Citrus Sinensis ID: 021870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEEEEccccccccEEEEEEcEEEEEEEcccccEEEEEEEccccccccccEEEEEccEEEEEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEcccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEccccEEEEEEEEEcccHccEEEEEcccEEEEEEEcccccccEEEccccccccccccEEEEEccEEEEEEEccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEccHHHccccEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
MSKAYWRKATACMKLEEYETAKVALEkgaslapgdsrFTNLIKECEERIAEETgelqkqpletgptnvvstnnvqpatnisstedVETVMDVSNeaamaaparpkyrhefyqkpEEVVVTVFAkgipaknvtvdfgEQILSVsidvpgeeayhfqprlfgkiipakcryeVLSTKVEIRLAkaepiqwsslefskgavvpqrvnppsvsgsprptypsskptrvdWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVesngtvlstnwkevgskkvegsppdgmemkkwey
Flexible Loop (DISEMBL)
MSKAYWRKATACMKLEEYETAKVAlekgaslapgdsrFTNLIKECEERIAEEtgelqkqpletgptnvvstnnvqpatnisstedvETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPqrvnppsvsgsprptypsskptrvdwDKLEAQVKKeekeekldgdaalNKFFQEIYADADEDTRRAMKKsfvesngtvlstnwkevgskkvegsppdgmemkkwey
Low Complexity Region (SEG)
MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVkkeekeekLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered region (IsUnstruct)
****YWRKATACMKLEEYETAKVAL**************NLI***************************************************************YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS*****************************************************LNKFFQEIYA*************************************************
Disordered Region (DISOPRED)
*SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNN****************MDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV**************************************************KFFQEIYA*****************************************M**KKWE*
Disordered Region (DISEMBL)
MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV***********************RVDWDKLEAQV*********DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered Region (DISPRO)
MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQ*********************************************RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS*L********************************VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q9SUT5	358	Protein SGT1 homolog B OS	yes	no	0.937	0.801	0.647	1e-102
Q9SUR9	350	Protein SGT1 homolog A OS	no	no	0.908	0.794	0.629	1e-101
Q0JL44	367	Protein SGT1 homolog OS=O	yes	no	0.960	0.801	0.641	1e-100
Q9Y2Z0	365	Suppressor of G2 allele o	no	no	0.643	0.539	0.450	1e-39
Q2KIK0	338	Suppressor of G2 allele o	yes	no	0.846	0.766	0.356	2e-39
Q9CX34	336	Suppressor of G2 allele o	yes	no	0.928	0.845	0.347	7e-39
B0BN85	336	Suppressor of G2 allele o	yes	no	0.669	0.610	0.428	2e-38
Q55ED0	387	Protein SUGT1 homolog OS=	yes	no	0.627	0.496	0.427	1e-37
Q08446	395	Protein SGT1 OS=Saccharom	yes	no	0.633	0.491	0.340	3e-27
O59709	379	Glucose-insensitive trans	yes	no	0.624	0.503	0.359	2e-24

>sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/309 (64%), Positives = 234/309 (75%), Gaps = 22/309 (7%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           ++KAY RK TACMKLEEY TAK ALEKGAS+AP + +F  +I EC+ RIAEE  +L  QP
Sbjct: 69  LAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEEEKDLV-QP 127

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +     +  +T                T  D       AAPA+P +RHEFYQKPEE VVT
Sbjct: 128 MPPSLPSSSTTPLA-------------TEADAPPVPIPAAPAKPMFRHEFYQKPEEAVVT 174

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVLSTKVEIRL
Sbjct: 175 IFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRL 234

Query: 181 AKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVKKEE 237
           AKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + DWDKLEA+VKK+E
Sbjct: 235 AKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKLEAEVKKQE 289

Query: 238 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 297
           K+EKLDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+KKVE +PPD
Sbjct: 290 KDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVESTPPD 349

Query: 298 GMEMKKWEY 306
           GME+KKWEY
Sbjct: 350 GMELKKWEY 358

Involved in plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different oomycete pathogen isolates like avirulent H.parasitica (downy mildew). Contributes additively with RAR1 to RPP5-dependent resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Functions as negative regulator of RPS5 accumulation by assisting its degradation. May be involved in heat shock response by associating with HSC70-1 chaperone. Required for the SCF(TIR1)-mediated degradation of Aux/IAA proteins, but maybe not for SCF(TIR1) assembly or binding to its Aux/IAA substrates. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. Required for the coronatine/jasmonic acid-mediated signal transduction pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR9|SGT1A_ARATH Protein SGT1 homolog A OS=Arabidopsis thaliana GN=SGT1A PE=1 SV=1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/308 (62%), Positives = 232/308 (75%), Gaps = 30/308 (9%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           ++KAY RK TACMKLEEY TAK ALEKGAS+ P +S+F  LI EC   I EE  +L  QP
Sbjct: 69  LTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEEEKDLV-QP 127

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +   P+ + S+    P +           +DV+  A        KYRHE+YQKPEEVVVT
Sbjct: 128 V---PSTLPSSVTAPPVSE----------LDVTPTA--------KYRHEYYQKPEEVVVT 166

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           VFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP KC+YEVLSTK+EI L
Sbjct: 167 VFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICL 226

Query: 181 AKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVKKEE 237
           AKA+ I W+SLE  KG AV+P+    P+VS   S RP YPSSK  + DWDKLEA+VKK+E
Sbjct: 227 AKADIITWASLEHGKGPAVLPK----PNVSSEVSQRPAYPSSKKVK-DWDKLEAEVKKQE 281

Query: 238 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 297
           K+EKL+GDAALNKFF+EIY +ADED RRAM KSFVESNGTVLSTNW+EVG+K +E +PPD
Sbjct: 282 KDEKLEGDAALNKFFREIYQNADEDMRRAMSKSFVESNGTVLSTNWQEVGTKTIESTPPD 341

Query: 298 GMEMKKWE 305
           GME+KKWE
Sbjct: 342 GMELKKWE 349

Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JL44|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/307 (64%), Positives = 239/307 (77%), Gaps = 13/307 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           M KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE  E+  + 
Sbjct: 73  MHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEELSEVPVKK 132

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
            E G       + V+   + ++ ++   +++V          +PKYRH+FY    EVV+T
Sbjct: 133 AEDGAAAPSVASFVEEKDDAANMDNTPPMVEV----------KPKYRHDFYNSATEVVLT 182

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K RY+VLSTKVEIRL
Sbjct: 183 IFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEIRL 242

Query: 181 AKAEPIQWSSLEFSKG-AVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKE 239
           AKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DWDKLEA+VKKEEKE
Sbjct: 243 AKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWDKLEAEVKKEEKE 300

Query: 240 EKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGM 299
           EKL+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+VGSKKVEGSPPDGM
Sbjct: 301 EKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGM 360

Query: 300 EMKKWEY 306
           E+KKWEY
Sbjct: 361 ELKKWEY 367

Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9Y2Z0|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 132/202 (65%), Gaps = 5/202 (2%)

Query: 103 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI 162
           + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   I
Sbjct: 169 QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI 228

Query: 163 IPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPT 222
           IP +  ++VLSTK+EI+L K E ++W  LE  +G V      P       +  YPSS P 
Sbjct: 229 IPEQSTFKVLSTKIEIKLKKPEAVRWEKLE-GQGDVP----TPKQFVADVKNLYPSSSPY 283

Query: 223 RVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTN 282
             +WDKL  ++K+EEK EKL+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTN
Sbjct: 284 TRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTN 343

Query: 283 WKEVGSKKVEGSPPDGMEMKKW 304
           W +VG +KVE +PPD ME KK+
Sbjct: 344 WSDVGKRKVEINPPDDMEWKKY 365

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 156/303 (51%), Gaps = 44/303 (14%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPL 61
           S A  RK       + Y  A     +G  L   D+  T  IK C+E              
Sbjct: 80  STALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQE-------------- 125

Query: 62  ETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTV 121
                   + N  QP  + S                     + K ++++YQ   +V++T+
Sbjct: 126 --------AQNGSQPEVSASQR-----------------THQSKIKYDWYQTESQVIITL 160

Query: 122 FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLA 181
             K +   +V V+F E+ LS  + +P  + Y  + RL   IIP +  ++VLSTK+EI++ 
Sbjct: 161 MIKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMK 220

Query: 182 KAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEK 241
           K E ++W  LE  +G V     NP       +  YPSS     +WDKL  ++K+EEK EK
Sbjct: 221 KPEAVRWEKLE-GQGDVP----NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEK 275

Query: 242 LDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEM 301
           L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME 
Sbjct: 276 LEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEW 335

Query: 302 KKW 304
           KK+
Sbjct: 336 KKY 338

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Bos taurus (taxid: 9913)

>sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 173/311 (55%), Gaps = 27/311 (8%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE--CEERIAEETGELQK- 58
           ++ Y ++A   + L +Y      ++K   L P +   T L+++  CE    +    L+  
Sbjct: 45  AQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNC--TALLRKGICEYHEKDYASALETF 102

Query: 59  ---QPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPAR--PKYRHEFYQK 113
              Q L++  TN          T I   ++++      +E+ ++A  R   K ++++YQ 
Sbjct: 103 AEGQKLDSTDTNF--------DTWIKRCQEIQN----GSESEVSASQRTQSKIKYDWYQT 150

Query: 114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS 173
              V++T+  K +   +V V F E+ LS  + +P  E Y  + RL   IIP +  ++VLS
Sbjct: 151 ESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLS 210

Query: 174 TKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV 233
           TK+EI++ K E ++W  LE       P++      +   +  YPSS     +WDKL  ++
Sbjct: 211 TKIEIKMKKPEAVRWEKLEGQGDEPTPKQF-----TADVKNMYPSSSHYTRNWDKLVGEI 265

Query: 234 KKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEG 293
           K+EEK EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE 
Sbjct: 266 KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEI 325

Query: 294 SPPDGMEMKKW 304
           +PPD ME K++
Sbjct: 326 NPPDDMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 133/210 (63%), Gaps = 5/210 (2%)

Query: 95  EAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 154
           E + +   + K ++++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    
Sbjct: 132 EVSASQRTQSKIKYDWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSL 191

Query: 155 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRP 214
           + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V      P   +   + 
Sbjct: 192 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDVPA----PKQFTADVKN 246

Query: 215 TYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVES 274
            YPSS     +WDKL  ++K+EEK EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES
Sbjct: 247 MYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMES 306

Query: 275 NGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304
            GTVLSTNW +VG +KVE +PPD ME K++
Sbjct: 307 GGTVLSTNWSDVGKRKVEINPPDDMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 9/201 (4%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           K RHE+YQ    VV+T+FAK + A N  ++   + +++S  +     + F+  LF  I+ 
Sbjct: 195 KVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEMDLFDPIVD 254

Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 224
                   STKVEI++ K+  I+W +LEF+  +     ++  S S    P  PS   ++ 
Sbjct: 255 KDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLMDQISSS----PAVPSPYASKK 310

Query: 225 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 284
           DWDKL       E EEKL+GD ALNK F++I++   ED +RAM KSF ES GTVLSTNW 
Sbjct: 311 DWDKLP-----NEPEEKLEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESGGTVLSTNWD 365

Query: 285 EVGSKKVEGSPPDGMEMKKWE 305
           EVGSKKV G PP G+E K++E
Sbjct: 366 EVGSKKVVGEPPKGLEFKQYE 386

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08446|SGT1_YEAST Protein SGT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT1 PE=1 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 26/220 (11%)

Query: 104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDF-----GEQILSVSIDVP--GEEAYHFQP 156
           PK++ ++YQ    V +++F   +P     V+        + LS+S  VP  G E + +  
Sbjct: 183 PKFKIDWYQSSTSVTISLFTVNLPESKEQVNIYISPNDRRTLSISYQVPKSGSE-FQYNA 241

Query: 157 RLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS------------KGAVVPQRVN 204
           +L  ++ P     ++   K+EI L+K +  QW  LE              K +    R+ 
Sbjct: 242 KLSHEVDPKAVSLKIFPKKLEITLSKIDSTQWKKLEEDILTESSRLSDEGKNSDSATRLL 301

Query: 205 PPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTR 264
               +   R +YPSS   ++DW KL+  + +E  EE    D+    FFQ++YA AD DT+
Sbjct: 302 SAETASKERLSYPSSSKKKIDWSKLD--IDEEADEEAGSADS----FFQKLYAGADPDTK 355

Query: 265 RAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304
           RAM KSF+ESNGT LST+W++V    V+ SPP+GME K W
Sbjct: 356 RAMMKSFIESNGTALSTDWEDVSKGTVKTSPPEGMEPKHW 395

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Required for both entry into S phase and kinetochore function. Also involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59709|GIT7_SCHPO Glucose-insensitive transcription protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=git7 PE=4 SV=2

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 15/206 (7%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKII 163
           + R+++ Q    + + ++AK +  ++V++   +  L + I +     +      L+ +I+
Sbjct: 183 RIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIV 242

Query: 164 PAKCRYEVLSTKVEIRLAK-AEPIQWSSLEFSKGA----VVPQRVNPPSVSGSPRPTYPS 218
           P K  +++ S+KVEI L K    I+W +L  S       V  +  N  S SG+       
Sbjct: 243 PEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGN------- 295

Query: 219 SKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTV 278
           +K    DWD L      EE E    G+AAL   FQ +Y +AD+DTRRAM KS+ ESNGT 
Sbjct: 296 TKNKAKDWDSLAKLADLEEDEPT--GEAALANLFQNLYKNADDDTRRAMMKSYTESNGTA 353

Query: 279 LSTNWKEVGSKKVEGSPPDGMEMKKW 304
           LSTNWK+V SK  E  PP GME KK+
Sbjct: 354 LSTNWKDVKSKTFETKPPQGMEPKKF 379

Involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
6468695	327	putative protein phosphatase [Rubus idae	0.947	0.886	0.747	1e-123
390985902	361	SGT1 [Vitis pseudoreticulata]	0.957	0.811	0.741	1e-122
225464635	361	PREDICTED: protein SGT1 homolog [Vitis v	0.957	0.811	0.735	1e-120
51511450	370	SGT1 [Solanum tuberosum]	0.980	0.810	0.699	1e-119
62467587	370	Sgt1b [Capsicum annuum]	0.980	0.810	0.705	1e-118
255545142	361	chaperone binding protein, putative [Ric	0.957	0.811	0.725	1e-118
388509998	358	unknown [Lotus japonicus]	0.947	0.810	0.699	1e-118
356559728	359	PREDICTED: protein SGT1 homolog B-like [	0.950	0.810	0.699	1e-117
238915472	360	SGT1 [Malus hupehensis]	0.954	0.811	0.728	1e-114
351725565	359	SGT1-2 [Glycine max] gi|208964720|gb|ACI	0.944	0.805	0.688	1e-114

>gi|6468695|emb|CAB61630.1| putative protein phosphatase [Rubus idaeus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/305 (74%), Positives = 248/305 (81%), Gaps = 15/305 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           + KAY RK  ACMKLEEY TAK ALE GASLAPG+SRF  +IKEC+E IAEE GE  KQP
Sbjct: 37  LFKAYLRKGIACMKLEEYRTAKAALELGASLAPGESRFAKMIKECDELIAEENGEPPKQP 96

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +ET  T +V+             EDVE V   SNE  +A P +PKYRHEFYQK EEVVVT
Sbjct: 97  METTTTEIVA-------------EDVEPVDPPSNEVTVA-PVKPKYRHEFYQKAEEVVVT 142

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKGIPA+NV VDFG QILSVSIDVPGE   HFQPRLFGKIIP KCR+EVLSTKVEIRL
Sbjct: 143 IFAKGIPAENVAVDFGPQILSVSIDVPGEVHIHFQPRLFGKIIPEKCRFEVLSTKVEIRL 202

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAEP  W+SLEFSK   VP +VN P V G+ RP+YPSSKP RVDWDKLEAQVKKEEK+E
Sbjct: 203 AKAEPNHWTSLEFSKDNPVPLKVNAP-VIGAQRPSYPSSKPKRVDWDKLEAQVKKEEKDE 261

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFFQ+IY DADEDTRRAM+KSFVESNGTVLSTNWKEVG+KKVEGS PDGME
Sbjct: 262 KLDGDAALNKFFQDIYKDADEDTRRAMRKSFVESNGTVLSTNWKEVGNKKVEGSAPDGME 321

Query: 301 MKKWE 305
           MKKWE
Sbjct: 322 MKKWE 326

Source: Rubus idaeus

Species: Rubus idaeus

Genus: Rubus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390985902|gb|AFM35697.1| SGT1 [Vitis pseudoreticulata]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/306 (74%), Positives = 247/306 (80%), Gaps = 13/306 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           MSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEERIAEET  L KQ 
Sbjct: 69  MSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEERIAEETDGLPKQS 128

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +   P  V S   V  A  +             ++  M   ++PKYRHE+YQKP+EVVVT
Sbjct: 129 VVQAPEAVESPETVVAAEKV-------------HQVPMVTASKPKYRHEYYQKPQEVVVT 175

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKGIP +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVLSTK+EIRL
Sbjct: 176 IFAKGIPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRL 235

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQVKKEEKEE
Sbjct: 236 AKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEE 295

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVEGSPPDGME
Sbjct: 296 KLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 355

Query: 301 MKKWEY 306
           MKKWEY
Sbjct: 356 MKKWEY 361

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464635|ref|XP_002276170.1| PREDICTED: protein SGT1 homolog [Vitis vinifera] gi|302143763|emb|CBI22624.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/306 (73%), Positives = 246/306 (80%), Gaps = 13/306 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           MSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEE IAEET  L KQ 
Sbjct: 69  MSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEECIAEETDGLPKQS 128

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +   P  V S   V  A  +             ++  M   ++PKYRHE+YQKP+EVVVT
Sbjct: 129 VVPAPEAVESPETVVAAEEV-------------HQVPMVTASKPKYRHEYYQKPQEVVVT 175

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKG+P +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVLSTK+EIRL
Sbjct: 176 IFAKGVPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRL 235

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQVKKEEKEE
Sbjct: 236 AKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEE 295

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVEGSPPDGME
Sbjct: 296 KLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 355

Query: 301 MKKWEY 306
           MKKWEY
Sbjct: 356 MKKWEY 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51511450|gb|AAU04979.1| SGT1 [Solanum tuberosum]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 249/306 (81%), Gaps = 6/306 (1%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           MSKAY R+  ACMKLEEY+TAK ALE GASLAPG+ RFT LIKEC+ERIAEE GEL    
Sbjct: 69  MSKAYLRRGLACMKLEEYQTAKTALETGASLAPGELRFTKLIKECDERIAEEAGELPNLS 128

Query: 61  LETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVV 119
           ++    +VV+    + + N++ + ED +  +   N++   + A+PKYRHEFYQKPEEVVV
Sbjct: 129 VDKTSASVVAPPASELSDNVAIAPEDAQPTV---NQSHQGSAAKPKYRHEFYQKPEEVVV 185

Query: 120 TVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR 179
           T+FAKGIPAKNV +DFGEQILSVSIDVPGEE Y FQPRLFGKI PAKCRY+V+STK+EIR
Sbjct: 186 TIFAKGIPAKNVVIDFGEQILSVSIDVPGEETYSFQPRLFGKITPAKCRYDVMSTKIEIR 245

Query: 180 LAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKE 239
           LAKAE + W+SLE++   VV QR  P   S +PRP+YPSSK   VDWDKLEA VKKEEK+
Sbjct: 246 LAKAELLHWTSLEYTTEPVVVQR--PIVSSAAPRPSYPSSKLRNVDWDKLEAAVKKEEKD 303

Query: 240 EKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGM 299
           EKLDGDAALNKFF++IY DADEDTRRAM KSFV SNGTVLSTNWKEVG+KKVEGSPPDGM
Sbjct: 304 EKLDGDAALNKFFRDIYQDADEDTRRAMMKSFVGSNGTVLSTNWKEVGTKKVEGSPPDGM 363

Query: 300 EMKKWE 305
           E+KKWE
Sbjct: 364 ELKKWE 369

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62467587|gb|AAX83943.1| Sgt1b [Capsicum annuum]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 253/306 (82%), Gaps = 6/306 (1%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           MSKAY RK  ACMKLEEY+TAK ALE GASLAPG+SRFT L+KEC+E IAEE GEL    
Sbjct: 69  MSKAYLRKGLACMKLEEYQTAKAALETGASLAPGESRFTKLMKECDESIAEEAGELPNIS 128

Query: 61  LETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVV 119
           LE    N V+++  + + N++ +  D ++ + +S++ + A   +PKYRHEFYQKPEEVVV
Sbjct: 129 LEKPSANAVASSASELSDNVAIAPRDPQSTVTLSHQESAA---KPKYRHEFYQKPEEVVV 185

Query: 120 TVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR 179
           T+FAKGIPAKNV VDFGEQILSVSID+PG E Y FQPRLFGKI PAKCRYEV+STK+EIR
Sbjct: 186 TIFAKGIPAKNVVVDFGEQILSVSIDLPGGETYSFQPRLFGKITPAKCRYEVMSTKIEIR 245

Query: 180 LAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKE 239
           LAKAEP+ W+SL++++  VV  R  P   S +PRP+YPSSK   VDWDKLEAQVKKEEK+
Sbjct: 246 LAKAEPLHWTSLDYTREPVVIHR--PVVSSAAPRPSYPSSKLRNVDWDKLEAQVKKEEKD 303

Query: 240 EKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGM 299
           EKLDGDAALNKFF++IY DADEDTRRAM KSFVESNGTVLSTNWKEVG+KKVEGSPPDGM
Sbjct: 304 EKLDGDAALNKFFRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKVEGSPPDGM 363

Query: 300 EMKKWE 305
           E+KKWE
Sbjct: 364 ELKKWE 369

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545142|ref|XP_002513632.1| chaperone binding protein, putative [Ricinus communis] gi|223547540|gb|EEF49035.1| chaperone binding protein, putative [Ricinus communis]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/306 (72%), Positives = 249/306 (81%), Gaps = 13/306 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           M+KAY RK TAC++LEEY+TAK ALE GASLAP D RFTNLIKECEE IA+ET  L K  
Sbjct: 69  MAKAYLRKGTACIRLEEYQTAKAALEIGASLAPEDPRFTNLIKECEECIADETDNLPKHA 128

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
            E  P NVV   +VQP            V D  ++  +  P++PKYRHEFYQKPEEVVVT
Sbjct: 129 SE-APENVVPMEDVQP------------VNDHISKVPIVTPSKPKYRHEFYQKPEEVVVT 175

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKG+PA +V VDFGEQILSVSI+VPGE+AYHFQPRLFGKIIPAKCRY VLSTKVE+ L
Sbjct: 176 IFAKGLPASSVAVDFGEQILSVSINVPGEDAYHFQPRLFGKIIPAKCRYNVLSTKVEVHL 235

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
            KA+PI W+SLEFS    V QR N  S +GS RP+YPSSKP R DWD+LEA+VKKEEK+E
Sbjct: 236 VKADPIHWTSLEFSNEITVLQRANVSSGTGSHRPSYPSSKPKRTDWDRLEAEVKKEEKDE 295

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF++IY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME
Sbjct: 296 KLDGDAALNKFFRDIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 355

Query: 301 MKKWEY 306
           M+KWEY
Sbjct: 356 MRKWEY 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509998|gb|AFK43065.1| unknown [Lotus japonicus]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 246/306 (80%), Gaps = 16/306 (5%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           +SKAY RK TACMKLEEY+TAK ALE GA+L+   SRF NLIKEC++ IAEE+  +  Q 
Sbjct: 69  LSKAYLRKGTACMKLEEYQTAKTALEMGATLSTDKSRFLNLIKECDKLIAEESYPMPIQ- 127

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
            E   T  VS  +VQP  +++             E  + A A+PKYRHEFYQKP+EVVVT
Sbjct: 128 -EKATTLDVSPKDVQPDKDLT-------------EQPIVAVAKPKYRHEFYQKPDEVVVT 173

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKG   +N+TVDFGEQILSVSI+VPGE+AY FQPRLFGKII ++CRYEVLSTK+EIRL
Sbjct: 174 IFAKGASKENITVDFGEQILSVSINVPGEDAYTFQPRLFGKIISSRCRYEVLSTKIEIRL 233

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
            KAEPI W+SLEF++   V QR N  SV GS RPTYPSSKP + DWDKLEAQVKKEEK+E
Sbjct: 234 GKAEPIHWNSLEFTREVAVAQRANISSVIGSQRPTYPSSKPKK-DWDKLEAQVKKEEKDE 292

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KKVEGSPPDGME
Sbjct: 293 KLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGME 352

Query: 301 MKKWEY 306
           ++KWEY
Sbjct: 353 LRKWEY 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559728|ref|XP_003548149.1| PREDICTED: protein SGT1 homolog B-like [Glycine max]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 248/306 (81%), Gaps = 15/306 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           + KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE+  +   P
Sbjct: 69  LPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEESYTI---P 125

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +    T   +T +  P       +DV+   D+  E    A  +PKYRHEFYQKP+++VVT
Sbjct: 126 IIEEKT---TTQDATP-------KDVQQQDDLL-EKPTVAVTKPKYRHEFYQKPDQLVVT 174

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAK IP +++TVDFGEQILSVSI+VPGE+ Y FQPRLFGKI+P+ CRYEVLSTK+EIRL
Sbjct: 175 IFAKKIPKESITVDFGEQILSVSINVPGEDVYAFQPRLFGKIVPSNCRYEVLSTKIEIRL 234

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAEPI W+SLEF+   VVPQRVN  SV+GS RP+YPSSK TR DWDK+EAQVKKEEK+E
Sbjct: 235 AKAEPIHWTSLEFTTDIVVPQRVNASSVTGSQRPSYPSSKQTR-DWDKIEAQVKKEEKDE 293

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGS PDGME
Sbjct: 294 KLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSAPDGME 353

Query: 301 MKKWEY 306
           +KKWEY
Sbjct: 354 LKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238915472|gb|ACR78249.1| SGT1 [Malus hupehensis]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/306 (72%), Positives = 254/306 (83%), Gaps = 14/306 (4%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           + KAY+RK  AC+KLEEY+TAK ALE GA LAP ++RF +LIKEC+E+IAEET  L   P
Sbjct: 69  LYKAYFRKGIACIKLEEYQTAKAALETGAPLAPQETRFASLIKECDEKIAEETIVLPTPP 128

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
           +E        T NV PA      +DVE V + SN+  +A   +PKYRHEFYQKPEEVVVT
Sbjct: 129 VEKD-----ITENVIPA------KDVEPVSEPSNQVTVAT-VKPKYRHEFYQKPEEVVVT 176

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           +FAKGIPAK+V VDFGEQILSVSIDV GE+ +HFQPRLFGKIIP KCR++VLSTKVEIRL
Sbjct: 177 IFAKGIPAKDVHVDFGEQILSVSIDVAGEDTFHFQPRLFGKIIPEKCRFDVLSTKVEIRL 236

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAEPIQW+SLEFSK ++VP R + P V G+PRP+YPSSKP R DWDKLEAQVKKEEKEE
Sbjct: 237 AKAEPIQWASLEFSKDSLVPFRGSGP-VVGAPRPSYPSSKPKR-DWDKLEAQVKKEEKEE 294

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFFQ+IY DADEDTRRAM+KSFVESNGTVLSTN KEVG+KKVEGS PDGME
Sbjct: 295 KLDGDAALNKFFQDIYKDADEDTRRAMRKSFVESNGTVLSTNXKEVGNKKVEGSAPDGME 354

Query: 301 MKKWEY 306
           MKKWE+
Sbjct: 355 MKKWEF 360

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725565|ref|NP_001236585.1| SGT1-2 [Glycine max] gi|208964720|gb|ACI31550.1| SGT1-2 [Glycine max]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/308 (68%), Positives = 245/308 (79%), Gaps = 19/308 (6%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           + KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE+       
Sbjct: 69  LPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEESY------ 122

Query: 61  LETGPT--NVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVV 118
             T P      +T +V P       +DV+   D+  E       +PKYRHEFYQK ++VV
Sbjct: 123 --TPPIIEEKATTEDVTP-------KDVQQQDDLL-EKPTVTVTKPKYRHEFYQKHDQVV 172

Query: 119 VTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI 178
           VT+FAK IP +++TVDFGEQILSVSI+V GE+ Y FQPRLFGKIIP+ C+YEVLSTK+EI
Sbjct: 173 VTIFAKKIPKESITVDFGEQILSVSINVTGEDTYVFQPRLFGKIIPSNCQYEVLSTKIEI 232

Query: 179 RLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEK 238
           RLAKAEPI W+SLEF++  VV QRVN  SV+GS RP+YPSSK TR DWDK+EAQVKKEEK
Sbjct: 233 RLAKAEPIHWTSLEFTRDIVVQQRVNASSVTGSQRPSYPSSKQTR-DWDKIEAQVKKEEK 291

Query: 239 EEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDG 298
           +EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KKVEGSPPDG
Sbjct: 292 DEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDG 351

Query: 299 MEMKKWEY 306
           ME+KKWEY
Sbjct: 352 MELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
UNIPROTKB|Q0JL44	367	SGT1 "Protein SGT1 homolog" [O	0.957	0.798	0.623	9.7e-96
TAIR|locus:2128278	358	SGT1B [Arabidopsis thaliana (t	0.937	0.801	0.640	9.7e-96
UNIPROTKB|Q9Y2Z0	365	SUGT1 "Suppressor of G2 allele	0.637	0.534	0.43	5.2e-43
RGD|1307550	336	Sugt1 "SGT1, suppressor of G2	0.669	0.610	0.404	1.1e-42
DICTYBASE|DDB_G0269292	387	sugt1 "SGS domain-contantaing	0.957	0.757	0.351	7.5e-41
UNIPROTKB|Q2KIK0	338	SUGT1 "Suppressor of G2 allele	0.924	0.837	0.355	1.2e-40
MGI|MGI:1915205	336	Sugt1 "SGT1, suppressor of G2	0.941	0.857	0.328	8.7e-40
ZFIN|ZDB-GENE-041114-56	322	sgut1 "SGT1, suppressor of G2	0.705	0.670	0.400	1.6e-38
CGD|CAL0004941	413	SGT1 [Candida albicans (taxid:	0.745	0.552	0.351	1.1e-34
UNIPROTKB|Q59X42	413	CaO19.11570 "Putative uncharac	0.745	0.552	0.351	1.1e-34

UNIPROTKB|Q0JL44 SGT1 "Protein SGT1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 192/308 (62%), Positives = 231/308 (75%)

Query:     1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
             M KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE  E+  + 
Sbjct:    73 MHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEELSEVPVKK 132

Query:    61 LETGPTNVVSTNNVQPATNISS-TEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVV 119
              E G            A +++S  E+ +   ++ N   M    +PKYRH+FY    EVV+
Sbjct:   133 AEDGAA----------APSVASFVEEKDDAANMDNTPPMVE-VKPKYRHDFYNSATEVVL 181

Query:   120 TVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR 179
             T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K RY+VLSTKVEIR
Sbjct:   182 TIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEIR 241

Query:   180 LAKAEPIQWSSLEFSKGA-VVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXX 238
             LAKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DWDKLEA+V     
Sbjct:   242 LAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWDKLEAEVKKEEK 299

Query:   239 XXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDG 298
                L+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+VGSKKVEGSPPDG
Sbjct:   300 EEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDG 359

Query:   299 MEMKKWEY 306
             ME+KKWEY
Sbjct:   360 MELKKWEY 367

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2128278 SGT1B [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 198/309 (64%), Positives = 231/309 (74%)

Query:     1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
             ++KAY RK TACMKLEEY TAK ALEKGAS+AP + +F  +I EC+ RIAEE  +L  QP
Sbjct:    69 LAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEEEKDLV-QP 127

Query:    61 LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
             +   P ++ S          SST  + T  D       AAPA+P +RHEFYQKPEE VVT
Sbjct:   128 M---PPSLPS----------SSTTPLATEADAPPVPIPAAPAKPMFRHEFYQKPEEAVVT 174

Query:   121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
             +FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVLSTKVEIRL
Sbjct:   175 IFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRL 234

Query:   181 AKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVXXXX 237
             AKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + DWDKLEA+V    
Sbjct:   235 AKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKLEAEVKKQE 289

Query:   238 XXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 297
                 LDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+KKVE +PPD
Sbjct:   290 KDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVESTPPD 349

Query:   298 GMEMKKWEY 306
             GME+KKWEY
Sbjct:   350 GMELKKWEY 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:2000072 "regulation of defense response to fungus, incompatible interaction" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=TAS

GO:0030163 "protein catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q9Y2Z0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Homo sapiens (taxid:9606)]

 Score = 431 (156.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 86/200 (43%), Positives = 125/200 (62%)

Query:   105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
             K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct:   171 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 230

Query:   165 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 224
              +  ++VLSTK+EI+L K E ++W  LE  +G V P    P       +  YPSS P   
Sbjct:   231 EQSTFKVLSTKIEIKLKKPEAVRWEKLE-GQGDV-P---TPKQFVADVKNLYPSSSPYTR 285

Query:   225 DWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 284
             +WDKL  ++        L+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW 
Sbjct:   286 NWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWS 345

Query:   285 EVGSKKVEGSPPDGMEMKKW 304
             +VG +KVE +PPD ME KK+
Sbjct:   346 DVGKRKVEINPPDDMEWKKY 365

GO:0005634 "nucleus" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

RGD|1307550 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 420 (152.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 85/210 (40%), Positives = 127/210 (60%)

Query:    95 EAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 154
             E + +   + K ++++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    
Sbjct:   132 EVSASQRTQSKIKYDWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSL 191

Query:   155 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRP 214
             + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V P    P   +   + 
Sbjct:   192 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-PA---PKQFTADVKN 246

Query:   215 TYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVES 274
              YPSS     +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES
Sbjct:   247 MYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMES 306

Query:   275 NGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304
              GTVLSTNW +VG +KVE +PPD ME K++
Sbjct:   307 GGTVLSTNWSDVGKRKVEINPPDDMEWKQY 336

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0269292 sugt1 "SGS domain-contantaing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 116/330 (35%), Positives = 167/330 (50%)

Query:     2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE--------- 52
             SK Y +K   C +LEE++TA    EKG S+   +S F   I++ +  I            
Sbjct:    68 SKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSFKTWIRKSKAEIQSNPTTTTTTTP 127

Query:    53 ----TGELQKQPLET--GPTNVVSTNNVQPATNISSTEDVE---------TVMDVSNEAA 97
                 T     QP+ T   PT + +T+N    TN ++  +           T  D S    
Sbjct:   128 TPTPTPTPAPQPVTTTTNPTPIPTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTD-STTTK 186

Query:    98 MAAPARP-KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP 156
             +  P+   K RHE+YQ    VV+T+FAK + A N  ++   + +++S  +     + F+ 
Sbjct:   187 LPIPSSGNKVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEM 246

Query:   157 RLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS-KGAVVPQRVNPPSVSGSPRPT 215
              LF  I+         STKVEI++ K+  I+W +LEF+ K   V        +S SP   
Sbjct:   247 DLFDPIVDKDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLM---DQISSSP--A 301

Query:   216 YPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESN 275
              PS   ++ DWDKL  +         L+GD ALNK F++I++   ED +RAM KSF ES 
Sbjct:   302 VPSPYASKKDWDKLPNEPEEK-----LEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESG 356

Query:   276 GTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 305
             GTVLSTNW EVGSKKV G PP G+E K++E
Sbjct:   357 GTVLSTNWDEVGSKKVVGEPPKGLEFKQYE 386

GO:0003674 "molecular_function" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q2KIK0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Bos taurus (taxid:9913)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 109/307 (35%), Positives = 162/307 (52%)

Query:     5 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE--CEERIAEETGELQK---- 58
             Y ++A   + L  Y  A    +K   L P  S  T L+++  CE         L+     
Sbjct:    49 YCQRAYCHILLGNYSDAVADAKKSLELNPNSS--TALLRKGICEYHEKNYAAALETFTEG 106

Query:    59 QPLETGPTNVVS-TNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEV 117
             Q L +   ++ +     Q A N S  E       VS   A     + K ++++YQ   +V
Sbjct:   107 QKLNSADADLTAWIKRCQEAQNGSQPE-------VS---ASQRTHQSKIKYDWYQTESQV 156

Query:   118 VVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 177
             ++T+  K +   +V V+F E+ LS  + +P  + Y  + RL   IIP +  ++VLSTK+E
Sbjct:   157 IITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIE 216

Query:   178 IRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXX 237
             I++ K E ++W  LE  +G V P   NP       +  YPSS     +WDKL  ++    
Sbjct:   217 IKMKKPEAVRWEKLE-GQGDV-P---NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEE 271

Query:   238 XXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 297
                 L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD
Sbjct:   272 KNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPD 331

Query:   298 GMEMKKW 304
              ME KK+
Sbjct:   332 DMEWKKY 338

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1915205 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 99/301 (32%), Positives = 161/301 (53%)

Query:     5 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLET- 63
             Y ++A   + L +Y      ++K   L P +   T L+++    I E   +     LET 
Sbjct:    48 YCQRAYCHILLGKYRDGIADVKKSLELNPNNC--TALLRK---GICEYHEKDYASALETF 102

Query:    64 GPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFA 123
                  + + +    T I   ++++   +  +E + +   + K ++++YQ    V++T+  
Sbjct:   103 AEGQKLDSTDTNFDTWIKRCQEIQNGSE--SEVSASQRTQSKIKYDWYQTESHVIITLMI 160

Query:   124 KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 183
             K +   +V V F E+ LS  + +P  E Y  + RL   IIP +  ++VLSTK+EI++ K 
Sbjct:   161 KSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMKKP 220

Query:   184 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 243
             E ++W  LE  +G        P   +   +  YPSS     +WDKL  ++        L+
Sbjct:   221 EAVRWEKLE-GQG----DEPTPKQFTADVKNMYPSSSHYTRNWDKLVGEIKEEEKNEKLE 275

Query:   244 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 303
             GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME K+
Sbjct:   276 GDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKQ 335

Query:   304 W 304
             +
Sbjct:   336 Y 336

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-041114-56 sgut1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 93/232 (40%), Positives = 129/232 (55%)

Query:    81 SSTEDVETVMD-VSNEAAMAAPARPK-------YRHEFYQKPEEVVVTVFAKGIPAKNVT 132
             SS E+ +T M     E A   P +          +H++YQ   +V VT+  K    + V 
Sbjct:    99 SSVEEFQTWMQHCETEMATHIPNKTSDLQTTTHVKHDWYQTESQVAVTIMVKNAKKEGVI 158

Query:   133 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
             V FGE+ L+  + +P  E Y  +  L   I+P +  Y++LSTK+EI++ K E IQW  L+
Sbjct:   159 VSFGERELTAVVKLPSGEDYCLKVHLLHPIVPQQSTYKILSTKIEIKMKKTEAIQWEKLQ 218

Query:   193 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFF 252
                G      V   + S      YPSS     +WDKL  ++        L+GDAALNK F
Sbjct:   219 ---GEETLSNVKHFTAS-----QYPSSSHYTRNWDKLVGEIKEEEKKENLEGDAALNKLF 270

Query:   253 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304
             Q+IY+D  +D RRAM KSF+ES GTVLSTNW +VG +KVE +PPD +E KK+
Sbjct:   271 QQIYSDGSDDVRRAMNKSFMESGGTVLSTNWIDVGKRKVEMNPPDDVEWKKY 322

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004941 SGT1 [Candida albicans (taxid:5476)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:    66 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 125
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   126 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 183
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   184 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 243
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   244 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 303
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   304 WE 305
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0051382 "kinetochore assembly" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

UNIPROTKB|Q59X42 CaO19.11570 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:    66 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 125
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   126 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 183
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   184 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 243
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   244 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 303
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   304 WE 305
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JL44	SGT1_ORYSJ	No assigned EC number	0.6416	0.9607	0.8010	yes	no
Q9CX34	SUGT1_MOUSE	No assigned EC number	0.3472	0.9281	0.8452	yes	no
Q9SUT5	SGT1B_ARATH	No assigned EC number	0.6472	0.9379	0.8016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037765001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (361 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038500001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (178 aa)					•	•	•		0.947
	GSVIVG00021159001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (792 aa)					•	•			0.810
	GSVIVG00002550001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (508 aa)					•	•			0.808
	GSVIVG00014401001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (806 aa)					•	•			0.803
	GSVIVG00033437001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (207 aa)						•			0.800
	GSVIVG00029085001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (914 aa)						•			0.800
	GSVIVG00016524001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (903 aa)						•			0.800
	GSVIVG00019623001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (914 aa)					•		•	•	0.409

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-176
pfam05002	78	pfam05002, SGS, SGS domain	3e-34
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	1e-32
COG5091	368	COG5091, SGT1, Suppressor of G2 allele of skp1 and	9e-32
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	1e-21
pfam04969	78	pfam04969, CS, CS domain	9e-21
cd06489	84	cd06489, p23_CS_hSgt1_like, p23_like domain simila	9e-19
cd06488	87	cd06488, p23_melusin_like, p23_like domain similar	1e-14
cd06468	92	cd06468, p23_CacyBP, p23_like domain found in prot	4e-10
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	7e-09
cd06490	87	cd06490, p23_NCB5OR, p23_like domain found in NAD(	0.001
pfam08959	288	pfam08959, DUF1872, Domain of unknown function (DU	0.003

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  490 bits (1264), Expect = e-176
 Identities = 212/306 (69%), Positives = 240/306 (78%), Gaps = 18/306 (5%)

Query: 1   MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQP 60
           ++KAY RK TACMKLEEY+TAK ALEKGASLAPGDSRFT LIKEC+E+IAEE  +L +  
Sbjct: 69  LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPV 128

Query: 61  LETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVT 120
               P                S+     V +      +  P++PKYRHEFYQKPEEVVVT
Sbjct: 129 PSDLP----------------SSVTAPPVEEADA-TPVVPPSKPKYRHEFYQKPEEVVVT 171

Query: 121 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 180
           VFAKG+PA+NV VDFGEQILSV I+VPGE+AYH QPRLFGKIIP KC+YEVLSTK+EIRL
Sbjct: 172 VFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRL 231

Query: 181 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240
           AKAEPI W+SLE+ KG  V  + N  S   S RP YPSSK  + DWDKLEA+VKKEEK+E
Sbjct: 232 AKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDE 290

Query: 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 300
           KLDGDAALNKFF+EIY +ADEDTRRAM KSFVESNGTVLSTNWKEVGSKK+EGSPPDGME
Sbjct: 291 KLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGME 350

Query: 301 MKKWEY 306
           +KKWEY
Sbjct: 351 LKKWEY 356

Length = 356

>gnl|CDD|218373 pfam05002, SGS, SGS domain

 Score =  119 bits (300), Expect = 3e-34
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 224 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 283
            DWDKL     KE+++++ D  AALN FF+++Y D D+DT+RAM KSF ESNGTVLSTNW
Sbjct: 2   KDWDKL----TKEDEDDEEDPSAALNNFFKKLYKDGDDDTKRAMMKSFTESNGTVLSTNW 57

Query: 284 KEVGSKKVEGSPPDGMEMKKW 304
            EVG KKVE  PP+GME KKW
Sbjct: 58  DEVGKKKVETKPPEGMEAKKW 78

This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Length = 78

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score =  115 bits (290), Expect = 1e-32
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 168
           ++YQ    V VT++AK +  ++V V+F EQ LSVSI +PG   Y  +  LFG I P + +
Sbjct: 1   DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSK 60

Query: 169 YEVLSTKVEIRLAKAEPIQWSSLE 192
             VL TKVEI L KAEP  W SLE
Sbjct: 61  VSVLPTKVEITLKKAEPGSWPSLE 84

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

 Score =  120 bits (303), Expect = 9e-32
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 13/240 (5%)

Query: 70  STNNVQPATNISSTEDVETVMD-VSNEAAMAAPA-RPKYRHEFYQKPEEVVVTVFAKGIP 127
           + + ++P  +I +  D  +    +S      AP   PK    +          +F    P
Sbjct: 137 NKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPP 196

Query: 128 AKNVTVD--FGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE 184
             +  V        LS+S               L+ ++ P     +  S +VE+ L K E
Sbjct: 197 VGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256

Query: 185 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDG 244
            ++W  L    G    +         +     P S   + DW +L     ++  +E  + 
Sbjct: 257 MVRWGGLN---GRPADESSRLSDEGKNSDSATPKSSKKQDDWKELM---VEDSGDE--EN 308

Query: 245 DAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304
            + ++  FQ++Y  AD+DTRRAM KSF ESNGT LST+W +V SK +   PP+GME K W
Sbjct: 309 PSVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368

Length = 368

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRY 169
           +YQ  +EV +T+  K +  K+V V+F  + L+VS+   G + Y  +  LFG I P + ++
Sbjct: 1   WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60

Query: 170 EVLSTKVEIRLAKAEPIQ-WSSLE 192
            V   K+EI L K EP + W  LE
Sbjct: 61  TVEDRKIEITLKKKEPGEWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 84.2 bits (209), Expect = 9e-21
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 107 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 165
           R+++YQ  +EV +T+  KG    K+V V+   + L VSI  PG + Y     LFG I P 
Sbjct: 2   RYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPE 61

Query: 166 KCRYEVLSTKVEIRLAK 182
           +  +++  TKVEI L K
Sbjct: 62  ESSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

 Score = 79.0 bits (195), Expect = 9e-19
 Identities = 31/84 (36%), Positives = 54/84 (64%)

Query: 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 168
           ++YQ   +VV+T+  K +  ++V+V+F ++ LS ++ +P    Y  +  L   I+P +  
Sbjct: 1   DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSS 60

Query: 169 YEVLSTKVEIRLAKAEPIQWSSLE 192
           Y++LSTK+EI+L K E I+WS LE
Sbjct: 61  YKILSTKIEIKLKKTEAIRWSKLE 84

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup. Length = 84

>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 107 RHEFYQKPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 165
           RH+++Q    VVV+V+AK   P  +V V+    +L++ I   G + +     L+G I   
Sbjct: 2   RHDWHQTGSHVVVSVYAKNSNPELSV-VEANSTVLTIHIVFEGNKEFQLDIELWGVIDVE 60

Query: 166 KCRYEVLSTKVEIRLAKAEPIQWSSLE 192
           K    +L TKVEI+L KAEP  W+ LE
Sbjct: 61  KSSVNMLPTKVEIKLRKAEPGSWAKLE 87

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains. Length = 87

>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 112 QKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI-DVPGEEAYHFQ-PRLFGKIIPAK 166
           Q  + V + +  KG+   P +N+ V+F E+   + + D+ G+  Y F   RL  KI P K
Sbjct: 8   QSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKN-YRFTINRLLKKIDPEK 66

Query: 167 CRYEVLSTKVEIRLAKAEPIQWSSLE 192
             ++V + ++ I LAK +  +W SL 
Sbjct: 67  SSFKVKTDRIVITLAKKKEKKWESLT 92

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development. Length = 92

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 51.4 bits (124), Expect = 7e-09
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-------YHFQPRLFGKI 162
           +YQ  +EVVVTV   G+  +++ V+  + +L++S     EE        +     L   +
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 163 IPAKCRYEVLSTKVEIRLAK 182
            P K +  + +  +EI L K
Sbjct: 61  DPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|107240 cd06490, p23_NCB5OR, p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 111 YQKPEEVVVTVF--AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKII-PAKC 167
           +Q   EV + V+  +KG PA  V VD  ++ L V I + G+++Y     L  ++  P + 
Sbjct: 4   FQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEI-ILGDKSYLLHLDLSNEVQWPCEV 62

Query: 168 RYEVLSTKVEIRLAKAEPIQWSSL 191
           R    + K+E+ L K EP +W+SL
Sbjct: 63  RISTETGKIELVLKKKEPEKWTSL 86

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases. Length = 87

>gnl|CDD|220081 pfam08959, DUF1872, Domain of unknown function (DUF1872)

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 107 RHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQ------------ILSVSIDVPGEEAYH 153
           +++ Y+K  + VVV V+ K I      V F EQ             L +  D      + 
Sbjct: 81  KNDSYEKGTDLVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPDCGPNTHFR 140

Query: 154 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE--FSKGAVVPQRVNPPSVSGS 211
           +Q +L   I P +C Y    ++++I L K +  +W  LE   S+GAV   +V  PS    
Sbjct: 141 WQVKLRNLIEPEQCSYCFTPSRLDITLKKRQSQRWGGLEAPASQGAVGGAKVAVPSGPAP 200

Query: 212 PRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNK 250
              T P S    +   + EA+  ++EK +    D  L+ 
Sbjct: 201 MDKTQPGSSKHSLP-AQEEARAVEKEKAKARAEDTGLDP 238

The CS domain, found in Ubiquitin specific peptidase 19 (USP-19), has no known function. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	100.0
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	100.0
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	100.0
PF05002	82	SGS: SGS domain ; InterPro: IPR007699 This domain	100.0
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	99.92
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.9
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.87
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.86
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.82
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.81
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.8
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.78
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.69
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.68
cd06463	84	p23_like Proteins containing this p23_like domain	99.67
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.64
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.64
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.62
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.53
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.49
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.33
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.32
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.13
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	98.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.5
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.17
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.97
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.84
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.82
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.47
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.46
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.45
KOG0553	304	consensus TPR repeat-containing protein [General f	97.45
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.2
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.12
KOG4379	596	consensus Uncharacterized conserved protein (tumor	97.09
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.68
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.6
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.49
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.47
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	96.46
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.41
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.39
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.22
PF13371	73	TPR_9: Tetratricopeptide repeat	96.22
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.15
PF13428	44	TPR_14: Tetratricopeptide repeat	96.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.05
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	95.9
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	95.9
PRK15359	144	type III secretion system chaperone protein SscB;	95.64
PRK10743	137	heat shock protein IbpA; Provisional	95.63
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.26
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.02
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	94.92
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	94.71
PRK11597	142	heat shock chaperone IbpB; Provisional	94.66
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.21
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	93.92
PRK15359	144	type III secretion system chaperone protein SscB;	93.5
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	93.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.2
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	93.0
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.79
PRK11189	296	lipoprotein NlpI; Provisional	92.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	92.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.73
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.58
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.1
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	92.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.05
KOG4234	271	consensus TPR repeat-containing protein [General f	92.05
KOG0547	606	consensus Translocase of outer mitochondrial membr	91.59
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.31
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	91.15
PF13431	34	TPR_17: Tetratricopeptide repeat	90.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	89.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	89.71
KOG3364	149	consensus Membrane protein involved in organellar	89.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	89.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	88.79
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	88.2
PRK11189	296	lipoprotein NlpI; Provisional	88.05
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.99
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	87.7
KOG1126	638	consensus DNA-binding cell division cycle control	87.16
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	86.61
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	86.59
PRK15331	165	chaperone protein SicA; Provisional	86.49
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	86.01
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	85.0
PRK10803	263	tol-pal system protein YbgF; Provisional	84.36
PF13371	73	TPR_9: Tetratricopeptide repeat	84.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	83.24
PRK12370	553	invasion protein regulator; Provisional	83.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	82.96
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	82.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	82.75
KOG2076	895	consensus RNA polymerase III transcription factor	82.3
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	81.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	81.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	80.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	80.84
PRK12370	553	invasion protein regulator; Provisional	80.28

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=100.00  E-value=3.3e-80  Score=595.13  Aligned_cols=288  Identities=73%  Similarity=1.141  Sum_probs=238.6

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCC
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNI   80 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   80 (306)
                      ++.+|||+|++|+++++|++|+.+|++|.+++|++..+..|+.+|+.+|+......+.....  .++.  ....      
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~~--~~~~------  138 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLPS--SVTA------  138 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--cccc--cccc------
Confidence            36799999999999999999999999999999999999999999999997753221111000  0100  0000      


Q ss_pred             CCcccccccccccccccccCCCCCCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccc
Q 021870           81 SSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG  160 (306)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~  160 (306)
                      ...    +  .. ...+..++..+++||+|||++++|+|+||++|++++++.|+|++++|+|+|..+++..|.|.++||+
T Consensus       139 ~~~----~--~~-~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~  211 (356)
T PLN03088        139 PPV----E--EA-DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFG  211 (356)
T ss_pred             ccc----c--cc-ccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccc
Confidence            000    0  00 0112234456789999999999999999999999999999999999999998888889999999999


Q ss_pred             cccCCCceEEEeCCEEEEEEEeCCCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 021870          161 KIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE  240 (306)
Q Consensus       161 ~I~pe~s~~kv~~~KIEI~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e  240 (306)
                      +|+|+.|+|+|+++||||+|+|+++.+|++|+..+............. ....|+||||+++++|||||+.++++|+++|
T Consensus       212 ~I~p~~s~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e  290 (356)
T PLN03088        212 KIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSSE-VSQRPAYPSSKKKKDDWDKLEAEVKKEEKDE  290 (356)
T ss_pred             cccccccEEEEecceEEEEEecCCCCCccccccCCccccccCCCCCcC-cccCCCCCCCCCCCCChhhhhhhhhhhhhcc
Confidence            999999999999999999999999999999998764332111111111 1356899999888899999999998888888


Q ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccccCC
Q 021870          241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY  306 (306)
Q Consensus       241 ~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw~~  306 (306)
                      ++||+++||+||||||+||||||||||||||+|||||||||||+|||+++||++||+|||+|||++
T Consensus       291 ~~~g~~~~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~  356 (356)
T PLN03088        291 KLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY  356 (356)
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999986

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-70  Score=469.19  Aligned_cols=195  Identities=59%  Similarity=0.944  Sum_probs=176.8

Q ss_pred             CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021870          104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  183 (306)
Q Consensus       104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~  183 (306)
                      +++||||||+.+.|+|+||+++|+.++|.|.|+++.|++.+.+++|..|.|.+.|||+|+|+.|+|+++++||||+|.|.
T Consensus         2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~   81 (196)
T KOG1309|consen    2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA   81 (196)
T ss_pred             CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHH
Q 021870          184 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT  263 (306)
Q Consensus       184 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddt  263 (306)
                      +.++|..|++..+..........    ...-+||+|+. ++|||+|+.|++++|++++++ |||||+|||+||++|||||
T Consensus        82 ~~irW~~Le~g~~~~~~~~~~vs----~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv  155 (196)
T KOG1309|consen   82 EIIRWESLEKGKGSAVAPKPNVS----STASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV  155 (196)
T ss_pred             cchhhhhhhcccCcccccccccc----cccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence            89999999974333222111111    22347998876 889999999999999988887 8999999999999999999


Q ss_pred             HHHHHHhhhhcCCeeeccccccccCeeeccCCCCCcccccc
Q 021870          264 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  304 (306)
Q Consensus       264 kRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw  304 (306)
                      ||||||||.|||||||||||+|||+|+||++||+|||+|+|
T Consensus       156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~  196 (196)
T KOG1309|consen  156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW  196 (196)
T ss_pred             HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence            99999999999999999999999999999999999999999

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=100.00  E-value=4.5e-56  Score=401.94  Aligned_cols=282  Identities=24%  Similarity=0.387  Sum_probs=202.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCCCC
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISS   82 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   82 (306)
                      .|.||+|+|||++++|+.|..+|..|+.| +.|.+|+.|..+++.+|........+.......|...      +..+.  
T Consensus        80 ~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~-~~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vE------s~e~~--  150 (368)
T COG5091          80 LVNFRYFVHFFNIKDYELAQSYFKKAKNL-YVDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVE------SIENR--  150 (368)
T ss_pred             eehhhhHHHhhhHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHhHhhHhhccccCCCCCCchh------hhhcc--
Confidence            47899999999999999999999999999 8999999999999999988632211111111111100      00000  


Q ss_pred             ccccccccccccccc---c-cCCCCCC--CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC-ceEEEc
Q 021870           83 TEDVETVMDVSNEAA---M-AAPARPK--YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE-EAYHFQ  155 (306)
Q Consensus        83 ~~~~~~~~~~~~~~~---~-~~~~~~k--~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~-~~y~~~  155 (306)
                        ++.+. .+++-+|   . ++...++  ++|+|.||...+.|.||.+-+..++|.+-++++.|+|++..+.+ -.+.+.
T Consensus       151 --GD~~~-~~S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~  227 (368)
T COG5091         151 --GDNNS-SHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDIT  227 (368)
T ss_pred             --Ccccc-ccCCCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhh
Confidence              11111 1222222   1 1222344  45555555555555556666777889999999999999987644 446677


Q ss_pred             ccccccccCCCceEEEeCCEEEEEEEeCCCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhh
Q 021870          156 PRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKK  235 (306)
Q Consensus       156 l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~  235 (306)
                      +.||++|+|+.+++++.+.++||.|+|.+..+|..|................   ....+-|+|+.+++||+++..+.  
T Consensus       228 ~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e~~---N~~SAt~~s~~k~~Dw~~l~~~~--  302 (368)
T COG5091         228 ISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDEGK---NSDSATPKSSKKQDDWKELMVED--  302 (368)
T ss_pred             hhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccccccccccc---cccccCCccccccccHHHhhhhh--
Confidence            7999999999999999999999999999999999998763211000000000   11123477888899999998752  


Q ss_pred             hhhhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCcccccc
Q 021870          236 EEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  304 (306)
Q Consensus       236 ~~~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw  304 (306)
                       +.||+ +| ..+.+|||+||++|||||||||||||+|||||+|||||++|++|+|++.||+|||.|+|
T Consensus       303 -~~dEe-~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~  368 (368)
T COG5091         303 -SGDEE-NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW  368 (368)
T ss_pred             -ccccc-Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence             22221 23 34788999999999999999999999999999999999999999999999999999999

>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins

Probab=100.00  E-value=5.7e-42  Score=261.55  Aligned_cols=81  Identities=58%  Similarity=0.998  Sum_probs=31.9

Q ss_pred             CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccc
Q 021870          224 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK  303 (306)
Q Consensus       224 ~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kk  303 (306)
                      +||++|......+.++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++|+++||+|||+|+
T Consensus         2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~   81 (82)
T PF05002_consen    2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK   81 (82)
T ss_dssp             ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred             CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence            58999986544444455567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 021870          304 W  304 (306)
Q Consensus       304 w  304 (306)
                      |
T Consensus        82 ~   82 (82)
T PF05002_consen   82 W   82 (82)
T ss_dssp             -
T ss_pred             C
Confidence            9

Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=99.92  E-value=4.5e-25  Score=189.22  Aligned_cols=139  Identities=22%  Similarity=0.327  Sum_probs=120.5

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcc-cccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l-~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      .|.|.|++.+|.++|.+.||+.++|+|+|++.+|.+.++...|++|.+.+ +|+++|.|+.|+.+|.+..|.|.++|.+.
T Consensus        76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~  155 (224)
T KOG3260|consen   76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVEN  155 (224)
T ss_pred             hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhc
Confidence            39999999999999999999999999999999999999988899999999 99999999999999999999999999889


Q ss_pred             CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHHHH
Q 021870          186 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRR  265 (306)
Q Consensus       186 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddtkR  265 (306)
                      .+|.-|+......+.          ...|+|-                     .| .|++++||++|++||.|||+||||
T Consensus       156 ~rwd~Lt~~~Ke~Ke----------k~kpsl~---------------------ke-~DP~~glmnvmKk~YeDGD~~mK~  203 (224)
T KOG3260|consen  156 TRWDYLTQVEKECKE----------KEKPSLD---------------------KE-TDPSEGLMNVMKKIYEDGDDDMKQ  203 (224)
T ss_pred             ccchHHHHHHHHHhh----------ccCcccc---------------------cc-CChHHHHHHHHHHHHhcccHHHHH
Confidence            999999865433211          1233331                     11 246789999999999999999999


Q ss_pred             HHHHhhhhcCCe
Q 021870          266 AMKKSFVESNGT  277 (306)
Q Consensus       266 AM~KSf~ES~GT  277 (306)
                      +|+|+|+||+..
T Consensus       204 tIaKAWtesr~k  215 (224)
T KOG3260|consen  204 TIAKAWTESREK  215 (224)
T ss_pred             HHHHHHHHhhhh
Confidence            999999999753

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.90  E-value=1.6e-23  Score=163.04  Aligned_cols=87  Identities=36%  Similarity=0.566  Sum_probs=82.8

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      +||||||++++|+|+||+++++++++.|.|++++|+|++..++++.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus         1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488           1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence            69999999999999999999999999999999999998877777889999999999999999999999999999999998


Q ss_pred             CCCCcee
Q 021870          186 IQWSSLE  192 (306)
Q Consensus       186 ~~W~~L~  192 (306)
                      .+|++|+
T Consensus        81 ~~W~~Le   87 (87)
T cd06488          81 GSWAKLE   87 (87)
T ss_pred             CcCccCC
Confidence            9999985

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.87  E-value=8.3e-22  Score=152.06  Aligned_cols=84  Identities=37%  Similarity=0.757  Sum_probs=80.3

Q ss_pred             eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCC
Q 021870          109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  188 (306)
Q Consensus       109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W  188 (306)
                      ||||+.+.|+|+|++++++++++.|+|++++|+|++...++..|.|.++||++|+|++|+|++++++|||+|+|+++.+|
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W   80 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999987777789999999999999999999999999999999988999


Q ss_pred             Ccee
Q 021870          189 SSLE  192 (306)
Q Consensus       189 ~~L~  192 (306)
                      ++|+
T Consensus        81 ~~Le   84 (84)
T cd06489          81 SKLE   84 (84)
T ss_pred             ccCC
Confidence            9995

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.86  E-value=2.8e-21  Score=155.98  Aligned_cols=102  Identities=20%  Similarity=0.348  Sum_probs=89.0

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC-
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  185 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~-  185 (306)
                      .++|||+.+.|+|||+++++  .+++|+|++++|+|++...+|..|.+.|+||++|+|++|+|++++++|+|+|+|++. 
T Consensus         3 ~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~   80 (106)
T cd00237           3 KTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG   80 (106)
T ss_pred             cceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence            57999999999999999984  899999999999999865466789999999999999999999999999999999875 


Q ss_pred             CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 021870          186 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  231 (306)
Q Consensus       186 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~  231 (306)
                      .+|++|++...                ++.|-     ++|||||.+
T Consensus        81 ~~WprL~k~~~----------------k~~~l-----k~DfdkW~D  105 (106)
T cd00237          81 VAWPRLTKEKA----------------KPNWL-----SVDFDNWRD  105 (106)
T ss_pred             CCCchhhcCCC----------------CCCcE-----ECcchhccC
Confidence            58999998632                34454     679999974

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.82  E-value=4.7e-20  Score=148.92  Aligned_cols=87  Identities=23%  Similarity=0.360  Sum_probs=80.4

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC-CCceEEEcccccccccCCCceEEEeCCEEEEEEEeCC-
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE-  184 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~-~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~-  184 (306)
                      .|+||||.+.|+|+|+++++  +++.|.|++++|+|++... ++..|.+.++||++|+|++|+|++.+++|+|+|+|++ 
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~   79 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA   79 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence            58999999999999999998  8899999999999998653 5677999999999999999999999999999999999 


Q ss_pred             CCCCCceeecc
Q 021870          185 PIQWSSLEFSK  195 (306)
Q Consensus       185 ~~~W~~L~~~~  195 (306)
                      +.+|++|+..+
T Consensus        80 ~~~W~~L~~~~   90 (108)
T cd06465          80 GEYWPRLTKEK   90 (108)
T ss_pred             CCCCcccccCC
Confidence            78999998753

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.81  E-value=2.3e-19  Score=140.45  Aligned_cols=86  Identities=27%  Similarity=0.466  Sum_probs=79.9

Q ss_pred             CeeeecCCCeEEEEEEecCCCC---CccEEEeeccEEEEEEEcCCCceEEEccc-ccccccCCCceEEEeCCEEEEEEEe
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK  182 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~---e~v~V~f~~~~l~v~i~~~~~~~y~~~l~-L~~~I~pe~s~~kv~~~KIEI~L~K  182 (306)
                      +|+|||+.+.|+|+|+++++..   +++.|+|++++|.|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K   82 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK   82 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence            7999999999999999998865   89999999999999987667788999984 9999999999999999999999999


Q ss_pred             CCCCCCCcee
Q 021870          183 AEPIQWSSLE  192 (306)
Q Consensus       183 ~~~~~W~~L~  192 (306)
                      +++.+|++|+
T Consensus        83 ~~~~~W~~L~   92 (92)
T cd06468          83 KKEKKWESLT   92 (92)
T ss_pred             CCCCccCccC
Confidence            9889999984

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.80  E-value=2.1e-19  Score=137.73  Aligned_cols=84  Identities=49%  Similarity=0.782  Sum_probs=79.0

Q ss_pred             eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCC
Q 021870          109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  188 (306)
Q Consensus       109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W  188 (306)
                      ||||+++.|+|+|+++|+.++++.|.|++++|.|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|+++..|
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W   80 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999875546689999999999999999999999999999999998999


Q ss_pred             Ccee
Q 021870          189 SSLE  192 (306)
Q Consensus       189 ~~L~  192 (306)
                      ++|+
T Consensus        81 ~~L~   84 (84)
T cd06466          81 PSLE   84 (84)
T ss_pred             ccCC
Confidence            9985

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.78  E-value=9.1e-19  Score=136.45  Aligned_cols=83  Identities=29%  Similarity=0.444  Sum_probs=73.3

Q ss_pred             eeeecCCCeEEEEEEecC--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEe--CCEEEEEEEeC
Q 021870          108 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL--STKVEIRLAKA  183 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~--~~KIEI~L~K~  183 (306)
                      |||||+++.|+|+||+|+  .+..++.+.+..++|+|++..+ +..|.++++|||+|+|+. ++++.  ++||||+|+|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~   78 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK   78 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence            799999999999999985  5667788888998999998876 778999999999998665 88988  55999999999


Q ss_pred             CCCCCCcee
Q 021870          184 EPIQWSSLE  192 (306)
Q Consensus       184 ~~~~W~~L~  192 (306)
                      ++..|++|+
T Consensus        79 e~~~W~~Lg   87 (87)
T cd06490          79 EPEKWTSLG   87 (87)
T ss_pred             CCCccccCc
Confidence            999999984

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.69  E-value=1.7e-16  Score=119.21  Aligned_cols=77  Identities=38%  Similarity=0.581  Sum_probs=69.8

Q ss_pred             CCeeeecCCCeEEEEEEecCCC--CCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  182 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~--~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K  182 (306)
                      +||+|+|+.+.|+|+|++++..  ++++.|+|++++|.|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            4899999999999999997764  8999999999999999886666899999999999999999999999999999997

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.68  E-value=1.7e-16  Score=120.15  Aligned_cols=78  Identities=26%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCCC
Q 021870          110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS  189 (306)
Q Consensus       110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W~  189 (306)
                      |+|+++.|+|+|+++|+.++++.|+++++.|.|++     ..|.+.++||++|+|+.|++++.+++|+|+|.|+++.+|+
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~   75 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE   75 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence            99999999999999999999999999998877754     4699999999999999999999999999999999889999


Q ss_pred             cee
Q 021870          190 SLE  192 (306)
Q Consensus       190 ~L~  192 (306)
                      +|+
T Consensus        76 ~L~   78 (78)
T cd06469          76 ALC   78 (78)
T ss_pred             ccC
Confidence            985

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.67  E-value=3.4e-16  Score=118.44  Aligned_cols=83  Identities=37%  Similarity=0.636  Sum_probs=77.8

Q ss_pred             eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC-CCC
Q 021870          110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW  188 (306)
Q Consensus       110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~-~~W  188 (306)
                      |+|+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.+.||++|+|+.|++++.+++|+|+|.|+.+ .+|
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W   80 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW   80 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence            9999999999999999999999999999999999875546789999999999999999999999999999999988 899


Q ss_pred             Ccee
Q 021870          189 SSLE  192 (306)
Q Consensus       189 ~~L~  192 (306)
                      ++|+
T Consensus        81 ~~l~   84 (84)
T cd06463          81 PRLE   84 (84)
T ss_pred             cccC
Confidence            9984

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.64  E-value=1e-15  Score=118.55  Aligned_cols=82  Identities=16%  Similarity=0.329  Sum_probs=71.8

Q ss_pred             eeeecCCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeCCC
Q 021870          108 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP  185 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~~~  185 (306)
                      |+|+||.+.|+|+|++ +++.++++.|.|++++|.|.+.  ++ ...+.++||+.|+|++|+|++... +|+|+|.|+++
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence            7999999999999999 5899999999999999999874  33 345788999999999999999655 79999999986


Q ss_pred             -CCCCcee
Q 021870          186 -IQWSSLE  192 (306)
Q Consensus       186 -~~W~~L~  192 (306)
                       .+|++|.
T Consensus        78 ~~~W~~L~   85 (85)
T cd06493          78 GPTWPELV   85 (85)
T ss_pred             CccccccC
Confidence             5999983

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.64  E-value=1.4e-15  Score=117.01  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=73.8

Q ss_pred             eeeecCCCeEEEEEEec-CCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeC-CEEEEEEEeCCC
Q 021870          108 HEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP  185 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k-~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K~~~  185 (306)
                      |.|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++..   ..+.+...||++|+|++|+|++.+ ++|+|+|+|+++
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence            78999999999999884 6788999999999999998752   357888899999999999999999 999999999987


Q ss_pred             -CCCCce
Q 021870          186 -IQWSSL  191 (306)
Q Consensus       186 -~~W~~L  191 (306)
                       .+|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06467          78 GEWWPSL   84 (85)
T ss_pred             Ccccccc
Confidence             799987

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.3e-16  Score=134.20  Aligned_cols=104  Identities=25%  Similarity=0.331  Sum_probs=89.4

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      -+.|+|+.+.|+|+|.+.+  ..++.|.+++..|+|+... .++..|.+.|.||++|+|++|++++.++.|.++|+|++.
T Consensus         9 ~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~   86 (180)
T KOG3158|consen    9 EVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKEL   86 (180)
T ss_pred             cchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcccc
Confidence            3689999999999999974  4788999999999999875 456667788999999999999999999999999999887


Q ss_pred             -CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 021870          186 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV  233 (306)
Q Consensus       186 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~  233 (306)
                       .+||||++..                .++.|.     ++|||||.+|.
T Consensus        87 ~~~WprLtkeK----------------~K~hwL-----kvDFdkW~Ded  114 (180)
T KOG3158|consen   87 GEYWPRLTKEK----------------AKLHWL-----KVDFDKWVDED  114 (180)
T ss_pred             ccccchhhhcc----------------cccceE-----Ecchhhccccc
Confidence             8999999863                346675     56999999764

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.53  E-value=2.2e-14  Score=129.43  Aligned_cols=92  Identities=33%  Similarity=0.485  Sum_probs=85.5

Q ss_pred             CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021870          104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  182 (306)
Q Consensus       104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K  182 (306)
                      .++||||.||+..|+|+||.++..++...|+.+...|+|++.. .++..|.++++|++.|++++|++.+..+||||+|+|
T Consensus       213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k  292 (320)
T KOG1667|consen  213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK  292 (320)
T ss_pred             ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence            5789999999999999999999888899999999999999876 466789999999999999999999999999999999


Q ss_pred             CCCCCCCceeecc
Q 021870          183 AEPIQWSSLEFSK  195 (306)
Q Consensus       183 ~~~~~W~~L~~~~  195 (306)
                      ++++.|.+|+...
T Consensus       293 ~ep~sWa~Le~p~  305 (320)
T KOG1667|consen  293 AEPGSWARLEFPP  305 (320)
T ss_pred             cCCCCcccccCCH
Confidence            9999999998753

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.49  E-value=1.5e-13  Score=108.39  Aligned_cols=81  Identities=26%  Similarity=0.503  Sum_probs=71.9

Q ss_pred             CeeeecCCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCE-EEEEEEeCC
Q 021870          107 RHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE  184 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~K-IEI~L~K~~  184 (306)
                      +|.|+||.+.|+|+|.+ +++...++.|.|++++|.|.+.   |.. .+...||+.|+|++|+|.+.+++ |+|.|.|.+
T Consensus         7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~   82 (93)
T cd06494           7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN   82 (93)
T ss_pred             CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence            79999999999999954 6899999999999999999874   334 67789999999999999999999 699999986


Q ss_pred             CC---CCCce
Q 021870          185 PI---QWSSL  191 (306)
Q Consensus       185 ~~---~W~~L  191 (306)
                      ..   .|++|
T Consensus        83 ~~~~~~W~sl   92 (93)
T cd06494          83 RDAGNCWKSL   92 (93)
T ss_pred             CCCCcccccc
Confidence            54   89987

Little is known about the function of the proteins in this subgroup.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.33  E-value=9.5e-12  Score=96.96  Aligned_cols=82  Identities=22%  Similarity=0.295  Sum_probs=71.6

Q ss_pred             eeeecCCCeEEEEEEec-C--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeC
Q 021870          108 HEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  183 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k-~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~  183 (306)
                      |.|.||.+.|.|+|.++ +  +...++.|+|+.++|.|.+.   |..+.++.+||++|++++|+|.+.++ .|+|+|.|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~   77 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI   77 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence            78999999999999884 2  67899999999999999874   33578899999999999999999874 799999999


Q ss_pred             CC-CCCCcee
Q 021870          184 EP-IQWSSLE  192 (306)
Q Consensus       184 ~~-~~W~~L~  192 (306)
                      .+ .+|++|.
T Consensus        78 ~~~~wW~~l~   87 (87)
T cd06492          78 NKMEWWSRLV   87 (87)
T ss_pred             CCCccccccC
Confidence            76 7999873

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.32  E-value=1.4e-11  Score=98.81  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             CeeeecCCCeEEEEEEec-CC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeC
Q 021870          107 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  183 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k-~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~  183 (306)
                      +|.|.||.+.|.|+|.++ ++ ...++.|+|+.++|.|.+...++..-.++.+||+.|+++.|+|.+.++ .|+|+|.|.
T Consensus         6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~   85 (102)
T cd06495           6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC   85 (102)
T ss_pred             ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence            699999999999999986 43 578999999999999998643333345888999999999999999885 589999998


Q ss_pred             CCCCCCceeecc
Q 021870          184 EPIQWSSLEFSK  195 (306)
Q Consensus       184 ~~~~W~~L~~~~  195 (306)
                      ...+|++|...+
T Consensus        86 ~~~wW~~v~~g~   97 (102)
T cd06495          86 SEVWWNAVLKGE   97 (102)
T ss_pred             CCcccchhhCCC
Confidence            778999997643

Little is known about the function of the proteins in this subgroup.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.13  E-value=1.9e-10  Score=84.70  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC-------CCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021870          110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  182 (306)
Q Consensus       110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~-------~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K  182 (306)
                      |+|+++.|+|+|+++++.++++.|.+.++.|.|++...       +...|.+.+.|+++|+|+.+++.+.++.|+|.|.|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK   80 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence            99999999999999999999999999999999998653       24689999999999999999999999999999986

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=98.89  E-value=1e-08  Score=88.58  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CCeeeecCCCeEEEEEEe-cCC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021870          106 YRHEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  183 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~-k~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~  183 (306)
                      -.|.|+||-..|.|.|.+ +|+ ...+|.|.+..++|.|.+.   |.+-.+..+|+++|.+++|.|.|..+++.+++-|+
T Consensus        19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K   95 (179)
T KOG2265|consen   19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK   95 (179)
T ss_pred             cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence            369999999999999866 566 7789999999999888865   44578889999999999999999999766666555


Q ss_pred             CC--CCCCceeeccC
Q 021870          184 EP--IQWSSLEFSKG  196 (306)
Q Consensus       184 ~~--~~W~~L~~~~~  196 (306)
                      ..  .+|.+|...+.
T Consensus        96 ~~~~eWW~~ll~gep  110 (179)
T KOG2265|consen   96 SNKMEWWDSLLEGEP  110 (179)
T ss_pred             cchHHHHHHHHcCCC
Confidence            44  79999987653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.50  E-value=2.3e-08  Score=98.36  Aligned_cols=254  Identities=17%  Similarity=0.059  Sum_probs=145.2

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCC
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNI   80 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   80 (306)
                      ..|||||||.||.+|++|.+|+.+|+.+..+.|+|+.+.+-++.|+..+..+.-+..+....+....   +....     
T Consensus        71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s---~~~~~-----  142 (476)
T KOG0376|consen   71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKS---VVEMK-----  142 (476)
T ss_pred             hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcc---ccccc-----
Confidence            3689999999999999999999999999999999999999999999999886322111111100000   00000     


Q ss_pred             CCcccccccccccccccccCCCCCCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccc
Q 021870           81 SSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG  160 (306)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~  160 (306)
                      ...    .  +..+ .+ ....-+.++..               .++.+.++.-+     .+ +  .  ..+.+.-.+++
T Consensus       143 ~~~----~--~~~~-i~-~~y~g~~le~~---------------kvt~e~vk~~~-----~~-~--~--~~~~L~~k~a~  189 (476)
T KOG0376|consen  143 IDE----E--DMDL-IE-SDYSGPVLEDH---------------KVTLEFVKTLM-----EV-F--K--NQKKLPKKYAY  189 (476)
T ss_pred             ccc----c--cccc-cc-cccCCcccccc---------------hhhHHHHHHHH-----Hh-h--h--cccccccccce
Confidence            000    0  0000 00 00111111111               11122221111     00 0  0  12333445556


Q ss_pred             cccCCCceE-EEeCCEEEEEEEeCCC-CCCCceeeccCcc-cCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhh
Q 021870          161 KIIPAKCRY-EVLSTKVEIRLAKAEP-IQWSSLEFSKGAV-VPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE  237 (306)
Q Consensus       161 ~I~pe~s~~-kv~~~KIEI~L~K~~~-~~W~~L~~~~~~~-~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~  237 (306)
                      .|++..+++ .+.+..|+|.   ... .+|.-....-++. ....+-....-++....|-    ...||..+.....+-.
T Consensus       190 ~i~~~~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~yl----fngdfv~rgs~s~e~~  262 (476)
T KOG0376|consen  190 SILDLAKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYL----FNGDFVDRGSWSVEVI  262 (476)
T ss_pred             eeHHHHhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhhcCCCCCccccc----ccCceeeecccceeee
Confidence            666665544 4566777777   333 4454443332211 0000000000001112221    2336665554322223


Q ss_pred             hhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccccC
Q 021870          238 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE  305 (306)
Q Consensus       238 ~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw~  305 (306)
                      ......+....|+||-..+.-.+++|.+.|-..+-...+++..++|..+   .+..-+|.|+....|.
T Consensus       263 ~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~~  327 (476)
T KOG0376|consen  263 LTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNKV  327 (476)
T ss_pred             eeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCce
Confidence            3345567778999999999999999999999999999999999999998   7788899999887763

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=1e-06  Score=55.67  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      |++||++|.+|+.+++|+.|+.+|++|.+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            6799999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=3.4e-06  Score=81.78  Aligned_cols=52  Identities=25%  Similarity=0.388  Sum_probs=50.4

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      |.||+||||.||..+++|+.|+.+|+++++++|.++.+...|.+|..++.+.
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999886

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.97  E-value=5.6e-06  Score=51.84  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      |+++|++|.+|+.+++|+.|+.+|++|.+++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            6799999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.84  E-value=0.0001  Score=57.55  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeecc-EEEEEEEcC-----C----------CceEEEcccccccccCCCceEE
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE  170 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~-~l~v~i~~~-----~----------~~~y~~~l~L~~~I~pe~s~~k  170 (306)
                      |++|+.+++.+.|.+.++|+.++++.|.+..+ .|+|+....     .          ...|.-.+.|-..|+++..+..
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            57999999999999999999999999999864 788887421     1          1256667899999999988888


Q ss_pred             EeCCEEEEEEEe
Q 021870          171 VLSTKVEIRLAK  182 (306)
Q Consensus       171 v~~~KIEI~L~K  182 (306)
                      ....-++|+|.|
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            899999999875

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00014  Score=61.79  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC---------------CceEEEcccccccccCCCceE
Q 021870          105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRY  169 (306)
Q Consensus       105 k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~---------------~~~y~~~l~L~~~I~pe~s~~  169 (306)
                      .+.|+.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+               ...|.-.+.|...|+|+..+-
T Consensus        40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A  119 (146)
T COG0071          40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA  119 (146)
T ss_pred             CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence            45699999999999999999999999999999999999986543               135777889999999998888


Q ss_pred             EEeCCEEEEEEEeCCC
Q 021870          170 EVLSTKVEIRLAKAEP  185 (306)
Q Consensus       170 kv~~~KIEI~L~K~~~  185 (306)
                      +...+-+.|.|.|..+
T Consensus       120 ~~~nGvL~I~lpk~~~  135 (146)
T COG0071         120 KYKNGLLTVTLPKAEP  135 (146)
T ss_pred             EeeCcEEEEEEecccc
Confidence            9999999999999754

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.49  E-value=0.0006  Score=53.10  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC--------C---------ceEEEcccccccccCCCceE
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY  169 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~--------~---------~~y~~~l~L~~~I~pe~s~~  169 (306)
                      +.+++++++.+.|.+.++|+.++++.|.+.++.|.|+.....        +         ..|.-.+.|- .|+++..+.
T Consensus         2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A   80 (93)
T cd06471           2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA   80 (93)
T ss_pred             ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence            689999999999999999999999999999999999764321        0         1244445664 788888888


Q ss_pred             EEeCCEEEEEEEe
Q 021870          170 EVLSTKVEIRLAK  182 (306)
Q Consensus       170 kv~~~KIEI~L~K  182 (306)
                      ++...-+.|+|.|
T Consensus        81 ~~~dGvL~I~lPK   93 (93)
T cd06471          81 KYENGVLKITLPK   93 (93)
T ss_pred             EEECCEEEEEEcC
Confidence            8999999999865

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.47  E-value=0.00012  Score=53.08  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +|.+|+++|.+++.+++|+.|+.+|++|.+++|++..+-..+..|...+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999988888888877665

...

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.46  E-value=0.00065  Score=51.35  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC--------------CceEEEcccccccccCCCceEEEeCC
Q 021870          109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST  174 (306)
Q Consensus       109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~--------------~~~y~~~l~L~~~I~pe~s~~kv~~~  174 (306)
                      +++++++.+.|.|.++|+.++++.|.+.++.|.|+.....              ...|.-.+.|-..|+++..+..+..+
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            4688899999999999999999999999999999864321              34688889999999999999999999


Q ss_pred             EEEEEEEe
Q 021870          175 KVEIRLAK  182 (306)
Q Consensus       175 KIEI~L~K  182 (306)
                      -++|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            99998865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.45  E-value=0.0012  Score=52.07  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----CC---------ceEEEcccccccccCCCceEEEeCCE
Q 021870          109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK  175 (306)
Q Consensus       109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~~---------~~y~~~l~L~~~I~pe~s~~kv~~~K  175 (306)
                      ||+++++.+.|.+.++|+.++++.|.+.++.|.|+....    ++         ..|.-.+.|-..|+++..+.++..+-
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv   80 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV   80 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence            789999999999999999999999999999999887432    21         24666788999999999899999999


Q ss_pred             EEEEEEeCCC
Q 021870          176 VEIRLAKAEP  185 (306)
Q Consensus       176 IEI~L~K~~~  185 (306)
                      +.|++.|...
T Consensus        81 L~I~~pk~~~   90 (102)
T PF00011_consen   81 LTITIPKKEE   90 (102)
T ss_dssp             EEEEEEBSSS
T ss_pred             EEEEEEcccc
Confidence            9999999653

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.00014  Score=68.31  Aligned_cols=51  Identities=33%  Similarity=0.473  Sum_probs=46.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +|||-|.|+||+.+++|++|..+|++|.+++|.....+.=+..++.+|.+.
T Consensus       149 skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  149 SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999998888788887777664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0002  Score=71.63  Aligned_cols=48  Identities=29%  Similarity=0.442  Sum_probs=46.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      .++|+|+|.|++.+++|+.|+.+|+.|.+++|+...+..|+.+|-..+
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999998776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.20  E-value=0.00021  Score=44.69  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=30.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAP   33 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~   33 (306)
                      |++||.+|.+|..+++|+.|..+|++|.+++|
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            57899999999999999999999999999988

...

>smart00028 TPR Tetratricopeptide repeats

Probab=97.12  E-value=0.00044  Score=40.41  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=30.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      +.+|+++|.+|+.+++|+.|..+|+.+.++.|.
T Consensus         1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            368999999999999999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=97.09  E-value=0.0012  Score=65.02  Aligned_cols=87  Identities=15%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             CCeeeecCCCeEEEEEEecC-CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeC-CEEEEEEEeC
Q 021870          106 YRHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA  183 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~-v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K~  183 (306)
                      ..|.|.|+.+.|.|++.++. +...++.|.+..+.|.+.+.    ..-.|...||+.|..+.|.|.|.. .++|+.|.|+
T Consensus       290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~  365 (596)
T KOG4379|consen  290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKA  365 (596)
T ss_pred             ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeec
Confidence            46999999999999999864 45688999999888776653    245677899999999999999865 8999999999


Q ss_pred             CC-CCCCceeeccC
Q 021870          184 EP-IQWSSLEFSKG  196 (306)
Q Consensus       184 ~~-~~W~~L~~~~~  196 (306)
                      +. ..|++|...+.
T Consensus       366 de~~twprL~~~dk  379 (596)
T KOG4379|consen  366 DEIQTWPRLFAQDK  379 (596)
T ss_pred             ccccccchheeecc
Confidence            54 78999986644

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.68  E-value=0.0038  Score=44.12  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .++|=.++++|.+++|..|+.+.+.+.+++|++.....-...++.++.+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd   51 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD   51 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence            36788899999999999999999999999999999988888888888764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.60  E-value=0.001  Score=48.03  Aligned_cols=32  Identities=41%  Similarity=0.607  Sum_probs=30.2

Q ss_pred             hhhhhhhhhhhhccc-cHHHHHHHHHHhhccCC
Q 021870            2 SKAYWRKATACMKLE-EYETAKVALEKGASLAP   33 (306)
Q Consensus         2 aka~~R~Gia~~~l~-~y~~A~~~l~~a~~~~~   33 (306)
                      +.+|+++|.+|+.++ +|+.|+.+|++|.+++|
T Consensus        37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            568999999999999 89999999999999987

...

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.49  E-value=0.016  Score=44.90  Aligned_cols=72  Identities=8%  Similarity=0.101  Sum_probs=59.9

Q ss_pred             eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC----C----ceEEEcccccccccCCCceEEEe-CCEEEEE
Q 021870          109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  179 (306)
Q Consensus       109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~----~----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~  179 (306)
                      +++.+++.+.|.+.++|+.++++.|.+.++.|.|+.....    +    ..|.-.+.|-..|++++.+-... ..-+.|.
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~   83 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE   83 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence            7899999999999999999999999999999999875421    1    23666788999999998888886 7777776


Q ss_pred             E
Q 021870          180 L  180 (306)
Q Consensus       180 L  180 (306)
                      |
T Consensus        84 l   84 (86)
T cd06475          84 A   84 (86)
T ss_pred             e
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.47  E-value=0.013  Score=44.77  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=56.9

Q ss_pred             CeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC--------ceEEEcccccccccCCCceEEEeC-CEEEEEEEe
Q 021870          115 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK  182 (306)
Q Consensus       115 ~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~--------~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K  182 (306)
                      +.+.|.+.++|+.+++|.|.+.++.|.|+......        ..|.-.+.|-..|+++..+.++.. .-+.|.+.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            47889999999999999999999999998753211        257778899999999988888887 888888865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=96.46  E-value=0.015  Score=44.58  Aligned_cols=72  Identities=8%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC--CC---ceEEEcccccccccCCCceEEE-eCCEEEEEEEe
Q 021870          111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  182 (306)
Q Consensus       111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~--~~---~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L~K  182 (306)
                      +.+++.+.|.+.++|+.++++.|.+.++.|+|+....  .+   ..|.-.+.|-..|+++..+-.+ ....+.|+|.+
T Consensus         4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            4577889999999999999999999999999987431  22   2577788999999999988887 77888888863

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0028  Score=63.61  Aligned_cols=45  Identities=27%  Similarity=0.430  Sum_probs=43.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +|+|+|+|.|++.|++|++|..+|..|.+++|+.+.|..=+..+.
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            689999999999999999999999999999999999998888887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.41  E-value=0.0018  Score=46.27  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      |.+|.+++..++|+.|...|+.+.+..|.+.....++..|....
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~   44 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ   44 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            45677777777777777777777777777776666666665543

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.39  E-value=0.017  Score=44.72  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----CC----ceEEEcccccccccCCCceEEE-eCCEEEEEEE
Q 021870          111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA  181 (306)
Q Consensus       111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~~----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L~  181 (306)
                      +.+++.+.|.+.++|+.++++.|.+.++.|+|+....    ++    ..|.-.+.|-..|+++..+-.+ ...-+.|+|.
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            5678889999999999999999999999999987531    11    1355578899999999998888 5788999886


Q ss_pred             e
Q 021870          182 K  182 (306)
Q Consensus       182 K  182 (306)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0044  Score=59.58  Aligned_cols=51  Identities=24%  Similarity=0.369  Sum_probs=48.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++||||+|.++..+++|++|+..++.|+.+.|.|..|...+.....++...
T Consensus       309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            689999999999999999999999999999999999999999988887775

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.22  E-value=0.0081  Score=48.68  Aligned_cols=48  Identities=21%  Similarity=0.367  Sum_probs=33.7

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      ..||.+|.+|+.+++|+.|...|+.+.+++|++..+..+..+|...++
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            456677777777777777777777777777777777777776666554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.22  E-value=0.0047  Score=44.93  Aligned_cols=43  Identities=26%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE   44 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k   44 (306)
                      +.+++.+|.+|+.+|+|..|..+|+.+.++.|++........+
T Consensus        29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   29 PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4578889999999999999999999999999988877666554

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=96.15  E-value=0.028  Score=43.34  Aligned_cols=71  Identities=8%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc-----eEEEcccccccccCCCceEEEe-CCEEEEEEEeC
Q 021870          113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAKA  183 (306)
Q Consensus       113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~-----~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K~  183 (306)
                      +++.+.|.+.++|+.++++.|.+.++.|+|+....   .+.     .|.-.+.|-..|+++..+-+.. .+-+.|+|.|+
T Consensus         5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498           5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence            56788999999999999999999999999987532   111     2556678999999999999995 88999998764

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.12  E-value=0.0064  Score=40.62  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=34.4

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN   40 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~   40 (306)
                      .+++..|.+|..+|+++.|...|+++.+.+|+|...-.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~   39 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            57899999999999999999999999999999876443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.05  E-value=0.0045  Score=37.94  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=29.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      .|+|+.|.+++.+++++.|...|++....-|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            48999999999999999999999998877664

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=95.90  E-value=0.037  Score=42.46  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             cCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEEe-CCEEEEEEEe
Q 021870          112 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  182 (306)
Q Consensus       112 Qt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K  182 (306)
                      .+++.+.|.+.++|+.++++.|.+.++.|.|+....   .+     ..|.-.+.|-..|+++..+-.+. .+-+.|.|-|
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478           4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            356789999999999999999999999999987432   11     23566778989999998888884 7788888765

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=95.90  E-value=0.076  Score=41.20  Aligned_cols=72  Identities=13%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             eeeecCC-CeEEEEEEecCCCCCccEEEeeccEEEEEEEcC--C------------CceEEEcccccccccCCCceEEEe
Q 021870          108 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G------------EEAYHFQPRLFGKIIPAKCRYEVL  172 (306)
Q Consensus       108 ~dWyQt~-~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~--~------------~~~y~~~l~L~~~I~pe~s~~kv~  172 (306)
                      ++=++++ +.+.|.+.++|+.++++.|.+..+.|.|+....  .            -..|.-.+.|-..|+..  +....
T Consensus         3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~   80 (90)
T cd06470           3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE   80 (90)
T ss_pred             eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence            4556764 899999999999999999999999999986421  1            12466677888888875  56778


Q ss_pred             CCEEEEEEE
Q 021870          173 STKVEIRLA  181 (306)
Q Consensus       173 ~~KIEI~L~  181 (306)
                      ..-+.|+|.
T Consensus        81 ~GvL~I~l~   89 (90)
T cd06470          81 NGLLTIDLE   89 (90)
T ss_pred             CCEEEEEEE
Confidence            888888875

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.64  E-value=0.022  Score=47.82  Aligned_cols=36  Identities=11%  Similarity=0.214  Sum_probs=18.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      .++|++|++++.+|++++|..+|+++..++|++...
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~  128 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW  128 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            344555555555555555555555555555544433

>PRK10743 heat shock protein IbpA; Provisional

Probab=95.63  E-value=0.11  Score=43.90  Aligned_cols=76  Identities=11%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCeeeec-CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc----------eEEEcccccccccCCCceEEE
Q 021870          106 YRHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEV  171 (306)
Q Consensus       106 ~r~dWyQ-t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~----------~y~~~l~L~~~I~pe~s~~kv  171 (306)
                      +.++-++ +++.+.|.+.++|+.+++|.|.+.++.|+|+....   .+.          .|.-.+.|-..|++++  -..
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~  112 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL  112 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE
Confidence            3578884 89999999999999999999999999999987431   111          3455678989999984  677


Q ss_pred             eCCEEEEEEEeC
Q 021870          172 LSTKVEIRLAKA  183 (306)
Q Consensus       172 ~~~KIEI~L~K~  183 (306)
                      ..+-+.|+|.|.
T Consensus       113 ~dGVL~I~lPK~  124 (137)
T PRK10743        113 VNGLLYIDLERV  124 (137)
T ss_pred             eCCEEEEEEeCC
Confidence            888999999985

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.26  E-value=0.021  Score=40.62  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.++|++|.+|+.+++|++|...|+++.+++|+++
T Consensus        31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   31 PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999999999999864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.02  E-value=0.022  Score=40.70  Aligned_cols=41  Identities=22%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI   42 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi   42 (306)
                      ..+++..|.+|+.+|+|+.|...|++....+|+++.+..-+
T Consensus        25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen   25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            45677777778888888888888877777777765554433

...

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=94.92  E-value=0.16  Score=39.06  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEEe-CCEEEEEEEe
Q 021870          113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  182 (306)
Q Consensus       113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K  182 (306)
                      .++...|.+.++|+.++++.|++.++.|.|+....   .+     ..|.-.+.|-..|+++..+-+.. .+-+.|.|-|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            35678899999999999999999999999987531   11     13555678999999999888886 7888888754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=94.71  E-value=0.14  Score=39.66  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----C--C------ceEEEcccccccccCCCceEEE-eCCEEEEEE
Q 021870          114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----G--E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRL  180 (306)
Q Consensus       114 ~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~--~------~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L  180 (306)
                      .+.+.|.+.++|+.+++|.|.+..+.|.|+....    +  +      ..|.-.+.|-..|+++..+-.+ ...-+.|.+
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   85 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA   85 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence            4678899999999999999999999999987421    1  1      2355567898999999888788 556666654

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=94.66  E-value=0.28  Score=41.68  Aligned_cols=75  Identities=11%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             Ceeeec-CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc----------eEEEcccccccccCCCceEEEe
Q 021870          107 RHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL  172 (306)
Q Consensus       107 r~dWyQ-t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~----------~y~~~l~L~~~I~pe~s~~kv~  172 (306)
                      .++=++ +++.+.|++.++|+.+++|.|.+.++.|+|+....   .+.          .|.-.+.|-..|+++  +-+..
T Consensus        34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~  111 (142)
T PRK11597         34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFV  111 (142)
T ss_pred             cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEc
Confidence            467787 46789999999999999999999999999987521   111          355567788889987  46788


Q ss_pred             CCEEEEEEEeC
Q 021870          173 STKVEIRLAKA  183 (306)
Q Consensus       173 ~~KIEI~L~K~  183 (306)
                      .+-+.|+|-|.
T Consensus       112 nGVL~I~lPK~  122 (142)
T PRK11597        112 NGLLHIDLIRN  122 (142)
T ss_pred             CCEEEEEEecc
Confidence            88999999985

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.21  E-value=0.03  Score=35.80  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=24.3

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASL   31 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~   31 (306)
                      ||...|.+|..+++|+.|..+|+++..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6889999999999999999999996644

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=93.92  E-value=0.29  Score=46.30  Aligned_cols=65  Identities=25%  Similarity=0.362  Sum_probs=54.1

Q ss_pred             CCeEEEEEEecCC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEe--CCEEEEEEE
Q 021870          114 PEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL--STKVEIRLA  181 (306)
Q Consensus       114 ~~~V~ItI~~k~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~--~~KIEI~L~  181 (306)
                      ...+.|+|.++++ ...++.+++.++.|.|.+...   .|.|.|.|-.+|+++.++-+..  ...+.|+|.
T Consensus       260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            6789999999998 668999999999999887522   7999999999999999866654  457888773

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.50  E-value=0.11  Score=43.51  Aligned_cols=47  Identities=21%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      +.+|+.+|.+|..+++|++|...|+++..++|++...-.-+..|-..
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45778888888888888888888888888888876655544444333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.45  E-value=0.1  Score=48.43  Aligned_cols=52  Identities=33%  Similarity=0.387  Sum_probs=47.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~-d~~~~~wi~k~~~~l~~~   52 (306)
                      |.|||||||-|...-=+-.+|..+|+++.+++|. -+.+.+.+.-++..+++.
T Consensus       263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek  315 (329)
T KOG0545|consen  263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK  315 (329)
T ss_pred             hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999997 567889999998888876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=93.29  E-value=0.12  Score=41.68  Aligned_cols=43  Identities=35%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      .+++++|.+|+.+++|..|...|+.+..++|.+..+-..+..|
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            3445555555555555555555555555555544444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.20  E-value=0.033  Score=41.97  Aligned_cols=48  Identities=21%  Similarity=0.373  Sum_probs=38.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ..+|++|.+||.+++|+.|...|++ .++++....+...+.+|-.+|.+
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            5688899999999999999999999 77888776666677777665554

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=93.00  E-value=0.46  Score=36.94  Aligned_cols=65  Identities=18%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC------CCce-----EEEcccccccccCCCceEEEeCC-EEEE
Q 021870          114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEEA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI  178 (306)
Q Consensus       114 ~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~------~~~~-----y~~~l~L~~~I~pe~s~~kv~~~-KIEI  178 (306)
                      ++.++|++.++|+.+++|.|.+..+.|+|+....      +...     |.-.+.|-..|+++..+-+.... .|.|
T Consensus         7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i   83 (87)
T cd06482           7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI   83 (87)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence            5678999999999999999999999999997531      1112     34467888889999887777666 5554

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.79  E-value=0.16  Score=45.15  Aligned_cols=45  Identities=11%  Similarity=0.136  Sum_probs=39.6

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      ++.+++++|.+|..+++|+.|..+|++|..++|++..+-.-+..|
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999988776665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=92.79  E-value=0.15  Score=47.94  Aligned_cols=41  Identities=22%  Similarity=0.107  Sum_probs=25.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI   42 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi   42 (306)
                      +.+|+.+|++++.+++|++|+.+|+++.+++|+|+....|.
T Consensus       132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189        132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34566666666666666666666666666666665434443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=92.76  E-value=0.26  Score=34.73  Aligned_cols=45  Identities=20%  Similarity=0.202  Sum_probs=33.0

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      +++.+|.+++..++|+.|...|+.+.++.|.+..+-.++..|-..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK   46 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            678888888888888888888888888888776544444444333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.73  E-value=0.19  Score=50.27  Aligned_cols=36  Identities=11%  Similarity=0.102  Sum_probs=33.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.+|+-+|++||++++|++|+.+|++|.+++|++..
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae  110 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE  110 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence            578999999999999999999999999999999863

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.58  E-value=0.079  Score=38.99  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASL   31 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~   31 (306)
                      +.+++..|.+|+.+++|+.|+.+|++|.++
T Consensus        46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   46 ANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            578999999999999999999999999864

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.31  E-value=0.16  Score=50.06  Aligned_cols=50  Identities=24%  Similarity=0.349  Sum_probs=44.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      -|||+|+|.|+..|++|++|..+|++|.++.-+ ..+.+-+.+++..|+..
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS  370 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999876 77888888888888864

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.24  E-value=0.11  Score=34.17  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=28.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASL   31 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~   31 (306)
                      |.+|.|.|-+....++|..|..+|++|.++
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            578999999999999999999999999865

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.10  E-value=0.11  Score=38.26  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASL   31 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~   31 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|++|..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999976

...

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=92.05  E-value=1.1  Score=34.37  Aligned_cols=67  Identities=7%  Similarity=-0.017  Sum_probs=49.5

Q ss_pred             CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc-----eEEEcccccccccCCCceEEE-eCCEEEEE
Q 021870          113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  179 (306)
Q Consensus       113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~-----~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~  179 (306)
                      +++...|.+.++|+.++++.|.+..+.|+|+....   ...     .|.=.+.|-..|+++..+-+. ...-+.|.
T Consensus         5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            46678899999999999999999999999997531   111     244456788889888777666 34555443

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.05  E-value=0.22  Score=48.25  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|..++|.+...-..+..+-..+
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999998877655555444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.05  E-value=0.17  Score=45.85  Aligned_cols=50  Identities=30%  Similarity=0.299  Sum_probs=44.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +|+.||+-+|-++.+|+.|+.+|++-++++|.-.....-|.++..+|...
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er  218 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER  218 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence            78999999999999999999999999999998777777777777777665

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.59  E-value=0.16  Score=51.16  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      |+..||-||..+|-|++|+.|..+|++|.+|+|..  +--.|++|=...
T Consensus       393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALY  439 (606)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHH
Confidence            56789999999999999999999999999999964  555666664433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.31  E-value=0.44  Score=33.43  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      .+++.+|.+|+.+++|+.|...|+.+..+.|.+..+-..+..+
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            4788999999999999999999999999999887444333333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=91.15  E-value=0.33  Score=41.95  Aligned_cols=51  Identities=14%  Similarity=0.175  Sum_probs=43.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +..||-.|.+|-.+++|+.|..+|.+|..++|+|+....-...|--.+.+.
T Consensus        69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence            456788899999999999999999999999999999888888887766554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.95  E-value=0.097  Score=33.19  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             ChhhhhhhhhhhhccccHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAK   22 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~   22 (306)
                      ++.||+.+|.+|+.+|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            5789999999999999999996

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=89.98  E-value=0.2  Score=37.64  Aligned_cols=26  Identities=38%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKG   28 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a   28 (306)
                      .++|-.|.||+.|++|++|+..|+++
T Consensus        59 ~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   59 DIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            45677799999999999999999875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.97  E-value=0.26  Score=31.33  Aligned_cols=30  Identities=27%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASL   31 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~   31 (306)
                      +.++...|++|+.+++|++|+..++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467888999999999999999999998754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=89.71  E-value=0.31  Score=37.74  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=23.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      .++|.+|.+++..++|+.|...|+.+..+.|+.
T Consensus        40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795        40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            467777777777777777777777777776664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.67  E-value=0.58  Score=39.68  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.|=..++||.+|+|+.|+.++....+.+|+......-...++.++.+.
T Consensus        73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itke  121 (149)
T KOG3364|consen   73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKE  121 (149)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Confidence            5667889999999999999999999999999988888888888888776

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=89.31  E-value=0.68  Score=40.00  Aligned_cols=52  Identities=17%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++.+||-.|+|++.+++.+.|+.+|+.+..+.-..+....-.++.+..|+..
T Consensus       102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        102 APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999998755555555566666666553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=88.79  E-value=0.7  Score=35.71  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~---~~~~wi~k~~~~l   49 (306)
                      ++++|..|..++..++|+.|...|+.+....|++.   ....++..+-...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   52 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ   52 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh
Confidence            57899999999999999999999999999988763   3444455554433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=88.20  E-value=0.75  Score=39.29  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=20.1

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +|+.+|.+|+++++|+.|..+|++|..+.|.+..
T Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            4556666666666666666666666666555433

>PRK11189 lipoprotein NlpI; Provisional

Probab=88.05  E-value=0.7  Score=43.35  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=20.1

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+|+.+|.+|..+++|+.|..+|+++.+++|++.
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4555566666666666666666666666665543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.99  E-value=0.54  Score=45.75  Aligned_cols=51  Identities=22%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .|||-|||.|-+.|+..++|+.+++.+..|.|..-.|..-.+.+...++..
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~  215 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK  215 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh
Confidence            379999999999999999999999999999999877777777776655554

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=87.70  E-value=4.2  Score=31.87  Aligned_cols=65  Identities=15%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             CeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C---ceEEEcccccccccCCCceEEEe-CCEEEEE
Q 021870          115 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  179 (306)
Q Consensus       115 ~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~---~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~  179 (306)
                      +.-.|.|-+.+..++++.|.+.++.|.|+.....     |   ..|.-.+.|-..|+++..+-.+. ...+.|.
T Consensus        15 ~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie   88 (91)
T cd06480          15 EPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE   88 (91)
T ss_pred             CcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence            3455889999999999999999999999875321     1   13555678989999998877777 4555554

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.16  E-value=0.65  Score=48.04  Aligned_cols=50  Identities=20%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .|+|=.|+.|++.++|+.|..+|++|.+++|....|..-+-....+++..
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence            47888999999999999999999999999999999887777777766664

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=86.61  E-value=4.7  Score=35.47  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             eeeecCCC-eEEEEEEecCCCCCc-cEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          108 HEFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       108 ~dWyQt~~-~V~ItI~~k~v~~e~-v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      .+=.+.++ .++|.--++||..++ +.|.+..+...|.+...  ..|.-.+.|-.++ ++..+..+...-+||+|.+.+.
T Consensus        94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--~~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~  170 (177)
T PF05455_consen   94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--EKYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE  170 (177)
T ss_pred             eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--CceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence            44455555 688888899998777 88888866666665432  2466678888774 6777888999999999998653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=86.59  E-value=0.85  Score=32.25  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=34.0

Q ss_pred             hhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870           12 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus        12 ~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ++..|+|+.|...|+++...+|++..+...+..|-.+...
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~   40 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ   40 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999998888888665544

...

>PRK15331 chaperone protein SicA; Provisional

Probab=86.49  E-value=1.3  Score=38.61  Aligned_cols=48  Identities=8%  Similarity=0.059  Sum_probs=37.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ..+|+.|.||+.+++.+.|+.+|+.+.+ .|.+..|..+-...=..|..
T Consensus       106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999998 46766666655554444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=86.01  E-value=0.56  Score=40.10  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +.+||++|..|+.+++|++|..+|+++..+.++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   68 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDP   68 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence            5689999999999999999999999999887754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=85.00  E-value=1.2  Score=46.03  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=25.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++.
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            45677777777777777777777777777777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.36  E-value=1.2  Score=41.45  Aligned_cols=36  Identities=8%  Similarity=0.023  Sum_probs=30.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.|+|..|.+||.+++|+.|..+|+...+..|+++.
T Consensus       180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            358999999999999999999999999988886543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=84.35  E-value=1.7  Score=31.14  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=36.1

Q ss_pred             hhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            9 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         9 Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ..+|++.++|+.|+.+++++..++|.+..+-.-...|...+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~   45 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY   45 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH
Confidence            45789999999999999999999999887766666666665553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=83.24  E-value=1.8  Score=36.57  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=27.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI   42 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi   42 (306)
                      +.+++..|.+|+..++|+.|...|+++.+.+|.+...-..+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l   71 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL   71 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            35667777777777777777777777777776655443333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=83.18  E-value=1.5  Score=44.82  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=21.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.+|+.+|.+|+.+|+|++|...|+++.+++|.+..
T Consensus       372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            345566666666666666666666666666665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=82.96  E-value=1.8  Score=36.72  Aligned_cols=44  Identities=23%  Similarity=0.235  Sum_probs=36.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|...|+++.++.|.+......+..+
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999876544444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=82.75  E-value=2.3  Score=37.72  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=38.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF-TNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~-~~wi~k~~~~l~   50 (306)
                      +.++|.+|.+|+..++|+.|...|+.+....|.++.. ..|...+...+.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~   82 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK   82 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999987643 345555544443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=82.75  E-value=1.1  Score=39.83  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      .++|++|.+|+.+++|+.|...|+++.+..|+++.+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            588999999999999999999999999999987764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=82.30  E-value=1.5  Score=46.92  Aligned_cols=51  Identities=24%  Similarity=0.280  Sum_probs=42.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +-.|+|.|.||..|++|+.|+.+|+++..++|.+-....-+.-+...+...
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~  499 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH  499 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Confidence            457999999999999999999999999999998877766666665555443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=81.28  E-value=1.6  Score=28.15  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=25.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHH--HhhccCCCC
Q 021870            3 KAYWRKATACMKLEEYETAKVALE--KGASLAPGD   35 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~--~a~~~~~~d   35 (306)
                      +..|-.|-.+|..|+|++|...|+  -+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            346677899999999999999955  777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=81.26  E-value=1.8  Score=44.23  Aligned_cols=39  Identities=15%  Similarity=0.064  Sum_probs=30.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN   40 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~   40 (306)
                      +.+|+.+|.+|...|++++|...|++|..++|.++++--
T Consensus       453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~  491 (517)
T PRK10153        453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW  491 (517)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence            457888888888888888888888888888888876443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=80.99  E-value=1.5  Score=40.20  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=24.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      .|.|..|.+||++++|+.|...|++..++.|+++.+
T Consensus        70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            355666777777777777777777777777766544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=80.84  E-value=3.2  Score=35.08  Aligned_cols=32  Identities=9%  Similarity=-0.154  Sum_probs=17.6

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +|+..|++|+.+++|+.|+.+|+++..+.|..
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            45555555555555555555555555555443

>PRK12370 invasion protein regulator; Provisional

Probab=80.28  E-value=2.1  Score=43.78  Aligned_cols=45  Identities=11%  Similarity=0.003  Sum_probs=37.8

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      ++.+|+.+|.+++.+++|++|..+|++|.+++|++...-..+..+
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            356888999999999999999999999999999988765555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
2xcm_C	92	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		2e-37
2jki_S	90	Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng		5e-37
1rl1_A	114	Solution Structure Of Human Sgt1 Cs Domain Length =		6e-13

>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 92

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 81/91 (89%)
Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61
Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 195
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 90

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 80/88 (90%)
Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 1   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60
Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
            KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 61  DKCKYEVLSTKIEICLAKADIITWASLE 88

>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain Length = 114

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 56/90 (62%)
Query: 103 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI 162
           + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   I
Sbjct: 7   QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI 66
Query: 163 IPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
           IP +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 67  IPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	2e-34
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	2e-33
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	1e-29
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	1e-16
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	6e-12
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	3e-08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	1e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score =  119 bits (301), Expect = 2e-34
 Identities = 71/91 (78%), Positives = 81/91 (89%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61

Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 195
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score =  118 bits (296), Expect = 2e-33
 Identities = 34/108 (31%), Positives = 59/108 (54%)

Query: 100 APARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 159
              + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L 
Sbjct: 4   MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELL 63

Query: 160 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPS 207
             IIP +  ++VLSTK+EI+L K E ++W  LE       P++     
Sbjct: 64  HPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADV 111

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134

 Score =  108 bits (271), Expect = 1e-29
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 104 PKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------------GEE 150
              +++ Y+K P+ VVV V+ K I      V F EQ  ++                    
Sbjct: 18  AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHT 77

Query: 151 AYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
            + +Q +L   I P +C +   +++++I L K +  +W  LE
Sbjct: 78  TFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 73.6 bits (180), Expect = 1e-16
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 93  SNEAAMAAPARPKY-----RHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI 144
           S  + + AP    Y      + + Q  + V + +   G+   P +NV V F E+   + +
Sbjct: 3   SGSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLV 62

Query: 145 DVPGEEAYHFQ-PRLFGKIIPAKCRYEVLSTKVEIRLAKA-EPIQWSSLEFSK 195
                ++Y      L   I       +V +  V I   K  E  +W  L   +
Sbjct: 63  KNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVE 115

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 60.7 bits (147), Expect = 6e-12
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVS-IDVPGEEAYHFQPRLFGKIIPAKCRY 169
           Y + + V +    +   +K+V V+F +  L+ S +       +  +  LF  I P   ++
Sbjct: 9   YDRRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKH 66

Query: 170 EVLSTKVEIRLAKAEPIQ-WSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 228
           +     +   L K E  Q W  L   +                 +  + S     VD++ 
Sbjct: 67  KRTDRSILCCLRKGESGQSWPRLTKERA----------------KLNWLS-----VDFNN 105

Query: 229 LEAQVKKEEKEEKLDGDAALNKFFQ 253
                 K+ +++  +  +  ++F +
Sbjct: 106 W-----KDWEDDSDEDMSNFDRFSE 125

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 28/153 (18%)

Query: 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSV-SIDVPGEEAYHFQPRLFGKIIPAKCRY 169
            Q+ ++V +TV      AK+++V    Q L   S      E + F   L+GKI+      
Sbjct: 10  AQRSDKVYLTVALPD--AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYR-K 66

Query: 170 EVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKL 229
            V    +   + K E   W+ L  S+          P +               VDW+K 
Sbjct: 67  NVGLRNIIFSIQKEERSWWTRLLKSEE------KPAPYIK--------------VDWNKW 106

Query: 230 EAQVKKEEKEEKLDGDAALNKFFQEIYADADED 262
                 E++E   +  +     F    +++ +D
Sbjct: 107 ----CDEDEEVNSETASDDESAFVNQDSESSDD 135

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 48
            K Y RKA A   L  +E AK   E+G      + +    ++  E R
Sbjct: 72  GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAEE 52
            +AY RKATA + ++EY +A   L+   +      +      I +   + +++
Sbjct: 72  VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 3   KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52
           KA ++   A M     E AK  L K ASL P +    N  + C  ++ E 
Sbjct: 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 55
            K Y+R+A + M L ++  A    E    + P D       +EC + + ++  E
Sbjct: 81  IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52
            K   R+  A + + ++E A+   +K   L P +      +  C++RI  +
Sbjct: 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 46
            K Y RKA   + + E+  A+ A E    + P +      ++ C 
Sbjct: 81  IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51
           SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct: 80  SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAEETGELQKQ 59
           SKA+ R   A   + +Y+ AK A EKG       G       ++  + +I E     +  
Sbjct: 79  SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138

Query: 60  PLETGP 65
             +   
Sbjct: 139 ADDVDD 144

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 47
            K Y RKA A   +++Y  A    +K   L        +  + C  
Sbjct: 84  IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50
            KA +R++ A  KL   + A + L++  SL P +  F   ++      +
Sbjct: 99  VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 3   KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52
           K  +R+  A + + E+E+AK   EK   + P +      I  C+++  E 
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 101 PARPKYRHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 159
           P+  KY   + Q+  E+ +         +  + +    + + V               L 
Sbjct: 2   PSEAKYT--WDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ----GEIVIDGELL 55

Query: 160 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVS 209
            ++  +   + +    V++ + K     W SL     +V  Q++     +
Sbjct: 56  HEVDVSSLWWVINGDVVDVNVTKKRNEWWDSLLVGSESVDVQKLAENKHA 105

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 3   KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52
           KA +R+  A  +L + ++A+    K    AP D      ++   E+    
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQ 59
           +KA +R+A     L+EY+ A   L+K   +AP D      + + +++I  +  + +K 
Sbjct: 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK-DKEKA 363

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 3   KAYWRKATACMKLEEYETAKVALEKGASLAPGD-SRFTNLIKECEERIAEE 52
           KA +R+A A +   + + A+  L+      P   S     +K   ER AE+
Sbjct: 98  KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-----RFTNLIKECEERIAEE 52
            KA++      +++E Y+ A   L++  SLA            + ++  +++    
Sbjct: 77  VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52
           +KAY R   +  K E+Y+ A     K  +            ++ E+ + E+
Sbjct: 79  AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC-QQAEKILKEQ 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 55/353 (15%), Positives = 97/353 (27%), Gaps = 112/353 (31%)

Query: 38  FTNLIKECEERIAEETGELQKQ----PLETGPTNVV-------------------STNNV 74
            +   +E +  I  +            L +    +V                    T   
Sbjct: 46  LSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 75  QPATNISSTEDVETVMDVSNEAAMAAPARPKY---RHEFYQKPEEVVVTVFAKGIPAKNV 131
           QP+       +    +   N          KY   R + Y K  + ++ +     PAKNV
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN------QVFAKYNVSRLQPYLKLRQALLEL----RPAKNV 153

Query: 132 TVD----FGEQIL--SVSIDVPGEEAYHFQPRLFGKI----IPAKCRYEVLSTKVEIRLA 181
            +D     G+  +   V +       Y  Q ++  KI    +      E +   ++  L 
Sbjct: 154 LIDGVLGSGKTWVALDVCLS------YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 182 KAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPR-----PTYPSS-------------KP-- 221
           + +P   S  + S    +  R++  S+    R       Y +                  
Sbjct: 208 QIDPNWTSRSDHSSN--IKLRIH--SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 222 --------TRVDW---DKLEAQVKK----EEKEEKLDGDAALNKFFQEIYADADEDTRRA 266
                   TR      D L A        +     L  D   +   + +     +  R  
Sbjct: 264 LSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 267 MKKS------FVES--NGTVLSTNWKEVGSKK----VEGS----PPDGMEMKK 303
           +  +        ES  +G     NWK V   K    +E S     P   E +K
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.89
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.88
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.87
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.86
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.85
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.84
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.84
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.78
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.74
2jtt_C	35	Calcyclin-binding protein; S100A6, SIAH-1 interact	99.73
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.65
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.65
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.61
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.08
4fei_A	102	Heat shock protein-related protein; stress respons	97.94
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.9
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.8
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.76
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.76
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.61
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.56
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.48
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.45
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.18
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.97
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	96.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.91
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.9
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.61
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.52
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.39
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.34
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.21
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.99
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.97
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.96
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.94
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.91
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.88
3k9i_A	117	BH0479 protein; putative protein binding protein,	95.87
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.2
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.92
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.64
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	94.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.4
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	94.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	93.94
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	93.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.51
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	93.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	93.26
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	93.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	93.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	93.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	93.01
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	92.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.84
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	92.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	92.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.24
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	91.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	91.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	91.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	91.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	91.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	91.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	91.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.3
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	90.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	90.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	90.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	90.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	90.18
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	90.13
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	90.08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	89.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	89.72
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	89.54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	89.34
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	89.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	89.01
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	89.0
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	88.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	88.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	88.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	88.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	88.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	88.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	88.25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	88.11
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	88.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	87.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	87.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	87.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	87.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	87.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	87.57
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	87.12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	86.98
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	86.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	86.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	86.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	86.5
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	86.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	86.13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	85.97
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	85.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	85.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	84.72
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	84.71
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	84.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	84.45
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	83.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	82.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	81.93
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	81.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	81.35
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	81.22
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	80.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	80.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	80.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	80.16

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.89  E-value=6e-24  Score=180.36  Aligned_cols=105  Identities=25%  Similarity=0.356  Sum_probs=91.2

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEee-ccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCC
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  184 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~-~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~  184 (306)
                      ++|+||||.+.|+|+|+++++  ++++|+|+ +++|+|++...+|..|.|.|+||++|+|+ |+|+|++++|+|+|+|++
T Consensus         5 P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K~e   81 (150)
T 2kmw_A            5 PEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQKEE   81 (150)
T ss_dssp             CCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEECC
T ss_pred             CcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEECC
Confidence            479999999999999999987  68999999 78999998756678899999999999999 999999999999999999


Q ss_pred             CCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 021870          185 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV  233 (306)
Q Consensus       185 ~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~  233 (306)
                      +.+|++|++...               ..+.|.     ++|||+|..|.
T Consensus        82 ~~~W~rL~k~~~---------------K~~~~l-----k~Dwdkw~ded  110 (150)
T 2kmw_A           82 RSWWTRLLKSEE---------------KPAPYI-----KVDWNKWCDED  110 (150)
T ss_dssp             SSCCSCSBSCCS---------------SCCTTE-----EECSSSSCCSS
T ss_pred             CCcCcccccCCc---------------ccCccc-----cccchhcCCch
Confidence            999999997532               113332     67999998653

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.88  E-value=1.7e-22  Score=156.64  Aligned_cols=91  Identities=77%  Similarity=1.247  Sum_probs=85.2

Q ss_pred             CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021870          104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  183 (306)
Q Consensus       104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~  183 (306)
                      +++||+||||.+.|+|+|+++|+.++++.|+|++++|+|++...++..|.++++||++|+|++|++++.+++|+|+|+|+
T Consensus         1 ~~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~   80 (92)
T 2xcm_C            1 AKYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA   80 (92)
T ss_dssp             CCSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred             CCccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence            36799999999999999999999999999999999999998766677899999999999999999999999999999999


Q ss_pred             CCCCCCceeec
Q 021870          184 EPIQWSSLEFS  194 (306)
Q Consensus       184 ~~~~W~~L~~~  194 (306)
                      ++++|++|++.
T Consensus        81 ~~~~W~~L~~~   91 (92)
T 2xcm_C           81 DIITWASLEHG   91 (92)
T ss_dssp             SSCCCSCSBTT
T ss_pred             CCCcchhcccC
Confidence            98999999853

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.87  E-value=6.2e-23  Score=168.93  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      +|+||||.+.|+|+|+++++  +++.|+|++++|+|++.. .+|..|.+.++||++|+|++|+|+|.+++|+|+|+|+++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (125)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECCC
Confidence            79999999999999999986  799999999999999875 467789999999999999999999999999999999986


Q ss_pred             -CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 021870          186 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  232 (306)
Q Consensus       186 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e  232 (306)
                       .+|++|++...                ++.+     -++|||||.+|
T Consensus        83 ~~~W~rL~~~~~----------------K~~~-----lk~D~dkw~de  109 (125)
T 1ejf_A           83 GQSWPRLTKERA----------------KLNW-----LSVDFNNWKDW  109 (125)
T ss_dssp             TCCCSSSBSSCC----------------CCTT-----EEECTTTCCCC
T ss_pred             CCCCCceecCCC----------------cccc-----ccCChHHhCCc
Confidence             59999997632                1222     26799999864

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.86  E-value=5.3e-22  Score=165.33  Aligned_cols=92  Identities=26%  Similarity=0.481  Sum_probs=85.6

Q ss_pred             CCCCeeeecC-CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCc------------eEEEcccccccccCCCceEE
Q 021870          104 PKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE------------AYHFQPRLFGKIIPAKCRYE  170 (306)
Q Consensus       104 ~k~r~dWyQt-~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~------------~y~~~l~L~~~I~pe~s~~k  170 (306)
                      ..+||+|||| .+.|+|+|+++++.++++.|+|++++|+|.+...++.            .|.|+++||++|+|++|+|+
T Consensus        18 ~~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~   97 (134)
T 1wh0_A           18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC   97 (134)
T ss_dssp             SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred             cCCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEE
Confidence            3689999999 9999999999999999999999999999999766554            79999999999999999999


Q ss_pred             EeCCEEEEEEEeCCCCCCCceeecc
Q 021870          171 VLSTKVEIRLAKAEPIQWSSLEFSK  195 (306)
Q Consensus       171 v~~~KIEI~L~K~~~~~W~~L~~~~  195 (306)
                      |.+++|+|+|+|+++.+|++|+...
T Consensus        98 v~~~kIeI~L~K~e~~~W~~L~~~~  122 (134)
T 1wh0_A           98 FTASRIDICLRKRQSQRWGGLEAPA  122 (134)
T ss_dssp             ECSSEEEEEEEESSSCCCSCSBCCC
T ss_pred             EeCCEEEEEEEECCCCccccccccC
Confidence            9999999999999989999999764

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.85  E-value=2.5e-21  Score=156.27  Aligned_cols=95  Identities=35%  Similarity=0.652  Sum_probs=86.8

Q ss_pred             CCCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021870          103 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  182 (306)
Q Consensus       103 ~~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K  182 (306)
                      .+.+||+||||.+.|+|+|+++|+.++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus         7 ~~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K   86 (114)
T 1rl1_A            7 QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK   86 (114)
T ss_dssp             -CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             CCCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEc
Confidence            35789999999999999999999999999999999999999886667889999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCc
Q 021870          183 AEPIQWSSLEFSKGA  197 (306)
Q Consensus       183 ~~~~~W~~L~~~~~~  197 (306)
                      +++.+|++|++.+..
T Consensus        87 ~~~~~W~~L~~~~~~  101 (114)
T 1rl1_A           87 PEAVRWEKLEGQGDV  101 (114)
T ss_dssp             SSCCCCSSSBTTC--
T ss_pred             CCCCcCccccccCCc
Confidence            998999999976543

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=156.05  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=84.7

Q ss_pred             CCCeeeecCCCeEEEEEEecCC---CCCccEEEeeccEEEEEEEcCCCceEEEcc-cccccccCCCceEEEeCCEEEEEE
Q 021870          105 KYRHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRL  180 (306)
Q Consensus       105 k~r~dWyQt~~~V~ItI~~k~v---~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l-~L~~~I~pe~s~~kv~~~KIEI~L  180 (306)
                      ..||+||||.+.|+|+|+++++   +++++.|+|++++|+|.+...++..|.|++ +||++|+|++|+|+|.+++|+|+|
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L   99 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILC   99 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEE
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEE
Confidence            4499999999999999999998   789999999999999999776778999999 599999999999999999999999


Q ss_pred             EeCCCC-CCCceeeccC
Q 021870          181 AKAEPI-QWSSLEFSKG  196 (306)
Q Consensus       181 ~K~~~~-~W~~L~~~~~  196 (306)
                      +|+++. +|++|+..+.
T Consensus       100 ~K~~~~~~W~~L~~~~~  116 (127)
T 1x5m_A          100 RKKVENTRWDYLTQVEK  116 (127)
T ss_dssp             ECSSSSCCCSSSBHHHH
T ss_pred             EECCCCCCCCccccccc
Confidence            999875 9999997643

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.8e-22  Score=167.03  Aligned_cols=104  Identities=19%  Similarity=0.292  Sum_probs=84.2

Q ss_pred             CCeeeecCCCe-------EEEEEEecCCCCCccEEEeeccEEEEEEEcCC------CceEEEcccccccccCCCceEEEe
Q 021870          106 YRHEFYQKPEE-------VVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG------EEAYHFQPRLFGKIIPAKCRYEVL  172 (306)
Q Consensus       106 ~r~dWyQt~~~-------V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~------~~~y~~~l~L~~~I~pe~s~~kv~  172 (306)
                      ++|.||||.+.       |+|+|+++++  .++.|+|++++|+|++...+      +..|.+.|+||++|+|++|++++.
T Consensus         7 p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~   84 (134)
T 2cg9_X            7 PQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA   84 (134)
T ss_dssp             ----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC
T ss_pred             CCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC
Confidence            47999999988       9999999987  58999999999999876543      468999999999999999999999


Q ss_pred             CCE-EEEEEEeCC--CCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 021870          173 STK-VEIRLAKAE--PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  232 (306)
Q Consensus       173 ~~K-IEI~L~K~~--~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e  232 (306)
                      +++ |+|+|+|++  ..+|++|++...                ++.|     -++|||||.+|
T Consensus        85 ~~~~vei~L~K~~~~~~~W~rL~k~~~----------------K~~~-----lk~D~dkw~dE  126 (134)
T 2cg9_X           85 NGQHYFLKLYKKDLESEYWPRLTKEKV----------------KYPY-----IKTDFDKWVDA  126 (134)
T ss_dssp             CC--CEEEEEECSSSSCCCSCSSSSCC----------------CCSS-----EEECTTTCCCS
T ss_pred             CCEEEEEEEEECCCCCCCCCceecCCC----------------ccCc-----ccCCchhcCCc
Confidence            999 999999998  479999997632                1222     26799999864

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.78  E-value=3.6e-19  Score=147.54  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CCeeeecCCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCC
Q 021870          106 YRHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  184 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~  184 (306)
                      .+|.|+||.+.|+|+|++ ++++.+++.|+|++++|+|.+.   |.+ .+.++||++|+|++|+|++.+++|+|+|.|+.
T Consensus         5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~   80 (131)
T 2o30_A            5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---GEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKKR   80 (131)
T ss_dssp             CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---TEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred             CcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---CEe-eEccccccccccccCEEEEeCCEEEEEEEECC
Confidence            479999999999999998 6888999999999999999874   445 78899999999999999999999999999996


Q ss_pred             CCCCCceeecc
Q 021870          185 PIQWSSLEFSK  195 (306)
Q Consensus       185 ~~~W~~L~~~~  195 (306)
                      ..+|++|.+.+
T Consensus        81 ~~~W~~L~~~~   91 (131)
T 2o30_A           81 NEWWDSLLVGS   91 (131)
T ss_dssp             CCCCSCSBC--
T ss_pred             CCCCccccCCC
Confidence            68999998653

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.74  E-value=7.5e-18  Score=138.27  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             CCeeeecCCCeEEEEEEec-CC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCE-EEEEEEe
Q 021870          106 YRHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK  182 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k-~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~K-IEI~L~K  182 (306)
                      .+|.|+||.+.|+|+|.++ ++ +.+++.|+|++++|+|.+...++..|.+.++||++|+|++|+|++.+++ |+|+|+|
T Consensus        20 ~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~K   99 (124)
T 1wgv_A           20 ENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSK   99 (124)
T ss_dssp             SSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECB
T ss_pred             CcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEEE
Confidence            4899999999999999986 66 7899999999999999987555667889999999999999999999887 9999999


Q ss_pred             CCCCCCCceeeccC
Q 021870          183 AEPIQWSSLEFSKG  196 (306)
Q Consensus       183 ~~~~~W~~L~~~~~  196 (306)
                      ++..+|++|.+.+.
T Consensus       100 ~~~~~W~~L~~~~~  113 (124)
T 1wgv_A          100 VGEYWWNAILEGEE  113 (124)
T ss_dssp             SSSCCCSCSBTTSC
T ss_pred             CCCCCCcCcccCCC
Confidence            98899999997654

>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}

Probab=99.73  E-value=4.6e-19  Score=112.92  Aligned_cols=33  Identities=33%  Similarity=0.668  Sum_probs=29.9

Q ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcC
Q 021870          243 DGDAALNKFFQEIYADADEDTRRAMKKSFVESN  275 (306)
Q Consensus       243 eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~  275 (306)
                      +|+++||+|||+||++|||||||||||||+|||
T Consensus         3 dp~~~l~~~fk~iY~~gddd~kram~KS~~eS~   35 (35)
T 2jtt_C            3 GSSEGLMNVLKKIYEDGDDDMKRTINKAWVESR   35 (35)
T ss_dssp             --CCSHHHHHHHHHTTCCSSHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence            456789999999999999999999999999997

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.65  E-value=3.8e-16  Score=133.24  Aligned_cols=86  Identities=23%  Similarity=0.367  Sum_probs=76.7

Q ss_pred             CCCeeeecCCCeEEEEEEec-CCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCE-EEEEEEe
Q 021870          105 KYRHEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK  182 (306)
Q Consensus       105 k~r~dWyQt~~~V~ItI~~k-~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~K-IEI~L~K  182 (306)
                      ..+|.|+||.+.|+|+|.++ ++..++|.|+|++++|+|.+.   |.. .+.++||++|+|++|+|+|.+++ |+|+|.|
T Consensus        13 ~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---g~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K   88 (157)
T 2rh0_A           13 TPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---GRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTK   88 (157)
T ss_dssp             CSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---TEE-EEEEEBSSCBCGGGCEEEEECCCEEEEEEEB
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---CEE-EEeeccccccCccccEEEEcCCcEEEEEEEE
Confidence            45899999999999999985 788899999999999999875   334 58889999999999999999987 9999999


Q ss_pred             CCC---CCCCceeec
Q 021870          183 AEP---IQWSSLEFS  194 (306)
Q Consensus       183 ~~~---~~W~~L~~~  194 (306)
                      ++.   .+|++|.+.
T Consensus        89 ~~~~~~~~W~~L~k~  103 (157)
T 2rh0_A           89 TKRDAANCWTSLLES  103 (157)
T ss_dssp             SSCSTTCCCSEEETT
T ss_pred             cCCCcCCcChhhhcC
Confidence            885   799999864

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.65  E-value=8.4e-16  Score=127.10  Aligned_cols=88  Identities=18%  Similarity=0.242  Sum_probs=78.4

Q ss_pred             CCeeeecCCCeEEEEEEec-C--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEE
Q 021870          106 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLA  181 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k-~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~  181 (306)
                      .+|.|+||.+.|+|+|.++ +  ++.+++.|+|++++|+|.+.   |..+.+.++||++|+|++|+|++.++ .|+|+|+
T Consensus         8 ~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~   84 (131)
T 1wfi_A            8 PNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE   84 (131)
T ss_dssp             CSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEE
T ss_pred             CcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC---CceEEEecccccccccccCEEEEcCCCEEEEEEE
Confidence            3799999999999999987 5  78899999999999999874   34577899999999999999999997 6999999


Q ss_pred             eCCC-CCCCceeeccC
Q 021870          182 KAEP-IQWSSLEFSKG  196 (306)
Q Consensus       182 K~~~-~~W~~L~~~~~  196 (306)
                      |++. .+|++|.+.+.
T Consensus        85 K~~~~~~W~~L~~~~~  100 (131)
T 1wfi_A           85 KINKMEWWNRLVTSDP  100 (131)
T ss_dssp             BSSSCCCCSCSBSSCC
T ss_pred             ECCCCCCChhhhcCCC
Confidence            9987 59999997643

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.61  E-value=2.1e-15  Score=123.23  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CCeeeecCCCeEEEEEEec-C--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEE
Q 021870          106 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLA  181 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k-~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~  181 (306)
                      .+|.|+||.+.|+|+|.++ +  ++.+++.|+|.+++|+|.++   |..|.+.++||++|+|++|+|++.++ +|+|+|.
T Consensus        17 ~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~   93 (121)
T 3qor_A           17 PNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIADGAVVTVHLE   93 (121)
T ss_dssp             SSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEET---TSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEE
T ss_pred             CCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEc---CcceEEeccccccccccccEEEEcCCCEEEEEEE
Confidence            3799999999999999986 4  78899999999999998875   34678899999999999999999986 9999999


Q ss_pred             eCCC-CCCCceeeccCc
Q 021870          182 KAEP-IQWSSLEFSKGA  197 (306)
Q Consensus       182 K~~~-~~W~~L~~~~~~  197 (306)
                      |.+. .+|++|...+..
T Consensus        94 K~~~~~~W~~L~~~~~~  110 (121)
T 3qor_A           94 KINKMEWWSRLVSSDPE  110 (121)
T ss_dssp             BSSSSCCCSCSBTTSCC
T ss_pred             ECCCCCCChhhhcCCCC
Confidence            9977 699999876543

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.08  E-value=3.7e-05  Score=59.58  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=67.5

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C----------ceEEEcccccccccCCCceEE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRYE  170 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~----------~~y~~~l~L~~~I~pe~s~~k  170 (306)
                      ++++++++++.+.|.+.++|+.++++.|.+.++.|.|+.....     +          ..|.-.+.|-..|+++..+.+
T Consensus         5 P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~   84 (100)
T 3gla_A            5 PRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAA   84 (100)
T ss_dssp             CCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEE
T ss_pred             CcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEE
Confidence            3689999999999999999999999999999999999875321     1          136667889999999999999


Q ss_pred             EeCCEEEEEEEeCC
Q 021870          171 VLSTKVEIRLAKAE  184 (306)
Q Consensus       171 v~~~KIEI~L~K~~  184 (306)
                      ...+-++|+|.|..
T Consensus        85 ~~~GvL~I~~pK~~   98 (100)
T 3gla_A           85 GRNGVLEIRIPKRP   98 (100)
T ss_dssp             EETTEEEEEEEBC-
T ss_pred             EeCCEEEEEEecCC
Confidence            99999999999975

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.94  E-value=0.0001  Score=57.53  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC----------ceEEEcccccccccCCCceEEEeCCE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE----------EAYHFQPRLFGKIIPAKCRYEVLSTK  175 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~----------~~y~~~l~L~~~I~pe~s~~kv~~~K  175 (306)
                      +.++|+++++.+.|.+.++|+.++++.|.+.++.|.|+......          ..|.-.+.|-..|+++..+.++...-
T Consensus         7 P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~Gv   86 (102)
T 4fei_A            7 PAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGV   86 (102)
T ss_dssp             CCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTE
T ss_pred             CcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCE
Confidence            36899999999999999999999999999999999998653211          14666788999999999999999999


Q ss_pred             EEEEEEeCCC
Q 021870          176 VEIRLAKAEP  185 (306)
Q Consensus       176 IEI~L~K~~~  185 (306)
                      ++|+|.|..+
T Consensus        87 L~I~lpK~~~   96 (102)
T 4fei_A           87 LTVRFEKLRP   96 (102)
T ss_dssp             EEEEEEBSSC
T ss_pred             EEEEEEccCc
Confidence            9999999754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.90  E-value=8.4e-06  Score=66.43  Aligned_cols=52  Identities=25%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc-hHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~-~~~~wi~k~~~~l~~~   52 (306)
                      ++++|||+|.+|+.+++|+.|+.+|++|.+++|++. .+...+..|..++...
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998 8999999999999876

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.80  E-value=0.00015  Score=58.50  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEeec-cEEEEEEEcCCC---c--------eEEEcccccccccCCCc-eEEEe
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGE-QILSVSIDVPGE---E--------AYHFQPRLFGKIIPAKC-RYEVL  172 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~-~~l~v~i~~~~~---~--------~y~~~l~L~~~I~pe~s-~~kv~  172 (306)
                      +.++++++++.+.|.+.++|+.++++.|.+.+ +.|.|+......   .        .|.-.+.|-..|+++.. +.+..
T Consensus        25 P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~  104 (123)
T 3aab_A           25 PPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYE  104 (123)
T ss_dssp             SCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEE
T ss_pred             CcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEc
Confidence            36899999999999999999999999999999 999999864321   1        46667889999999998 88889


Q ss_pred             CCEEEEEEEeCCC
Q 021870          173 STKVEIRLAKAEP  185 (306)
Q Consensus       173 ~~KIEI~L~K~~~  185 (306)
                      .+-+.|+|.|...
T Consensus       105 ~GvL~I~lPK~~~  117 (123)
T 3aab_A          105 NGVLTIRIPIAGT  117 (123)
T ss_dssp             TTEEEEEEEGGGE
T ss_pred             CCEEEEEEEcCCC
Confidence            9999999998653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.76  E-value=4.5e-06  Score=70.89  Aligned_cols=49  Identities=16%  Similarity=0.005  Sum_probs=46.3

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ||||+|++|..|++|++|+.+|++|.+++|.|..+...+..++.+++.+
T Consensus       104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A          104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            3399999999999999999999999999999999999999999998876

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.76  E-value=3e-05  Score=63.82  Aligned_cols=83  Identities=16%  Similarity=0.311  Sum_probs=70.7

Q ss_pred             CCeeeecCCCeEEEEEEecCCC--CCccEEEeeccEEEEEEEcCCCceEEEcccccccc-cCCC--ceEEEeCCEEEEEE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI-IPAK--CRYEVLSTKVEIRL  180 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~--~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I-~pe~--s~~kv~~~KIEI~L  180 (306)
                      ++|.=.|++++|+|.|.++.+.  ..++.+.+.++.|.|++.     .|.|.|.|-|+| +.+.  ++|......+.|+|
T Consensus         4 P~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~-----PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtL   78 (134)
T 2k8q_A            4 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKV   78 (134)
T ss_dssp             SEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS-----SSCEEECCSSCEECCSSCEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC-----CeEEEecCCCeeecCCCcceeEeccCCEEEEEE
Confidence            3788899999999999999988  789999999998888753     799999999999 5554  46666778999999


Q ss_pred             EeCCC-CCCCceee
Q 021870          181 AKAEP-IQWSSLEF  193 (306)
Q Consensus       181 ~K~~~-~~W~~L~~  193 (306)
                      .|..+ .+++.|.-
T Consensus        79 pK~~~Ge~F~dLD~   92 (134)
T 2k8q_A           79 AKLNKNEYFEDLDL   92 (134)
T ss_dssp             EESSTTCCCSSTTC
T ss_pred             eCCCCCCCCCCccc
Confidence            99886 68999863

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00044  Score=55.19  Aligned_cols=82  Identities=17%  Similarity=0.331  Sum_probs=69.9

Q ss_pred             CCeeeecCCCeEEEEEEecCCC--CCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCC---ceEEEeCCEEEEEE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK---CRYEVLSTKVEIRL  180 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~--~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~---s~~kv~~~KIEI~L  180 (306)
                      ++|.=.|+++.|+|.|.++.+.  ..++.+.+.++.+.|.+.     +|.|.|.|-++|.-++   ++|.+....+.|+|
T Consensus        18 P~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~-----PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~l   92 (115)
T 3eud_A           18 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKV   92 (115)
T ss_dssp             CCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET-----TEEEEEECSSCEECSTTCEEEEETTTTEEEEEE
T ss_pred             CcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC-----CeEEEEecCcceecCCCcceEEeCCCcEEEEEE
Confidence            3788999999999999999876  678999999999988874     7999999999995433   47888889999999


Q ss_pred             EeCCC-CCCCcee
Q 021870          181 AKAEP-IQWSSLE  192 (306)
Q Consensus       181 ~K~~~-~~W~~L~  192 (306)
                      .|..+ +..+.|.
T Consensus        93 pK~~~GE~F~dLD  105 (115)
T 3eud_A           93 AKLNKNEYFEDLD  105 (115)
T ss_dssp             EESSTTCCCCCTT
T ss_pred             cCCcCCCcCCCcc
Confidence            99886 5677774

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.56  E-value=0.00044  Score=57.86  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEee-ccEEEEEEEcCC-----C----------ceEEEcccccccccCCCceE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRY  169 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~-~~~l~v~i~~~~-----~----------~~y~~~l~L~~~I~pe~s~~  169 (306)
                      ++++|+++++.+.|.+.++|+.+++|.|.+. ++.|.|+.....     +          ..|.-.+.|-..|+++..+.
T Consensus        44 p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A  123 (151)
T 1gme_A           44 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  123 (151)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEE
Confidence            4689999999999999999999999999994 679999874321     1          13566778999999999888


Q ss_pred             EEeCCEEEEEEEeCCC
Q 021870          170 EVLSTKVEIRLAKAEP  185 (306)
Q Consensus       170 kv~~~KIEI~L~K~~~  185 (306)
                      +....-++|+|.|...
T Consensus       124 ~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          124 GLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEETTEEEEEEECCCC
T ss_pred             EEECCEEEEEEEccCc
Confidence            8999999999999653

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.54  E-value=0.00042  Score=54.01  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             eeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEE-eCCEEEE
Q 021870          108 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  178 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI  178 (306)
                      .+++++++.+.|.+.++|+.++++.|.+.++.|.|+....   ++     ..|.-.+.|-..|+++..+-++ ...-+.|
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I   83 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI   83 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence            5899999999999999999999999999999999987532   11     2366678899999999999999 6889999


Q ss_pred             EEEeCC
Q 021870          179 RLAKAE  184 (306)
Q Consensus       179 ~L~K~~  184 (306)
                      +|.|..
T Consensus        84 ~lPK~~   89 (101)
T 2wj5_A           84 QATPAS   89 (101)
T ss_dssp             EECBCC
T ss_pred             EEECCC
Confidence            999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.48  E-value=8.5e-05  Score=58.90  Aligned_cols=44  Identities=25%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+++|.+|+.+++|++|+.+|+++.+++|++..+...+..|
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            56788888888888888888888888888888877776666655

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.45  E-value=0.00079  Score=56.73  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             eeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C-----------ceEEEcccccccccCCCceEEE
Q 021870          108 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E-----------EAYHFQPRLFGKIIPAKCRYEV  171 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~-----------~~y~~~l~L~~~I~pe~s~~kv  171 (306)
                      ++++++++.+.|.+.++|+.+++|.|.+.++.|.|+.....     +           ..|.-.+.|-..|+++..+.+.
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~  138 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF  138 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence            89999999999999999999999999999999999875322     1           1455667899999999988888


Q ss_pred             eCCEEEEEEEeCCC
Q 021870          172 LSTKVEIRLAKAEP  185 (306)
Q Consensus       172 ~~~KIEI~L~K~~~  185 (306)
                      ..+-++|+|.|.+.
T Consensus       139 ~nGvL~I~lpK~~~  152 (161)
T 4eld_A          139 ENGVLSVILPKAES  152 (161)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEcCCC
Confidence            99999999999653

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.30  E-value=0.0014  Score=51.54  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             eeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEE-eCCEEEE
Q 021870          108 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  178 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI  178 (306)
                      -+++++++.+.|.+.++|+.++++.|.+.++.|.|+....   ++     ..|.-.+.|-..|+++..+-.+ ...-+.|
T Consensus         5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I   84 (106)
T 3l1e_A            5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTF   84 (106)
T ss_dssp             EEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEE
Confidence            4789999999999999999999999999999999987421   11     2366678899999999999999 6889999


Q ss_pred             EEEeCCC
Q 021870          179 RLAKAEP  185 (306)
Q Consensus       179 ~L~K~~~  185 (306)
                      +|.|..+
T Consensus        85 ~~PK~~~   91 (106)
T 3l1e_A           85 SGPKIPS   91 (106)
T ss_dssp             EEEBCCC
T ss_pred             EEEccCc
Confidence            9999754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00017  Score=55.67  Aligned_cols=48  Identities=25%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccC------CCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLA------PGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~------~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+++|.+|+.+++|+.|+.+|+++.+++      |.+..+..++.+|..+|
T Consensus        72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            4566777777777777777777777777777      66666666666665543

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.12  E-value=0.0038  Score=46.93  Aligned_cols=73  Identities=7%  Similarity=0.096  Sum_probs=61.8

Q ss_pred             ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C---ceEEEcccccccccCCCceEEEe-CCEEEEEEE
Q 021870          111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLA  181 (306)
Q Consensus       111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~---~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~  181 (306)
                      .++++.+.|.+-++|+.+++|.|.+.++.|.|+.....     +   ..|.-.+.|-..|+++..+-++. ..-+.|+|-
T Consensus         3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            46788999999999999999999999999999875321     1   25777789999999999999998 889999998


Q ss_pred             eC
Q 021870          182 KA  183 (306)
Q Consensus       182 K~  183 (306)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.09  E-value=0.0007  Score=54.89  Aligned_cols=51  Identities=27%  Similarity=0.366  Sum_probs=47.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~--~~~wi~k~~~~l~~~   52 (306)
                      +.+|+++|.+|+.+++|+.|+.+|+++.+++|++..  +...+..+..++...
T Consensus        79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999888  888899999888886

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.97  E-value=0.00075  Score=56.46  Aligned_cols=52  Identities=31%  Similarity=0.355  Sum_probs=48.6

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++.+||++|.+|+.+++|+.|+.+|+++.+++|.+..+...+..|...+...
T Consensus       121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999988776

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=96.94  E-value=0.0022  Score=48.65  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             cCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEE-eCCEEEEEEEe
Q 021870          112 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  182 (306)
Q Consensus       112 Qt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L~K  182 (306)
                      ++++.+.|++.++|+.+++|.|.+.++.|.|+....   ++     ..|.-.+.|-..|+++..+.++ ...-+.|+|.|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            467789999999999999999999999999987531   11     1366678899999999988899 78899999988


Q ss_pred             CC
Q 021870          183 AE  184 (306)
Q Consensus       183 ~~  184 (306)
                      ..
T Consensus        83 ~~   84 (90)
T 2y1y_A           83 KQ   84 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.91  E-value=0.00081  Score=63.42  Aligned_cols=52  Identities=27%  Similarity=0.459  Sum_probs=48.4

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +++||||+|.+|+.+++|++|+.+|++|.+++|.+..+...+..+...+...
T Consensus       306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999998888765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.90  E-value=0.00086  Score=54.38  Aligned_cols=51  Identities=14%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+||.+|.+|+.+++|++|+.+|+++.+++|+++.+..+..++...|...
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            567888899999999999999999999998888888888888888888775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.83  E-value=0.001  Score=64.28  Aligned_cols=52  Identities=25%  Similarity=0.405  Sum_probs=43.1

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +++||||+|.+|+++++|+.|+.+|++|.+++|++..+...+..|...+...
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998888888887777653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.79  E-value=0.00093  Score=53.11  Aligned_cols=51  Identities=12%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+||.+|.+|+.+++|+.|+.+|+++.+++|.++....+..++...|+..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            346677777777777777777777777777777666666666666666553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.65  E-value=0.0015  Score=51.43  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      |.+|+.+|.+||..|+|+.|+.+|++|.+++|.+..+-..+..|-..+.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~   61 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM   61 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence            5678888888888888888888888888888888776666665554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.61  E-value=0.00079  Score=62.33  Aligned_cols=51  Identities=22%  Similarity=0.334  Sum_probs=28.2

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +++||||+|.+|+.+++|+.|+.+|++|.+++|++..+...+..|...+..
T Consensus       263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998888888887655544

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.61  E-value=0.0046  Score=53.00  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             eeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEE-eCCEEEE
Q 021870          108 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  178 (306)
Q Consensus       108 ~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI  178 (306)
                      .+++++++.+.|.+.++|+.+++|.|.+.++.|.|+....   ++     ..|.-.+.|-..|+++..+-++ ..+-+.|
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            5899999999999999999999999999999999987532   11     1356677899999999999999 5889999


Q ss_pred             EEEeCCC
Q 021870          179 RLAKAEP  185 (306)
Q Consensus       179 ~L~K~~~  185 (306)
                      +|.|...
T Consensus       146 ~lPK~~~  152 (175)
T 2klr_A          146 NGPRKQV  152 (175)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9999653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.52  E-value=0.0023  Score=59.03  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=45.4

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++++||++|.+|+.+++|+.|+.+|++|.+++|++..+...+..|...+...
T Consensus       229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999988877777776665553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.004  Score=45.96  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++
T Consensus        38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567778888888888888888888888887776

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.51  E-value=0.0016  Score=51.22  Aligned_cols=44  Identities=23%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +++|+|+|.+|..+++|+.|+.+|+++.++.|+ +.+..-+..++
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le  126 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE  126 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence            579999999999999999999999999998875 44555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.47  E-value=0.0027  Score=47.59  Aligned_cols=49  Identities=14%  Similarity=0.047  Sum_probs=40.0

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      ++.++|.+|.+|+.+++|+.|+.+|+++.+++|++...-..+..|-..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   54 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL   54 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            3568999999999999999999999999999999877655555554433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.43  E-value=0.0026  Score=49.98  Aligned_cols=47  Identities=23%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      |.|+..+|.+||..++|+.|+.+|++|.+++|++..+-.-+..|-..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~   54 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE   54 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH
Confidence            56888999999999999999999999999999987655545444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.39  E-value=0.0019  Score=49.78  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC-----CchHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG-----DSRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~-----d~~~~~wi~k~~~~l~~   51 (306)
                      +.+++++|.+|+.+++|+.|+.+|+++.+++|+     +..+...+..+..++..
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666666666666665     55566666666555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.39  E-value=0.004  Score=46.66  Aligned_cols=50  Identities=22%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+|+++|.+|+.+++|+.|..+|+++.++.| +..+...+..|...+...
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999998 688889999998887764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.34  E-value=0.0029  Score=51.57  Aligned_cols=46  Identities=11%  Similarity=0.051  Sum_probs=39.0

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      ++.+||++|.+|+.+|+|+.|+.+|++|.+++|++...-..+..|-
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   49 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTY   49 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999876555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.26  E-value=0.0036  Score=48.37  Aligned_cols=42  Identities=29%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE   44 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k   44 (306)
                      .+++++|.+|+.+++|+.|..+|+++.+++|++..+..++.+
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            344455555555555555555555555555544444444333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.21  E-value=0.0052  Score=51.55  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=46.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ..|+|-.|++||.+++|+.|+.+|+++.+++|.+..-..-+..++.++.+.
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999999999988888888888888775

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.18  E-value=0.017  Score=53.87  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             CCeeeecCCC----eEEEEEEecCCCCCccEEEeeccEEEEEEEcCC----C---ceEEEcccccccccCCCceEEEe-C
Q 021870          106 YRHEFYQKPE----EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---EAYHFQPRLFGKIIPAKCRYEVL-S  173 (306)
Q Consensus       106 ~r~dWyQt~~----~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~----~---~~y~~~l~L~~~I~pe~s~~kv~-~  173 (306)
                      +..|.|.+++    .+.|++-++|+.+++|.|.+.++.|+|+.....    +   ..|.-.+.|-..|+++..+-++. .
T Consensus        99 p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n  178 (314)
T 2bol_A           99 FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD  178 (314)
T ss_dssp             GGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS
T ss_pred             CccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC
Confidence            4678899999    899999999999999999999999999875321    1   25777889999999999999999 8


Q ss_pred             CEEEEEEEeCCCC
Q 021870          174 TKVEIRLAKAEPI  186 (306)
Q Consensus       174 ~KIEI~L~K~~~~  186 (306)
                      +-+.|+|.|..+.
T Consensus       179 GVL~I~lPK~~~~  191 (314)
T 2bol_A          179 DVLVIEAPVNEPN  191 (314)
T ss_dssp             SEEEEEEEBSSCC
T ss_pred             CEEEEEEeccCcc
Confidence            8999999997653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.16  E-value=0.0069  Score=43.03  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK   43 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~   43 (306)
                      .+++..|.+|+.+++|+.|+..|+++.+++|.+..+-..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   50 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG   50 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            46677777777777777777777777777776654433333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.11  E-value=0.004  Score=52.55  Aligned_cols=51  Identities=10%  Similarity=0.239  Sum_probs=43.7

Q ss_pred             Chhhhhhhhhhhhccc-----------cHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            1 MSKAYWRKATACMKLE-----------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~-----------~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ++.|||.+|+||+.++           +|+.|+.+|++|.+++|++.....-+..+.+..+-
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el  140 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  140 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence            3579999999999985           99999999999999999998887777777665544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.09  E-value=0.0051  Score=45.03  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHH
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL   41 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~w   41 (306)
                      +|+.+|.+|+.+++|+.|+.+|+++.+++|++.....+
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            89999999999999999999999999999998876644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0063  Score=44.83  Aligned_cols=48  Identities=8%  Similarity=-0.030  Sum_probs=40.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+++.+|.+++.+++|+.|+..|+++.+++|.+..+-..+..|-..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   51 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL   51 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999877655555554433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.04  E-value=0.007  Score=46.19  Aligned_cols=50  Identities=16%  Similarity=0.259  Sum_probs=40.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|++..+-..+..|-..+..
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR   76 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999999999987777776666554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.04  E-value=0.0082  Score=46.69  Aligned_cols=50  Identities=16%  Similarity=0.105  Sum_probs=39.0

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      ++.+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-..+..|-..+.
T Consensus        50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           50 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            35688999999999999999999999999999988765555555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.99  E-value=0.0072  Score=44.31  Aligned_cols=42  Identities=19%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE   44 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k   44 (306)
                      .+++.+|.+|+.+++|+.|...|+++.+++|.+..+-..+..
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            455666666666666666666666666666655444333333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.97  E-value=0.0062  Score=50.07  Aligned_cols=44  Identities=14%  Similarity=0.049  Sum_probs=23.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|.+++|++...-..+..|
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            34555555555555555555555555555555555444433333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.96  E-value=0.0074  Score=45.02  Aligned_cols=46  Identities=26%  Similarity=0.291  Sum_probs=28.4

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      .+++++|.+|+.+++|+.|...|+++.+++|.+..+...+..|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            4566666666666666666666666666666665555555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.94  E-value=0.0081  Score=48.41  Aligned_cols=44  Identities=18%  Similarity=0.074  Sum_probs=30.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-..+..+
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  108 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAEL  108 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45677777777777777777777777777777766544444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.0075  Score=46.16  Aligned_cols=39  Identities=23%  Similarity=0.218  Sum_probs=23.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN   40 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~   40 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-.
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            345666666666666666666666666666666544333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.88  E-value=0.0075  Score=45.50  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      .+++.+|.+|+.+++|+.|+..|+++.+++|.+..
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            45555666666666666666666666665555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=95.87  E-value=0.0046  Score=47.23  Aligned_cols=45  Identities=16%  Similarity=0.011  Sum_probs=39.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+++.+|.+|+.+++|++|+..|+++..+.|+++.+......+.
T Consensus        61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           61 QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            568999999999999999999999999999999988776655443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.84  E-value=0.011  Score=44.97  Aligned_cols=51  Identities=20%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+|+..|.+||.+++|+.|+..++++.+++|++..+..=+...+..+...
T Consensus        46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~~   96 (104)
T 2v5f_A           46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHHhc
Confidence            357889999999999999999999999999999988755555555555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.75  E-value=0.0096  Score=47.05  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++..++|++..+-..+..|-
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            456777777777778888888888777777777766555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.74  E-value=0.012  Score=46.29  Aligned_cols=49  Identities=24%  Similarity=0.412  Sum_probs=41.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +.+++++|.+|+.+++|+.|...|+++.+++|.+..+...+..+...+.
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  129 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  129 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999998887766777755443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.53  E-value=0.012  Score=47.37  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|++|+.+|+++..++|++...-..+..|-
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            457778888888888888888888888888887776555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.46  E-value=0.0099  Score=47.87  Aligned_cols=49  Identities=16%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +.++|..|.+|+.+++|+.|..+|+++.+++|++...-..+..|-..+.
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999999999877666666655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.41  E-value=0.014  Score=46.96  Aligned_cols=45  Identities=16%  Similarity=0.019  Sum_probs=36.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|.+...-..+..|-
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            568899999999999999999999999999998866544444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.26  E-value=0.023  Score=42.81  Aligned_cols=44  Identities=11%  Similarity=0.090  Sum_probs=32.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++..++|.+...-..+..|
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   62 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT   62 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            45778888888888888888888888888888776544444444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.25  E-value=0.02  Score=43.38  Aligned_cols=44  Identities=9%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC---chHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKECE   46 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d---~~~~~wi~k~~   46 (306)
                      .++|++|.+|+.+++|+.|...|+++..+.|++   ...-.++..|-
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            567777777777777777777777777777766   33344444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.22  E-value=0.023  Score=46.12  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      .++|=.|++||++++|..|+.+++...+.+|.+.....-...++.++.+
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            4788899999999999999999999999999998888888888777765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.20  E-value=0.018  Score=43.55  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.++|.+|.+++..++|+.|...|+++.+..|++.
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   36 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV   36 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence            44566666666666666666666666666666655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.20  E-value=0.013  Score=48.00  Aligned_cols=48  Identities=8%  Similarity=-0.103  Sum_probs=39.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.++|.+|.+|+.+++|++|...|+++..++|.+..+-.-+..|-..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~   83 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK   83 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999887655555554333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.17  E-value=0.023  Score=41.22  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=17.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+++.+|.+++.+++|+.|+..|+++.+++|.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   40 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES   40 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence            4455555555555555555555555555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.14  E-value=0.022  Score=40.29  Aligned_cols=45  Identities=18%  Similarity=0.324  Sum_probs=38.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|.+......+..+.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999877665555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.11  E-value=0.021  Score=43.70  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=24.3

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK   43 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~   43 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|.+...-..+.
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45666666666666666666666666666666544333333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.08  E-value=0.029  Score=40.58  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=36.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC--CchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~--d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|.  +..+-..+..|
T Consensus        40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A           40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            467899999999999999999999999999998  65544444444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.92  E-value=0.017  Score=46.42  Aligned_cols=48  Identities=4%  Similarity=-0.039  Sum_probs=39.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|.+...-..+..|-..+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~  110 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAA  110 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999876555555554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.82  E-value=0.04  Score=45.16  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .++|=.+++||++|+|..|+.+.+.+.++.|.+.....-...++.++.+.
T Consensus        79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd  128 (134)
T 3o48_A           79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence            46788999999999999999999999999999999888888888888764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.64  E-value=0.044  Score=44.25  Aligned_cols=46  Identities=17%  Similarity=0.087  Sum_probs=36.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE   47 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~   47 (306)
                      ..+++.+|.+|+.+++|+.|...|+++.+++|.+......+..+..
T Consensus       115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            4678888999999999999999999999998888766655555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.59  E-value=0.052  Score=45.00  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .++|=.+++||++++|..|+.+.+...+.+|.+.....-...++.++.+.
T Consensus        78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kd  127 (144)
T 1y8m_A           78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999999998888888888888775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=94.45  E-value=0.036  Score=44.87  Aligned_cols=48  Identities=27%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      ..+++.+|.+|+.+++|+.|+.+|+++.+++|.+..+-..+..|-..+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  154 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK  154 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence            457889999999999999999999999999998876655555554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.44  E-value=0.052  Score=39.84  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=24.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      .+++..|.+|+.+++|+.|+..|+++..+.|.+..
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   78 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence            45667777777777777777777777777666544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.40  E-value=0.051  Score=39.56  Aligned_cols=47  Identities=9%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      +.+++..|.+++..++|+.|...|+++..+.|.+..+-..+..|-..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   50 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK   50 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999887665555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.28  E-value=0.039  Score=46.42  Aligned_cols=48  Identities=15%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCC-CCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAP-GDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~-~d~~~~~wi~k~~~~l   49 (306)
                      +.++|.+|.+|+.+++|+.|+..|+++.+++| .+..+-.++..|-..+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   55 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI   55 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Confidence            45788888888888888888888888888888 7776666655554433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.24  E-value=0.051  Score=40.67  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=25.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI   42 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi   42 (306)
                      .+|+.+|.+|+.+++|+.|...|+++..++|.+..+-..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l   56 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR   56 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            4666677777777777777777777776666654443333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=94.21  E-value=0.042  Score=53.25  Aligned_cols=50  Identities=24%  Similarity=0.415  Sum_probs=44.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +.+|+++|.+|+.+++|++|+.+|++|.+++|++......+..|...+..
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  123 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  123 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999888888888655544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.12  E-value=0.054  Score=39.29  Aligned_cols=45  Identities=16%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             hhhhhhhhhccccHHHHHHHHHHhhccCCCCch-HHHHHHHHHHHH
Q 021870            5 YWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERI   49 (306)
Q Consensus         5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~-~~~wi~k~~~~l   49 (306)
                      .|++|.+++.+++|+.|+..|+++.+++|.+.. +-..+..|-..+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~   48 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL   48 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc
Confidence            688999999999999999999999999999877 656665554444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.07  E-value=0.06  Score=41.23  Aligned_cols=40  Identities=23%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI   42 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi   42 (306)
                      .+++.+|.+|+.+++|+.|+.+|+++.+++|.+..+-..+
T Consensus        66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            4566666666666666666666666666666654433333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.04  E-value=0.015  Score=43.41  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=37.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|.++.+...... -...+...|...
T Consensus        41 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~-~~~~l~~~l~~~   90 (100)
T 3ma5_A           41 VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK-DLSELQDAKLKA   90 (100)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh-HHHHHHHHHHHc
Confidence            56899999999999999999999999999977543322 233334444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=93.94  E-value=0.069  Score=39.58  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=35.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+..|.+|+..++|+.|...|+++..++|.+..+-..+..|-
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   48 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVY   48 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            467889999999999999999999999999888765544444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=93.63  E-value=0.054  Score=45.67  Aligned_cols=42  Identities=12%  Similarity=-0.081  Sum_probs=34.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK   43 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~   43 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-.-+-
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            568899999999999999999999999999998876444333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.51  E-value=0.05  Score=43.89  Aligned_cols=44  Identities=9%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|..+|+++.+++|.+..+-..+..+
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            45788888888888888888888888888888776554444444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.42  E-value=0.064  Score=40.24  Aligned_cols=51  Identities=22%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~--d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.++.|.  +......+...-..|...
T Consensus        53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            568999999999999999999999999999874  334444444444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.36  E-value=0.097  Score=48.18  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+|+.+|.+|+.+++|+.|..+|+++.+++|++..+...+..+...+...
T Consensus       329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  379 (450)
T 2y4t_A          329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS  379 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence            568999999999999999999999999999999999988888887777664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=93.28  E-value=0.077  Score=44.55  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=26.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.+|+++|.+|+.+++|+.|+..|+++.+++|++..+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            3567777777777777777777777777777776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=93.26  E-value=0.092  Score=38.76  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=19.1

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+++.+|.+|+.+++|+.|+..|+++..+.|.+.
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   80 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence            3455555555555555555555555555555543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.24  E-value=0.09  Score=43.46  Aligned_cols=47  Identities=13%  Similarity=0.022  Sum_probs=39.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|.+...-..+..|-..+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  135 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  135 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999998876555555554333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=93.24  E-value=0.088  Score=44.63  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      ++.+++.+|.+++..++|++|+..|+++.+++|++...-..+..+-..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   51 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK   51 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999887766666655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.11  E-value=0.036  Score=46.66  Aligned_cols=37  Identities=14%  Similarity=-0.009  Sum_probs=33.1

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhcc-------CCCCchHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASL-------APGDSRFTNL   41 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~-------~~~d~~~~~w   41 (306)
                      .+|+-+|.++..|++|++|+.+|.+|.++       +|++  ..-|
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~--~~A~  101 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE--GKLW  101 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH--HHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch--HHHH
Confidence            48999999999999999999999999999       9965  3455

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=93.09  E-value=0.078  Score=44.64  Aligned_cols=42  Identities=19%  Similarity=0.094  Sum_probs=36.0

Q ss_pred             hhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            8 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         8 ~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +|.+|+.+++|+.|+.+|+++.+++|++...-..+..+-..+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  101 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR  101 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999987666666554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=93.06  E-value=0.095  Score=40.90  Aligned_cols=44  Identities=14%  Similarity=0.002  Sum_probs=29.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++..++|.+..+-..+..|
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35667777777777777777777777777777665444333333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.06  E-value=0.044  Score=48.80  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +.+|+++|.+|+.+++|++|+.+|+++.+++|++
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5688888888888888888888888888888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=93.01  E-value=0.11  Score=44.13  Aligned_cols=49  Identities=14%  Similarity=-0.024  Sum_probs=41.1

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      ++.+|+.+|.+|+.+++|++|+..|+++.+++|++...-..+..+-..+
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999877665555554444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=92.90  E-value=0.093  Score=40.49  Aligned_cols=45  Identities=13%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      .+|.+|.+++..++|+.|+..|+++.+++|++...-..+..|-..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   63 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE   63 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999987765555555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.84  E-value=0.11  Score=50.06  Aligned_cols=51  Identities=18%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ++.+|+.+|.+|+.+++|++|+.+|++|.+++|++......+..+...+..
T Consensus       257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999998766666666555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=92.63  E-value=0.13  Score=42.39  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.++.|.+.
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            45677777777777777777777777777777655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.60  E-value=0.17  Score=38.02  Aligned_cols=36  Identities=8%  Similarity=-0.201  Sum_probs=29.2

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +..|++-.|.++|..++|+.|..++++..+.+|.++
T Consensus        42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           42 NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            356778888888888888888888888888888743

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=92.58  E-value=0.11  Score=42.70  Aligned_cols=43  Identities=9%  Similarity=-0.053  Sum_probs=35.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE   44 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k   44 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|.+...-.-+..
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            5689999999999999999999999999999987654333333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.24  E-value=0.1  Score=45.40  Aligned_cols=42  Identities=19%  Similarity=0.176  Sum_probs=21.0

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +++.+|.+|+.+++|+.|+..|+++.+++|.+..+-..+..+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  279 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI  279 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            455555555555555555555555555555544443333333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.00  E-value=0.16  Score=37.01  Aligned_cols=44  Identities=18%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++..|.+|+..++|+.|+..|+++..+.|.+..+-..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   52 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   52 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            46899999999999999999999999999999876544444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=91.99  E-value=0.16  Score=43.60  Aligned_cols=46  Identities=7%  Similarity=0.033  Sum_probs=34.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC---chHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKECEE   47 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d---~~~~~wi~k~~~   47 (306)
                      +.++|.+|.+++..++|+.|...|+++.+..|.+   ...-.++..|-.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~   63 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY   63 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            4678888888888888888888888888888877   444445544433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=91.92  E-value=0.19  Score=36.96  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.+|+..|.+|+..++|+.|+..|+++.++.|.+...
T Consensus         1 a~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   37 (136)
T 2fo7_A            1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA   37 (136)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhH
Confidence            3578888999999999999999999888888876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=91.92  E-value=0.14  Score=43.58  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      |..+++++|.+|+..++|+.|+..|+++.+++|.+..+-..+..|-
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~   47 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY   47 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4578899999999999999999999999999998876555444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=91.81  E-value=0.12  Score=49.51  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=37.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.||+++++|+.|+.+|++|.+++|++...-..+..|-
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~  361 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ  361 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            478999999999999999999999999999998765444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=91.78  E-value=0.15  Score=43.30  Aligned_cols=44  Identities=14%  Similarity=-0.111  Sum_probs=27.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|++.....|...+
T Consensus       111 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34566666666666666666666666666666665555444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=91.70  E-value=0.16  Score=47.52  Aligned_cols=48  Identities=6%  Similarity=0.080  Sum_probs=39.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|++|.+++|.+...-..+..|-..+
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  320 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL  320 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999998876555555554433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=91.52  E-value=0.17  Score=42.16  Aligned_cols=43  Identities=21%  Similarity=0.156  Sum_probs=26.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      .+|+.+|.+|+.+++|+.|+..|+++.+++|.+...-..+..+
T Consensus       174 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            4566666666666666666666666666666655444444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.30  E-value=0.23  Score=42.03  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      .++|++|.+|+.+++|+.|...|+++.++.|++..
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            46677777777777777777777777777776554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.29  E-value=0.16  Score=46.46  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=38.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-..+..|-
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  240 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH  240 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            478999999999999999999999999999998866554444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.26  E-value=0.18  Score=44.79  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=18.5

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|++..
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            34555555555555555555555555555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=90.74  E-value=0.23  Score=41.99  Aligned_cols=34  Identities=12%  Similarity=0.129  Sum_probs=17.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|.+.
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence            3444555555555555555555555555555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=90.60  E-value=0.24  Score=42.06  Aligned_cols=44  Identities=11%  Similarity=-0.035  Sum_probs=31.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|+.|+.+|+++.+++|.+..+-.-+..+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  117 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY  117 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            34577888888888888888888888888887766544444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.58  E-value=0.21  Score=50.39  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|.+++|++...-..+..|-..+
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~  514 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA  514 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            567888888888888888888888888888888766655555554333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=90.56  E-value=0.15  Score=46.79  Aligned_cols=44  Identities=11%  Similarity=0.009  Sum_probs=37.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|++...-..+..+-
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~  274 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK  274 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            38999999999999999999999999999998765544444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=90.21  E-value=0.3  Score=38.21  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=26.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE   44 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k   44 (306)
                      .+++..|.+|+.+++|+.|...|+++.++.|.+..+-..+..
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  152 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF  152 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            456666667777777777777777776666665444433333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=90.18  E-value=0.27  Score=42.19  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             hhhhhhhhhhhhcc----------ccHHHHHHHHHHhhccCCCCchHHHHH---HHHHHHHHhh
Q 021870            2 SKAYWRKATACMKL----------EEYETAKVALEKGASLAPGDSRFTNLI---KECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l----------~~y~~A~~~l~~a~~~~~~d~~~~~wi---~k~~~~l~~~   52 (306)
                      ..++|++|.+|+.+          ++|+.|+..|+++.+..|+++......   ..|...+...
T Consensus       185 ~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          185 DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL  248 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence            35899999999988          999999999999999999987554444   4444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=90.13  E-value=0.16  Score=47.92  Aligned_cols=34  Identities=6%  Similarity=0.010  Sum_probs=18.7

Q ss_pred             hhhhhhhhhhhcccc-HHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEE-YETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~-y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+|+.+|.+|+.+++ |++|+.+|++|.+++|++.
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~  166 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  166 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence            455555555555554 5555555555555555543

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=90.08  E-value=0.98  Score=41.92  Aligned_cols=71  Identities=10%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             CCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCC-----------ceEEEcccccccccCCCceEEEeCCEEEEEE
Q 021870          113 KPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGE-----------EAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL  180 (306)
Q Consensus       113 t~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~-----------~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L  180 (306)
                      ++..+.|.+.+ +|+.+++|.|.+..+.|+|+......           ..|.=.+.|-..|+++..+-+...+-+.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            44568888888 99999999999999999998753211           1255567888999999998888899999998


Q ss_pred             EeC
Q 021870          181 AKA  183 (306)
Q Consensus       181 ~K~  183 (306)
                      -|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            773

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=89.75  E-value=0.32  Score=45.83  Aligned_cols=34  Identities=15%  Similarity=0.006  Sum_probs=17.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+|+.+|.+|+.+++|+.|+..|+++.+++|++.
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~  131 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANY  131 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH
Confidence            3444455555555555555555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=89.72  E-value=0.3  Score=40.67  Aligned_cols=46  Identities=13%  Similarity=0.044  Sum_probs=38.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE   47 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~   47 (306)
                      +.+++.+|.+|+.+++|+.|...|+++.+++|.+..+-..+..+-.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  184 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA  184 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999998765555555433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=89.54  E-value=0.49  Score=38.19  Aligned_cols=35  Identities=14%  Similarity=-0.062  Sum_probs=32.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.+++.+|.+|+.+|+|++|...|+++.+++|...
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  142 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ  142 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence            56899999999999999999999999999998743

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=89.34  E-value=0.31  Score=42.63  Aligned_cols=37  Identities=5%  Similarity=-0.026  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.++++.|.+++..++|+.|+..|+++.+++|.+..+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~   39 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA   39 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence            3456666666666666666666666666666655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=89.08  E-value=0.41  Score=42.82  Aligned_cols=48  Identities=15%  Similarity=0.060  Sum_probs=36.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|+.|+..|+++.+++|++...-..+..+-..+
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence            457888888888888899999888888888888766555555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=89.01  E-value=0.42  Score=46.15  Aligned_cols=44  Identities=14%  Similarity=0.002  Sum_probs=36.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|.+++|++...-..+..+
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56899999999999999999999999999999886644444333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=89.00  E-value=0.43  Score=41.28  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|..+|+++.+++|++.....++..|
T Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  313 (330)
T 3hym_B          270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC  313 (330)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence            56899999999999999999999999999999998877777766

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=88.96  E-value=0.35  Score=43.16  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT   39 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~   39 (306)
                      +.+|+.+|++|+.+|+|++|...|+++.+++|+++..-
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45788999999999999999999999999999987653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=88.70  E-value=0.55  Score=36.61  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      .+++..|.+|+.+++|+.|...|+++.++.|.+..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   77 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK   77 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence            34555566666666666666666666655555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=88.62  E-value=0.5  Score=34.52  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=15.2

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +++..|.+|+.+++|+.|+..|+++..+.|.+
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence            34444444444444444444444444444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=88.50  E-value=0.34  Score=49.80  Aligned_cols=48  Identities=13%  Similarity=0.054  Sum_probs=33.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.||+.+|.+|+.+++|++|+.+|++|.+++|++...-.-+..+-..+
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            567777777888888888888888888877777765544444444333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=88.46  E-value=0.34  Score=49.77  Aligned_cols=45  Identities=9%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      ++.||+.+|.+|+.+++|++|+.+|++|.+++|++...-..+..+
T Consensus        76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            367999999999999999999999999999999987654444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=88.37  E-value=0.41  Score=38.87  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=32.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|.+..+-..+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   51 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEI   51 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            45788888888888888888888888888888775544433333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=88.25  E-value=0.42  Score=42.38  Aligned_cols=36  Identities=22%  Similarity=0.144  Sum_probs=20.1

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      .+|+.+|.+|+.+++|+.|+..|+++.+++|.+...
T Consensus        99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  134 (368)
T 1fch_A           99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA  134 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHH
Confidence            345555555555555555555555555555554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=88.11  E-value=0.45  Score=44.62  Aligned_cols=47  Identities=13%  Similarity=0.084  Sum_probs=35.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      +.+|+.+|.+|+.+++|+.|+..|+++.+++|++...-..+..|-..
T Consensus        59 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            46788889999999999999999999998888876655444444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=88.10  E-value=0.18  Score=42.35  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             ChhhhhhhhhhhhccccH----------HHHHHHHHHhhccCCCCch
Q 021870            1 MSKAYWRKATACMKLEEY----------ETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y----------~~A~~~l~~a~~~~~~d~~   37 (306)
                      ++.+|++.|.++..+++|          ++|+.+|++|.+++|+...
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~   81 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE   81 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence            367899999999999875          5999999999999999763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=87.97  E-value=0.47  Score=40.05  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=32.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.++|.+|.+++..++|+.|...|+++.+..|.++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~   38 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP   38 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            56899999999999999999999999999999765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=87.94  E-value=0.28  Score=39.72  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT   39 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~   39 (306)
                      +.+++.+|.+|+.+++|++|+..|+++..++| ++.+.
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~   76 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK   76 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH
Confidence            56889999999999999999999999999988 66543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=87.85  E-value=0.49  Score=38.40  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|.+..+-..+..+
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            45789999999999999999999999999999876554444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=87.83  E-value=0.48  Score=39.17  Aligned_cols=44  Identities=16%  Similarity=0.067  Sum_probs=29.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++..++|.+..+-..+..+
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            35667777777777777777777777777777665444333333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=87.81  E-value=0.46  Score=45.56  Aligned_cols=46  Identities=9%  Similarity=0.011  Sum_probs=32.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +.+|+.+|.+|+.+++|++|+.+|++|.+++|+ .  ..|.......+.
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~lg~~~~~  182 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQNLSMVLRQ  182 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHHHHHHHHH
Confidence            467888888888888888888888888888877 2  344444433443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=87.57  E-value=0.44  Score=42.56  Aligned_cols=41  Identities=12%  Similarity=0.187  Sum_probs=26.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK   43 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~   43 (306)
                      .++|.+|.+|+.+++|+.|+..|+++.+++|.+..+-..+.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  106 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLG  106 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            35677777777777777777777777777776654433333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=87.12  E-value=0.62  Score=40.60  Aligned_cols=44  Identities=20%  Similarity=0.121  Sum_probs=33.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.+++|.+...-..+..+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            45788888888888888888888888888888776544444333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=86.98  E-value=0.47  Score=39.22  Aligned_cols=34  Identities=12%  Similarity=0.101  Sum_probs=18.5

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +++.+|.+|+.+++|+.|+..|+++.++.|.+..
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  194 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD  194 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            4455555555555555555555555555554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=86.92  E-value=0.68  Score=41.01  Aligned_cols=44  Identities=16%  Similarity=0.090  Sum_probs=30.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|+.|+..|+++.+++|.+..+-..+..+
T Consensus       251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35677778888888888888888888887777765544444444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=86.70  E-value=0.52  Score=43.71  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=19.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      .+|+.+|.+|+.+++|+.|+.+|+++.+++|++.
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~   73 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS   73 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH
Confidence            3455555566666666666666665555555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=86.60  E-value=0.61  Score=39.05  Aligned_cols=37  Identities=16%  Similarity=-0.001  Sum_probs=24.7

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT   39 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~   39 (306)
                      .+++..|.+|+.+++|+.|+..|+++.+++|.+..+-
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  108 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL  108 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence            4566677777777777777777777777766654433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=86.50  E-value=0.6  Score=40.31  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=23.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.+++.+|.+|+.+++|+.|...|+++.+++|.+...
T Consensus        55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   91 (327)
T 3cv0_A           55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   91 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH
Confidence            3456666666666677777777776666666665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.47  E-value=0.33  Score=42.99  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +|+++|++|+.+++|+.|+.+|+++.+++|+..
T Consensus       201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            689999999999999999999999999999744

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=86.19  E-value=0.71  Score=41.67  Aligned_cols=38  Identities=13%  Similarity=0.032  Sum_probs=32.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT   39 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~   39 (306)
                      +.+|+.+|.+|+.+++|+.|+..|+++..++|++...-
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  104 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY  104 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHH
Confidence            56789999999999999999999999999998876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=86.13  E-value=0.59  Score=45.34  Aligned_cols=48  Identities=17%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+.+|.+|+.+++|++|+.+|+++.+++|++...-..+..+...+
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            457888888888888888888888888888888776666666665555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=85.97  E-value=0.61  Score=45.25  Aligned_cols=45  Identities=16%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|++|+.+|+++.+++|++...-..+..|-
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            568899999999999999999999999999998876555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=85.80  E-value=0.9  Score=37.95  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=15.9

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +++.+|.+|+.+++|+.|+..|+++.++.|.+.
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  175 (252)
T 2ho1_A          143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP  175 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH
Confidence            344444444555555555555555444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=85.64  E-value=0.75  Score=42.64  Aligned_cols=43  Identities=19%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+..++|+.|+..|+++..++| +..+-..+..|
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~   48 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSAC   48 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHH
Confidence            67899999999999999999999999999998 44433333333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=84.72  E-value=0.43  Score=44.81  Aligned_cols=49  Identities=12%  Similarity=0.194  Sum_probs=40.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +.+|+.+|.+|+..++|+.|+..|+++..++|++..+-.-+..|-..+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   73 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG   73 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999998776665555544443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=84.71  E-value=0.81  Score=41.84  Aligned_cols=37  Identities=24%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.+|+.+|.+|+.+++|+.|+..|+++.+++|.+...
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            3466777777777777777777777777777765443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=84.71  E-value=0.87  Score=39.23  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+++.+|.+|+.+++|+.|+..|+++.++.|.+...-..+..+
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34677777778888888888888888877777765544444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=84.45  E-value=1.1  Score=39.68  Aligned_cols=35  Identities=11%  Similarity=-0.127  Sum_probs=32.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS   36 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~   36 (306)
                      +.++|.+|.+|+.+++|++|+..|+++..++|++.
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~  253 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA  253 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            56899999999999999999999999999999873

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=83.73  E-value=0.75  Score=46.33  Aligned_cols=45  Identities=16%  Similarity=0.005  Sum_probs=38.1

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      +.+|+.+|.+|+.+++|++|+..|+++.+++|++...-..+..+-
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE  477 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            568999999999999999999999999999999876554444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=82.88  E-value=0.87  Score=40.59  Aligned_cols=36  Identities=8%  Similarity=0.027  Sum_probs=32.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.+++++|.+++.+++|+.|...|+++.++.|.+..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   44 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK   44 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH
Confidence            457899999999999999999999999999998864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=81.93  E-value=1.3  Score=33.18  Aligned_cols=31  Identities=6%  Similarity=0.146  Sum_probs=28.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLA   32 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~   32 (306)
                      +.-+|..|.++|..++|..|..-|+.|.++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~   35 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQL   35 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhh
Confidence            4568999999999999999999999999864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.88  E-value=1.3  Score=38.90  Aligned_cols=36  Identities=17%  Similarity=0.052  Sum_probs=32.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.+|++.|.+|+.+++|+.|+.+|+++.++.|....
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            357889999999999999999999999999987654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=81.35  E-value=0.97  Score=41.21  Aligned_cols=31  Identities=23%  Similarity=0.106  Sum_probs=15.6

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      ++|++|+++.++++.++|...|+++...+|.
T Consensus       210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            4445555555555555555555555555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=81.22  E-value=1.4  Score=37.64  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=24.6

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGAS   30 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~   30 (306)
                      ++.++|..|.+|+..++|+.|...|+++.+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~   34 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD   34 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            356788888888888888888888888887

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.92  E-value=1.8  Score=32.23  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             Chhhhhhhhhhhhcccc---HHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEE---YETAKVALEKGASLAPGDSRFTNLIKECEE   47 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~---y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~   47 (306)
                      ++.+++.+|.++|..++   ...|...|++|.+++|++..-...+-....
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~   54 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF   54 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence            46789999999986666   899999999999999999876666555433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=80.68  E-value=0.99  Score=41.03  Aligned_cols=33  Identities=6%  Similarity=0.114  Sum_probs=23.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      +.+|++.|.+|+.+++|+.|+.+|++|.++.+.
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  173 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN  173 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            456777777777777777777777777776544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=80.66  E-value=1.6  Score=40.34  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             hhhhhhhhhhhhcc--ccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKL--EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l--~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +.+|..+|.++..+  ++|+.|+.+|++|.+++|+++.+..-+..+-..+..
T Consensus       136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN  187 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            35677788877654  689999999999999999998776666666555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=80.16  E-value=0.83  Score=34.48  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCC
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAP   33 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~   33 (306)
                      .+++.+|.+|+.+++|+.|+.+|+++.++.+
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~   40 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK   40 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	5e-25
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-24
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	2e-11
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	2e-10
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	5e-04

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 5e-25
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct: 2   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 61

Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
            +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 62  EQSTFKVLSTKIEIKLKKPEAVRWEKLE 89

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 1e-24
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 95  EAAMAAPARPKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------ 147
           +   +       +++ Y+K P+ VVV V+ K I      V F EQ  ++           
Sbjct: 9   DEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLR 68

Query: 148 ------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF 193
                     + +Q +L   I P +C +   +++++I L K +  +W  LE 
Sbjct: 69  LHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEA 120

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 170
           Y + + V +    +     NV  +  +   S        + +  +  LF  I P   +++
Sbjct: 9   YDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFK-HLNEIDLFHCIDPNDSKHK 67

Query: 171 VLSTKVEIRLAKAEP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 228
                +   L K E    W  L                     +  +       VD++ 
Sbjct: 68  RTDRSILCCLRKGESGQSWPRL----------------TKERAKLNW-----LSVDFNN 105

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 107 RHEFYQKPEEVVVTV--FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
            + + Q   ++ V V      +  K V+V      + V++     E    + +L  KI  
Sbjct: 21  NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINT 80

Query: 165 AKCRYEVLSTKVEI-RLAKAEPIQWSSL 191
               + +   K  +  L+K     W+++
Sbjct: 81  ESSLWSLEPGKCVLVNLSKVGEYWWNAI 108

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 9   ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 53
              C KL EY  AK  ++        + +   L    E++I +ET
Sbjct: 80  TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKET 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.9
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.88
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.78
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.61
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.96
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.41
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.18
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.28
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.14
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.96
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.9
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.21
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.8
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	94.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	94.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	93.17
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	92.76
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	91.71
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	89.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	89.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	88.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	87.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	86.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	83.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	82.82

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-24  Score=166.31  Aligned_cols=91  Identities=36%  Similarity=0.678  Sum_probs=86.7

Q ss_pred             CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021870          104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  183 (306)
Q Consensus       104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~  183 (306)
                      .++||+||||++.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         1 sk~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~   80 (92)
T d1rl1a_           1 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   80 (92)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCCceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEEC
Confidence            37899999999999999999999999999999999999999877888999999999999999999999999999999999


Q ss_pred             CCCCCCceeec
Q 021870          184 EPIQWSSLEFS  194 (306)
Q Consensus       184 ~~~~W~~L~~~  194 (306)
                      ++.+|++|++.
T Consensus        81 ~~~~W~~L~~~   91 (92)
T d1rl1a_          81 EAVRWEKLEGQ   91 (92)
T ss_dssp             SCCCCSSSBTT
T ss_pred             CCCcCcCcccC
Confidence            99999999864

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-23  Score=170.42  Aligned_cols=94  Identities=24%  Similarity=0.429  Sum_probs=85.9

Q ss_pred             CCCCCeeeecCC-CeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC------------ceEEEcccccccccCCCceE
Q 021870          103 RPKYRHEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE------------EAYHFQPRLFGKIIPAKCRY  169 (306)
Q Consensus       103 ~~k~r~dWyQt~-~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~------------~~y~~~l~L~~~I~pe~s~~  169 (306)
                      .+++||+|||++ +.|+|+||+|+|+++++.|+|.+++|+|.|+..+|            ..|.++++||++|+|++|+|
T Consensus        17 ~~~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~   96 (134)
T d1wh0a_          17 LAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTF   96 (134)
T ss_dssp             ESCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEE
T ss_pred             ccccccceeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEE
Confidence            458999999995 78999999999999999999999999999976543            36889999999999999999


Q ss_pred             EEeCCEEEEEEEeCCCCCCCceeeccC
Q 021870          170 EVLSTKVEIRLAKAEPIQWSSLEFSKG  196 (306)
Q Consensus       170 kv~~~KIEI~L~K~~~~~W~~L~~~~~  196 (306)
                      +|++++|||+|+|+++.+|++|+....
T Consensus        97 ~v~~~kiei~L~K~~~~~W~~Le~~~~  123 (134)
T d1wh0a_          97 CFTASRIDICLRKRQSQRWGGLEAPAA  123 (134)
T ss_dssp             EECSSEEEEEEEESSSCCCSCSBCCCS
T ss_pred             EeCCCEEEEEEEeCCCCcCcCcccccc
Confidence            999999999999999999999997654

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-19  Score=142.68  Aligned_cols=87  Identities=20%  Similarity=0.255  Sum_probs=78.5

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  185 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~  185 (306)
                      ++.||||.+.|+|+|+++++  .++.|+|+.++|.|++.. .+|..|.++++||++|+|++|++++.+++|+|+|+|+++
T Consensus         5 ~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~   82 (110)
T d1ejfa_           5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (110)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             CcEEEECCCEEEEEEEeCCC--CCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEcCC
Confidence            58999999999999999976  688899999999998864 466789999999999999999999999999999999886


Q ss_pred             -CCCCceeecc
Q 021870          186 -IQWSSLEFSK  195 (306)
Q Consensus       186 -~~W~~L~~~~  195 (306)
                       .+|++|+..+
T Consensus        83 ~~~W~~L~~~~   93 (110)
T d1ejfa_          83 GQSWPRLTKER   93 (110)
T ss_dssp             TCCCSSSBSSC
T ss_pred             CCCCCceecCC
Confidence             6899999764

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=122.03  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             CeeeecCCCeEEEEEEec-C-CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEE-EeC
Q 021870          107 RHEFYQKPEEVVVTVFAK-G-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL-AKA  183 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k-~-v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L-~K~  183 (306)
                      +|.|+||.+.|+|+|.++ + +..++|.|+|..++|.|.+...++..|.+..+||++|+|++|+|.+.+.+++|.| +|.
T Consensus        21 ~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lkK~  100 (124)
T d1wgva_          21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKV  100 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECBS
T ss_pred             CeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCEEEEEEEec
Confidence            799999999999999986 3 4458999999999999999877778899999999999999999999998776655 555


Q ss_pred             CCCCCCceeeccC
Q 021870          184 EPIQWSSLEFSKG  196 (306)
Q Consensus       184 ~~~~W~~L~~~~~  196 (306)
                      ...+|++|...+.
T Consensus       101 ~~~~W~~L~~ge~  113 (124)
T d1wgva_         101 GEYWWNAILEGEE  113 (124)
T ss_dssp             SSCCCSCSBTTSC
T ss_pred             CCCcChhhccCCc
Confidence            6689999987654

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.2e-12  Score=104.69  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             CCCeeeecCCCeEEEEEEec---CCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEE
Q 021870          105 KYRHEFYQKPEEVVVTVFAK---GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRL  180 (306)
Q Consensus       105 k~r~dWyQt~~~V~ItI~~k---~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L  180 (306)
                      ..+|.|.||.+.|.|+|.++   ++.+++|.|+|+.++|.|.+..   ....+...||++|+|+.|+|.+.+. .|+|.|
T Consensus         7 ~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~---~~~ll~g~L~~~I~~des~W~ied~~~l~i~L   83 (131)
T d1wfia_           7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKG---QPPVVDGELYNEVKVEESSWLIEDGKVVTVHL   83 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETT---SCCSBCSCBSSCBCSTTCEEEEETTTEEEEEE
T ss_pred             CCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcC---CceeecccccCcccccccEEEEeCCCEEEEEE
Confidence            34799999999999999774   5778999999999999998752   2355667999999999999999865 689999


Q ss_pred             EeCCC-CCCCceeeccC
Q 021870          181 AKAEP-IQWSSLEFSKG  196 (306)
Q Consensus       181 ~K~~~-~~W~~L~~~~~  196 (306)
                      .|+.. .+|++|...+.
T Consensus        84 ~K~~~~~~W~~l~~gd~  100 (131)
T d1wfia_          84 EKINKMEWWNRLVTSDP  100 (131)
T ss_dssp             EBSSSCCCCSCSBSSCC
T ss_pred             EECCCCccCHHHcCCCC
Confidence            99866 68999987653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=2.1e-06  Score=69.06  Aligned_cols=52  Identities=31%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +++||||+|.+|+.+++|+.|+.+|++|.+++|++..+..-+..|..+|++.
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=3.4e-06  Score=68.47  Aligned_cols=52  Identities=27%  Similarity=0.459  Sum_probs=49.2

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +++||||+|.+|+++++|+.|+.+|++|.+++|++..+..-+..|..+|...
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999988775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.5e-06  Score=68.27  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=48.8

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++.||||+|.+|+.+++|+.|+.+|++|.+++|++..+...+..|..++...
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999998888765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.74  E-value=1.5e-05  Score=64.64  Aligned_cols=52  Identities=25%  Similarity=0.383  Sum_probs=48.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.+||||+|.+|+.+++|+.|+.+|++|.+++|+++.+..-+..|...+...
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            4689999999999999999999999999999999999999999998888764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.9e-05  Score=59.32  Aligned_cols=47  Identities=28%  Similarity=0.369  Sum_probs=42.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE   47 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~   47 (306)
                      ++.+||++|.++..+++|++|+.+|++|.+++|+++.+...+.+++.
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999888888865

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.41  E-value=0.0006  Score=52.13  Aligned_cols=79  Identities=11%  Similarity=0.143  Sum_probs=66.5

Q ss_pred             CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC-----CC-----------ceEEEcccccccccCCCceEE
Q 021870          107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----GE-----------EAYHFQPRLFGKIIPAKCRYE  170 (306)
Q Consensus       107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~-----~~-----------~~y~~~l~L~~~I~pe~s~~k  170 (306)
                      .++.+++++.+.|.+.++|+.++++.|.+.++.|.|+....     .+           ..|...+.|-..|+++..+..
T Consensus        12 pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~   91 (115)
T d1shsa_          12 PISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK   91 (115)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEE
T ss_pred             ceEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEE
Confidence            37999999999999999999999999999999999987431     11           135556788889999999999


Q ss_pred             EeCCEEEEEEEeCCC
Q 021870          171 VLSTKVEIRLAKAEP  185 (306)
Q Consensus       171 v~~~KIEI~L~K~~~  185 (306)
                      ....-+.|+|.|...
T Consensus        92 ~~nGvL~I~lpK~~~  106 (115)
T d1shsa_          92 FENGVLSVILPKAES  106 (115)
T ss_dssp             EETTEEEEEEEBCGG
T ss_pred             EECCEEEEEEEeCCC
Confidence            999999999998643

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.31  E-value=0.00077  Score=54.08  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=63.6

Q ss_pred             CCeeeecCCCeEEEEEEecCCCCCccEEEeecc-EEEEEEEcC-----CCc----------eEEEcccccccccCCCceE
Q 021870          106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----GEE----------AYHFQPRLFGKIIPAKCRY  169 (306)
Q Consensus       106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~-~l~v~i~~~-----~~~----------~y~~~l~L~~~I~pe~s~~  169 (306)
                      ++++|+++++.+.|.+.++|+.++++.|+++++ .|.++....     .+.          .|.-.+.|-..|+++..+-
T Consensus        43 p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A  122 (150)
T d1gmea_          43 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  122 (150)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEE
Confidence            378999999999999999999999999999864 566665321     111          2444578889999999888


Q ss_pred             EEeCCEEEEEEEeCC
Q 021870          170 EVLSTKVEIRLAKAE  184 (306)
Q Consensus       170 kv~~~KIEI~L~K~~  184 (306)
                      +...+-++|+|.|..
T Consensus       123 ~~~nGvL~I~lpK~~  137 (150)
T d1gmea_         123 GLENGVLTVTVPKAE  137 (150)
T ss_dssp             EEETTEEEEEEECCC
T ss_pred             EEECCEEEEEEEcCC
Confidence            889999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00013  Score=56.66  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      .|+|-.|++|+.+|+|+.|+.+|+++.+++|++..-..-+..++.++.+
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999999998877777777777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00014  Score=57.70  Aligned_cols=51  Identities=24%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      +.||+++|.+|+.+|+|++|+.+|++|..++|++..+...+.+|...+...
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  128 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK  128 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999988888887766553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00018  Score=52.87  Aligned_cols=49  Identities=18%  Similarity=0.084  Sum_probs=44.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA   50 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~   50 (306)
                      +.+|+-.|.+|+.+++|+.|+.+|+++.+++|+++....-+..++..|.
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            4578889999999999999999999999999999998888888887765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00056  Score=53.63  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      .|+|=.|++||++|+|+.|+.+|+++.+++|++.....-...++.+|.+.
T Consensus        74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~kd  123 (124)
T d2pqrb1          74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  123 (124)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhcc
Confidence            57889999999999999999999999999999998888888888888763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0015  Score=54.23  Aligned_cols=48  Identities=8%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+||.+|++|+.+|+|+.|..+|++|.+++|++...-..+..|-..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~   84 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   84 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH
Confidence            568999999999999999999999999999999877665555554444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0013  Score=52.64  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=23.2

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      +.||+++|.+|+.+++|+.|+.+|++|.+++|.
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            456777777777777777777777777766654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0024  Score=48.83  Aligned_cols=49  Identities=22%  Similarity=0.235  Sum_probs=42.9

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +.+|+|+|.+++.+++|+.|+.+|+++..+.+. +.+..-+..|+..|+.
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lke  127 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999998875 5677788888887765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.08  E-value=0.0036  Score=46.67  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=23.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT   39 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~   39 (306)
                      +.+|+.+|.+|+++++|+.|..+|++|.+++|++...-
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   87 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH   87 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhcccccccccccccccch
Confidence            45666666666666666666666666666666654433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0033  Score=50.07  Aligned_cols=43  Identities=14%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      ++.+|+.+|.+|+.+++|+.|+.+|++|.+++|+...  .|....
T Consensus        37 ~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~--a~~~lg   79 (201)
T d2c2la1          37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK--AHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH--HHHHHH
T ss_pred             CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH--HHHHHH
Confidence            4678899999999999999999999999999987644  344433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0032  Score=49.40  Aligned_cols=44  Identities=14%  Similarity=0.002  Sum_probs=31.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      +.+|+.+|.+|+.+++|+.|..+|+++.+++|++...-..+..|
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56778888888888888888888888888888775544433333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0031  Score=51.68  Aligned_cols=48  Identities=8%  Similarity=-0.094  Sum_probs=38.8

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      +++++|-+|.+|+.+++|+.|+.+|++|.+++|+....-.-+..|-.+
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            467899999999999999999999999999999986544434444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.76  E-value=0.0023  Score=50.40  Aligned_cols=50  Identities=18%  Similarity=0.141  Sum_probs=38.7

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC----chHHHHHHHHHHHHHh
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD----SRFTNLIKECEERIAE   51 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d----~~~~~wi~k~~~~l~~   51 (306)
                      +.+|+|+|.+|+.+++|++|+.+|++|.++.|..    ......+......|..
T Consensus       100 ~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1         100 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999999986543    2345556655555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0061  Score=45.63  Aligned_cols=48  Identities=19%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      +.+|+-+|.+|+.+++|+.|+.+|++|.+++|++...-..+..|-..+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            456777888888888888888888888888887776555555554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0092  Score=49.10  Aligned_cols=46  Identities=15%  Similarity=-0.055  Sum_probs=24.6

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER   48 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~   48 (306)
                      .+|+++|.+|+.+++|+.|+..|+++.+++|.+.....|+..+...
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555544444444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.92  E-value=0.0091  Score=46.62  Aligned_cols=52  Identities=10%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             Chhhhhhhhhhhhccc-----------cHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021870            1 MSKAYWRKATACMKLE-----------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE   52 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~-----------~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~   52 (306)
                      ++.||+.+|++|+.++           .|..|..+|++|.+++|++.....-+..|.+.++..
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            4679999999999875           489999999999999999998888888887666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0061  Score=49.81  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      ++.||+.+|++|+++++|++|+.+|++|..+.+.+
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            36799999999999999999999999999876654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.016  Score=43.83  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      |.++--+|.+||..++|+.|+.+|+++.+++|++..+-.-+..|
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~   47 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAV   47 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHH
Confidence            45566678888888888888888888888888776543333333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.68  E-value=0.0094  Score=44.24  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=40.7

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      ..+|+.|++++..|+|..|...|+++..++|++...-.++..|-..+..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   65 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK   65 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh
Confidence            4579999999999999999999999999999987766666666544433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.63  E-value=0.016  Score=45.24  Aligned_cols=49  Identities=12%  Similarity=-0.001  Sum_probs=40.8

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      .+|+-+|.+|+.+++|..|+.++++|.+++|.+...-.++..|-..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~  116 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF  116 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC
Confidence            4677899999999999999999999999999987666666666555544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.28  E-value=0.018  Score=45.44  Aligned_cols=49  Identities=8%  Similarity=0.115  Sum_probs=40.2

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      .+|+-+|++|+++++|+.|+.+|.+|.+++|++...-..+..|-..+..
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~  126 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE  126 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC
Confidence            4677789999999999999999999999999987766666665554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.02  Score=45.58  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=42.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      .+|..+|.+|+++++|+.|+.+|+++..++|++...-.++..|-..+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  111 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND  111 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh
Confidence            5677899999999999999999999999999998887777777666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.0087  Score=43.27  Aligned_cols=34  Identities=6%  Similarity=0.106  Sum_probs=30.6

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD   35 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d   35 (306)
                      +..+|+.|.++|..++|..|...|++|.++.|.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~   38 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG   38 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Confidence            5678999999999999999999999999887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.033  Score=47.16  Aligned_cols=39  Identities=21%  Similarity=0.091  Sum_probs=27.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN   40 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~   40 (306)
                      +.||+.+|.+|+.+++|+.|+.+|++|.+++|++...-.
T Consensus        53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   91 (323)
T d1fcha_          53 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM   91 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence            456777777777777777777777777777776654433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=93.17  E-value=0.037  Score=43.61  Aligned_cols=48  Identities=23%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021870            4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE   51 (306)
Q Consensus         4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~   51 (306)
                      +|+-+|+||+++++|..|+.+|++|..++|++...--++..|-..+..
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~  113 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE  113 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC
Confidence            456689999999999999999999999999887665555555555433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.97  E-value=0.047  Score=42.28  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=36.5

Q ss_pred             Chhhhhhhhhhhhcc----------ccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKL----------EEYETAKVALEKGASLAPGDSRFTNLIKECE   46 (306)
Q Consensus         1 ~aka~~R~Gia~~~l----------~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~   46 (306)
                      ++.+|+++|.+|+.+          +.|+.|..+|++|.+++|++...--.+-.+-
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            478999999999954          5668999999999999999876544444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.053  Score=45.69  Aligned_cols=44  Identities=2%  Similarity=-0.089  Sum_probs=35.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      ..+++.+|.+|+.+++|+.|+..|+++.+++|++...-.-+..|
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~   76 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56889999999999999999999999999999876544333333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.084  Score=44.46  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF   38 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~   38 (306)
                      +.+|+++|.+|+.+++|+.|+.+|+++.+++|++...
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence            5688999999999999999999999999999987653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.15  Score=42.63  Aligned_cols=43  Identities=12%  Similarity=-0.020  Sum_probs=29.0

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC   45 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~   45 (306)
                      .+++++|.+|+.+++|++|+..|+++.+++|++..+-..+..+
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  348 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4566777777777777777777777777777765544444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=89.28  E-value=0.069  Score=44.18  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPG   34 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~   34 (306)
                      +++++|..|..+|+.++|.+|+..|++|.+++..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~   34 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN   34 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
Confidence            6899999999999999999999999999988643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.24  Score=42.71  Aligned_cols=46  Identities=7%  Similarity=-0.034  Sum_probs=31.7

Q ss_pred             hhhhhhhhhhhhcccc-HHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021870            2 SKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKECEE   47 (306)
Q Consensus         2 aka~~R~Gia~~~l~~-y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~   47 (306)
                      +.||+.||.++..+++ |++|+.+|+++.+++|+....-..+..+-.
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            4677888888887764 888888888888888876544444444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.15  Score=44.11  Aligned_cols=49  Identities=2%  Similarity=-0.136  Sum_probs=37.8

Q ss_pred             ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021870            1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI   49 (306)
Q Consensus         1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l   49 (306)
                      ++.+|+.+|.++..+++|++|+.+|.+|.+++|++...-.-+..|-..+
T Consensus       111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999998754333333333333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.56  E-value=0.14  Score=39.40  Aligned_cols=32  Identities=16%  Similarity=0.035  Sum_probs=28.8

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCC
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAP   33 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~   33 (306)
                      +.+|..+|.+|+.|++|+.|+.+++++..+.+
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            46899999999999999999999999998744

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.11  E-value=0.3  Score=41.65  Aligned_cols=36  Identities=8%  Similarity=-0.163  Sum_probs=32.4

Q ss_pred             hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021870            2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR   37 (306)
Q Consensus         2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~   37 (306)
                      +.+|+.+|.+|..+++|++|+.+|++|.+++|.+..
T Consensus       276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            467899999999999999999999999999996543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.82  E-value=0.5  Score=37.60  Aligned_cols=39  Identities=18%  Similarity=-0.059  Sum_probs=32.9

Q ss_pred             hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHH
Q 021870            3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL   41 (306)
Q Consensus         3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~w   41 (306)
                      .|+.++|.+++.+++|+.|+.+|+++.+++|.+..+-.-
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~  106 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQ  106 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHH
Confidence            578889999999999999999999999999987764443