Citrus Sinensis ID: 021974

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMNNELNSTWHGLLNSPLM
Secondary Structure (PSIPRED)
ccccccHHHHccccccccHHcccHHHHcccccccccccccccccccccccEEEEccccccccHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccEEEEccccccccccccccEcccccccccccccccccccccEEEccccEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdassgqhqeMATHSLESMLVCSKaqqerkprpqpeqalkcprcdstntkfcyynnyslsqpryfckscrrywtkggtlrnvpvgggcrknkrsssssskrsqdqplmssntspltnfpplsydtnDLSLAFARLQKqnggqlgfddqhdfsilgnpvsshcdilgnpsissstsatttPAFLDALRSGFLDTHNNFQNLyygfgnansmgevdhhhhhhlnhnhdhgasaemlmpfgdhqmsatnaTTTAVTVTTMKQELcnsresenskvlwgfpwqlnnadasmnnelnstwhgllnsplm
Flexible Loop (DISEMBL)
mdassgqhqemATHSLESMLVCSKAQQerkprpqpeqalkcprcdstNTKFCYYNNYSLSQPRYFCKSCRRYWTKggtlrnvpvgggcrknkrsssssskrsqdqplmssntspltnfpPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMNNELNstwhgllnsplm
Low Complexity Region (SEG)
MDASSGQHQEMATHSLESMLVCSkaqqerkprpqpeqaLKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCrknkrsssssskrsQDQPLMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVSSHCDILGNPsissstsatttPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVdhhhhhhlnhnhdhGASAEMLMPFGDHQMSatnatttavtvttMKQELCNSRESENSKVLWGFPWQLNNADASMNNELNSTWHGLLNSPLM
Disordered region (IsUnstruct)
*****************************************PRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG****************************************DLSLAFARLQK*NGGQLGFDDQHDFSILGNPVSSHCDILG************TPAFLDALRSGFLDTHNNFQNLYYGFG*****************************************************************KVLWGFPWQLNNAD**********W*********
Disordered Region (DISOPRED)
****************************************CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLR***************************************************************************************************************************************************************************************************FPWQLNNADASMNNELNSTWHGLLNSPL*
Disordered Region (DISEMBL)
*************HSLESMLVC******************CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG************************NTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMNNELNSTWHGLLNSPLM
Disordered Region (DISPRO)
************************************QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVG*******************************************SLAFA*L*KQNGGQLGFDDQHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGD****************************ENSKVLWGFPWQLNNADASMNNELNSTWHGLLNSP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMNNELNSTWHGLLNSPLM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q84TE9	257	Dof zinc finger protein D	yes	no	0.401	0.474	0.615	6e-37
Q8LE43	288	Dof zinc finger protein D	no	no	0.812	0.857	0.364	1e-36
Q9M1E6	245	Dof zinc finger protein D	no	no	0.453	0.563	0.515	2e-33
O24463	328	Dof zinc finger protein P	N/A	no	0.223	0.207	0.852	1e-32
Q8LAP8	342	Dof zinc finger protein D	no	no	0.217	0.192	0.803	1e-29
Q9M2U1	323	Dof zinc finger protein D	no	no	0.217	0.204	0.803	2e-28
Q9LZ56	399	Dof zinc finger protein D	no	no	0.200	0.152	0.836	2e-28
Q43385	296	Dof zinc finger protein D	no	no	0.625	0.641	0.369	4e-28
O80928	330	Dof zinc finger protein D	no	no	0.197	0.181	0.816	6e-28
O82155	194	Dof zinc finger protein D	no	no	0.302	0.474	0.642	3e-27

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  154 bits (390), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 97/130 (74%), Gaps = 8/130 (6%)

Query: 23  SKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNV 82
           S A    +P+P PE AL+CPRCDSTNTKFCYYNNYSL+QPRYFCKSCRRYWTKGGTLRN+
Sbjct: 40  SPATAVTRPQP-PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNI 98

Query: 83  PVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDTN----DLSLAFARLQKQ 138
           PVGGGCRKNKRS+SS+++  +  P  +S+   + +    +  +N    DLSLAFA L KQ
Sbjct: 99  PVGGGCRKNKRSTSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQ 158

Query: 139 NGG---QLGF 145
           + G   QLGF
Sbjct: 159 HPGSSSQLGF 168

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 158/335 (47%), Gaps = 88/335 (26%)

Query: 8   HQEMATHSLESMLVCSKAQQERKPRPQPE-------------QALKCPRCDSTNTKFCYY 54
            QE++  +LE++LV S        +   E             +A  CPRC+S NTKFCYY
Sbjct: 4   EQEISNETLETILVSSTKGSNNNNKKMEEEMKKKVSRGELGGEAQNCPRCESPNTKFCYY 63

Query: 55  NNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSP 114
           NNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCR+NKRSSSS+  ++ +   ++ +T P
Sbjct: 64  NNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTDP 123

Query: 115 L-----TNFPPLSYDTN---DLSLAFARLQK----QNGGQLGFDDQHDFSILGNPVSSHC 162
           L     T  PP S+  +   DL+LAFA LQK           F    D SI GN   S  
Sbjct: 124 LQNPLITGMPPSSFGYDHSIDLNLAFATLQKHHLSSQATTPSFGFGGDLSIYGN---STN 180

Query: 163 DILGNPSISSSTSATTTPAFLDALRSGFLDTHNNFQNLYYGF--GNANSMGEVDHHHHHH 220
           D+                     +  G   T+NN  +L YGF  GN N+           
Sbjct: 181 DV--------------------GIFGGQNGTYNN--SLCYGFMSGNGNN----------- 207

Query: 221 LNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQL 280
            N N    AS   +   G+ +           +                SKV WGFPWQ+
Sbjct: 208 -NQNEIKMASTLGMSLEGNERKQENVNNNNNNSENP-------------SKVFWGFPWQM 253

Query: 281 NNADASMNNELN----------STW-HGLLNSPLM 304
               A +  E++          S+W +GLLN+PL+
Sbjct: 254 TGDSAGVVPEIDPGRESWNGMVSSWNNGLLNTPLV 288

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 102/163 (62%), Gaps = 25/163 (15%)

Query: 1   MDASSGQHQEMATHSLESMLVCSKAQQERKP----RPQP-EQALKCPRCDSTNTKFCYYN 55
           MD SS     M   S  +       Q ++KP    RP P EQ+L+CPRCDSTNTKFCYYN
Sbjct: 1   MDYSSMHQNVMGVSSCST----QDYQNQKKPLSATRPAPPEQSLRCPRCDSTNTKFCYYN 56

Query: 56  NYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSS-SKRSQDQPLMSSNTSP 114
           NYSLSQPRYFCKSCRRYWTKGG LRN+P+GG  RK+KRSSS++ S R+  +P M+ +   
Sbjct: 57  NYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSATKSLRTTPEPTMTHDGK- 115

Query: 115 LTNFPPLSYDTN---------DLSLAFARLQKQNGG---QLGF 145
             +FP  S+  N         +L LA+A L KQ  G    LGF
Sbjct: 116 --SFPTASFGYNNNNISNEQMELGLAYALLNKQPLGVSSHLGF 156

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 28  ERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 87
           ERKPRPQ  +ALKCPRCDS NTKFCYYNNYS+SQPRYFCK+CRRYWT GGTLRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 88  CRKNKRSS 95
           CRKNK +S
Sbjct: 109 CRKNKHAS 116

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 61/66 (92%)

Query: 28  ERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 87
           ERK RP+ +QA+ CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 88  CRKNKR 93
            RKNKR
Sbjct: 102 SRKNKR 107

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 60/66 (90%)

Query: 33  PQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNK 92
           P PE AL CPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG+LRNVPVGGG R+NK
Sbjct: 70  PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNK 129

Query: 93  RSSSSS 98
           RS S S
Sbjct: 130 RSKSRS 135

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 33  PQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNK 92
           P PE ALKCPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LR+VPVGGGCR+NK
Sbjct: 89  PLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNK 148

Query: 93  R 93
           R
Sbjct: 149 R 149

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 123/238 (51%), Gaps = 48/238 (20%)

Query: 27  QERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 86
           + RK RPQ  + + CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNVPVGG
Sbjct: 64  ETRKARPQ--EKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 121

Query: 87  GCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNF-PPLSYDTNDLSLAFARLQKQNGGQLGF 145
             RKNKRSS+         PL S +   L +  PP+ + +                Q+  
Sbjct: 122 SSRKNKRSST---------PLASPSNPKLPDLNPPILFSS----------------QIPN 156

Query: 146 DDQHDFSILGNPVSSH-----CDILGNPSISSSTSATTTPA-FLDALRSGFLDTHNNFQN 199
               D ++L  PV         ++L +  +SS    T  P   +D+  +  L +   F  
Sbjct: 157 KSNKDLNLLSFPVMQDHHHHALELLRSNGVSSRGMNTFLPGQMMDS--NSVLYSSLGFPT 214

Query: 200 LY-YGFGNANSMGEVDHHH---HHHLN-------HNHDHGASAEMLMPFGD-HQMSAT 245
           +  Y   N N    +DHH    H+ +N       +N D   ++ +L PF D  ++S+T
Sbjct: 215 MPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSST 272

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Arabidopsis thaliana (taxid: 3702)

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 58/60 (96%)

Query: 35  PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRS 94
           PE ALKCPRC+STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRNVPVGGGCR+N+R+
Sbjct: 85  PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRT 144

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 75/95 (78%), Gaps = 3/95 (3%)

Query: 12  ATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71
           A +  +SM++ + A+Q +   P+ EQ LKCPRCDS NTKFCYYNNY+LSQPR+FCK+CRR
Sbjct: 8   AAYYHQSMMMTT-AKQNQPELPEQEQ-LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRR 65

Query: 72  YWTKGGTLRNVPVGGGCRK-NKRSSSSSSKRSQDQ 105
           YWTKGG LRN+PVGGG RK NKRS SS S   ++Q
Sbjct: 66  YWTKGGALRNIPVGGGTRKSNKRSGSSPSSNLKNQ 100

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
255582965	284	zinc finger protein, putative [Ricinus c	0.884	0.947	0.667	1e-102
356542565	305	PREDICTED: dof zinc finger protein DOF2.	0.947	0.944	0.657	1e-101
297746199	272	unnamed protein product [Vitis vinifera]	0.858	0.959	0.650	6e-95
359479036	286	PREDICTED: dof zinc finger protein DOF2.	0.904	0.961	0.668	1e-90
356539098	310	PREDICTED: dof zinc finger protein DOF2.	0.957	0.938	0.628	1e-88
333795953	315	Dof-type zinc finger domain-containing p	0.930	0.898	0.625	1e-86
351726774	285	Dof11 [Glycine max] gi|112363376|gb|ABI1	0.898	0.957	0.544	4e-84
302398769	302	DOF domain class transcription factor [M	0.891	0.897	0.606	6e-84
37051125	296	DNA binding with one finger 2 protein [P	0.911	0.935	0.591	7e-84
333795955	304	Dof-type zinc finger domain-containing p	0.898	0.898	0.618	1e-82

>gi|255582965|ref|XP_002532252.1| zinc finger protein, putative [Ricinus communis] gi|223528040|gb|EEF30118.1| zinc finger protein, putative [Ricinus communis]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/301 (66%), Positives = 233/301 (77%), Gaps = 32/301 (10%)

Query: 19  MLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGT 78
           MLVCSK  QERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGT
Sbjct: 1   MLVCSKPHQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGT 60

Query: 79  LRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQ 138
           LRNVPVGGGCRKNKR    S+K++QD   ++ +T+PLT  PPLSYD+NDL+LAFARLQKQ
Sbjct: 61  LRNVPVGGGCRKNKR----STKKAQDHHQLNPHTNPLTGLPPLSYDSNDLTLAFARLQKQ 116

Query: 139 NGGQLGFDDQHDFSILGNPVSSHCDI-LGNPSISSSTSATTTPAFLDALRSGFLDTH-NN 196
           + GQLGFDD +DFSILGNP ++HCDI LGNP  +S  ++ +TP+FLDALRSGFLDT  NN
Sbjct: 117 SSGQLGFDD-NDFSILGNPSNAHCDIMLGNP--NSINTSASTPSFLDALRSGFLDTQNNN 173

Query: 197 FQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNATTTAVTVTT 256
           FQNLYYG+GN    G +D      + ++     S EM++P+ DHQ  +T+A T AVTVTT
Sbjct: 174 FQNLYYGYGN----GSID-----DVENSGGVCVSGEMMLPY-DHQDVSTSAATQAVTVTT 223

Query: 257 MKQELCNSRE---SENSKVLWGFPWQLN--------NADASMNNE--LNSTWHGLLNSPL 303
           MKQE CN RE   S NSKVL+GFPWQ+N        +   S NN    NSTWHGL+NSPL
Sbjct: 224 MKQEFCNGREDHNSNNSKVLFGFPWQINGNGISDLDSGRESWNNHGLGNSTWHGLINSPL 283

Query: 304 M 304
           M
Sbjct: 284 M 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542565|ref|XP_003539737.1| PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/321 (65%), Positives = 241/321 (75%), Gaps = 33/321 (10%)

Query: 1   MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 60
           MD SSGQHQ+M++ SLE+ML CSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 1   MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 60

Query: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR---SSSSSSKRSQDQPLMSSNTSPLTN 117
           QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR   SSSS+SKR QDQ   + N + L  
Sbjct: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSTSKRVQDQAF-TPNPNSLIG 119

Query: 118 FPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGN-PVSSHCD-ILGNPSISSSTS 175
            P LSYD++DL+LA ARLQKQ+ GQLG+D+ HD S+LGN   S+ CD ILG   +   +S
Sbjct: 120 LPSLSYDSSDLTLALARLQKQSCGQLGYDE-HDLSMLGNHHPSTPCDNILG---MHHHSS 175

Query: 176 ATTTPAFLDALRSGFLDTH--NNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEM 233
           ++T P FLDALRSGFL T   N  QNLYYG+GN + MGEVD       N N   G    M
Sbjct: 176 SSTNPGFLDALRSGFLGTQSSNMQQNLYYGYGNGD-MGEVD-------NGNASCGGEM-M 226

Query: 234 LMPFGDHQMSATNATTTAVTVTTMKQELCNSRE-SENSKVLWGFPWQLNNADASMN---- 288
           +MP+ D +MS   A+T AVTVTTMKQE+CN RE S  S+VLWGFPWQ NNAD +M     
Sbjct: 227 MMPYNDQEMSV--ASTQAVTVTTMKQEICNGREPSSESRVLWGFPWQFNNADTNMGELDS 284

Query: 289 -----NELNSTWHGLLNSPLM 304
                N +NS+WHGLLNSPLM
Sbjct: 285 GRASWNGINSSWHGLLNSPLM 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746199|emb|CBI16255.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 229/315 (72%), Gaps = 54/315 (17%)

Query: 1   MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 60
           MDASS Q QEM T SLESMLVCSKAQQERKPRP PEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 1   MDASSAQRQEMDTQSLESMLVCSKAQQERKPRP-PEQALKCPRCDSTNTKFCYYNNYSLS 59

Query: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR-SSSSSSKRSQDQPLMSSNTSPLTNFP 119
           QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR SSSSSSKR+QDQPL ++N +PL   P
Sbjct: 60  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRTQDQPL-TTNPNPLNVLP 118

Query: 120 PLSYDTNDLSLAFARLQKQNGGQLGFDD-QHDFSILGNPVSSHCDILGNPSISSSTSATT 178
           PL+YD+NDL+LAFARLQKQ GGQLG+DD  HD +++GNP ++HCD+LGN  +  +T  TT
Sbjct: 119 PLTYDSNDLTLAFARLQKQTGGQLGYDDHHHDLALMGNPNNTHCDVLGNQCV--NTCGTT 176

Query: 179 TPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFG 238
           TP  LDALR+ FL+T + + NLYYGF                                  
Sbjct: 177 TPGLLDALRTNFLETPSGYHNLYYGF---------------------------------- 202

Query: 239 DHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMN---------N 289
             +MS   ATTTAVTVTTMKQELC+ RE EN +VLWGFPWQ  N D SM          N
Sbjct: 203 --EMSG--ATTTAVTVTTMKQELCHGREGEN-RVLWGFPWQQLNPDGSMGEVDSGRESWN 257

Query: 290 ELNSTWHGLLNSPLM 304
            L S+WHGLLNSPLM
Sbjct: 258 GLASSWHGLLNSPLM 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479036|ref|XP_002284859.2| PREDICTED: dof zinc finger protein DOF2.1-like [Vitis vinifera]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 204/305 (66%), Positives = 233/305 (76%), Gaps = 30/305 (9%)

Query: 11  MATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCR 70
           M T SLESMLVCSKAQQERKPRP PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCR
Sbjct: 1   MDTQSLESMLVCSKAQQERKPRP-PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCR 59

Query: 71  RYWTKGGTLRNVPVGGGCRKNKR-SSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDTNDLS 129
           RYWTKGGTLRNVPVGGGCRKNKR SSSSSSKR+QDQPL ++N +PL   PPL+YD+NDL+
Sbjct: 60  RYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRTQDQPL-TTNPNPLNVLPPLTYDSNDLT 118

Query: 130 LAFARLQKQNGGQLGFDD-QHDFSILGNPVSSHCDILGNPSISSSTSATTTPAFLDALRS 188
           LAFARLQKQ GGQLG+DD  HD +++GNP ++HCD+LGN  +  +T  TTTP  LDALR+
Sbjct: 119 LAFARLQKQTGGQLGYDDHHHDLALMGNPNNTHCDVLGNQCV--NTCGTTTPGLLDALRT 176

Query: 189 GFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGDHQMSATNAT 248
            FL+T + + NLYYGFGN    GEV++                 M++P+   +MS   AT
Sbjct: 177 NFLETPSGYHNLYYGFGNGGMGGEVENGGV----------GGEHMVLPY--EEMSG--AT 222

Query: 249 TTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMN---------NELNSTWHGLL 299
           TTAVTVTTMKQELC+ RE EN +VLWGFPWQ  N D SM          N L S+WHGLL
Sbjct: 223 TTAVTVTTMKQELCHGREGEN-RVLWGFPWQQLNPDGSMGEVDSGRESWNGLASSWHGLL 281

Query: 300 NSPLM 304
           NSPLM
Sbjct: 282 NSPLM 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539098|ref|XP_003538037.1| PREDICTED: dof zinc finger protein DOF2.1 [Glycine max]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 236/323 (73%), Gaps = 32/323 (9%)

Query: 1   MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 60
           MD SSGQHQ+M++ SLE+ML CSKA QERKP PQPEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 1   MDPSSGQHQQMSSQSLENMLACSKAHQERKPTPQPEQALKCPRCDSTNTKFCYYNNYSLS 60

Query: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRS--QDQPLMSSNTSPLTNF 118
           QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSS     QDQ   + N +PLT  
Sbjct: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSTSKRVQDQAF-TPNVNPLTGL 119

Query: 119 PPL-SYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGN-PVSSHC--DILGNPSISSST 174
           P L SYD+NDL+LA ARLQKQ+ GQLG+DD HD S+LGN   ++ C  +ILG      S+
Sbjct: 120 PSLMSYDSNDLTLALARLQKQSCGQLGYDD-HDLSMLGNHHTNTPCGDNILG--MHHHSS 176

Query: 175 SATTTPAFLDALRSGFLDTHNN---FQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASA 231
           S++T P FLDALRSGFL T +N    QN+YYG+GN + MGEVD+     ++ + +     
Sbjct: 177 SSSTNPGFLDALRSGFLGTQSNNNMHQNMYYGYGNGD-MGEVDNGGGVGVSSSGEMMMMM 235

Query: 232 EMLMPF-GDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLN--------- 281
               P+  D +MS   A+T AVTVTTMKQE+CN RE    KVLWGFPWQLN         
Sbjct: 236 M---PYNNDQEMSI--ASTQAVTVTTMKQEICNGRE---QKVLWGFPWQLNGDTNMGELD 287

Query: 282 NADASMNNELNSTWHGLLNSPLM 304
           +  AS  N +NS+WHGLLNSPLM
Sbjct: 288 SGRASNWNGINSSWHGLLNSPLM 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333795953|gb|AEF97723.1| Dof-type zinc finger domain-containing protein [Prunus persica]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/336 (62%), Positives = 245/336 (72%), Gaps = 53/336 (15%)

Query: 1   MDASSGQ-HQEMATHSLESMLVCSKAQQ-----ERKPRPQPEQALKCPRCDSTNTKFCYY 54
           MD SSGQ HQEM+ HSL+ MLVCSK QQ     +RKPRPQPEQALKCPRCDSTNTKFCYY
Sbjct: 1   MDPSSGQQHQEMSAHSLD-MLVCSKTQQQQQQQDRKPRPQPEQALKCPRCDSTNTKFCYY 59

Query: 55  NNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSP 114
           NNYSLSQPRYFCK+CRRYWTKGGTLRNVPVGGGCRKNKRSSSSS +    QPL  ++ +P
Sbjct: 60  NNYSLSQPRYFCKACRRYWTKGGTLRNVPVGGGCRKNKRSSSSSKRSQDQQPLTPNSNNP 119

Query: 115 LTNFPPLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNP--VSSHCD--ILGNPSI 170
           L   P L YD+NDL+LAFARLQ+Q+ GQLGFDDQ   SILGNP   +SH D  ILGN  +
Sbjct: 120 L---PSLGYDSNDLTLAFARLQRQSCGQLGFDDQDHLSILGNPNNTASHGDHSILGNHGL 176

Query: 171 S-SSTSATTTPAFLDALRSGFLDTHN-NFQNLYYGFG---NANSMGEVDHHHHHHLNHNH 225
           + ++TSA   P F DALR+GFL+THN NFQN+YYGFG   N++S+GEV            
Sbjct: 177 NMNTTSAAAAPGFFDALRTGFLETHNGNFQNMYYGFGNGSNSSSLGEV------------ 224

Query: 226 DHGASAEMLMPFGDHQMSA-TNATTTAVTVTTMKQELCNSR--ESENSKVLWGFPWQLNN 282
           ++GA  EM    G H     TN+TTTAVTVTTMKQELCN+R  +SE+++VLWGFPWQL N
Sbjct: 225 ENGACGEM----GLHTFEEMTNSTTTAVTVTTMKQELCNARDPQSESNRVLWGFPWQL-N 279

Query: 283 ADASMN--------------NELNSTWHGLLNSPLM 304
            DA+ N              N L  +WHGLL+SPL+
Sbjct: 280 GDANNNMVSNECDSGRVESWNGLAPSWHGLLHSPLV 315

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726774|ref|NP_001236626.1| Dof11 [Glycine max] gi|112363376|gb|ABI16012.1| Dof11 [Glycine max]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/316 (54%), Positives = 220/316 (69%), Gaps = 43/316 (13%)

Query: 1   MDASSGQHQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 60
           M+ SSGQ Q+M++ S+E           +KP+P PEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 1   MNPSSGQPQQMSSQSVE-----------KKPKPHPEQALKCPRCDSTNTKFCYYNNYSLS 49

Query: 61  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPP 120
           QPRYFCKSCRRYWTKGGTLRNVPVGGGCRK +   SSS KR+Q Q L + N +PLT  P 
Sbjct: 50  QPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKR---SSSLKRAQGQTL-TPNLNPLTTLPH 105

Query: 121 LSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGNPVS-SHCDILGNPSISSSTSATTT 179
           LSYD+ND +LA AR QKQ+ GQLG++D+ D S LGNP + S CDILGN  ++ S++    
Sbjct: 106 LSYDSNDFTLAVARFQKQSSGQLGYNDR-DLSTLGNPTTGSFCDILGNSGMNPSSA---N 161

Query: 180 PAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASAEMLMPFGD 239
           P+FLDA+R+GFL+T N+ QNLY  +GN + +GEVD+ +   +      G S EM++P+  
Sbjct: 162 PSFLDAIRTGFLETQNHLQNLYCMYGNGD-LGEVDNGNSGVV------GVSGEMMLPY-- 212

Query: 240 HQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMN----------- 288
            Q+  +NATT +V+V  MKQE+C+ RE    +VL GFPWQ+ NAD ++            
Sbjct: 213 DQVIMSNATTQSVSV--MKQEMCSRREQSERRVLGGFPWQI-NADTNIGELDSGRTIASW 269

Query: 289 NELNSTWHGLLNSPLM 304
           N   ++WHG L SPLM
Sbjct: 270 NSFTNSWHGFLQSPLM 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398769|gb|ADL36679.1| DOF domain class transcription factor [Malus x domestica]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 234/320 (73%), Gaps = 49/320 (15%)

Query: 1   MDASSGQ--HQEMATHSLESMLVCSKAQQE---RKPRPQPEQALKCPRCDSTNTKFCYYN 55
           MD +SGQ  HQEM+  SL+ MLVCSK+QQ+   RKPRPQPEQALKCPRCDSTNTKFCYYN
Sbjct: 1   MDPASGQQQHQEMSAQSLD-MLVCSKSQQQQQDRKPRPQPEQALKCPRCDSTNTKFCYYN 59

Query: 56  NYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPL 115
           NYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR  SSS+KR+QDQPL + N++PL
Sbjct: 60  NYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR--SSSAKRAQDQPL-TPNSNPL 116

Query: 116 TNFPPLSYDTNDLSLAFARLQKQN--GGQLGFDDQHDFSILGNPVSS-HCDILGNPSISS 172
              P L YD+NDL+LAFARLQ+Q   GGQLGFDD    S+LGNP ++   +ILGNP+   
Sbjct: 117 ---PALGYDSNDLTLAFARLQRQQSCGGQLGFDDHDHISLLGNPTNAPDHNILGNPN--- 170

Query: 173 STSATTTPAFLDALRSGFLDTHN-NFQNLY-YGFGNANSMGEVDHHHHHHLNHNHDHGAS 230
                + P FLDALR+GFL+THN NFQNLY YG+GN N +GEV+           D G  
Sbjct: 171 -----SAPRFLDALRTGFLETHNGNFQNLYNYGYGNGN-LGEVE-----------DCGGG 213

Query: 231 AEMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNAD------ 284
             +  PF   +   TN+TTTAVTVTTMKQEL N++   +++VLWGFPWQ+N  D      
Sbjct: 214 MGIHHPF---EEGTTNSTTTAVTVTTMKQELFNAQSESSNRVLWGFPWQMNGGDHHSNMV 270

Query: 285 ASMNNELNS---TWHGLLNS 301
            + N+E +S   +W+G+ +S
Sbjct: 271 GNSNHEYDSGRESWNGIASS 290

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37051125|dbj|BAC81659.1| DNA binding with one finger 2 protein [Pisum sativum]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 230/323 (71%), Gaps = 46/323 (14%)

Query: 1   MDASSGQ-HQEMATHSLESMLVCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSL 59
           MD+SS Q HQ+M+  SLESML CSK +Q++K +PQPE ALKCPRCDS+NTKFCYYNNYSL
Sbjct: 1   MDSSSEQQHQQMSNQSLESMLTCSKGEQDKKAKPQPE-ALKCPRCDSSNTKFCYYNNYSL 59

Query: 60  SQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFP 119
           SQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSS S+R QDQ  + +N +P+T FP
Sbjct: 60  SQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSVSRRIQDQAFV-NNPNPVTCFP 118

Query: 120 PLSYDTNDLSLAFARLQKQNGGQLGFDDQHDFSILGN--------PVSSHCDILGNPSIS 171
            LSYD+NDL+LA ARLQK   GQLGFD +HDFSILGN          ++ C +L N  ++
Sbjct: 119 SLSYDSNDLTLALARLQK---GQLGFDHEHDFSILGNHANSNININTNTSCAVLNNHGMN 175

Query: 172 SSTSATTTPAFLDALRSGFLDTHNNFQNLYYGFGNANSMGEVDHHHHHHLNHNHDHGASA 231
            S++      F +AL    + + NN QNLYYG+GN + MGEVD+ +            S 
Sbjct: 176 HSSN---NHGFFEAL----MGSQNNVQNLYYGYGNRD-MGEVDNGN-----------VSG 216

Query: 232 EMLMPFGDHQMSATNATTTAVTVTTMKQELCNSRESENSKVLWGFPWQLNNADASMN--- 288
           EM++P+ DH+MS    TT AVTVTTMKQE+CN RE   S+VL GFPWQ NN D++M+   
Sbjct: 217 EMMLPY-DHEMSIA--TTQAVTVTTMKQEMCNVREQNESRVLLGFPWQFNNGDSNMDEID 273

Query: 289 -------NELNSTWHGLLNSPLM 304
                  N L S WHGLLNSPLM
Sbjct: 274 HSGRAGWNGLTSPWHGLLNSPLM 296

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333795955|gb|AEF97724.1| Dof-type zinc finger domain-containing protein [Prunus persica]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 201/325 (61%), Positives = 236/325 (72%), Gaps = 52/325 (16%)

Query: 11  MATHSLESMLVCSKAQQ-----ERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYF 65
           M+ HSL+ MLVCSK QQ     +RKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYF
Sbjct: 1   MSAHSLD-MLVCSKTQQQQQQQDRKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYF 59

Query: 66  CKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRSQDQPLMSSNTSPLTNFPPLSYDT 125
           CK+CRRYWTKGGTLRNVPVGGGCRKNKRSSSSS +    QPL  ++ +PL   P L YD+
Sbjct: 60  CKACRRYWTKGGTLRNVPVGGGCRKNKRSSSSSKRSQDQQPLTPNSNNPL---PSLGYDS 116

Query: 126 NDLSLAFARLQKQNGGQLGFDDQHDFSILGNP--VSSHCD--ILGNPSIS-SSTSATTTP 180
           NDL+LAFARLQ+Q+ GQLGFDDQ   SILGNP   +SH D  ILGN  ++ ++TSA   P
Sbjct: 117 NDLTLAFARLQRQSCGQLGFDDQDHLSILGNPNNTTSHGDHSILGNHGLNMNTTSAAAAP 176

Query: 181 AFLDALRSGFLDTHN-NFQNLYYGFG---NANSMGEVDHHHHHHLNHNHDHGASAEMLMP 236
            F DALR+GFL+THN NFQN+YYGFG   N++S+GEV            ++GA  EM   
Sbjct: 177 GFFDALRTGFLETHNGNFQNMYYGFGNGSNSSSLGEV------------ENGACGEM--- 221

Query: 237 FGDHQMSA-TNATTTAVTVTTMKQELCNSR--ESENSKVLWGFPWQLNNADASMN----- 288
            G H     TN+TTTAVTVTTMKQELCN+R  +SE+++VLWGFPWQL N DA+ N     
Sbjct: 222 -GLHTFEEMTNSTTTAVTVTTMKQELCNARDPQSESNRVLWGFPWQL-NGDANNNMVSNE 279

Query: 289 ---------NELNSTWHGLLNSPLM 304
                    N L  +WHGLL+SPL+
Sbjct: 280 CDSGRVESWNGLAPSWHGLLHSPLV 304

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.361	0.428	0.564	8.3e-40
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.381	0.402	0.554	3.5e-38
TAIR|locus:2085697	245	DOF6 "DOF transcription factor	0.351	0.436	0.512	3.8e-31
TAIR|locus:2170753	372	HCA2 "HIGH CAMBIAL ACTIVITY2"	0.332	0.271	0.5	8.4e-28
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.164	0.125	0.86	4e-26
TAIR|locus:2134658	294	AT4G00940 [Arabidopsis thalian	0.355	0.367	0.470	1.7e-25
TAIR|locus:2017567	194	DOF1 "DOF zinc finger protein	0.161	0.252	0.877	2.1e-25
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.157	0.148	0.854	1.2e-24
TAIR|locus:2155755	316	AT5G65590 [Arabidopsis thalian	0.338	0.325	0.526	1.2e-24
TAIR|locus:2094746	204	DOF2 "DOF zinc finger protein	0.269	0.401	0.609	1.6e-24

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 8.3e-40, Sum P(3) = 8.3e-40
 Identities = 66/117 (56%), Positives = 77/117 (65%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXX 98
             L+CPRCDSTNTKFCYYNNYSL+QPRYFCKSCRRYWTKGGTLRN+PVGGGC          
Sbjct:    55 LRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSA 114

Query:    99 XXXXQDQPLMSSNTSPLTNFPPLS-YDTN---DLSLAFARLQKQNGG---QLGFDDQ 148
                 +  P  +S+   + +    + Y  N   DLSLAFA L KQ+ G   QLGF  +
Sbjct:   115 ARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQHPGSSSQLGFHSE 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 71/128 (55%), Positives = 79/128 (61%)

Query:    41 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXXXX 100
             CPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC            
Sbjct:    50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFS 109

Query:   101 XXQDQPLMSSNTSPLTN-----FPPLS--YDTN-DLSLAFARLQKQN-GGQL---GFDDQ 148
                +   ++ +T PL N      PP S  YD + DL+LAFA LQK +   Q     F   
Sbjct:   110 KNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAFATLQKHHLSSQATTPSFGFG 169

Query:   149 HDFSILGN 156
              D SI GN
Sbjct:   170 GDLSIYGN 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2085697 DOF6 "DOF transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 60/117 (51%), Positives = 72/117 (61%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXX 98
             L+CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGG LRN+P+GG            
Sbjct:    40 LRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSAT 99

Query:    99 XXX-XQDQPLMSSN--TSPLTNFP----PLSYDTNDLSLAFARLQKQNGG---QLGF 145
                    +P M+ +  + P  +F      +S +  +L LA+A L KQ  G    LGF
Sbjct:   100 KSLRTTPEPTMTHDGKSFPTASFGYNNNNISNEQMELGLAYALLNKQPLGVSSHLGF 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2170753 HCA2 "HIGH CAMBIAL ACTIVITY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 55/110 (50%), Positives = 67/110 (60%)

Query:    40 KCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXX---XXXXX 96
             KCPRC+ST+TKFCYYNNYSLSQPRYFCK+CRRYWTKGGTLRN+PVGGGC           
Sbjct:    74 KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPSSSNS 133

Query:    97 XXXXXXQDQP--LMSSNTSPLTNFPPLSYDTNDLSLAFARLQKQNGGQLG 144
                     +P  ++++NTS L        +     L F+      GG +G
Sbjct:   134 SSSTSSGKKPSNIVTANTSDLMALAHSHQNYQHSPLGFSHF----GGMMG 179

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010067 "procambium histogenesis" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 43/50 (86%), Positives = 49/50 (98%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 88
             LKCPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LR+VPVGGGC
Sbjct:    95 LKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGC 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2134658 AT4G00940 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 56/119 (47%), Positives = 73/119 (61%)

Query:    41 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXX------XX 94
             CPRC+S+NTKFCYYNNYSL+QPRY CKSCRRYWT+GG+LRNVPVGGG             
Sbjct:    70 CPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKLPFPNSS 129

Query:    95 XXXXXXXXQD--QPLMSSNTSPLTNFPPLSYDTNDLSLAFAR-LQ-KQNGGQLG-FDDQ 148
                      D   P + ++++  +N      + NDLSL+F+  +Q K+  G  G F +Q
Sbjct:   130 TSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSSPMQDKRAQGHYGHFSEQ 188

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2017567 DOF1 "DOF zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 43/49 (87%), Positives = 47/49 (95%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 87
             LKCPRCDS NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRN+PVGGG
Sbjct:    33 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG 81

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 41/48 (85%), Positives = 46/48 (95%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 86
             + CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNVPVGG
Sbjct:    74 VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2155755 AT5G65590 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/112 (52%), Positives = 65/112 (58%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXX------ 92
             LKCPRC+S NTKFCYYNNYSLSQPR+FCKSCRRYWT+GG LRNVP+GGGC          
Sbjct:    41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSIKPN 100

Query:    93 XXXXXXXXXXQDQPLMSSNTSPLTNF-PPLSYDTNDLSLAFARLQKQNGGQL 143
                         Q   SS     + F PP +  T D  LA   L K N  QL
Sbjct:   101 SSMNTLPSSSSSQRFFSSIMEDSSKFFPPPT--TMDFQLAGLSLNKMNDLQL 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2094746 DOF2 "DOF zinc finger protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 50/82 (60%), Positives = 52/82 (63%)

Query:    39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXX 98
             LKCPRCDS NTKFCYYNNY+LSQPR+FCKSCRRYWTKGG LRNVPVGGG           
Sbjct:    29 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKRSTS 88

Query:    99 XXXXQDQPLMSSNTSPLTNFPP 120
                    P  SS      N  P
Sbjct:    89 SSSSASSPSNSSQNKKTKNPDP 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	2e-43
COG3677	129	COG3677, COG3677, Transposase and inactivated deri	0.004

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  142 bits (360), Expect = 2e-43
 Identities = 53/63 (84%), Positives = 59/63 (93%)

Query: 34 QPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR 93
          +P++ALKCPRCDS NTKFCYYNNY+L+QPRYFCK+CRRYWT GG LRNVPVGGG RKNKR
Sbjct: 1  KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 94 SSS 96
          SSS
Sbjct: 61 SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWT 74
          + CPRC S+N              RY CKSC   +T
Sbjct: 31 VNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFT 64

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	93.26
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.36
COG3677	129	Transposase and inactivated derivatives [DNA repli	92.02
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.98
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	88.83
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.83

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=8.6e-38  Score=236.65  Aligned_cols=63  Identities=92%  Similarity=1.704  Sum_probs=60.3

Q ss_pred             CCcccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccCCCCccCCCCCCC
Q 021974           34 QPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS   96 (304)
Q Consensus        34 ~pe~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPVGgG~RKnkrssS   96 (304)
                      +|++.++||||+|+||||||||||+++||||||++|+||||+||+||||||||||||+|+++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            367799999999999999999999999999999999999999999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=93.26  E-value=0.038  Score=47.70  Aligned_cols=34  Identities=26%  Similarity=0.819  Sum_probs=27.1

Q ss_pred             cCCCCCCCCCCceeeeecccC--CCCCcchhhhhcccc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYS--LSQPRYFCKSCRRYW   73 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys--~~QPRhfCksCrRYW   73 (304)
                      ...||||.|.+|+.  .+.+-  .++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            47999999999997  46664  447779999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.36  E-value=0.1  Score=36.57  Aligned_cols=28  Identities=43%  Similarity=0.985  Sum_probs=22.4

Q ss_pred             cCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR   71 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR   71 (304)
                      +..||+|.+.  +...+.+    ..+|.|+.|++
T Consensus        18 g~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   18 GFVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            4679999998  6555555    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=92.02  E-value=0.1  Score=44.21  Aligned_cols=36  Identities=36%  Similarity=0.731  Sum_probs=28.1

Q ss_pred             cCCCCCCCCCCceeeeecccCCCCCcchhhhhcccccc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTK   75 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~   75 (304)
                      ...||+|.+.+.+  =+.-+.....||.|++|++-|+.
T Consensus        30 ~~~cP~C~s~~~~--k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          30 KVNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             cCcCCCCCcccee--eECCccccccccccCCcCcceee
Confidence            3689999999922  25555555999999999998874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.98  E-value=0.094  Score=36.28  Aligned_cols=31  Identities=48%  Similarity=0.890  Sum_probs=21.6

Q ss_pred             cCCCCCCCCCCceeeeecccCCC-CCcchhhhhc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLS-QPRYFCKSCR   70 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~-QPRhfCksCr   70 (304)
                      .+.||+|.+++.-  |=|-.+.. ..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            4789999998721  12334333 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=88.83  E-value=0.4  Score=33.32  Aligned_cols=37  Identities=27%  Similarity=0.806  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCceeeeecccCCCCC---cchhhhhcccccc
Q 021974           39 LKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWTK   75 (304)
Q Consensus        39 l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT~   75 (304)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|..
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999988877766666665555   3999999999963

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.83  E-value=0.57  Score=32.33  Aligned_cols=36  Identities=31%  Similarity=0.857  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCceeeeecccCCCCCc---chhhhhccccc
Q 021974           39 LKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWT   74 (304)
Q Consensus        39 l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT   74 (304)
                      .+||.|...+.-|--.+..+..-|-   |.|.+|+.-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999988776555565555553   89999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	81.69
1tfi_A	50	Transcriptional elongation factor SII; transcripti	81.03

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=81.69  E-value=1.1  Score=31.44  Aligned_cols=38  Identities=21%  Similarity=0.682  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCCceeeeecccCCCCC---cchhhhhcccccc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWTK   75 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT~   75 (304)
                      ..+||+|...+..|--.+-.+...|   .|.|..|.--|+.
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            5789999985444433333344445   3999999999976

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=81.03  E-value=1  Score=31.70  Aligned_cols=37  Identities=22%  Similarity=0.669  Sum_probs=28.2

Q ss_pred             cCCCCCCCCCCceeeeecccCCCCCc---chhhhhccccc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWT   74 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT   74 (304)
                      ..+||+|...+..|--.+..+...|-   |.|..|..-|.
T Consensus         9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            56899999888777555555555553   89999998885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	89.85
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	88.54
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	82.51

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.85  E-value=0.15  Score=37.15  Aligned_cols=41  Identities=22%  Similarity=0.542  Sum_probs=32.0

Q ss_pred             cCCCCCCCCCCceeeeecccCCCCCc---chhhhhccccccCcc
Q 021974           38 ALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWTKGGT   78 (304)
Q Consensus        38 ~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT~GGt   78 (304)
                      ...||+|...+.-|-+.+-.+..-|-   |.|..|.-.|+.-.+
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            57999999988877666665555444   899999999998655

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.13  Score=35.21  Aligned_cols=37  Identities=22%  Similarity=0.676  Sum_probs=31.4

Q ss_pred             ccCCCCCCCCCCceeeeecccCCCCCc---chhhhhcccc
Q 021974           37 QALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYW   73 (304)
Q Consensus        37 ~~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYW   73 (304)
                      ..++||+|.+.+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            467999999999888777777777776   8999999988

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=82.51  E-value=0.45  Score=33.04  Aligned_cols=39  Identities=21%  Similarity=0.690  Sum_probs=29.9

Q ss_pred             ccCCCCCCCCCCceeeeecccCCCCCc---chhhhhcccccc
Q 021974           37 QALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWTK   75 (304)
Q Consensus        37 ~~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT~   75 (304)
                      ..++||+|...+.-|--.+-.+..-|-   |.|..|+--|..
T Consensus        14 ~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             ccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            457999999988887666655555554   899999999863