Citrus Sinensis ID: 021884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
ccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccc
ccccccccccHHHHHHHHccccccHHcEcccccccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccccHHHHHHHHHccHHHHHHHcc
MDMAKATSVSKTIEQMVthseqpssgfivketkfgsiesspplgpfpvidmslfssqehVGTELEKLKSslssagcfqvvghgmsdsFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRfnfyppcsrpdlvhgvkphtdrsgitillqdreveglqirvdgkwyrvpviphalvvnlgdqMQIMtngiykspmhrvvtNTEKLRISIAaftepepeneigpvdqlideqrpklyRNVRNYGAINYECYQKGLVALDTVRA
mdmakatsvsktieqmvthseqpssgfIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFfqlpaeekqkharaVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSgitillqdrevEGLQIrvdgkwyrvPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAaftepepeneigpvdqlideqRPKLYRNVRNYGAINYECYQKGLVALDTVRA
MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTeleklksslssAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
***********************************************VIDM*********************SAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAE***KHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFT**********VDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALD****
*************************GFIV**************GPFPVIDMSLFSS*****TELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
*************EQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
*******SVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
D4N502360 Codeine O-demethylase OS= N/A no 0.777 0.661 0.365 1e-44
Q39224358 Protein SRG1 OS=Arabidops no no 0.846 0.723 0.332 2e-44
D4N501364 Probable 2-oxoglutarate/F N/A no 0.846 0.711 0.347 4e-44
D4N500364 Thebaine 6-O-demethylase N/A no 0.846 0.711 0.337 1e-41
Q9M547334 Flavonol synthase/flavano N/A no 0.748 0.685 0.367 5e-41
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.758 0.688 0.342 6e-39
O48882330 1-aminocyclopropane-1-car N/A no 0.754 0.7 0.321 9e-38
Q00985314 1-aminocyclopropane-1-car N/A no 0.754 0.735 0.313 1e-37
P31528321 Probable 1-aminocycloprop N/A no 0.800 0.763 0.319 1e-36
Q07512348 Flavonol synthase/flavano N/A no 0.673 0.591 0.347 2e-36
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function desciption
 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 149/282 (52%), Gaps = 44/282 (15%)

Query: 47  PVIDM-SLFSSQEHVGT-ELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPA 104
           PVID+ +L S +  VG  EL+KL S+    G FQ+V HG+    +D ++     FF LP 
Sbjct: 55  PVIDLQNLLSPEPVVGKLELDKLHSACKEWGFFQLVNHGVDALLMDNIKSEIKGFFNLPM 114

Query: 105 EEKQKHARAVNEIEG------------------------------------------EIL 122
            EK K+ +   + EG                                          E L
Sbjct: 115 NEKTKYGQQDGDFEGFGQPYIESEDQRLDWTEVFSMLSLPLHLRKPHLFPELPLPFRETL 174

Query: 123 NEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKP 182
             Y  K+K ++ V+ + + KSL L E   +    +  L  +R N+YPPC RP+LV G+  
Sbjct: 175 ESYLSKMKKLSTVVFEMLEKSLQLVEIKGMTDLFEDGLQTMRMNYYPPCPRPELVLGLTS 234

Query: 183 HTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRV 242
           H+D SG+TILLQ  EVEGLQIR + +W  +  +P A +VN+GD ++IMTNGIY+S  HR 
Sbjct: 235 HSDFSGLTILLQLNEVEGLQIRKEERWISIKPLPDAFIVNVGDILEIMTNGIYRSVEHRA 294

Query: 243 VTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVR 284
           V N+ K R+SIA F + + E+EIGP+  L+  + P L++  R
Sbjct: 295 VVNSTKERLSIATFHDSKLESEIGPISSLVTPETPALFKRGR 336
Non-heme dioxygenase catalyzing the conversion of codeine to morphine. Catalyzes also, with lower efficiency, the 3-O-demethylation of thebaine to oripavine and of (S)-scoulerine to 3-O-demethylscoulerine. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, pavine or noscapine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 3EC: 2
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|O48882|ACCO2_MALDO 1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1 Back     alignment and function description
>sp|Q00985|ACCO1_MALDO 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1 Back     alignment and function description
>sp|P31528|ACCO_DIACA Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
343887269348 flavonol synthase/flavanone 3-hydroxylas 1.0 0.879 0.867 1e-170
357478365351 Flavonol synthase/flavanone 3-hydroxylas 0.950 0.829 0.566 1e-107
255585999354 Flavonol synthase/flavanone 3-hydroxylas 0.980 0.847 0.571 1e-106
217073944351 unknown [Medicago truncatula] 0.950 0.829 0.563 1e-106
388503360351 unknown [Medicago truncatula] 0.950 0.829 0.560 1e-105
363807253351 uncharacterized protein LOC100793145 [Gl 0.964 0.840 0.555 1e-103
225446207356 PREDICTED: protein SRG1 [Vitis vinifera] 0.970 0.834 0.518 3e-97
359484721351 PREDICTED: LOW QUALITY PROTEIN: protein 0.970 0.846 0.520 1e-96
147784777357 hypothetical protein VITISV_001365 [Viti 0.970 0.831 0.523 3e-96
388511034356 unknown [Lotus japonicus] 0.977 0.839 0.501 4e-94
>gi|343887269|dbj|BAK61815.1| flavonol synthase/flavanone 3-hydroxylase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 302/348 (86%), Positives = 303/348 (87%), Gaps = 42/348 (12%)

Query: 1   MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV 60
           MDMAKA SVSKTIEQ+VTH EQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV
Sbjct: 1   MDMAKAISVSKTIEQLVTHGEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV 60

Query: 61  GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEG- 119
           GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEG 
Sbjct: 61  GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGY 120

Query: 120 -----------------------------------------EILNEYAMKLKTVTEVLSK 138
                                                    EILNEYAMKL TVTEVLSK
Sbjct: 121 GSDLVVSDAQVFDWCHRLFLRVFPVHQRRLNLWPQHPPEFSEILNEYAMKLTTVTEVLSK 180

Query: 139 AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV 198
           AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV
Sbjct: 181 AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV 240

Query: 199 EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE 258
           EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE
Sbjct: 241 EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE 300

Query: 259 PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA 306
           PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
Sbjct: 301 PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA 348

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357478365|ref|XP_003609468.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355510523|gb|AES91665.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255585999|ref|XP_002533669.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223526437|gb|EEF28715.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217073944|gb|ACJ85332.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388503360|gb|AFK39746.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807253|ref|NP_001242103.1| uncharacterized protein LOC100793145 [Glycine max] gi|255639064|gb|ACU19832.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225446207|ref|XP_002263617.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|147790901|emb|CAN77231.1| hypothetical protein VITISV_002774 [Vitis vinifera] gi|296084536|emb|CBI25557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484721|ref|XP_003633149.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784777|emb|CAN68790.1| hypothetical protein VITISV_001365 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388511034|gb|AFK43583.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.581 0.511 0.544 4.8e-66
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.581 0.511 0.550 2.3e-64
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.722 0.633 0.478 1.4e-48
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.712 0.624 0.433 3.8e-46
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.535 0.464 0.426 8.6e-45
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.607 0.522 0.388 1.4e-44
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.607 0.519 0.365 1.2e-43
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.555 0.467 0.442 8.5e-43
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.532 0.457 0.408 4.6e-42
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.526 0.433 0.407 1.1e-40
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 538 (194.4 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 97/178 (54%), Positives = 131/178 (73%)

Query:   120 EILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHG 179
             E L+EY MK + V E   KA+A+SL LEE SFL+ +G+ A +  RFN YPPC  PD V G
Sbjct:   162 ETLHEYTMKQRIVIEQFFKAMARSLELEENSFLDMYGESATLDTRFNMYPPCPSPDKVIG 221

Query:   180 VKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPM 239
             VKPH D S IT+LL D++V GLQ + DGKWY+ P++P  +++N+GDQM+IM+NGIYKSP+
Sbjct:   222 VKPHADGSAITLLLPDKDVGGLQFQKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPV 281

Query:   240 HRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKG 297
             HRVVTN EK RIS+A F  P  + EI PV++L+ E RP+LY+ V+ Y  + ++ YQ+G
Sbjct:   282 HRVVTNREKERISVATFCIPGADKEIQPVNELVSEARPRLYKTVKKYVELYFKYYQQG 339
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_152000026
hypothetical protein (347 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-94
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-65
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 8e-65
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-63
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 8e-54
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-52
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-50
PLN02947374 PLN02947, PLN02947, oxidoreductase 5e-48
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-46
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-46
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 8e-46
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-44
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-39
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-37
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-36
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-36
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-35
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-33
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-33
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-32
PLN02485329 PLN02485, PLN02485, oxidoreductase 8e-31
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-29
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-28
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-28
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-20
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-18
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 8e-15
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  283 bits (725), Expect = 1e-94
 Identities = 143/335 (42%), Positives = 194/335 (57%), Gaps = 50/335 (14%)

Query: 11  KTIEQMVTHSEQPSSGFIVKETKFGSIESSP-----PLGPFPVIDMSL-FSSQEHVGTEL 64
           KT++++V   E     ++   T  G  E  P     P    P ID+SL  SS +    EL
Sbjct: 7   KTVQEVVAAGEGLPERYLHTPT--GDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREEL 64

Query: 65  EKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEG----- 119
            KL S+LS+ G  QV+ HG++++FLD++ ++  +FF LP EEKQK AR +  I+G     
Sbjct: 65  SKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDM 124

Query: 120 -------------------------------------EILNEYAMKLKTVTEVLSKAIAK 142
                                                E L+EY MK + V E   KA+A+
Sbjct: 125 ILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMAR 184

Query: 143 SLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQ 202
           SL LEE  FL  +G+ A M  RFN YPPC RPD V GVKPH D S  T+LL D++VEGLQ
Sbjct: 185 SLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQ 244

Query: 203 IRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPE 262
              DGKWY+ P++P  +++N+GDQM+IM+NGIYKSP+HRVVTN EK RIS+A F  P  +
Sbjct: 245 FLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGAD 304

Query: 263 NEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKG 297
            EI PVD L+ E RP+LY+ V+ Y  + ++ YQ+G
Sbjct: 305 KEIQPVDGLVSEARPRLYKTVKKYVELFFKYYQQG 339

Length = 348
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.83
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.67
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.21
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.7
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.03
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.54
TIGR02466201 conserved hypothetical protein. This family consis 86.69
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 83.55
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=9.5e-71  Score=519.35  Aligned_cols=296  Identities=38%  Similarity=0.641  Sum_probs=266.0

Q ss_pred             HhHHHHHh--CCCCCCCCCccCCCCCCCCC-CCCCCCCcceeecCCCCCCChhHHHHHHHHHhhhcccEEEEecCCCChH
Q 021884           11 KTIEQMVT--HSEQPSSGFIVKETKFGSIE-SSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDS   87 (306)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~lPvIDl~~l~~~~~~~~~~~~l~~A~~~~GfF~l~nhGi~~~   87 (306)
                      +.|+.++.  ++++||++||+++++.++.. ++...++||+|||+.+.+++.+++++++|.+||++||||||+||||+.+
T Consensus        15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~   94 (357)
T PLN02216         15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSS   94 (357)
T ss_pred             hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHH
Confidence            66899986  68999999999999886542 2222248999999999876655678999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHhhcccccccchh------------------------------------------HHHHHH
Q 021884           88 FLDRVREVAVEFFQLPAEEKQKHARAVNEIEG------------------------------------------EILNEY  125 (306)
Q Consensus        88 ~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~G------------------------------------------~~~~~y  125 (306)
                      +++++++.+++||+||.|+|+++...++.+.|                                          +.+++|
T Consensus        95 li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y  174 (357)
T PLN02216         95 FLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETY  174 (357)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHH
Confidence            99999999999999999999998543211111                                          789999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhHhhhcCCccceeeeeecCCCCCCCCCccccCCCCCCceEEEeeCCCCCceEEEe
Q 021884          126 AMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRV  205 (306)
Q Consensus       126 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~qd~~~~GLqV~~  205 (306)
                      +.+|.+++.+|+++|+++||+++++|.+.+.....+.||++|||||+.++..+|+++|||+|+||||+|++.++||||+.
T Consensus       175 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~  254 (357)
T PLN02216        175 SAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKK  254 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEE
Confidence            99999999999999999999999999998853356789999999999888899999999999999999954799999999


Q ss_pred             CCeEEEeccCCCeEEEEcchhHHHhcCCccCCCCceeecCCCCceEEEEEeecCCCCCeEeCCccccCCCCCCCCCChH-
Q 021884          206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVR-  284 (306)
Q Consensus       206 ~g~W~~v~~~~g~~vVnvGd~l~~lT~G~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~y~~~~-  284 (306)
                      +|+|+.|+|.||++|||+||+||+||||+|||+.|||+.++.++|||++||+.|+.|++|.|+++++++++|++|++++ 
T Consensus       255 ~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~  334 (357)
T PLN02216        255 DGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTT  334 (357)
T ss_pred             CCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCH
Confidence            9999999999999999999999999999999999999988888999999999999999999999999988999999999 


Q ss_pred             -HHHHHHHHhhhcCCcccccccC
Q 021884          285 -NYGAINYECYQKGLVALDTVRA  306 (306)
Q Consensus       285 -e~~~~~~~~~~~~~~~~~~~~~  306 (306)
                       ||++.++++...++..++.+|.
T Consensus       335 ~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        335 KEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHHHHHHhcccCCcchhhhhcC
Confidence             9999999999889999998874

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-30
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-30
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-29
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-29
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-08
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 4e-06
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 4e-06
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 131/251 (52%), Gaps = 50/251 (19%)
Query: 75  GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEG------------- 119
           G   ++ HG+    ++RV++   EFF L  EEK+K+A  +A  +I+G             
Sbjct: 77  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 120 -----------------------------EILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 150
                                        E  +EYA  L+ +   + KA++  L LE   
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 196
Query: 151 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 208
              + G  ++ L+Q++ N+YP C +P+L  GV+ HTD S +T +L +  V GLQ+  +GK
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 255
Query: 209 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 266
           W     +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I   
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 314
Query: 267 PVDQLIDEQRP 277
           P+ +++  + P
Sbjct: 315 PLPEMVSVESP 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-108
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-104
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-69
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-58
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-55
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  316 bits (813), Expect = e-108
 Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 41/278 (14%)

Query: 46  FPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAE 105
           FP+I +   +  E     +E +K +  + G F++V HG+    +D V ++    ++   E
Sbjct: 4   FPIISLDKVNGVER-AATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCME 62

Query: 106 EKQKHARAVNEIEG-----------------------------------EILNEYAMKLK 130
           ++ K   A   +EG                                   E++ ++A +L+
Sbjct: 63  QRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLE 122

Query: 131 TVTEVLSKAIAKSLNLEEYSFLNQF--GDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSG 188
            + E L   + ++L LE+    N F          + + YPPC +PDL+ G++ HTD  G
Sbjct: 123 KLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGG 182

Query: 189 ITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEK 248
           I +L QD +V GLQ+  DG+W  VP + H++VVNLGDQ++++TNG YKS MHRV+   + 
Sbjct: 183 IILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDG 242

Query: 249 LRISIAAFTEPEPENEIGPVDQLID---EQRPKLYRNV 283
            R+S+A+F  P  +  I P   L++   E+  ++Y   
Sbjct: 243 ARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKF 280
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.25
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.34
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.43
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 84.31
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 83.31
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 82.41
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 80.49
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.5e-69  Score=507.65  Aligned_cols=289  Identities=29%  Similarity=0.527  Sum_probs=258.3

Q ss_pred             HhHHHHHh-CCCCCCCCCccCCCCCCCCCC---CC---CCCCcceeecCCCCCCCh--hHHHHHHHHHhhhcccEEEEec
Q 021884           11 KTIEQMVT-HSEQPSSGFIVKETKFGSIES---SP---PLGPFPVIDMSLFSSQEH--VGTELEKLKSSLSSAGCFQVVG   81 (306)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~---~~~~lPvIDl~~l~~~~~--~~~~~~~l~~A~~~~GfF~l~n   81 (306)
                      ++|++|++ ++.+||++|||++++.+....   ..   .+.+||+|||+.+.+++.  +.+++++|.+||++||||||+|
T Consensus         5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n   84 (356)
T 1gp6_A            5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   84 (356)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            67999998 899999999999887664322   11   123799999999976553  4668999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcCCCHHHHhhcccccc--cchh----------------------------------------
Q 021884           82 HGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVN--EIEG----------------------------------------  119 (306)
Q Consensus        82 hGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~--~~~G----------------------------------------  119 (306)
                      |||+.++++++++.+++||+||.|+|+++.....  ++.|                                        
T Consensus        85 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~  164 (356)
T 1gp6_A           85 HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD  164 (356)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTT
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchh
Confidence            9999999999999999999999999999865321  1111                                        


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhhhcC--CccceeeeeecCCCCCCCCCccccCCCCCCceEEEeeC
Q 021884          120 --EILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGD--QALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQD  195 (306)
Q Consensus       120 --~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~--~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~qd  195 (306)
                        +.+++|++.|.+++.+|+++|+++||+++++|.+.+..  .+.+.+|++||||++.++..+|+++|||+|+||||+||
T Consensus       165 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd  244 (356)
T 1gp6_A          165 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  244 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEc
Confidence              78999999999999999999999999999999998842  46788999999999988888999999999999999999


Q ss_pred             CCCCceEEEeCCeEEEeccCCCeEEEEcchhHHHhcCCccCCCCceeecCCCCceEEEEEeecCCCCC-eEeCCccccCC
Q 021884          196 REVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPEN-EIGPVDQLIDE  274 (306)
Q Consensus       196 ~~~~GLqV~~~g~W~~v~~~~g~~vVnvGd~l~~lT~G~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~pl~~~~~~  274 (306)
                       .++||||+++|+|++|+|.||++|||+||+||+||||+|||+.|||+.+++++|||++||+.|+.|+ +|.|+++++++
T Consensus       245 -~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~  323 (356)
T 1gp6_A          245 -MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  323 (356)
T ss_dssp             -SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             -CCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCC
Confidence             7999999999999999999999999999999999999999999999998888999999999999999 99999999998


Q ss_pred             CCCCCCCChH--HHHHHHHHhhhcCCcc
Q 021884          275 QRPKLYRNVR--NYGAINYECYQKGLVA  300 (306)
Q Consensus       275 ~~~~~y~~~~--e~~~~~~~~~~~~~~~  300 (306)
                      ++|++|++++  ||++.++++..+|+..
T Consensus       324 ~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          324 ESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             SSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCccCCCccHHHHHHHHHHhccCcchh
Confidence            8999999999  9999999887776554
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-51
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-48
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-40
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-21
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-08
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  169 bits (428), Expect = 3e-51
 Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 41/278 (14%)

Query: 46  FPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAE 105
           FP+I +   +  E   T +E +K +  + G F++V HG+    +D V ++    ++   E
Sbjct: 3   FPIISLDKVNGVERAAT-MEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCME 61

Query: 106 EKQKHARAVNEIEG-----------------------------------EILNEYAMKLK 130
           ++ K   A   +EG                                   E++ ++A +L+
Sbjct: 62  QRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLE 121

Query: 131 TVTEVLSKAIAKSLNLEEYSFLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSG 188
            + E L   + ++L LE+    N F          + + YPPC +PDL+ G++ HTD  G
Sbjct: 122 KLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGG 181

Query: 189 ITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEK 248
           I +L QD +V GLQ+  DG+W  VP + H++VVNLGDQ++++TNG YKS MHRV+   + 
Sbjct: 182 IILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDG 241

Query: 249 LRISIAAFTEPEPENEIGPVDQLID---EQRPKLYRNV 283
            R+S+A+F  P  +  I P   L++   E+  ++Y   
Sbjct: 242 ARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKF 279
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.42
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 86.75
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-68  Score=499.10  Aligned_cols=283  Identities=30%  Similarity=0.539  Sum_probs=254.5

Q ss_pred             HhHHHHHh-CCCCCCCCCccCCCCCCCCC------CCCCCCCcceeecCCCCCCCh--hHHHHHHHHHhhhcccEEEEec
Q 021884           11 KTIEQMVT-HSEQPSSGFIVKETKFGSIE------SSPPLGPFPVIDMSLFSSQEH--VGTELEKLKSSLSSAGCFQVVG   81 (306)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~lPvIDl~~l~~~~~--~~~~~~~l~~A~~~~GfF~l~n   81 (306)
                      ..||+||+ |+.+||++|||++++.+...      .+.+..+||||||+.+.+++.  +++++++|.+||+++|||||+|
T Consensus         4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~n   83 (349)
T d1gp6a_           4 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   83 (349)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             cchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence            57999997 99999999999999987641      123333899999999987764  3578999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcCCCHHHHhhccccc-c-cchh----------------------------------------
Q 021884           82 HGMSDSFLDRVREVAVEFFQLPAEEKQKHARAV-N-EIEG----------------------------------------  119 (306)
Q Consensus        82 hGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~-~-~~~G----------------------------------------  119 (306)
                      |||+.++++++++.+++||+||.|+|++|.... . .+.|                                        
T Consensus        84 HGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~  163 (349)
T d1gp6a_          84 HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD  163 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTT
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccch
Confidence            999999999999999999999999999996532 1 1110                                        


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhhhc--CCccceeeeeecCCCCCCCCCccccCCCCCCceEEEeeC
Q 021884          120 --EILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQD  195 (306)
Q Consensus       120 --~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~--~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTll~qd  195 (306)
                        +.+++|+..|.+++..|+++++++||+++++|.+.+.  ....+.+|++|||+++.+...+|+++|||+|+||||+|+
T Consensus       164 f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~  243 (349)
T d1gp6a_         164 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  243 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEecc
Confidence              7899999999999999999999999999999988774  335678999999999988889999999999999999999


Q ss_pred             CCCCceEEEeCCeEEEeccCCCeEEEEcchhHHHhcCCccCCCCceeecCCCCceEEEEEeecCCCCCeE-eCCccccCC
Q 021884          196 REVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI-GPVDQLIDE  274 (306)
Q Consensus       196 ~~~~GLqV~~~g~W~~v~~~~g~~vVnvGd~l~~lT~G~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~pl~~~~~~  274 (306)
                       .++||||+.+|+|++|++.+|++|||+||+|++||||+|+|++|||+.+++++|||++||++|+.|++| .|+++|+++
T Consensus       244 -~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~  322 (349)
T d1gp6a_         244 -MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  322 (349)
T ss_dssp             -SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             -CCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCC
Confidence             899999999999999999999999999999999999999999999999888999999999999999865 899999999


Q ss_pred             CCCCCCCChH--HHHHHHHHhh
Q 021884          275 QRPKLYRNVR--NYGAINYECY  294 (306)
Q Consensus       275 ~~~~~y~~~~--e~~~~~~~~~  294 (306)
                      ++|++|+|++  ||++.++...
T Consensus       323 ~~p~~y~~~t~~e~~~~rl~~~  344 (349)
T d1gp6a_         323 ESPAKFPPRTFAQHIEHKLFGK  344 (349)
T ss_dssp             SSCCSSCCEEHHHHHHHHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHHhcc
Confidence            9999999999  9999988643
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure