~-~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~-------~~~~~-- 204 (328)
T d1nw3a_ 138 DLVAQMIDEI-K---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR-------KWMKW-- 204 (328)
T ss_dssp HHHHHHHHHS-C---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHH-------HHHHH--
T ss_pred HHHHHHHHHc-C---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHH-------HHhhh--
Confidence 4455555432 1 4578899999999999999765544 3479999999999999987653210 00000
Q ss_pred cCcccccccccccCccceeeeccCCcCCCCCCCC--ceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCC
Q 021836 219 VPLQGQREKNKKVGSKKVKIAKKGISADFTPETG--RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 296 (307)
Q Consensus 219 ~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~ 296 (307)
.. ....+|+|.++|+. ..+..+. ..|+|++++. .|.+ ++...+.++.+.|||||.+++.+.+.+
T Consensus 205 ~g----------~~~~~i~~~~gd~~-~~~~~~~~~~advi~~~~~-~f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~ 270 (328)
T d1nw3a_ 205 YG----------KKHAEYTLERGDFL-SEEWRERIANTSVIFVNNF-AFGP--EVDHQLKERFANMKEGGRIVSSKPFAP 270 (328)
T ss_dssp HT----------CCCCCEEEEECCTT-SHHHHHHHHHCSEEEECCT-TTCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cc----------ccCCceEEEECccc-ccccccccCcceEEEEcce-ecch--HHHHHHHHHHHhCCCCcEEEEecccCC
Confidence 00 01123455555543 2211122 3578887543 3544 778899999999999999999887666
Q ss_pred CCcc
Q 021836 297 SGTF 300 (307)
Q Consensus 297 ~~~~ 300 (307)
.++-
T Consensus 271 ~~~~ 274 (328)
T d1nw3a_ 271 LNFR 274 (328)
T ss_dssp TTCC
T ss_pred CCcc
Confidence 5543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=1.1e-11 Score=107.25 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=78.4
Q ss_pred CCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 150 ~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
+.....+++.+|||+|||+|..+..+..... .+|+++|+|+.|++.+++++...+. +.....+..
T Consensus 66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~--------~~~i~~d~~----- 132 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN--------IVPILGDAT----- 132 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT--------EEEEECCTT-----
T ss_pred ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCC--------ceEEEEECC-----
Confidence 3334467899999999999999997655432 3899999999999999998764321 122222221
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
....+......+|+|++.. .|.. +...+++++.+.|||||.+++...
T Consensus 133 ---------------~~~~~~~~~~~vD~i~~d~--~~~~--~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 133 ---------------KPEEYRALVPKVDVIFEDV--AQPT--QAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp ---------------CGGGGTTTCCCEEEEEECC--CSTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------CcccccccccceEEEEEEc--cccc--hHHHHHHHHHHhcccCCeEEEEEE
Confidence 0012333346799988743 3444 568899999999999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=111.98 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=75.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||||||+|.++..+++.+..+|+++|.|+.+...++ .....+. ...+.+...++.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~-~~~~~~~-----~~~i~~~~~~~~-------------- 94 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMD-IIRLNKL-----EDTITLIKGKIE-------------- 94 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHH-HHHHTTC-----TTTEEEEESCTT--------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHH-HHHHhCC-----CccceEEEeeHH--------------
Confidence 56789999999999999666556678999999998875443 3322221 233445555554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChh-HHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-dl~~~l~~l~~~LkpGG~lii 290 (307)
++..+.++||+|++.+..+++..+ .+..++....+.|||||.++-
T Consensus 95 ---------~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 95 ---------EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ---------TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ---------HhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 555556899999998776665443 467778888899999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=1.4e-11 Score=105.00 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=75.4
Q ss_pred ceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
..|||||||+|..+..++..... .++|+|+++.++..|.+++...+.. ++.+...++.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~------Ni~~~~~da~--------------- 91 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP------NIKLLWVDGS--------------- 91 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS------SEEEEECCSS---------------
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc------cceeeecCHH---------------
Confidence 47999999999999987777665 7999999999999998887654432 2445555443
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhH------HHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d------l~~~l~~l~~~LkpGG~lii~ 291 (307)
++... .+++++|.|++.+.--+..... ...+++.+.++|||||.|++.
T Consensus 92 ----~l~~~--~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 92 ----DLTDY--FEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp ----CGGGT--SCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ----HHhhh--ccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 11111 2467899998765432111110 168999999999999999885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1.3e-11 Score=109.29 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=75.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++.... .+|+++|+++.+++.|++++...++. ..+.+...
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-----~~v~~~~~------------- 162 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-----ERVTIKVR------------- 162 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-----GGEEEECC-------------
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-----cCcEEEec-------------
Confidence 55889999999999999997655432 38999999999999999998655431 12222222
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
|+...+ ....||.|+. +++ +...+++++.++|||||.|++..
T Consensus 163 ---------d~~~~~--~~~~~D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 163 ---------DISEGF--DEKDVDALFL-----DVP--DPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp ---------CGGGCC--SCCSEEEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred ---------cccccc--cccceeeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEe
Confidence 221122 3567998875 566 44788999999999999998754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.1e-11 Score=108.26 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
.+..++...+... ...+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+.
T Consensus 93 eTE~lv~~~l~~~-----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---------- 157 (274)
T d2b3ta1 93 DTECLVEQALARL-----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---------- 157 (274)
T ss_dssp THHHHHHHHHHHS-----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC----------
T ss_pred chhhhhhhHhhhh-----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc----------
Confidence 3445555555432 235678999999999999987666654 899999999999999998754322
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchh-------------hhhCCh----------hHHH
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWC-------------IGHLTD----------DDFV 272 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~-------------l~~~~~----------~dl~ 272 (307)
.+|+|.+.|+...+ ..++||+|+|+-. +.|-+. ....
T Consensus 158 ------------------~~v~~~~~d~~~~~--~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~ 217 (274)
T d2b3ta1 158 ------------------KNIHILQSDWFSAL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV 217 (274)
T ss_dssp ------------------CSEEEECCSTTGGG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHH
T ss_pred ------------------ccceeeeccccccc--CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHH
Confidence 12445555554443 2568999998732 111110 1346
Q ss_pred HHHHHHHHcCCCCcEEEE
Q 021836 273 SFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 273 ~~l~~l~~~LkpGG~lii 290 (307)
.+++.+.+.|+|||.+++
T Consensus 218 ~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 218 HIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 789999999999999988
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.1e-11 Score=115.86 Aligned_cols=137 Identities=13% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceee
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 218 (307)
.++..++..+- .+++.++||||||+|.++..++... ..+++|+|+|+.|++.|+++....+. ....+.
T Consensus 203 ~~i~~Il~~l~----Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~-------~~~~~g 271 (406)
T d1u2za_ 203 NFLSDVYQQCQ----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKK-------RCKLYG 271 (406)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHH-------HHHHTT
T ss_pred HHHHHHHHHhC----CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhh-------hhhhhc
Confidence 45555555331 4578999999999999999766554 34899999999999999987643110 000000
Q ss_pred cCcccccccccccCccceeeeccCCcCCCC-CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 219 VPLQGQREKNKKVGSKKVKIAKKGISADFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 219 ~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
.... ...+.+.......... ..-..+|+|++++. .|. +++...+.++.+.|||||.|++.+.+.+.
T Consensus 272 ~~~~----------~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 272 MRLN----------NVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp BCCC----------CEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccc----------cceeeeeechhhccccccccccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 0000 0000000000000000 00135688887643 343 47899999999999999999998876655
Q ss_pred Ccc
Q 021836 298 GTF 300 (307)
Q Consensus 298 ~~~ 300 (307)
+.-
T Consensus 339 ~~~ 341 (406)
T d1u2za_ 339 TYQ 341 (406)
T ss_dssp TCC
T ss_pred chh
Confidence 543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=4.9e-11 Score=102.24 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=75.1
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+|||||||+|+.+. +++...+ +|+++|.++.+++.|++++...+..|
T Consensus 76 l~~g~~VLeIGsGsGY~ta-ila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n-------------------------- 128 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAA-LISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-------------------------- 128 (215)
T ss_dssp CCTTCCEEEECCTTSHHHH-HHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--------------------------
T ss_pred cCccceEEEecCCCChhHH-HHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce--------------------------
Confidence 4578899999999999998 5666544 69999999999999999986554322
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+.+.++|....++ ..++||.|++..++.++++ .+...|+|||.+++.
T Consensus 129 --v~~~~gd~~~g~~-~~~pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 129 --VHVILGDGSKGFP-PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp --EEEEESCGGGCCG-GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred --eEEEECccccCCc-ccCcceeEEeecccccCCH--------HHHHhcCCCCEEEEE
Confidence 3344444433443 3678999999988877763 256679999999875
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=2.9e-11 Score=109.94 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=79.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++. ..+.+.+.|...
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-----~~~~~~~~d~~~------------- 206 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAFE------------- 206 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHHH-------------
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-----ccceeeechhhh-------------
Confidence 57899999999999999877776778999999999999999998765542 233444444320
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCCh-------hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~-------~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
....+.....+||+|++.-...-... .+..+++..+.++|+|||+|++..+
T Consensus 207 ------~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 207 ------EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp ------HHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred ------hhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 00011113568999997532111111 1346688899999999999999765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.2e-11 Score=108.76 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=73.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
..++.+|||+|||+|.++..++.... .+|+++|+++.+++.|++++...+.. ... .... .-
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~-----~~~----~~~~--------~~ 158 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS-----WKL----SHVE--------EW 158 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH-----HTT----TCSS--------CC
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh-----hhh----hhhh--------cc
Confidence 45889999999999999997665533 28999999999999999887532100 000 0000 00
Q ss_pred ccceeeeccCCcCCC-CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADF-TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~-~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..++++...|+.... ......||.|++ .++++ ..++.++.++|||||.|++.-.
T Consensus 159 ~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 159 PDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp CCCEEEEESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred ccceeEEecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeC
Confidence 133445555443221 123568999986 44533 5679999999999999987543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.6e-10 Score=99.26 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
...|+..+... .++.+|||+|||+|..+.+++.... .+|+.+|.++...+.|++++...+.. ..+.
T Consensus 47 ~g~lL~~L~~~-------~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-----~~i~ 114 (219)
T d2avda1 47 QAQLLANLARL-------IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-----HKID 114 (219)
T ss_dssp HHHHHHHHHHH-------TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-----TTEE
T ss_pred HHHHHHHHHHc-------cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-----ceEE
Confidence 35666666652 2567999999999999998766543 38999999999999999998765542 2344
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
+...+... .... + ......++||+|+... .+......+..+.+.|+|||++++ ||+.
T Consensus 115 ~~~Gda~e--------------~l~~-~--~~~~~~~~fD~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~-Dn~l 171 (219)
T d2avda1 115 LRLKPALE--------------TLDE-L--LAAGEAGTFDVAVVDA-----DKENCSAYYERCLQLLRPGGILAV-LRVL 171 (219)
T ss_dssp EEESCHHH--------------HHHH-H--HHTTCTTCEEEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEE-ECCS
T ss_pred EEEeehhh--------------cchh-h--hhhcccCCccEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEE-eCCc
Confidence 44443320 0000 0 0011256899999853 233567788899999999999877 8999
Q ss_pred CCCcccCCC
Q 021836 296 RSGTFLLSH 304 (307)
Q Consensus 296 ~~~~~~d~~ 304 (307)
..|.++|+.
T Consensus 172 ~~G~v~~~~ 180 (219)
T d2avda1 172 WRGKVLQPP 180 (219)
T ss_dssp GGGGGGSCC
T ss_pred ccCcccCcc
Confidence 989888764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.08 E-value=1.1e-10 Score=100.87 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccce
Q 021836 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (307)
Q Consensus 139 ~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~ 216 (307)
-.|+..+.... ++.+|||+|+++|..+..++.... .+|+.+|.++...+.|++++...++ ...+.+
T Consensus 48 g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~ 115 (227)
T d1susa1 48 GQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDF 115 (227)
T ss_dssp HHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEE
T ss_pred HHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceee
Confidence 45666666522 567999999999999998766544 3899999999999999999876544 234445
Q ss_pred eecCcccccccccccCccceeeeccCCcCCC---CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 217 FCVPLQGQREKNKKVGSKKVKIAKKGISADF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 217 ~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
...+.. +....+ ....++||+|+.-. .+......++.+.+.|+|||++++ ||
T Consensus 116 ~~g~a~-------------------~~L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~-DN 170 (227)
T d1susa1 116 REGPAL-------------------PVLDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGY-DN 170 (227)
T ss_dssp EESCHH-------------------HHHHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEE-ET
T ss_pred eehHHH-------------------HHHHHHHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEE-cc
Confidence 444432 000011 01246899999843 233567888999999999998877 89
Q ss_pred cCCCCcccCCCC
Q 021836 294 IARSGTFLLSHS 305 (307)
Q Consensus 294 ~~~~~~~~d~~~ 305 (307)
+...|.++++.+
T Consensus 171 vl~~G~v~~~~~ 182 (227)
T d1susa1 171 TLWNGSVVAPPD 182 (227)
T ss_dssp TTGGGGGGCCTT
T ss_pred CCCCCcccCCcc
Confidence 999998887654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.08 E-value=7.1e-11 Score=95.69 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=74.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||+|||+|.++...+.++..+|+++|.++.+++.+++++...+.. ..+.+++.|..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-----~~~~ii~~D~~-------------- 74 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-----NRFTLLKMEAE-------------- 74 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-----GGEEEECSCHH--------------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-----cchhhhccccc--------------
Confidence 56899999999999999888888889999999999999999998765432 23344444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHH--HcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~--~~LkpGG~lii~ 291 (307)
..+....++||+|++.-... .......+..+. +.|+|||.+++-
T Consensus 75 --------~~l~~~~~~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 75 --------RAIDCLTGRFDLVFLDPPYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp --------HHHHHBCSCEEEEEECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred --------ccccccccccceeEechhhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 11212357899999864321 123455566554 469999998873
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.05 E-value=1.6e-10 Score=100.85 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|.++..++++++. +++..|. |..++.+ . .. .+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~-----~~----------------------~r 125 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA-------P-----PL----------------------SG 125 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------C-----CC----------------------TT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc-------C-----CC----------------------CC
Confidence 4578999999999999998888876 8899997 3333211 0 01 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
|++...|..... + ..|+|++.+++|++++++...+|+++++.|+|||.++|.|.+.++
T Consensus 126 i~~~~gd~~~~~---p-~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~ 183 (244)
T d1fp1d2 126 IEHVGGDMFASV---P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183 (244)
T ss_dssp EEEEECCTTTCC---C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred eEEecCCccccc---c-cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence 444445543332 2 469999999999999998999999999999999999999987544
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=1.1e-10 Score=100.68 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=72.9
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREK 227 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (307)
+++.+|||||||+|+.|. +++... .+|+++|.++.+++.|++++...... ..
T Consensus 79 ~~g~~VLeIGtGsGY~ta-~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-----------~~-------- 138 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTA-CFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-----------ML-------- 138 (223)
T ss_dssp CTTCEEEEESCTTSHHHH-HHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-----------HH--------
T ss_pred CCCCeEEEecCCCCHHHH-HHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-----------hc--------
Confidence 477899999999999998 455432 27999999999999998876321000 00
Q ss_pred ccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 228 NKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 228 ~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+-.+|.+...|....++ +.++||.|++..++.++++ .+.+.|||||.+++.
T Consensus 139 ----~~~nv~~~~~d~~~~~~-~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 139 ----DSGQLLIVEGDGRKGYP-PNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp ----HHTSEEEEESCGGGCCG-GGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ----CccEEEEEecccccccc-cccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 01234455555544443 3578999999988877662 367899999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=3.4e-10 Score=99.63 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++..+++. ..+.+++.|..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~-----~~v~~~~~D~~-------------- 167 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNR-------------- 167 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTT--------------
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC-----ceEEEEEcchH--------------
Confidence 67899999999999999877666568999999999999999998765442 22334444433
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
++.. .+.||.|++...- .-..++..+.+.|+|||++.+.+++
T Consensus 168 ---------~~~~-~~~~D~Ii~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 168 ---------DFPG-ENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ---------TCCC-CSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------Hhcc-CCCCCEEEECCCC------chHHHHHHHHhhcCCCCEEEEEecc
Confidence 3432 5789999876331 1245677888899999999776553
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=3e-10 Score=102.84 Aligned_cols=111 Identities=19% Similarity=0.092 Sum_probs=77.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||++||+|.++..+ +.+..+|+++|+|+.+++.|++++...++. .+.++..+..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~-a~g~~~V~~vD~s~~al~~a~~n~~~ngl~------~~~~i~~d~~-------------- 203 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHL-ALGFREVVAVDSSAEALRRAEENARLNGLG------NVRVLEANAF-------------- 203 (318)
T ss_dssp CEEEEEEETCTTTHHHHHH-HHHEEEEEEEESCHHHHHHHHHHHHHTTCT------TEEEEESCHH--------------
T ss_pred CCCeeeccCCCCcHHHHHH-HhcCCcEEeecchHHHHHHHHHHHHHcCCC------CcceeeccHH--------------
Confidence 5689999999999999975 456668999999999999999998765542 2344444432
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCC-------hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~-------~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+....+....++||+|++.-...... ..+...++..+.++|+|||.|++..+
T Consensus 204 -----~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 204 -----DLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp -----HHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -----HHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 00001222356899999753211111 11346788999999999999998765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=9.4e-10 Score=95.88 Aligned_cols=101 Identities=12% Similarity=0.235 Sum_probs=77.4
Q ss_pred CceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..+|+|||||+|..+..++++++. ++++.|. +..++.+. .. .+|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------------~~----------------------~rv 125 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------------GS----------------------NNL 125 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------------CB----------------------TTE
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------------cc----------------------Cce
Confidence 468999999999999998888876 8999998 43332210 01 234
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC---cEEEEEeccCCC
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKENIARS 297 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG---G~lii~e~~~~~ 297 (307)
++...|..... ..+|++++.+++|++++++-..+|+++++.|+|| |.+++.|.+.++
T Consensus 126 ~~~~gD~f~~~----p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 126 TYVGGDMFTSI----PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp EEEECCTTTCC----CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred EEEecCcccCC----CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 45555543322 2579999999999999999999999999999999 789999987654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=1.3e-09 Score=93.15 Aligned_cols=126 Identities=10% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
...+|..++... ++.+|||+|||+|..|..++.... .+|+++|.++.+++.|++++...++ ...+.
T Consensus 44 ~G~lL~~lv~~~-------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~ 111 (214)
T d2cl5a1 44 KGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVT 111 (214)
T ss_dssp HHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEE
T ss_pred HHHHHHHHHHhh-------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccce
Confidence 345777776632 557999999999999997665443 3899999999999999988765433 22344
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCC--CCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+...+.. ++...+ ....++||+|++-..-.. . .....+.+..+.|+|||++ +.||
T Consensus 112 l~~Gd~~-------------------e~l~~l~~~~~~~~~D~ifiD~~~~~-~--~~~~~l~~~~~lLkpGGvI-v~Dd 168 (214)
T d2cl5a1 112 ILNGASQ-------------------DLIPQLKKKYDVDTLDMVFLDHWKDR-Y--LPDTLLLEKCGLLRKGTVL-LADN 168 (214)
T ss_dssp EEESCHH-------------------HHGGGHHHHSCCCCEEEEEECSCGGG-H--HHHHHHHHHTTCEEEEEEE-EESC
T ss_pred eeecccc-------------------ccccchhhcccccccceeeecccccc-c--ccHHHHHHHhCccCCCcEE-EEeC
Confidence 4444432 000011 012467999997532100 0 1123466777899999975 5588
Q ss_pred cCCCC
Q 021836 294 IARSG 298 (307)
Q Consensus 294 ~~~~~ 298 (307)
+...|
T Consensus 169 vl~~g 173 (214)
T d2cl5a1 169 VIVPG 173 (214)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87766
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.92 E-value=4.6e-10 Score=101.52 Aligned_cols=114 Identities=8% Similarity=0.019 Sum_probs=78.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+|||+.||+|.++..++..+..+|+++|+|+.+++.+++++..+++. ...+.++..|..
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~-------------- 205 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVF-------------- 205 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHH--------------
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHH--------------
Confidence 56799999999999999766666778999999999999999998655432 123344444442
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh-hh----hCC--hhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC-IG----HLT--DDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~-l~----~~~--~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.........++||+|++.-. +. ... ..+..++++.+.++|+|||+|++..+
T Consensus 206 -----~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 206 -----DYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp -----HHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -----HHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 000011113568999997421 10 000 12457789999999999999999766
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.88 E-value=1.8e-09 Score=90.96 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++... +.+.+.|+.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-----------~~~~~~D~~-------------- 102 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-----------VNFMVADVS-------------- 102 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-----------SEEEECCGG--------------
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-----------ccEEEEehh--------------
Confidence 4679999999999999876666667899999999999999988642 345566554
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchh
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWC 262 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~ 262 (307)
.+ +++||+|+++-.
T Consensus 103 ---------~l---~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 103 ---------EI---SGKYDTWIMNPP 116 (197)
T ss_dssp ---------GC---CCCEEEEEECCC
T ss_pred ---------hc---CCcceEEEeCcc
Confidence 43 478999998743
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.88 E-value=1.8e-09 Score=96.92 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=85.3
Q ss_pred ccchhcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccc
Q 021836 132 EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (307)
Q Consensus 132 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~ 211 (307)
..+....+.++...+... .++.+|||+.||+|.++..++..+. +|++||.|+.+++.|++++..+++. .
T Consensus 113 f~dqr~nr~~~~~~~~~~------~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~----~ 181 (309)
T d2igta1 113 FPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----Q 181 (309)
T ss_dssp CGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----T
T ss_pred ccchhHHHHHHHHHHhhc------cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhccc----C
Confidence 345666777777766532 2567999999999999997665554 7999999999999999988644332 1
Q ss_pred cccceeecCcccccccccccCccceeeeccCCcCCC---CCCCCceeeEEcchh-hhh-------CChhHHHHHHHHHHH
Q 021836 212 KATNFFCVPLQGQREKNKKVGSKKVKIAKKGISADF---TPETGRYDVIWVQWC-IGH-------LTDDDFVSFFKRAKV 280 (307)
Q Consensus 212 ~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fDlIi~~~~-l~~-------~~~~dl~~~l~~l~~ 280 (307)
..+++++.|+. ..+ .....+||+|++.-. +.. --..++..++..+.+
T Consensus 182 ~~~~~i~~D~~----------------------~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ 239 (309)
T d2igta1 182 APIRWICEDAM----------------------KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICRE 239 (309)
T ss_dssp SCEEEECSCHH----------------------HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCHH----------------------HhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHH
Confidence 22344444432 111 112468999997411 100 001245667888999
Q ss_pred cCCCCcEEEEEec
Q 021836 281 GLKPGGFFVLKEN 293 (307)
Q Consensus 281 ~LkpGG~lii~e~ 293 (307)
+|+|||.+++...
T Consensus 240 ll~~~g~~ll~t~ 252 (309)
T d2igta1 240 ILSPKALGLVLTA 252 (309)
T ss_dssp TBCTTCCEEEEEE
T ss_pred hcCCCCCEEEEec
Confidence 9999997666543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.9e-09 Score=88.63 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=74.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||++||+|.++.+.++++..+|++||.++.+++.+++++...+.. ...++..|..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~------~~~ii~~d~~-------------- 102 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG------NARVVNSNAM-------------- 102 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC------SEEEECSCHH--------------
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc------ceeeeeeccc--------------
Confidence 45799999999999999989999999999999999999999988643322 1223333322
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii 290 (307)
..+.....+||+|++.-.... .....++..+.+ .|+|+|++++
T Consensus 103 --------~~l~~~~~~fDlIf~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 103 --------SFLAQKGTPHNIVFVDPPFRR---GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp --------HHHSSCCCCEEEEEECCSSST---TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred --------ccccccccccCEEEEcCcccc---chHHHHHHHHHHCCCCCCCeEEEE
Confidence 122223578999999754321 234566666654 6999998887
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=2e-09 Score=88.62 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=41.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
++.+|||+|||+|.++...+.++. +++++|.++.+++.+++++...+.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~ 88 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL 88 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc
Confidence 567999999999999998777665 699999999999999998865443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=3.8e-09 Score=89.21 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
.+.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~ 92 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF 92 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc
Confidence 56799999999999999776666668999999999999999987643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=3.7e-09 Score=88.75 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++..+||++||+|..+..++..... +|+++|.++.|++.|++++..+ ..++.++..++.
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~----------- 82 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYR----------- 82 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGG-----------
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHh-----------
Confidence 347789999999999999998887644 8999999999999999988643 223445554443
Q ss_pred cceeeeccC-CcCCCCCCCCceeeEEcchhh---------hhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKG-ISADFTPETGRYDVIWVQWCI---------GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d-~~~~~~~~~~~fDlIi~~~~l---------~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+ +...+ ..++||.|+.-..+ ..+. .+...+..+.++|+|||.+++...
T Consensus 83 ------~~~~~~~~~--~~~~vdgIl~DlGvSs~Qld~~~r~~~--~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 83 ------EADFLLKTL--GIEKVDGILMDLGVSTYQLKGENRELE--NLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp ------GHHHHHHHT--TCSCEEEEEEECSCCHHHHHTSHTHHH--HHHHHHHHGGGGEEEEEEEEEEES
T ss_pred ------hHHHHHHHc--CCCCcceeeeccchhHhhhhhhhccch--hHHHHHHHHHHhcCCCCeeeeecc
Confidence 110 00011 24678988753221 1122 457889999999999999998764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.78 E-value=1.3e-08 Score=88.30 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
...+|||||||+|.++..++++++. ++++.|..+. ++.++ .. .+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------------~~----------------------~r 125 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------------SY----------------------PG 125 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------------CC----------------------TT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------------cC----------------------Cc
Confidence 3468999999999999999888876 8999998542 21110 01 23
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 297 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~~~ 297 (307)
+++...|....++ ..|++++.+++|+.++++...+|+++++.|+|||.+++.|.+.++
T Consensus 126 ~~~~~~d~~~~~P----~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~ 183 (243)
T d1kyza2 126 VEHVGGDMFVSIP----KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPV 183 (243)
T ss_dssp EEEEECCTTTCCC----CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECS
T ss_pred eEEecccccccCC----CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 3444444433332 357888999999999999999999999999999999999987543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.70 E-value=7.5e-09 Score=86.03 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.+|||++||+|.++.+.++++..+|++||.++.+++.+++++...+. ...+.+++.|...
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~------------- 102 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANR------------- 102 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHH-------------
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchh-------------
Confidence 5689999999999999999999998999999999999999998754322 2233444444320
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii 290 (307)
....+.....+||+|++.-... .......+..+.. .|+|+|++++
T Consensus 103 ------~l~~~~~~~~~fDlIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 103 ------ALEQFYEEKLQFDLVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp ------HHHHHHHTTCCEEEEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ------hhhhhcccCCCcceEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 0001111245899999865432 1245666777754 6999998876
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=3.3e-08 Score=86.12 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
.++..++..... ...+..+|||+|||+|.++..++..... +++|+|+|+.+++.|++++...++
T Consensus 46 ~~i~~l~~~~~~--~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l 110 (250)
T d2h00a1 46 HWVEDLIGHQDS--DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL 110 (250)
T ss_dssp HHHHHHHCCCCG--GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhcc--CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC
Confidence 455555532211 1234579999999999999976666544 899999999999999999876544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=5.9e-08 Score=85.43 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~ 205 (307)
+..+++|+|||+|.++..++...-.+|+++|+|+.+++.|++++...+.
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~ 158 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV 158 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC
Confidence 4468999999999999865433323899999999999999999876544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.60 E-value=1.4e-08 Score=89.88 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
++.+||-+|+|.|..+..++.....+|++||+++.+++.|++.+...... ..... ....+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~-------~~~~~-----------~~~d~rv 133 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGL-------LEAML-----------NGKHEKA 133 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTH-------HHHHH-----------TTCCSSE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccch-------hhhhh-----------ccCCCCc
Confidence 56899999999999999877655568999999999999999877422100 00000 0011233
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
++...|....+ ...++||+|++-..-..-.... -.++++.+++.|+|||++++-
T Consensus 134 ~i~~~Da~~~l-~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 134 KLTIGDGFEFI-KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEESCHHHHH-HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEChHHHHH-hccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 34433332221 1256899999642211100011 168999999999999998873
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=4.5e-08 Score=87.95 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=71.6
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||.||+|.|..+..+++.. ..+|++||+++.+++.|++.+...+. +.....+++++..
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~---------------- 139 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVID---------------- 139 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEES----------------
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEc----------------
Confidence 56799999999999999876553 34899999999999999988632100 0001122333333
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh--hhhC-ChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC--IGHL-TDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~--l~~~-~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
|....+...+++||+|++-.. ...- .... -.++++.+++.|+|||++++-
T Consensus 140 ------Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 140 ------DARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp ------CHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ------hHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 322222223568999995321 1100 0001 168999999999999999873
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.47 E-value=2.9e-07 Score=76.16 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=73.1
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
.+.++||+-||||.++.+.++++..+|+.||.+...++..++++...+..+ ....+...+..
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~----~~~~~~~~d~~-------------- 104 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS----EQAEVINQSSL-------------- 104 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT----TTEEEECSCHH--------------
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc----ccccccccccc--------------
Confidence 457999999999999999999999999999999999999999886543321 11112122111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHH--cCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~--~LkpGG~lii 290 (307)
+.. .......+||+|++--.... . ....++..+.. .|+++|++++
T Consensus 105 -----~~l-~~~~~~~~fDlIFlDPPY~~-~--~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 105 -----DFL-KQPQNQPHFDVVFLDPPFHF-N--LAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp -----HHT-TSCCSSCCEEEEEECCCSSS-C--HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----ccc-cccccCCcccEEEechhHhh-h--hHHHHHHHHHHhCCcCCCcEEEE
Confidence 000 11122457999998654321 2 45667777754 7999998877
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=1.1e-07 Score=84.68 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||-||+|.|..+..+++.. ..+|++||+++.+++.|++.+.... ..+. .++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~--------------~~~~----------d~r 144 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS--------------CGFD----------DPR 144 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH--------------GGGG----------CTT
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc--------------cccc----------CCC
Confidence 46799999999999999876544 3489999999999999998763210 0000 123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhh-CChhH--HHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGH-LTDDD--FVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~-~~~~d--l~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++-..-.. ..... -.++++.+++.|+|||++++-
T Consensus 145 v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 145 AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 333333333233223578999996432111 00001 278999999999999999874
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.43 E-value=1.1e-07 Score=85.01 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||-||.|.|.++..+++.. ..+|+.||+++.+++.|++.+..... .... ++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~d----------------------pr 161 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSH----------------------PK 161 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGC----------------------TT
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCC----------------------CC
Confidence 45789999999999999876643 35899999999999999988753210 0011 22
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChh--HHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++-..-..-... --.++++.+++.|+|||+++.-
T Consensus 162 v~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 162 LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred eEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 3333333222222235789999964221111111 1278899999999999999884
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.3e-07 Score=83.80 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||-+|.|.|..+..+++.. ..+|+.+|+++.+++.|++.+.... ... ...+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~--------------~~~----------~d~r 133 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--------------IGY----------SSSK 133 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--------------GGG----------GCTT
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc--------------ccc----------CCCC
Confidence 55799999999999999876543 4589999999999999998763210 000 0123
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchh--hhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~--l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++-.. ..-...---.++++.+++.|+|||++++-
T Consensus 134 v~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 134 LTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 334433333222223568999996421 11000001267899999999999999874
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.37 E-value=1.8e-07 Score=82.44 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=72.5
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||-||.|.|..+..+++.. ..+|+.||+++.+++.|++.+..... .. +..+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~--------------~~----------~d~r 130 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--------------KL----------DDPR 130 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--------------TT----------TSTT
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc--------------cc----------cCCC
Confidence 55799999999999999876543 45899999999999999987632100 00 0122
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChh--HHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~--dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++...|....+....++||+|++-..-..-... --.++++.+++.|+|||+++.-
T Consensus 131 ~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 131 VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 3333333332222235789999964221000000 1278999999999999998874
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=1.8e-06 Score=72.68 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=80.2
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+++++.+..-..- ++.+|+|+|+|.|.-+..++..++. +++.+|.+..-+...++.....++. ++.
T Consensus 50 ~~rHi~DSl~~~~~~-----~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~------nv~ 118 (207)
T d1jsxa_ 50 LVRHILDSIVVAPYL-----QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE------NIE 118 (207)
T ss_dssp HHHHHHHHHHHGGGC-----CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS------SEE
T ss_pred HHHHhcchHhhhhhh-----cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc------cee
Confidence 456777776542221 3468999999999888865545554 8999999998777776655444332 244
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
+++..++ .+. ...+||+|++..+- .+..++.-+...+++||.+++.
T Consensus 119 v~~~R~E-----------------------~~~-~~~~fD~V~sRA~~------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 119 PVQSRVE-----------------------EFP-SEPPFDGVISRAFA------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp EEECCTT-----------------------TSC-CCSCEEEEECSCSS------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred eeccchh-----------------------hhc-cccccceehhhhhc------CHHHHHHHHHHhcCCCcEEEEE
Confidence 4455444 332 24689999987652 5678899999999999999886
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.31 E-value=5.9e-07 Score=79.65 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.+.+||-+|.|.|..+..+++... .++++||+++.+++.+++.+.... ... ..++
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~--------------~~~----------~~~r 135 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--------------IGY----------EDPR 135 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--------------GGG----------GSTT
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh--------------ccc----------cCCC
Confidence 567999999999999998665433 489999999999999998763210 000 0122
Q ss_pred eeeeccCCcCCCC-CCCCceeeEEcchh--hhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 236 VKIAKKGISADFT-PETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 236 i~~~~~d~~~~~~-~~~~~fDlIi~~~~--l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
++++..|....+. ...++||+|++-.. ......---.++++.+++.|+|||++++-
T Consensus 136 ~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 136 VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 3333333222221 12468999996321 11000001278999999999999999884
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.30 E-value=5.7e-07 Score=80.69 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=68.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhc----CC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY----FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNK 229 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~----~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (307)
+++.+|||.|||+|.+...++... .. +++|+|+++.++..|+.++...+. ...+...+.
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------~~~~~~~d~-------- 180 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDG-------- 180 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCT--------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------hhhhhcccc--------
Confidence 466899999999999988765432 11 699999999999999876532111 111222221
Q ss_pred ccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh----------------HHHHHHHHHHHcCCCCcEEEEE
Q 021836 230 KVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD----------------DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 230 ~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~----------------dl~~~l~~l~~~LkpGG~lii~ 291 (307)
... ...++||+|+++-.+...... .-..++..+.+.|+|||.++++
T Consensus 181 --------------~~~--~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 181 --------------LAN--LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp --------------TSC--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred --------------ccc--cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 111 235789999998554321111 1234799999999999987664
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.21 E-value=2e-06 Score=73.86 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=40.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
..++.+|||||||+|.+|..++.. ..+|+++|+++.+++.+++++.
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~ 64 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLV 64 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhh
Confidence 457889999999999999987765 5579999999999999998874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.04 E-value=1.8e-06 Score=72.26 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=30.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHH
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLD 194 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~ 194 (307)
.++.+|||.|||+|.+...+...... .++|+|+++..+.
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~ 58 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD 58 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence 36689999999999998876665443 6999999876543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=1.6e-05 Score=71.68 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=49.6
Q ss_pred hcHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCC
Q 021836 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM 206 (307)
Q Consensus 136 ~~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~ 206 (307)
.....+++.++...- ..++.+|||+-||+|.++.. ++..+.+|+|+|.++.+++.|++++..++..
T Consensus 195 ~~~e~l~~~v~~~~~----~~~~~~vlDLycG~G~fsl~-La~~~~~V~gvE~~~~ai~~A~~na~~n~i~ 260 (358)
T d1uwva2 195 GVNQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLP-LATQAASVVGVEGVPALVEKGQQNARLNGLQ 260 (358)
T ss_dssp HHHHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHH-HHTTSSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHHHHHHHHhhc----cCCCceEEEecccccccchh-ccccccEEEeccCcHHHHHHHHHhHHhcccc
Confidence 344455555544221 33567999999999999996 5677778999999999999999988765543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.96 E-value=1e-06 Score=76.20 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
.++.+|||||||+|.+|..++.. ..+|+++|+++.+++.+++++.. ..++.+++.|+.
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l------------- 85 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDIL------------- 85 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCT-------------
T ss_pred CCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh--------ccchhhhhhhhh-------------
Confidence 46789999999999999987665 55799999999998877666532 223444445444
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHH
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFF 275 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l 275 (307)
++..+...++.|+++... |++.+-+..++
T Consensus 86 ----------~~~~~~~~~~~vv~NLPY-~Ist~il~~~l 114 (245)
T d1yuba_ 86 ----------QFQFPNKQRYKIVGNIPY-HLSTQIIKKVV 114 (245)
T ss_dssp ----------TTTCCCSSEEEEEEECCS-SSCHHHHHHHH
T ss_pred ----------ccccccceeeeEeeeeeh-hhhHHHHHHHh
Confidence 444445566667766553 67644444444
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=9.1e-06 Score=69.69 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred cHHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 137 ~~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
..+++++.+...... ......+++|+|+|.|.-+..+...... +++.+|.+..=+...+......++.| +.
T Consensus 52 ~~rHi~DSl~~~~~~--~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n------~~ 123 (239)
T d1xdza_ 52 YLKHFYDSITAAFYV--DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN------TT 123 (239)
T ss_dssp HHHTHHHHHGGGGTS--CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS------EE
T ss_pred HHHhccchhhhhhhh--cccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC------cE
Confidence 456677766432211 1124568999999999888854333443 79999999986666555444333322 33
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCC---CCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+++..++ .+. ...++||+|++..+- .+..++.-+...+++||.+++.-
T Consensus 124 i~~~R~E-----------------------~~~~~~~~~~~~D~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 124 FCHDRAE-----------------------TFGQRKDVRESYDIVTARAVA------RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp EEESCHH-----------------------HHTTCTTTTTCEEEEEEECCS------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEeehhh-----------------------hccccccccccceEEEEhhhh------CHHHHHHHHhhhcccCCEEEEEC
Confidence 3344333 111 124689999997652 66888999999999999998854
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.88 E-value=0.00015 Score=61.88 Aligned_cols=104 Identities=13% Similarity=-0.016 Sum_probs=57.6
Q ss_pred CCCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
.+..+|+|+|||+|.++..++... ...+.|+++.-.. ...+.. ...+.. .
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~-------~~~~~~--------------n 115 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIP-------MSTYGW--------------N 115 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCC-------CCSTTG--------------G
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCcc-------cccccc--------------c
Confidence 467899999999999999644332 1257777763220 000000 000000 1
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChh-----HHHHHHHHHHHcCCCCcEEEEE
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDD-----DFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~-----dl~~~l~~l~~~LkpGG~lii~ 291 (307)
.+++...+....+ +++..|+|+|-..-. -+.. ....+++-+.+.|+|||.|++.
T Consensus 116 i~~~~~~~dv~~l--~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 116 LVRLQSGVDVFFI--PPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp GEEEECSCCTTTS--CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cccchhhhhHHhc--CCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 1222222211122 357899999864322 1111 1246778888999999998885
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.85 E-value=2.7e-05 Score=63.98 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
+.++..++|+.+|.|..+..++... .+|+|+|.++.+++.+++.. ...+.++......-+.
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~-------- 76 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKR-------- 76 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHH--------
T ss_pred CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHH--------
Confidence 3478899999999999999998875 47999999999999998753 2234455544430000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcch-----hhhhCCh--hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQW-----CIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~-----~l~~~~~--~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
..... ..+++|.|+.-. -+....+ ..+...|......|+|||.+++...
T Consensus 77 --------~l~~~--~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 77 --------HLAAL--GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp --------HHHHT--TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --------HHHHc--CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 00011 135688888532 1211111 1345678899999999999988653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.56 E-value=0.00017 Score=63.91 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
+.++.+|||+.||+|.=|..++..... .++++|.++.-+...++++...+..| +.....+..
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~------i~~~~~d~~---------- 177 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN------VILFHSSSL---------- 177 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS------EEEESSCGG----------
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc------ccccccccc----------
Confidence 447889999999999988866554332 69999999999999888776554432 112222211
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEc----c--hhhhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWV----Q--WCIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~----~--~~l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~e 292 (307)
.+......||.|++ + .++.. ....+ ..+++.++.+.|||||.++.+.
T Consensus 178 -------------~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 178 -------------HIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp -------------GGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------ccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 11122567999884 2 11111 11112 2577899999999999988864
Q ss_pred c
Q 021836 293 N 293 (307)
Q Consensus 293 ~ 293 (307)
-
T Consensus 245 C 245 (313)
T d1ixka_ 245 C 245 (313)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.54 E-value=5.2e-05 Score=69.09 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCceEEEEeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccc
Q 021836 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKK 235 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 235 (307)
++.+|||..||+|..++..+.. ...+|+++|+|+..++.+++++..++..+........ .......
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~-------------~~~~~~~ 111 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRA-------------ILKGEKT 111 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEE-------------EEESSSE
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccc-------------cccccce
Confidence 4578999999999999865543 4558999999999999999988644332100000000 0001223
Q ss_pred eeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 236 VKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 236 i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+.+.+.|....+......||+|.+-- +. ....++..+.+.++.||+|.++-.
T Consensus 112 ~~~~~~Da~~~~~~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 112 IVINHDDANRLMAERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp EEEEESCHHHHHHHSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEeehhhhhhhhHhhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEec
Confidence 34444443222211245799998743 22 226789999999999999999744
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.50 E-value=7.3e-05 Score=63.64 Aligned_cols=114 Identities=10% Similarity=0.032 Sum_probs=62.0
Q ss_pred HHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHh---c--CCcEEEEeCCHHHHHHHHHHhCCCCCCCccccccc
Q 021836 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---Y--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (307)
Q Consensus 140 ~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~---~--~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~ 214 (307)
.++..++... ++.+|||||++.|..+..+..- . -.+|+++|+.+........ ...++
T Consensus 70 ~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----------~~~~I 131 (232)
T d2bm8a1 70 AVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENI 131 (232)
T ss_dssp HHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTE
T ss_pred HHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----------cccce
Confidence 4455566533 5679999999999877743321 1 2389999987532211110 12233
Q ss_pred ceeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 215 NFFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 215 ~~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
.++..+.... +..+.+ ....+|+|+.-.. |.....+.. + .+...|+|||++++-|.+
T Consensus 132 ~~i~gDs~~~-----------------~~~~~l--~~~~~dlIfID~~--H~~~~v~~~-~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 132 TLHQGDCSDL-----------------TTFEHL--REMAHPLIFIDNA--HANTFNIMK-W-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp EEEECCSSCS-----------------GGGGGG--SSSCSSEEEEESS--CSSHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred eeeecccccH-----------------HHHHHH--HhcCCCEEEEcCC--cchHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence 4444332200 000011 2345788876443 433323333 3 356899999999997753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.45 E-value=0.00019 Score=66.16 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=68.9
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC--------------CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF--------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~--------------~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d 220 (307)
+.++.+|+|-.||+|.+...+..... ..+.|+|+++.+...|+-++.-.+.. .....+...+
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----~~~~~i~~~d 235 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 235 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----cccceeecCc
Confidence 34678999999999999876554321 24999999999999998665322111 0111222222
Q ss_pred cccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh---------------hHHHHHHHHHHHcCCCC
Q 021836 221 LQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD---------------DDFVSFFKRAKVGLKPG 285 (307)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~---------------~dl~~~l~~l~~~LkpG 285 (307)
. ... ....+||+|+++-.+..-.. ..-..++..+.+.|+||
T Consensus 236 ~----------------------l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 236 S----------------------LEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp T----------------------TTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred h----------------------hhh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 1 111 13568999998755432110 01245899999999999
Q ss_pred cEEEEE
Q 021836 286 GFFVLK 291 (307)
Q Consensus 286 G~lii~ 291 (307)
|.++++
T Consensus 292 G~~~iI 297 (425)
T d2okca1 292 GRAAVV 297 (425)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 987664
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00034 Score=60.94 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=40.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
..++..|||||+|+|.+|..++... .+|+++|+++.+++..++.+..
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~ 65 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG 65 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhh
Confidence 3467899999999999999887665 5799999999999999988754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00018 Score=58.67 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=61.4
Q ss_pred CCCceEEEEeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~--~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+|||+||++|.++..+..... ..++++|+.+- . . -....++..++........
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~--~------i~~~~~~~~d~~~~~~~~~---- 79 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D--P------IVGVDFLQGDFRDELVMKA---- 79 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C--C------CTTEEEEESCTTSHHHHHH----
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c--c------cCCceEeecccccchhhhh----
Confidence 3678999999999999997665433 37999997541 0 0 1223444554431000000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhh--------hCChhH-HHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIG--------HLTDDD-FVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~--------~~~~~d-l~~~l~~l~~~LkpGG~lii~e 292 (307)
+ ......+++|+|++-.... |...-+ ....+.-+.+.|++||.|++.-
T Consensus 80 ---------~--~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 80 ---------L--LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp ---------H--HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------h--hhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 0 0001246799999753321 111011 2456778889999999999864
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00022 Score=62.36 Aligned_cols=111 Identities=18% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+.++.+|||+.+|+|.=|..++.... ..|+++|+++.-+...++++...+..+ ......+..
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~------~~~~~~~~~----------- 162 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA------TVKQGDGRY----------- 162 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC------EEEECCTTC-----------
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc------eeeeccccc-----------
Confidence 44778999999999998887665443 379999999999999988887665432 111111110
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEc----c--hhhhh-------CChhH-------HHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWV----Q--WCIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~----~--~~l~~-------~~~~d-------l~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.... ...+.||.|++ + .++.. .+..+ ...+|.++.+.|||||.|+.+.-
T Consensus 163 ----------~~~~-~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 163 ----------PSQW-CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp ----------THHH-HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ----------cchh-cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 0011 12467999993 2 22221 12111 25788999999999999988643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=8.5e-05 Score=64.00 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.++..|||||||+|.+|..++. ...+|+++|+++.+++..+++.
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~ 63 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGE-RLDQLTVIELDRDLAARLQTHP 63 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHT-TCSCEEEECCCHHHHHHHHTCT
T ss_pred CCCCEEEEECCCchHHHHHHHc-cCCceEEEEeccchhHHHHHHh
Confidence 3678899999999999998665 4567999999999999998754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0018 Score=56.48 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=41.7
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHhCCCCCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHM 206 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~--~~~v~~vD~s~~~l~~A~~~~~~~~~~ 206 (307)
+.++.+|||++||+|.-|..++... ...|+++|+++.-++.+++++...+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~ 145 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS 145 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc
Confidence 3477899999999999888665543 237999999999999999888776553
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00023 Score=67.42 Aligned_cols=114 Identities=13% Similarity=-0.005 Sum_probs=66.4
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccc
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~-------------------~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~ 215 (307)
+.++.+|+|-.||+|.+........ ...++|+|+++.+...|+-++--.+... .
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~-------~ 234 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-------N 234 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC-------B
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc-------c
Confidence 3466799999999999887544321 1158999999999999886653221110 0
Q ss_pred eeecCcccccccccccCccceeeeccCCcCCCCCCCCceeeEEcchhhhhCCh------------hHHHHHHHHHHHcCC
Q 021836 216 FFCVPLQGQREKNKKVGSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLK 283 (307)
Q Consensus 216 ~~~~d~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~------------~dl~~~l~~l~~~Lk 283 (307)
....+. +...+....-.....+||+|+++-.+..-.. ..--.++..+.+.|+
T Consensus 235 i~~~~~----------------~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 298 (524)
T d2ar0a1 235 LDHGGA----------------IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH 298 (524)
T ss_dssp GGGTBS----------------EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred ccccch----------------hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc
Confidence 000000 0000000000012457999998754421110 012358999999999
Q ss_pred CCcEEEEE
Q 021836 284 PGGFFVLK 291 (307)
Q Consensus 284 pGG~lii~ 291 (307)
|||.+.++
T Consensus 299 ~gGr~aiI 306 (524)
T d2ar0a1 299 PGGRAAVV 306 (524)
T ss_dssp EEEEEEEE
T ss_pred ccCcEEEE
Confidence 99987765
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0069 Score=53.38 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=39.4
Q ss_pred CCceEEEEeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+..|||||+|.|.+|..++... ..+|+++|+++.+.+..++.+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~ 88 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE 88 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence 46789999999999999888764 4589999999999999988764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.87 E-value=0.0076 Score=47.43 Aligned_cols=106 Identities=17% Similarity=0.030 Sum_probs=61.8
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+||-+||| .|..+..+++....+|+++|.++.-++.|++..... .+ ..+....+..
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~-----------~~-~~~~~~~~~~------ 85 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV-----------TL-VVDPAKEEES------ 85 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE-----------EE-ECCTTTSCHH------
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE-----------EE-eccccccccc------
Confidence 3467889999988 455666555554458999999999999998754211 00 1100000000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.+ .+. .. ..+.+|+|+-.-. -...+..+.+.++|+|.+++.-.
T Consensus 86 ---~~~~-~~~-~~--~g~g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 86 ---SIIE-RIR-SA--IGDLPNVTIDCSG--------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp ---HHHH-HHH-HH--SSSCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ---hhhh-hhh-cc--cccCCceeeecCC--------ChHHHHHHHHHHhcCCceEEEec
Confidence 0000 000 00 1356898874321 13557788899999999998754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.43 E-value=0.037 Score=49.27 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCCCceeeEEcchhhhhCCh-------------------------------hHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 249 PETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 249 ~~~~~fDlIi~~~~l~~~~~-------------------------------~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
++.++.|++++++++|+++. .|+..+|+.=++-|+|||.++++-.
T Consensus 135 fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 135 FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 45789999999988888642 1556788888888999999998643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.40 E-value=0.026 Score=44.80 Aligned_cols=105 Identities=19% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||-+|||. |..+..++.... .+|+++|.++.-++.+++.-... .++....+.. .
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~---~------ 87 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL---------TLNRRETSVE---E------ 87 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE---------EEETTTSCHH---H------
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE---------EEeccccchH---H------
Confidence 34678999999874 566665555444 37999999999999997642210 1111001100 0
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. ...+. +.. ....+|+|+-.-. . ...++.+.+.|+|||.+++.-.
T Consensus 88 -----~-~~~i~-~~~-~~~g~Dvvid~vG--~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 88 -----R-RKAIM-DIT-HGRGADFILEATG--D------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp -----H-HHHHH-HHT-TTSCEEEEEECSS--C------TTHHHHHHHHEEEEEEEEECCC
T ss_pred -----H-HHHHH-Hhh-CCCCceEEeecCC--c------hhHHHHHHHHhcCCCEEEEEee
Confidence 0 00000 111 2346999985321 0 2346778899999999988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.0043 Score=49.07 Aligned_cols=45 Identities=16% Similarity=0.012 Sum_probs=34.9
Q ss_pred CCCCceEEEEecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcG-tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++.
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence 4478899999998 56666655555444899999999999999775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.013 Score=46.34 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=61.5
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||-.|+ |.|..+..++....-+|++++.+++-.+.+++.-.. ..+++...++. .+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~---------~vi~~~~~~~~-----~~--- 88 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH---------EVFNHREVNYI-----DK--- 88 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS---------EEEETTSTTHH-----HH---
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc---------cccccccccHH-----HH---
Confidence 457789999996 566777766655555799999899888888754211 11111011110 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. ... ....+|+|+.... ...+....+.|+|+|.+++.-
T Consensus 89 ----------i~-~~t-~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 89 ----------IK-KYV-GEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ----------HH-HHH-CTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred ----------hh-hhh-ccCCceEEeeccc---------HHHHHHHHhccCCCCEEEEEe
Confidence 00 111 2457999997532 235777889999999999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.20 E-value=0.021 Score=46.35 Aligned_cols=110 Identities=10% Similarity=-0.089 Sum_probs=64.0
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||-+|||. |..+..+++. ...+|+++|.++.-++.|++.-... .+.....++. .+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~---------~~~~~~~~~~-----~~--- 85 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI---------ADLSLDTPLH-----EQ--- 85 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE---------EETTSSSCHH-----HH---
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE---------EEeCCCcCHH-----HH---
Confidence 45788999999998 5455544433 3448999999999999998753210 0000011110 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchh-------hhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWC-------IGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~-------l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
.. ++. ....+|+++-.-. ...+........++.+.+.++|||.+++.-.
T Consensus 86 -------i~----~~t-~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 86 -------IA----ALL-GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp -------HH----HHH-SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred -------HH----HHh-CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 00 111 1346888883211 0011111235679999999999999998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.06 E-value=0.02 Score=45.54 Aligned_cols=103 Identities=13% Similarity=-0.083 Sum_probs=62.4
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=+|||. |..+..+++... ..|+.+|.++.-++.|++.-... .+++...+-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~---------~i~~~~~~~~---------- 86 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD---------CLNPRELDKP---------- 86 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE---------EECGGGCSSC----------
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc---------ccCCccchhh----------
Confidence 45778999999988 666665555443 37999999999888887753211 1111000000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCC-cEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpG-G~lii~e~ 293 (307)
+..... .. ..+.+|+++-.-. ....+....+.++|| |.+++.-.
T Consensus 87 ---~~~~~~----~~--~~~G~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 87 ---VQDVIT----EL--TAGGVDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp ---HHHHHH----HH--HTSCBSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred ---hhhhHh----hh--hcCCCcEEEEecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence 000000 01 1457899874321 145688899999996 99988643
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.05 E-value=0.0054 Score=52.15 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=32.9
Q ss_pred CceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHh
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~ 200 (307)
..+|||+-||.|..+..++ ....+|+++|-++.+....+..+
T Consensus 89 ~~~VlD~TaGlG~Da~vlA-~~G~~V~~iEr~p~l~~ll~d~l 130 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLA-SVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_dssp CCCEEETTCTTCHHHHHHH-HHTCCEEEEECCHHHHHHHHHHH
T ss_pred CCEEEECCCcccHHHHHHH-hCCCEEEEEccCHHHHHHHHHHH
Confidence 3589999999999999654 44457999999998766665443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.04 E-value=0.014 Score=46.38 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=61.7
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~-~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=+|||. |..+..+++... .+|+++|.++.-++.+++.-.. ..+++...+.. .+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~---------~~i~~~~~~~~-----~~--- 87 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT---------DILNYKNGHIE-----DQ--- 87 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS---------EEECGGGSCHH-----HH---
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc---------ccccccchhHH-----HH---
Confidence 44778899899987 677776555443 3799999999999999765321 01111000000 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
+ .+.. ....+|+|+-.-.- ...++.+.+.++|+|.+++.-.
T Consensus 88 ----------v-~~~t-~g~G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 88 ----------V-MKLT-NGKGVDRVIMAGGG--------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp ----------H-HHHT-TTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred ----------H-HHHh-hccCcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEee
Confidence 0 0111 13469998853220 2346777889999999999654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.026 Score=44.33 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCCCceEEEEeccccHHHH-HHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRITK-NLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~-~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=+|||+..... .++... ..+|+++|.++.-++.|++.-... ++...-+......+
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~------------~~~~~~~~~~~~~~--- 88 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL------------VLQISKESPQEIAR--- 88 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE------------EEECSSCCHHHHHH---
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc------------cccccccccccccc---
Confidence 4467889999997765444 333333 337999999999999997653211 11110000000000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
... .. ....+|+|+-.-. -...++.+.+.+++||.+++.-.
T Consensus 89 -----~~~----~~---~g~g~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 89 -----KVE----GQ---LGCKPEVTIECTG--------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp -----HHH----HH---HTSCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred -----ccc----cc---CCCCceEEEeccC--------CchhHHHHHHHhcCCCEEEEEec
Confidence 000 00 1346898885322 14467889999999999999754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.92 E-value=0.039 Score=43.48 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=59.9
Q ss_pred CCCCceEEEEeccccHH-HHHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGIGRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~-t~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=+|||.-.. +..+++. +...|+.+|.++.-++.+++.-.. .++...-+ +...+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------------~~i~~~~~--~~~~~--- 88 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQ--DPVAA--- 88 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTS--CHHHH---
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------------EEEeCCCc--CHHHH---
Confidence 45788999999976443 3333333 344788999999999998765321 11111111 00000
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
++ .+ .++.+|+|+-.-. -...++.+.+.++|+|.+++.-
T Consensus 89 ------i~-----~~--t~gg~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 89 ------IK-----EI--TDGGVNFALESTG--------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp ------HH-----HH--TTSCEEEEEECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ------HH-----HH--cCCCCcEEEEcCC--------cHHHHHHHHhcccCceEEEEEe
Confidence 00 11 2457999984321 1456778899999999998864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.75 E-value=0.062 Score=45.67 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~ 203 (307)
+..+++.++... .+++..|||.=||+|..+.. +.....+.+|+|+++.+++.|++++...
T Consensus 236 P~~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~A-A~~lgR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 236 PAKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLV-AERESRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTHHHHHHHHHH-----CCTTCEEEETTCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred chHHHHHhhhhc-----ccCCCEEEecCCCCcHHHHH-HHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 346666666533 23788999999999999985 4455557999999999999999998653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.43 E-value=0.068 Score=43.99 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+..++..++... .+++..|||.=||+|..+.. +.....+.+|+|+++..++.|++++.
T Consensus 198 P~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~a-a~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIV-AKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh-----CCCCCEEEECCCCchHHHHH-HHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 345666666533 23778999999999999984 45556689999999999999998863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.98 E-value=0.059 Score=41.81 Aligned_cols=45 Identities=16% Similarity=0.032 Sum_probs=32.5
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+||=+|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~ 70 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL 70 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence 34677888899865 3444444444445899999999999998764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.86 E-value=0.22 Score=42.57 Aligned_cols=45 Identities=16% Similarity=-0.071 Sum_probs=39.4
Q ss_pred CCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+++|+|+=||.|.++..+-..++.-+.++|+++.+++.-+.+..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~ 54 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC
Confidence 568999999999999998766677778889999999999988875
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.60 E-value=0.28 Score=41.43 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=36.8
Q ss_pred ceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++|+|+=||.|.++..+-..++..+.++|+++...+.-+.++.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~ 43 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS 43 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC
Confidence 4799999999999987766688778899999999988887763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.24 E-value=0.17 Score=39.12 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=60.9
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCccccccccccc
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKV 231 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 231 (307)
.+++.+||=+|| |.|..+..++... ...|+++|.++.-++.+++.-... ++...-+ +...+
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~------------~i~~~~~--~~~~~-- 88 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY------------VINASMQ--DPLAE-- 88 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE------------EEETTTS--CHHHH--
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce------------eeccCCc--CHHHH--
Confidence 447789999997 3555566555543 458999999999999887653211 1111100 00000
Q ss_pred CccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 232 GSKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 232 ~~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. ... ..+.||+|+.... -...++.+.+.++|||.+++.-
T Consensus 89 -----------~~-~~~-~~~~~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 89 -----------IR-RIT-ESKGVDAVIDLNN--------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp -----------HH-HHT-TTSCEEEEEESCC--------CHHHHTTGGGGEEEEEEEEECC
T ss_pred -----------HH-HHh-hcccchhhhcccc--------cchHHHhhhhhcccCCEEEEec
Confidence 00 111 1456999986432 1445677889999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.24 E-value=0.47 Score=36.27 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=53.6
Q ss_pred eEEEEeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcccee
Q 021836 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKVK 237 (307)
Q Consensus 160 ~ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~ 237 (307)
+|.=||+|. +.++..+.+.+. +|++.|.+++.++.+++.-. +.....+.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~--------------- 53 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL------------VDEAGQDLS--------------- 53 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS------------CSEEESCGG---------------
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc------------cceeeeecc---------------
Confidence 566677763 234444333333 69999999999888765421 011111111
Q ss_pred eeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEE
Q 021836 238 IAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 291 (307)
Q Consensus 238 ~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~ 291 (307)
. -...|+|+..- +.....++++++...|+++-+++-.
T Consensus 54 --------~----~~~~DiIilav-----p~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 54 --------L----LQTAKIIFLCT-----PIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp --------G----GTTCSEEEECS-----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred --------c----ccccccccccC-----cHhhhhhhhhhhhhhcccccceeec
Confidence 1 24579888643 3346788899999999998876543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.91 E-value=0.12 Score=40.78 Aligned_cols=47 Identities=9% Similarity=-0.140 Sum_probs=34.9
Q ss_pred CCCCceEEEEeccccHHHH-HHHHhc-CCcEEEEeCCHHHHHHHHHHhC
Q 021836 155 NNQHLVALDCGSGIGRITK-NLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~-~ll~~~-~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
.+++.+|+=+|||...+.. .+++.. ..+|+++|.+++-++.|++.-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 4578899999998655443 333333 3589999999999999988753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.84 E-value=0.13 Score=39.65 Aligned_cols=45 Identities=13% Similarity=-0.126 Sum_probs=32.3
Q ss_pred CCCCceEEEEeccccHHH-HHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRIT-KNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t-~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+||=.|||+-... ..++.....+|+++|.++.-++.+++.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~ 70 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL 70 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence 346788888998775443 333444444899999999999988764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.55 E-value=0.14 Score=42.65 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHHHHHhccCCCccCCCCceEEEEeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 138 ~~~~l~~ll~~~~~~~~~~~~~~ILDiGcGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
+..++..++... ..++..|||.=||+|..+.+ +.....+.+|+|+++...+.|++++.
T Consensus 193 P~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~A-a~~lgR~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 193 PAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARV-AIQEGRNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp CHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHH-HHHHTCEEEEEESSTHHHHHHHHHHH
T ss_pred chhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHH-HHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence 345666666533 23778999999999999885 44555689999999999999999885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.82 E-value=0.21 Score=39.12 Aligned_cols=45 Identities=9% Similarity=-0.201 Sum_probs=33.7
Q ss_pred CCCCceEEEEeccccHHHH-HHHHh-cCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITK-NLLIR-YFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~-~ll~~-~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+||=+|||...... .+++. +..+|+++|.++.-++.+++.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 5578899999998665444 33333 345899999999999999875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.81 E-value=0.81 Score=34.90 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=54.0
Q ss_pred eEEEEeccc-c-HHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 160 VALDCGSGI-G-RITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 160 ~ILDiGcGt-G-~~t~~ll~~~~~-~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
+|+=||||. | .++..+.+.++. +|+++|.++..++.+++.... ........
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~------------~~~~~~~~-------------- 56 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------------DEGTTSIA-------------- 56 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGG--------------
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc------------hhhhhhhh--------------
Confidence 477789876 3 344444444443 799999999999999875311 01011111
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 289 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~li 289 (307)
.. .....|+|+..-. ......++..+...++++-+++
T Consensus 57 ---------~~--~~~~~dlIila~p-----~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 57 ---------KV--EDFSPDFVMLSSP-----VRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---------GG--GGTCCSEEEECSC-----HHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---------hh--hccccccccccCC-----chhhhhhhhhhhcccccccccc
Confidence 11 1235788886543 2356778888999998886554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.80 E-value=0.056 Score=42.77 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=35.7
Q ss_pred CCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|+=+|+|. |..+...+.....+|+.+|.++..++..+..+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~ 76 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG 76 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc
Confidence 568999999997 455555555666789999999999998887663
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.22 Score=42.54 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=35.9
Q ss_pred CceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhC
Q 021836 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 158 ~~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~ 201 (307)
+++|+|+-||.|.++..+-..++. -+.++|+++.+++.-+.++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~ 47 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC
Confidence 578999999999998876555664 36799999999998887764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.16 Score=39.45 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=58.2
Q ss_pred CCCCceEEEEeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 155 ~~~~~~ILDiGcGt-G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
.+++.+||=+|||. |.++..+++....+++++|.++.-++.+++.-.. .++...-. +
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad------------~~i~~~~~--~-------- 85 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD------------EVVNSRNA--D-------- 85 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEETTCH--H--------
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc------------EEEECchh--h--------
Confidence 44778888899864 4555555554444788899999888888764321 11111111 0
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
......+.+|+++-.-.- ...+....+.++|+|.+++.-.
T Consensus 86 ------------~~~~~~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 86 ------------EMAAHLKSFDFILNTVAA--------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------------HHHTTTTCEEEEEECCSS--------CCCHHHHHTTEEEEEEEEECCC
T ss_pred ------------HHHHhcCCCceeeeeeec--------chhHHHHHHHHhcCCEEEEecc
Confidence 000123579988853211 1225667789999999998643
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.66 E-value=0.43 Score=36.92 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=62.1
Q ss_pred CCCCceEEEEecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcG--tG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=.|+| .|..+..+++....+|++++.|+.-.+.+++.-.. ..+++...++. .+
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~---------~vi~~~~~d~~-----~~--- 88 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW---------QVINYREEDLV-----ER--- 88 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS---------EEEETTTSCHH-----HH---
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe---------EEEECCCCCHH-----HH---
Confidence 3467788888665 46677766666656899999999999998865321 11111111110 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+. +.. ....+|+|+..-. .+.+......|+|+|.+++....
T Consensus 89 ----------v~-~~t-~g~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 89 ----------LK-EIT-GGKKVRVVYDSVG---------RDTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp ----------HH-HHT-TTCCEEEEEECSC---------GGGHHHHHHTEEEEEEEEECCCT
T ss_pred ----------HH-HHh-CCCCeEEEEeCcc---------HHHHHHHHHHHhcCCeeeecccc
Confidence 00 111 2467999886432 12356788899999998875443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.59 E-value=0.54 Score=41.23 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCceEEEEeccccHHHHHHHHhcC------C--cEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIGRITKNLLIRYF------N--EVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG~~t~~ll~~~~------~--~v~~vD~s~~~l~~A~~~~~ 201 (307)
++..|+|+|+|+|.++..++.... . +++.+|+|+.+.+.-++.+.
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 457899999999999987765421 1 58999999998887777664
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.50 E-value=0.24 Score=38.44 Aligned_cols=99 Identities=13% Similarity=-0.078 Sum_probs=59.5
Q ss_pred CCCceEEEEeccccHHH-HHHHHh-cCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCc
Q 021836 156 NQHLVALDCGSGIGRIT-KNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGS 233 (307)
Q Consensus 156 ~~~~~ILDiGcGtG~~t-~~ll~~-~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 233 (307)
+++.+||=+|+|..... ..++.. +...|+++|.++.-++.+++..... ++...-+ ....
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~------------~i~~~~~---~~~~---- 91 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH------------VVDARRD---PVKQ---- 91 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE------------EEETTSC---HHHH----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce------------eecCccc---HHHH----
Confidence 36788999999765444 334433 4458999999999888888654211 1111100 0000
Q ss_pred cceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 234 KKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 234 ~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
.. ... ....+|+|+-.-. -...++...+.|++||.+++.-
T Consensus 92 ---------~~-~~~-~~~g~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 92 ---------VM-ELT-RGRGVNVAMDFVG--------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp ---------HH-HHT-TTCCEEEEEESSC--------CHHHHHHGGGGEEEEEEEEECC
T ss_pred ---------HH-Hhh-CCCCceEEEEecC--------cchHHHHHHHHHhCCCEEEEEe
Confidence 00 111 1346998885332 1345788899999999999865
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.75 E-value=0.33 Score=37.63 Aligned_cols=46 Identities=11% Similarity=-0.148 Sum_probs=33.5
Q ss_pred CCCCceEEEEeccccHHHH-HHHHhc-CCcEEEEeCCHHHHHHHHHHh
Q 021836 155 NNQHLVALDCGSGIGRITK-NLLIRY-FNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~-~ll~~~-~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+++.+||=+|+|.+..+. .+++.. ..+|+++|.++.-.+.+++.-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 5578899999997654333 333333 348999999999999887764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.28 E-value=0.23 Score=38.75 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=58.9
Q ss_pred CCCCceEEEEe--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiG--cGtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=.| .|.|..+..++.....+++++..+++-.+.+++.-.. ..+.+...++. .+
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~---------~vi~~~~~~~~-----~~--- 85 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE---------YVGDSRSVDFA-----DE--- 85 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS---------EEEETTCSTHH-----HH---
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc---------ccccCCccCHH-----HH---
Confidence 44677888876 3556677766665555788888888878877754211 11111011110 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEe
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 292 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e 292 (307)
+. +.. ....+|+|+..-. .+.++.+.+.|+++|.++..-
T Consensus 86 ----------v~-~~t-~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 86 ----------IL-ELT-DGYGVDVVLNSLA---------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp ----------HH-HHT-TTCCEEEEEECCC---------THHHHHHHHTEEEEEEEEECS
T ss_pred ----------HH-HHh-CCCCEEEEEeccc---------chHHHHHHHHhcCCCEEEEEc
Confidence 00 111 2457999997432 124667789999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.20 E-value=0.3 Score=38.51 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=61.1
Q ss_pred CCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCcc
Q 021836 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSK 234 (307)
Q Consensus 157 ~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 234 (307)
++.+||=-|+ |.|..+..+++....+|+++-.+++-.+.+++.-.. ..+++.....+
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~---------~vi~~~~~~~~------------ 89 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAE------------ 89 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------EEEECC-----------------
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc---------eeeecchhHHH------------
Confidence 5677888875 555677776666666899999988888888765321 11111000000
Q ss_pred ceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 235 KVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 235 ~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
. ......+.||+|+-.-. ...+....+.|+|||.++..-...
T Consensus 90 --------~--~~~~~~~gvD~vid~vg---------g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 90 --------R--IRPLDKQRWAAAVDPVG---------GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp --------------CCSCCEEEEEECST---------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred --------H--HHHhhccCcCEEEEcCC---------chhHHHHHHHhCCCceEEEeeccc
Confidence 0 01113568999886422 223778899999999999876543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.31 E-value=1.4 Score=34.14 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=61.9
Q ss_pred CCCCceEEEEeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccC
Q 021836 155 NNQHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVG 232 (307)
Q Consensus 155 ~~~~~~ILDiGcGt--G~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (307)
.+++.+||=.|++. |..+..+++....+|+++..+++-.+.+++.-... .+.....+.. .+
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~---------vi~~~~~~~~-----~~--- 89 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA---------AFNYKTVNSL-----EE--- 89 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE---------EEETTSCSCH-----HH---
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh---------hcccccccHH-----HH---
Confidence 45778999877754 45666666555568999999998888887653211 1111011100 00
Q ss_pred ccceeeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEec
Q 021836 233 SKKVKIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 293 (307)
Q Consensus 233 ~~~i~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~ 293 (307)
. . .. .....+|+|+-.- . .+.++.+.+.|+|||.+++.-+
T Consensus 90 --------~--~-~~-~~~~Gvd~v~D~v-----G----~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 90 --------A--L-KK-ASPDGYDCYFDNV-----G----GEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp --------H--H-HH-HCTTCEEEEEESS-----C----HHHHHHHGGGEEEEEEEEECCC
T ss_pred --------H--H-HH-hhcCCCceeEEec-----C----chhhhhhhhhccCCCeEEeecc
Confidence 0 0 00 1245799998632 2 3457889999999999998654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.02 E-value=0.068 Score=41.96 Aligned_cols=45 Identities=9% Similarity=-0.117 Sum_probs=32.6
Q ss_pred CCCCceEEEEec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGc--GtG~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~ 199 (307)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l 71 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL 71 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred CCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence 347788998884 345666666655555899999998888887754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.98 E-value=0.75 Score=35.26 Aligned_cols=46 Identities=11% Similarity=-0.211 Sum_probs=32.5
Q ss_pred CCCCceEEEEecccc-HHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHh
Q 021836 155 NNQHLVALDCGSGIG-RITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG-~~t~~ll~~~-~~~v~~vD~s~~~l~~A~~~~ 200 (307)
.+++.+||=.|||.. ..+..+++.. ...|+++|.++.-++.+++.-
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG 73 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC
Confidence 457889998888732 3444444433 458999999999999888653
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=83.73 E-value=5.1 Score=33.65 Aligned_cols=111 Identities=10% Similarity=-0.002 Sum_probs=64.1
Q ss_pred ceEEEEeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHhCCCCCCCcccccccceeecCcccccccccccCccce
Q 021836 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQGQREKNKKVGSKKV 236 (307)
Q Consensus 159 ~~ILDiGcGtG~~t~~ll~~~~~--~v~~vD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 236 (307)
..|+.+|||.=.-...+ .... ++.=+|. +.+++.-++.+.+.+... .....+...|+.. .+.+
T Consensus 91 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~---~~~~~~v~~Dl~~--~~~~------- 155 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTP---TADRREVPIDLRQ--DWPP------- 155 (297)
T ss_dssp CEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCC---SSEEEEEECCTTS--CHHH-------
T ss_pred CeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCC---CceEEEecccccc--hHHH-------
Confidence 45777999887665532 2223 4666664 777776666664332211 1112223333320 0000
Q ss_pred eeeccCCcCCCCCCCCceeeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEE
Q 021836 237 KIAKKGISADFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 290 (307)
Q Consensus 237 ~~~~~d~~~~~~~~~~~fDlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii 290 (307)
.+. ...+..+.-=++++-.++.|++.++...+++.+.....||..|++
T Consensus 156 ~L~------~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~ 203 (297)
T d2uyoa1 156 ALR------SAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV 203 (297)
T ss_dssp HHH------HTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred HHH------hcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 000 001112334566677789999999999999999999999999887
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.97 E-value=0.47 Score=37.70 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=35.0
Q ss_pred CCceEEEEecccc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhC
Q 021836 157 QHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (307)
Q Consensus 157 ~~~~ILDiGcGtG-~~t~~ll~~~~~~v~~vD~s~~~l~~A~~~~~ 201 (307)
++.+|+=||+|.- ..+...+.....+|+.+|.++..++..++...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 5689999999975 44554455566689999999999999887653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.38 E-value=1 Score=34.46 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=33.6
Q ss_pred CCCCceEEEEeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHH
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARES 199 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~--~~~~v~~vD~s~~~l~~A~~~ 199 (307)
.+++.+|+=+|||.+......+.. ...+|+++|.+++-++.+++.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 557889999999986554433333 234899999999999988765
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=81.53 E-value=0.36 Score=40.35 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCceeeEEcchhhhh-C------ChhHHHHHHHHHHHcCCCCcEEEEEecc
Q 021836 251 TGRYDVIWVQWCIGH-L------TDDDFVSFFKRAKVGLKPGGFFVLKENI 294 (307)
Q Consensus 251 ~~~fDlIi~~~~l~~-~------~~~dl~~~l~~l~~~LkpGG~lii~e~~ 294 (307)
+..+++|+++-.... + ....+..+...+.+.+.....++++.+.
T Consensus 165 ~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it~~~ 215 (249)
T d1o9ga_ 165 GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 215 (249)
T ss_dssp TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEEEeCch
Confidence 456799999854322 2 2234678888899999887888888763
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=80.38 E-value=1.3 Score=39.30 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=38.3
Q ss_pred CCCCceEEEEeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHhCC
Q 021836 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP 202 (307)
Q Consensus 155 ~~~~~~ILDiGcGtG~~t~~ll~~~---~~~v~~vD~s~~~l~~A~~~~~~ 202 (307)
.+++..++|+||-.|..+..++... ..+|+++|+++...+..++++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 3466799999999999887665543 34799999999999999877643
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.35 E-value=8.4 Score=32.74 Aligned_cols=40 Identities=5% Similarity=0.184 Sum_probs=32.5
Q ss_pred eeEEcchhhhhCChhHHHHHHHHHHHcCCCCcEEEEEeccC
Q 021836 255 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 295 (307)
Q Consensus 255 DlIi~~~~l~~~~~~dl~~~l~~l~~~LkpGG~lii~e~~~ 295 (307)
=++++-.++.|++.++..++++.+.+..+ +|.|++-|.+.
T Consensus 195 Tl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~ 234 (328)
T d1rjda_ 195 TIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIG 234 (328)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred eEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCC
Confidence 46777788999999899999999988874 56777778874
|