Citrus Sinensis ID: 021842

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------

MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV

cccHHHHHHccccccccEEEEEEEEEcccccccccEEEEccccccccccccccccccccccccccccccEEEEccEEEEcccccccEEEEEEEEEcccccccccccHHHHHHHHHHccccccccEEEccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccc

ccHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHcHcHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc

MSLLSDLLNLNLSESTDKIIAEYIWIggsgmdmrskartlpgpvsdpsklpkwnydgsstgqapgedsevilypqaifkdpfrrgnnilvmcdaytpagepiptnkrhaaakifshsdvvaeepwygiEQEYTLLQKdvkwplgwpiggypgpqgpyycgvgadkawgrdivDSHYKACLYAGinisgingevmpgqwefqvgpavgisagDQLWVARYILERITEIAGvvlsfdpkpiqgdwngagahanystksmrndgGFEVIKKAIEKLGLRHSEHIAAygegnerrltgkhetadintfkwv

MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLpgpvsdpsklpKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANystksmrndgGFEVIKKAIEKLGLRHSEHIAAygegnerrltgkhetadintfkwv

MsllsdllnlnlsesTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLgwpiggypgpqgpyycgvgADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV

*******LNLNLSESTDKIIAEYIWIGG*****************************************VILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYST***RNDGGFEVIKKAIEKLGLRHSEHIAAY***********************

**LLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV

MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYD********GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV

MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS*****GEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNE***********INTFKW*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		307	2.2.26 [Sep-21-2011]
P32289		356	Glutamine synthetase nodu	N/A	no	0.996	0.859	0.918	1e-169
Q42899		356	Glutamine synthetase cyto	N/A	no	0.996	0.859	0.901	1e-168
P51118		356	Glutamine synthetase cyto	no	no	0.996	0.859	0.901	1e-167
P51119		356	Glutamine synthetase cyto	yes	no	0.996	0.859	0.908	1e-167
Q56WN1		356	Glutamine synthetase cyto	yes	no	0.996	0.859	0.901	1e-167
P04078		356	Glutamine synthetase cyto	N/A	no	0.996	0.859	0.898	1e-166
P12424		356	Glutamine synthetase OS=N	N/A	no	0.996	0.859	0.901	1e-165
Q43785		356	Glutamine synthetase nodu	N/A	no	0.996	0.859	0.885	1e-165
P00965		356	Glutamine synthetase N-1	N/A	no	0.996	0.859	0.885	1e-164
P52782		353	Glutamine synthetase nodu	N/A	no	0.996	0.866	0.885	1e-164

>sp\|P32289\|GLNA_VIGAC Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1	Back alignment and function desciption

 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/306 (91%), Positives = 297/306 (97%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFSH DVV
Sbjct: 61  GQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDV WPLGWP+GG+PGPQGPYYCG GADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPI+
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIK 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKW 306
           INTF W
Sbjct: 301 INTFLW 306

Vigna aconitifolia (taxid: 3918)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2

>sp\|Q42899\|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2	Back alignment and function description

>sp\|P51118\|GLNA1_VITVI Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1	Back alignment and function description

>sp\|P51119\|GLNA2_VITVI Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1	Back alignment and function description

>sp\|Q56WN1\|GLN11_ARATH Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2	Back alignment and function description

>sp\|P04078\|GLNA1_MEDSA Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1	Back alignment and function description

>sp\|P12424\|GLNA_NICPL Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1	Back alignment and function description

>sp\|Q43785\|GLNA3_MEDSA Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1	Back alignment and function description

>sp\|P00965\|GLNA3_PHAVU Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2	Back alignment and function description

>sp\|P52782\|GLNA_LUPLU Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
2213877		356	glutamine synthetase [Hevea brasiliensis	0.996	0.859	0.931	1e-170
417060		356	RecName: Full=Glutamine synthetase nodul	0.996	0.859	0.918	1e-167
159138927		356	glutamine synthetase [Gossypium raimondi	0.996	0.859	0.928	1e-167
159138921		356	glutamine synthetase [Gossypium herbaceu	0.996	0.859	0.928	1e-167
159138925		356	glutamine synthetase [Gossypium hirsutum	0.996	0.859	0.928	1e-167
159138923		356	glutamine synthetase [Gossypium hirsutum	0.996	0.859	0.928	1e-167
159138929		356	glutamine synthetase [Gossypium hirsutum	0.996	0.859	0.924	1e-166
147798954		356	hypothetical protein VITISV_015673 [Viti	0.996	0.859	0.911	1e-166
224065130		358	predicted protein [Populus trichocarpa]	0.996	0.854	0.911	1e-166
599656		356	glutamate--ammonia ligase [Brassica napu	0.996	0.859	0.911	1e-166

>gi\|2213877\|gb\|AAB61597.1\| glutamine synthetase [Hevea brasiliensis]	Back alignment and taxonomy information

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/306 (93%), Positives = 300/306 (98%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS++TDKIIAEYIWIGGSGMDMRSKARTL GPVSDPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTDKIIAEYIWIGGSGMDMRSKARTLSGPVSDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSH DVV
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQ+DVKWP+GWP+GGYPGPQGPYYC +GADK++GRD+VDSHYK+CL
Sbjct: 121 AEEPWYGIEQEYTLLQRDVKWPIGWPLGGYPGPQGPYYCSIGADKSFGRDVVDSHYKSCL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPIQ
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQ 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTKSMR+DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMRHDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKW 306
           INTF W
Sbjct: 301 INTFLW 306

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|417060\|sp\|P32289.1\|GLNA_VIGAC RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase gi\|170637\|gb\|AAA34239.1\| glutamine synthetase [Vigna aconitifolia] gi\|1094850\|prf\|\|2106409A Gln synthetase	Back alignment and taxonomy information

>gi\|159138927\|gb\|ABW89463.1\| glutamine synthetase [Gossypium raimondii]	Back alignment and taxonomy information

>gi\|159138921\|gb\|ABW89460.1\| glutamine synthetase [Gossypium herbaceum] gi\|159138933\|gb\|ABW89466.1\| glutamine synthetase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|159138925\|gb\|ABW89462.1\| glutamine synthetase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|159138923\|gb\|ABW89461.1\| glutamine synthetase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|159138929\|gb\|ABW89464.1\| glutamine synthetase [Gossypium hirsutum] gi\|159138931\|gb\|ABW89465.1\| glutamine synthetase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|147798954\|emb\|CAN68162.1\| hypothetical protein VITISV_015673 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224065130\|ref\|XP_002301683.1\| predicted protein [Populus trichocarpa] gi\|222843409\|gb\|EEE80956.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|599656\|emb\|CAA58118.1\| glutamate--ammonia ligase [Brassica napus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		307
TAIR\|locus:2151739		356	GSR 1 "glutamine synthase clon	0.947	0.817	0.845	2e-136
TAIR\|locus:2174175		356	GLN1;4 "glutamine synthetase 1	0.947	0.817	0.838	1.6e-134
TAIR\|locus:2088580		354	GLN1.3 "glutamine synthetase 1	0.947	0.822	0.817	1.2e-131
TAIR\|locus:2198080		353	GLN1;5 "glutamine synthetase 1	0.947	0.824	0.769	2.1e-125
TAIR\|locus:2165897		430	GS2 "glutamine synthetase 2" [	0.947	0.676	0.749	2e-120
FB\|FBgn0001145		369	Gs2 "Glutamine synthetase 2" [	0.915	0.761	0.559	3.2e-81
SGD\|S000006239		370	GLN1 "Glutamine synthetase (GS	0.908	0.754	0.532	2.9e-80
WB\|WBGene00001604		388	gln-3 [Caenorhabditis elegans	0.921	0.729	0.544	2e-79
UNIPROTKB\|G4NG12		358	MGG_14279 "Glutamine synthetas	0.921	0.790	0.529	1.1e-78
ASPGD\|ASPL0000016342		357	glnA [Emericella nidulans (tax	0.921	0.792	0.519	3.8e-78

TAIR\|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 246/291 (84%), Positives = 262/291 (90%)

Query:    16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
             TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct:    16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75

Query:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
             AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+FS+ DV AE PWYGIEQEYTLL
Sbjct:    76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLL 135

Query:   136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
             QKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMP
Sbjct:   136 QKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMP 195

Query:   196 GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 255
             GQWEFQVGPAVGISA D++WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTK
Sbjct:   196 GQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTK 255

Query:   256 SMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKW 306
             SMR +GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF W
Sbjct:   256 SMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLW 306

GO:0003824 "catalytic activity" evidence=IEA

GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR\|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

SGD\|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

WB\|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22504	GLNA1_DAUCA	6, ., 3, ., 1, ., 2	0.8169	0.9934	0.8664	N/A	no
Q43785	GLNA3_MEDSA	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8595	N/A	no
Q8GXW5	GLN15_ARATH	6, ., 3, ., 1, ., 2	0.8247	0.9478	0.8243	no	no
P32288	GLNA_YEAST	6, ., 3, ., 1, ., 2	0.5862	0.9120	0.7567	yes	no
P14654	GLN12_ORYSJ	6, ., 3, ., 1, ., 2	0.8431	0.9967	0.8571	no	no
P14656	GLN11_ORYSJ	6, ., 3, ., 1, ., 2	0.8758	0.9967	0.8595	yes	no
P04771	GLNA2_PHAVU	6, ., 3, ., 1, ., 2	0.8823	0.9967	0.8595	N/A	no
P08282	GLNA1_PEA	6, ., 3, ., 1, ., 2	0.8679	0.9869	0.8535	N/A	no
P15102	GLNA4_PHAVU	6, ., 3, ., 1, ., 2	0.7941	0.9967	0.7132	N/A	no
P04770	GLNA1_PHAVU	6, ., 3, ., 1, ., 2	0.8790	0.9967	0.8595	N/A	no
Q9LVI8	GLN13_ARATH	6, ., 3, ., 1, ., 2	0.8725	0.9967	0.8644	no	no
Q43066	GLNA4_PEA	6, ., 3, ., 1, ., 2	0.8692	0.9967	0.8571	N/A	no
O00088	GLNA_AGABI	6, ., 3, ., 1, ., 2	0.5913	0.9641	0.8361	N/A	no
P25462	GLNAC_MAIZE	6, ., 3, ., 1, ., 2	0.7755	0.9869	0.7163	N/A	no
P04078	GLNA1_MEDSA	6, ., 3, ., 1, ., 2	0.8986	0.9967	0.8595	N/A	no
Q06378	GLNA3_HORVU	6, ., 3, ., 1, ., 2	0.8537	0.9576	0.8258	N/A	no
Q8LCE1	GLN12_ARATH	6, ., 3, ., 1, ., 2	0.8660	0.9967	0.8595	no	no
Q6FMT6	GLNA_CANGA	6, ., 3, ., 1, ., 2	0.5937	0.9185	0.7580	yes	no
P14636	GLNA3_LUPAN	6, ., 3, ., 1, ., 2	0.8594	0.9967	0.9714	N/A	no
P23712	GLNA_LACSA	6, ., 3, ., 1, ., 2	0.8660	0.9967	0.8547	N/A	no
Q9FMD9	GLN14_ARATH	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8595	no	no
O82560	GLNA2_SOYBN	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8595	no	no
P38562	GLNA4_MAIZE	6, ., 3, ., 1, ., 2	0.8692	0.9967	0.8619	N/A	no
P38563	GLNA5_MAIZE	6, ., 3, ., 1, ., 2	0.8398	0.9967	0.8571	N/A	no
P38560	GLNA2_MAIZE	6, ., 3, ., 1, ., 2	0.8398	0.9934	0.8288	N/A	no
P38561	GLNA3_MAIZE	6, ., 3, ., 1, ., 2	0.8594	0.9967	0.8595	N/A	no
O04867	GLNA1_ALNGL	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8595	N/A	no
Q96UV5	GLNA_HEBCY	6, ., 3, ., 1, ., 2	0.6041	0.9250	0.8022	N/A	no
Q42624	GLNAC_BRANA	6, ., 3, ., 1, ., 2	0.7875	0.9967	0.7149	N/A	no
Q56WN1	GLN11_ARATH	6, ., 3, ., 1, ., 2	0.9019	0.9967	0.8595	yes	no
Q4W8D0	GLN13_ORYSJ	6, ., 3, ., 1, ., 2	0.8229	0.9934	0.8243	no	no
P51118	GLNA1_VITVI	6, ., 3, ., 1, ., 2	0.9019	0.9967	0.8595	no	no
P51119	GLNA2_VITVI	6, ., 3, ., 1, ., 2	0.9084	0.9967	0.8595	yes	no
O22506	GLNA2_DAUCA	6, ., 3, ., 1, ., 2	0.7745	0.9967	0.7083	N/A	no
P13564	GLNA2_HORVU	6, ., 3, ., 1, ., 2	0.7614	0.9967	0.7050	N/A	no
P52782	GLNA_LUPLU	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8668	N/A	no
P52783	GLNA_PINSY	6, ., 3, ., 1, ., 2	0.8262	0.9934	0.8543	N/A	no
P24099	GLNA1_SOYBN	6, ., 3, ., 1, ., 2	0.8660	0.9934	0.8591	no	no
P20478	GLNA2_DROME	6, ., 3, ., 1, ., 2	0.5928	0.9706	0.8075	yes	no
Q9XQ94	GLNA2_MEDSA	6, ., 3, ., 1, ., 2	0.7973	0.9967	0.7149	N/A	no
Q42899	GLNA1_LOTJA	6, ., 3, ., 1, ., 2	0.9019	0.9967	0.8595	N/A	no
P38559	GLNA1_MAIZE	6, ., 3, ., 1, ., 2	0.8366	0.9967	0.8571	N/A	no
P12424	GLNA_NICPL	6, ., 3, ., 1, ., 2	0.9019	0.9967	0.8595	N/A	no
P32289	GLNA_VIGAC	6, ., 3, ., 1, ., 2	0.9183	0.9967	0.8595	N/A	no
P07694	GLNA3_PEA	6, ., 3, ., 1, ., 2	0.8725	0.9967	0.8571	N/A	no
P00965	GLNA3_PHAVU	6, ., 3, ., 1, ., 2	0.8856	0.9967	0.8595	N/A	no
P08281	GLNA2_PEA	6, ., 3, ., 1, ., 2	0.7908	0.9967	0.7116	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.1	0.983
3rd Layer	6.3.1.2	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_II2125	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (358 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)	•	•	0.946
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)	•	•	0.946
	gdcT1	precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)	•	•	0.926
	gdcT2	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)	•	•	0.926
	eugene3.00150904	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)	•	•	0.926
	eugene3.00130573	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (411 aa)	•	•	0.926
	estExt_fgenesh4_pg.C_LG_XIX0409	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (411 aa)	•	•	0.926
	estExt_fgenesh4_pg.C_2320019	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)	•	•	0.926
	estExt_fgenesh4_pm.C_1300024	SubName- Full=Putative uncharacterized protein; (588 aa)	•	•	0.912
	estExt_fgenesh4_pg.C_LG_XVI0276	SubName- Full=Putative uncharacterized protein; (1491 aa)	•	•	0.906

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		307
PLN02284		354	PLN02284, PLN02284, glutamine synthetase	0.0
PLN03036		432	PLN03036, PLN03036, glutamine synthetase; Provisio	0.0
pfam00120		259	pfam00120, Gln-synt_C, Glutamine synthetase, catal	1e-64
COG0174		443	COG0174, GlnA, Glutamine synthetase [Amino acid tr	3e-51
pfam03951		84	pfam03951, Gln-synt_N, Glutamine synthetase, beta-	1e-17
TIGR00653		459	TIGR00653, GlnA, glutamine synthetase, type I	1e-13
TIGR03105		435	TIGR03105, gln_synth_III, glutamine synthetase, ty	0.002

>gnl\|CDD\|177922 PLN02284, PLN02284, glutamine synthetase	Back alignment and domain information

 Score =  686 bits (1773), Expect = 0.0
 Identities = 286/306 (93%), Positives = 295/306 (96%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR  AAKIFSH DV 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGP VGISAGDQLWVARYILERITEIAGVV+SFDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETAD 300

Query: 301 INTFKW 306
           INTF W
Sbjct: 301 INTFSW 306

Length = 354

>gnl\|CDD\|178603 PLN03036, PLN03036, glutamine synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain	Back alignment and domain information

>gnl\|CDD\|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain	Back alignment and domain information

>gnl\|CDD\|233073 TIGR00653, GlnA, glutamine synthetase, type I	Back alignment and domain information

>gnl\|CDD\|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		307
PLN02284		354	glutamine synthetase	100.0
PLN03036		432	glutamine synthetase; Provisional	100.0
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	100.0
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	100.0
PRK09469		469	glnA glutamine synthetase; Provisional	100.0
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	100.0
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	100.0
KOG0683		380	consensus Glutamine synthetase [Amino acid transpo	100.0
COG3968		724	Uncharacterized protein related to glutamine synth	99.74
PF03951		84	Gln-synt_N: Glutamine synthetase, beta-Grasp domai	99.55
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	98.07
PRK13517		373	carboxylate-amine ligase; Provisional	97.75
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	97.73
PLN02611		482	glutamate--cysteine ligase	97.57
PRK13518		357	carboxylate-amine ligase; Provisional	97.38
PRK13515		371	carboxylate-amine ligase; Provisional	97.22
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	96.95
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	96.93
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	95.42
COG2170		369	Uncharacterized conserved protein [Function unknow	92.23
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	90.72
PF06877		104	RraB: Regulator of ribonuclease activity B; InterP	88.48
cd04869		81	ACT_GcvR_2 ACT domains that comprise the Glycine C	87.97
PF13740		76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	84.63
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	80.67

>PLN02284 glutamine synthetase	Back alignment and domain information

Probab=100.00  E-value=4.9e-77  Score=567.99  Aligned_cols=306  Identities=90%  Similarity=1.473  Sum_probs=273.1

Q ss_pred             ChhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCccccccCCCCcEEEEeeeeeec
Q 021842            1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (307)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~l   80 (307)
                      |+.++...++++++++..++++|+|+|+.++++|||.+.++.+.+.+++.++|+||||++|+..++++|++++|||++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~   80 (354)
T PLN02284          1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (354)
T ss_pred             CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence            56677888889999999999999999999999999999999999888888999999999988777899999999999999


Q ss_pred             CCCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccc
Q 021842           81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG  160 (307)
Q Consensus        81 Pw~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      ||.++++++|+||++++||+|++.|||++|+|+++++++.|+++++|+|+|||||+.+.....+++.++.+.++++||+.
T Consensus        81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~  160 (354)
T PLN02284         81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG  160 (354)
T ss_pred             CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence            99765589999999999999999999999999999999999999999999999998643222333322345567777776


Q ss_pred             cCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcC
Q 021842          161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ  240 (307)
Q Consensus       161 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~  240 (307)
                      .+.+..+.++++++++++|+++||+|+++|||+|||||||++.|.++|+|||+++++|++||+||++||+.|||||||+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~  240 (354)
T PLN02284        161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP  240 (354)
T ss_pred             cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence            66444456899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCceeeEEEeccCCCCCCCHHHHHHHHHHH-HHHHHHHHhHhCCCCCcCCCCCCCCCCCCCcccC
Q 021842          241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL-GLRHSEHIAAYGEGNERRLTGKHETADINTFKWV  307 (307)
Q Consensus       241 gd~~GsG~H~H~SL~~g~n~~gls~~~~fiaGl-L~h~~~~~a~~~~nsy~RL~~~~ea~~~~~~~~~  307 (307)
                      |+++|||||+|+|||+.+++++.+..+++++|+ |+|+++++++++ ||||||+|++|||....++||
T Consensus       241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~-NSYkRL~p~~eap~~~~~~wg  307 (354)
T PLN02284        241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGE-GNERRLTGKHETADINTFSWG  307 (354)
T ss_pred             CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhc-CcHhhcCCCccCcccccceee
Confidence            556999999999999743335667889999999 999999998875 999999999999998888886

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]	Back alignment and domain information

>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length	Back alignment and domain information

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains	Back alignment and domain information

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		307
2d3a_A		356	Crystal Structure Of The Maize Glutamine Synthetase		1e-142
3fky_A		370	Crystal Structure Of The Glutamine Synthetase Gln1d		1e-84
2ojw_A		384	Crystal Structure Of Human Glutamine Synthetase In		2e-80
2uu7_A		381	Crystal Structure Of Apo Glutamine Synthetase From		8e-80

>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356

Back alignment and structure

Iteration: 1

Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/291 (82%), Positives = 259/291 (89%) Query: 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75 T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQ Sbjct: 16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75 Query: 76 AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135 AIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS +V AEEPWYGIEQEYTLL Sbjct: 76 AIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLL 135 Query: 136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195 QKD WPL A+K++GRDIVD+HYKACLYAGINISGINGEVMP Sbjct: 136 QKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMP 195 Query: 196 GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 255 GQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+ Sbjct: 196 GQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTE 255 Query: 256 SMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKW 306 SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETADINTF W Sbjct: 256 SMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSW 306

PyMOL of 2d3a

>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370

Back alignment and structure

>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384

Back alignment and structure

>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		307
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	1e-175
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	1e-158
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	1e-155
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	1e-10
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	5e-10
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	6e-09
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	6e-07
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	2e-06
2bvc_A		486	Glutamine synthetase 1; ligase, transition state m	4e-06

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356	Back alignment and structure

 Score =  486 bits (1254), Expect = e-175
 Identities = 266/306 (86%), Positives = 292/306 (95%)

Query: 1   MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
           M+ L+DL+NLNLS++T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1   MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
           GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120

Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
           AEEPWYGIEQEYTLLQKD  WPLGWPIGG+PGPQGPYYCG+GA+K++GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
           YAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
           GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFKW 306
           INTF W
Sbjct: 301 INTFSW 306

PyMOL of 2d3a

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468	Back alignment and structure

>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		307
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	100.0
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	100.0
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	100.0
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	100.0
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	100.0
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	100.0
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	100.0
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	100.0
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	100.0
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	100.0
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	97.6
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	97.24

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=8.3e-79  Score=582.13  Aligned_cols=299  Identities=57%  Similarity=1.067  Sum_probs=249.5

Q ss_pred             hhhHHhhcCCCCCCCCEEEEEEEEEeCCCCcceeEEEEcCCCCCCCCCCCcccccCCccccccCCCCcEEEEeeeeeecC
Q 021842            2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP   81 (307)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~lP   81 (307)
                      .+|.+|++|  +| .+..+|+++|+|+.| ++|||+++++.+.+.+++++.|+||||++|+.+++++|++|+|||++++|
T Consensus        10 ~~~~~~~~l--~~-~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL--DQ-RGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc--cc-CCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            468899999  54 789999999999999 99999999999888888888999999999988888999999999999999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhhhcCCccEEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCccccc
Q 021842           82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV  161 (307)
Q Consensus        82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (307)
                      |.++++++|+||+++++|+|++.|||++|||++++++  |+++++|+|+|||||+.+. .+.+++.++.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9987699999999999999999999999999999887  9999999999999998763 245666555678888998776


Q ss_pred             CcchhhHHHHHHHHHHHHHHcCCeeeeecCCcCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEecccCcCC
Q 021842          162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG  241 (307)
Q Consensus       162 ~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g  241 (307)
                      +....+.++++++++++|+++||+|+++|||+|||||||++.|.++|++||+++++|++||+||++||++|||||||+.|
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            65444457999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCceeeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhHhCCCCCcCCCCCCCCCCCCCcccC
Q 021842          242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWV  307 (307)
Q Consensus       242 d~~GsG~H~H~SL~~g~n~~gls~~~~fiaGlL~h~~~~~a~~~~nsy~RL~~~~ea~~~~~~~~~  307 (307)
                      |++|||||+|+|||+.+.++|++..++||+||+.+++..+++|++||||||+|++|||.+..++||
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG  308 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSG  308 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEE
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEe
Confidence            479999999999997332456777799999999445555666679999999999999999999996

PyMOL of 3fky

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		307
d1f52a2		368	d.128.1.1 (A:101-468) Glutamine synthetase, C-term	2e-04

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
               I+          K+  G   G  PG +G Y+     D A  +DI           G
Sbjct: 47  SHVAIDDIEGAWNSSTKYEGGNK-GHRPGVKGGYFPVPPVDSA--QDIRSEMCLVMEQMG 103

Query: 184 INISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGD 242
           + +   + EV   GQ E            D++ + +Y++  +    G   +F PKP+ GD
Sbjct: 104 LVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD 163

Query: 243 WNGAGAHANYSTKSMRNDGG 262
                    +   S+  +G 
Sbjct: 164 NG----SGMHCHMSLAKNGT 179

PyMOL of d1f52a2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		307
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	100.0
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	100.0
d1f52a1		100	Glutamine synthetase, N-terminal domain {Salmonell	99.62
d2bvca1		100	Glutamine synthetase, N-terminal domain {Mycobacte	99.61
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	97.5

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.8e-53  Score=404.12  Aligned_cols=198  Identities=21%  Similarity=0.210  Sum_probs=165.8

Q ss_pred             CCCHHHHHHHHHHHhhhcCCcc--EEeeeeeEEEeccCC---------------CC-------CCCCCCCCCCCCCCCcc
Q 021842          103 PTNKRHAAAKIFSHSDVVAEEP--WYGIEQEYTLLQKDV---------------KW-------PLGWPIGGYPGPQGPYY  158 (307)
Q Consensus       103 ~~~PR~~L~~~~~~~~~~G~~~--~~g~E~EF~l~~~~~---------------~~-------~~~~~~~~~~~~~~~~~  158 (307)
                      +.|||++|||+++++++.|+.+  .+|+|+|||||+...               .+       ..+...+..+..++.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4799999999999999999965  559999999996421               00       00000111233445666


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHcCCeeeeecCCcC-CCceEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 021842          159 CGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK  237 (307)
Q Consensus       159 ~~~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK  237 (307)
                      +....+..  .+++.+|++.|+.+||+|+++|+|+| ||||||++.|.++|+|||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~~--~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDSA--QDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSCC--HHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccchH--HHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            55554443  68999999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCceeeEEEeccC-CCC---C---CCHH-HHHHHHHHHHHHHHHHHhHh--CCCCCcCCCCCCCCCCCCC
Q 021842          238 PIQGDWNGAGAHANYSTKS-MRN---D---GGFE-VIKKAIEKLGLRHSEHIAAY--GEGNERRLTGKHETADINT  303 (307)
Q Consensus       238 P~~gd~~GsG~H~H~SL~~-g~n---~---~gls-~~~~fiaGlL~h~~~~~a~~--~~nsy~RL~~~~ea~~~~~  303 (307)
                      |+. +.+|||+|+|+|||+ |+|   +   +++| .+++||||||+|++++++++  ++||||||++++|||...+
T Consensus       159 P~~-~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~  233 (368)
T d1f52a2         159 PMF-GDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA  233 (368)
T ss_dssp             SST-TSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEE
T ss_pred             cCC-CCCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHHHHhhHHHHHHHCCCchHHhhccCCCcCCceee
Confidence            999 599999999999998 555   1   2566 99999999999999999999  8999999999999996543

PyMOL of d1f52a2

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure