Citrus Sinensis ID: 021983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccHHHHHHHccccccccccccccccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHc
Coil and Loop (DISEMBL)
maatmdfyssrpvesscdpfgGELMEALEPfmksasastspslqQQQQHYQQGTVGLNNLNLFQIQQIQLQnqnfwpqqqqkshlypqglnflspkpvpmktvgcpppkpaklyrgvrqrhwgkwvaeirlpknrtrlwlgtFDTAEEAALAYDKAAYKLRGdfarlnfpnlrhngshiggefgeykplhssVDAKLAAICENLAETQklgtskkekqsnsaqkkrhrsgnkkvdvvegaggagvgvknecslsdgsagsspvsdltcqdlteppselelDAASENfmlqkypsyeidwASILS
Flexible Loop (DISEMBL)
maatmdfyssrpvessCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKlyrgvrqrhwgkwvaeirlpknrtrlwLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAEtqklgtskkekqsnsaqkkrhrsgnkkvdvvegaggagvgVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFmlqkypsyeidwasils
Low Complexity Region (SEG)
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLqqqqqhyqqGTVGlnnlnlfqiqqiqlqnqnfwpqqqqKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTaeeaalaydkaayklRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKvdvvegaggagvgvKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered region (IsUnstruct)
****************************************************GTVGLNNLNLFQIQQIQLQNQNFWPQ*****HLYPQGLNFL*****************AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENL**********************************************************************************FMLQKYPSYEIDWA****
Disordered Region (DISOPRED)
MAATMDFY************************************************************************************************************VRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL*************************************************************************************************DLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered Region (DISEMBL)
***************SCDPFGGELMEALEPFM******************QQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQ************************KVDVVEGAGGAGVGVKNECS**************TCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Disordered Region (DISPRO)
*AAT***YSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWP*********************************AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL***************PLHSSVDAKLAAICENLAETQ************************************************************QDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGTVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q8H1E4	334	Ethylene-responsive trans	yes	no	0.940	0.856	0.502	5e-74
Q9LM15	261	Ethylene-responsive trans	no	no	0.835	0.973	0.495	6e-60
O65665	272	Ethylene-responsive trans	no	no	0.835	0.933	0.462	9e-54
Q9SKW5	314	Ethylene-responsive trans	no	no	0.871	0.843	0.404	1e-46
Q9FJQ2	277	Ethylene-responsive trans	no	no	0.815	0.895	0.411	8e-43
Q9SIE4	261	Ethylene-responsive trans	no	no	0.733	0.854	0.418	1e-41
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.213	0.167	0.815	6e-29
Q9SKT1	336	Ethylene-responsive trans	no	no	0.230	0.208	0.767	7e-27
Q9M0J3	292	Ethylene-responsive trans	no	no	0.503	0.523	0.434	4e-23
Q9C7W2	335	Ethylene-responsive trans	no	no	0.375	0.340	0.556	1e-22

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 177/352 (50%), Positives = 212/352 (60%), Gaps = 66/352 (18%)

Query: 1   MAATMDFYS-SRPVESSCDPFGGELMEALEPFMKSA------------------SASTSP 41
           MAA M+ Y+ SR  + S    GGELM+AL PF+KS                   SA + P
Sbjct: 1   MAAAMNLYTCSRSFQDS----GGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLP 56

Query: 42  SLQQQ-------QQHYQQGT--------VGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLY 86
            L           Q +  G+        +GLNNL+  QI QIQ Q  +  P     ++  
Sbjct: 57  PLPGYYPDSTFLTQPFSYGSDLQQTGSLIGLNNLSSSQIHQIQSQIHHPLPPTHHNNNN- 115

Query: 87  PQGLNFLSPKPVPMKTVGCP----------PPKPAKLYRGVRQRHWGKWVAEIRLPKNRT 136
               N LSPKP+ MK  G            P KP KLYRGVRQRHWGKWVAEIRLP+NRT
Sbjct: 116 -SFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRT 174

Query: 137 RLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAK 196
           RLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGG+FGEYKPLHSSVDAK
Sbjct: 175 RLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAK 234

Query: 197 LAAICENLAETQKLGTSKKEKQSNSAQKKRHRSG----NKKVDVVEGAGGAGVGVKNECS 252
           L AIC+++AETQ     K++K + S++K+  +      ++KV   E +   G G      
Sbjct: 235 LEAICKSMAETQ-----KQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIG-GSPPVTE 288

Query: 253 LSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 304
             + +AGSSP+SDLT  D  EPP        +E F L+KYPSYEIDW SIL+
Sbjct: 289 FEESTAGSSPLSDLTFADPEEPPQ------WNETFSLEKYPSYEIDWDSILA 334

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 150/303 (49%), Positives = 174/303 (57%), Gaps = 49/303 (16%)

Query: 1   MAATMDFYSSRPVESSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGTVGLNNL 60
           M  +MDFYS++  + S DPFGGELMEAL PF+KS S  +S            G+    +L
Sbjct: 1   MTTSMDFYSNKTFQQS-DPFGGELMEALLPFIKSPSNDSSAFAFSLPAPISYGS----DL 55

Query: 61  NLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQR 120
           + F                   SH        LSPKPV MK  G    KP KLYRGVRQR
Sbjct: 56  HSF-------------------SH-------HLSPKPVSMKQTGTSAAKPTKLYRGVRQR 89

Query: 121 HWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIG 180
           HWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP+LRHN     
Sbjct: 90  HWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLRHN----- 144

Query: 181 GEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGA 240
               EY+PL SSVDAKL AIC+NLAE     T++K+ +S      R RS    V + E  
Sbjct: 145 ---DEYQPLQSSVDAKLEAICQNLAE-----TTQKQVRSTKKSSSRKRSSTVAVKLPEED 196

Query: 241 GGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWA 300
             +                SSP+S+LT  D     +E E+        L+KYPSYEIDW 
Sbjct: 197 YSSAGSSPLLTESYGSGGSSSPLSELTFGD-----TEEEIQPPWNENALEKYPSYEIDWD 251

Query: 301 SIL 303
           SIL
Sbjct: 252 SIL 254

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score =  210 bits (535), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/292 (46%), Positives = 170/292 (58%), Gaps = 38/292 (13%)

Query: 15  SSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGT-VGLNNLNLFQIQQIQLQNQ 73
           S+ DPF  ELM+AL+P+  +  +S SP+       + Q T +GLN L  +QI QIQ Q  
Sbjct: 9   SNTDPFQEELMKALQPYTTNTDSS-SPTYSNTVFGFNQTTSLGLNQLTPYQIHQIQNQ-- 65

Query: 74  NFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPK 133
                 Q+++ + P     L+PKPVPMK +        KLYRGVRQRHWGKWVAEIRLPK
Sbjct: 66  ----LNQRRNIISPN----LAPKPVPMKNMTA-----QKLYRGVRQRHWGKWVAEIRLPK 112

Query: 134 NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSV 193
           NRTRLWLGTFDTAEEAA+AYD AAYKLRG+FARLNFP  RH   + GG    + PLHSSV
Sbjct: 113 NRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSV 171

Query: 194 DAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSL 253
           DAKL  IC++L +T+ +     E +    + +   S              G    +E S 
Sbjct: 172 DAKLQEICQSLRKTEDIDLPCSETELFPPKTEYQES------------EYGFLRSDENSF 219

Query: 254 SDGS--AGSSPVSDLTC-QDLTEPPSELELDAASENFMLQKYPSYEIDWASI 302
           SD S    SSP S +T   D     S+   D    +F L+K+PS EIDW +I
Sbjct: 220 SDESHVESSSPESGITTFLDF----SDSGFDEIG-SFGLEKFPSVEIDWDAI 266

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 161/324 (49%), Gaps = 59/324 (18%)

Query: 21  GGELMEALEPFMKSASASTS-PSLQQQQQHYQQGTVGLNNLNLFQIQQIQL---QNQNFW 76
           GGELMEAL+PF KSAS S S P+       +      L + + +      L    +   +
Sbjct: 10  GGELMEALQPFYKSASTSASNPAFASSNDAFASAPNDLFSSSSYYNPHASLFPSHSTTSY 69

Query: 77  PQQQQKSHLYPQG--------------------------------LNFLSPKPVPMKTVG 104
           P     S  YP                                  LNF+ P      T  
Sbjct: 70  PDIYSGSMTYPSSFGSDLQQPENYQSQFHYQNTITYTHQDNNTCMLNFIEPSQPGFMTQP 129

Query: 105 CPPP----KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKL 160
            P      KPAKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDTAEEAALAYD+AA+KL
Sbjct: 130 GPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKL 189

Query: 161 RGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSN 220
           RGD ARLNFP LR+       + GEY P+ ++VDAKL AI   LAE +            
Sbjct: 190 RGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI---LAEPK------------ 234

Query: 221 SAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELEL 280
           +   K  R+  K+      +       +      +     SP SD+  Q++ + P E+  
Sbjct: 235 NQPGKTERTSRKRAKAAASSAEQPSAPQQHSGSGESDGSGSPTSDVMVQEMCQEP-EMPW 293

Query: 281 DAASENFMLQKYPSYEIDWASILS 304
           +   ENFML K PSYEIDWASILS
Sbjct: 294 N---ENFMLGKCPSYEIDWASILS 314

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJQ2|ERF57_ARATH Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 163/301 (54%), Gaps = 53/301 (17%)

Query: 20  FGGELMEALEPFMKSASAST----------SPSLQQQQQHY-----QQGTVGLNNLNLFQ 64
           +  E MEALEPFMK  S+S+          +P+             Q G +GLN L   Q
Sbjct: 8   YVDEFMEALEPFMKVTSSSSTSNSSNPKPLTPNFIPNNDQVLPVSNQTGPIGLNQLTPTQ 67

Query: 65  IQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGK 124
           I QIQ +      Q ++++     G + L+ KP  MK +     KP KLYRGVRQR WGK
Sbjct: 68  ILQIQTELHLRQNQSRRRA-----GSHLLTAKPTSMKKIDVAT-KPVKLYRGVRQRQWGK 121

Query: 125 WVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFG 184
           WVAEIRLPKNRTRLWLGTF+TA+EAALAYD+AA+K+RGD ARLNFP++           G
Sbjct: 122 WVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQ--------G 173

Query: 185 EYKPLHS-SVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGA 243
            YK + S S++AK+ +IC     +  L   + EKQ+ + +     S  +K    E   G 
Sbjct: 174 HYKQILSPSINAKIESIC----NSSDLPLPQIEKQNKTEEVLSGFSKPEK----EPEFGE 225

Query: 244 GVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFM--LQKYPSYEIDWAS 301
             G         G +GSSP SD+T  D +      +     E+F+  L KYPS EIDW +
Sbjct: 226 IYGC--------GYSGSSPESDITLLDFSS-----DCVKEDESFLMGLHKYPSLEIDWDA 272

Query: 302 I 302
           I
Sbjct: 273 I 273

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 141/258 (54%), Gaps = 35/258 (13%)

Query: 55  VGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLY 114
           +GLN L  +QI QIQ           Q +H      N LSP  + MK +     K   LY
Sbjct: 23  LGLNQLTPYQIHQIQ----------NQLNHRRSTISN-LSPNRIRMKNLTPSTSKTKNLY 71

Query: 115 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH 174
           RGVRQRHWGKWVAEIRLPKNRTRLWLGTF+TAE+AALAYD+AA++LRGD A+LNFPNL H
Sbjct: 72  RGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIH 131

Query: 175 NGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSG---- 230
                     +  PL SSVD KL AIC++L +T+++ +   + +  S      ++     
Sbjct: 132 E---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLP 182

Query: 231 ------NKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAAS 284
                  K+  +            +E SL D S      SD T  D ++  +E E   + 
Sbjct: 183 KAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSD--TEFEEIGS- 239

Query: 285 ENFMLQKYPSYEIDWASI 302
             F L+K+PS EIDW +I
Sbjct: 240 --FGLRKFPSVEIDWDAI 255

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 110 PAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNF 169
           P KLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+TAE+AA+AYD AAY LRG+FA LNF
Sbjct: 228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNF 287

Query: 170 PNLRH 174
           P+L+H
Sbjct: 288 PDLKH 292

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 3/73 (4%)

Query: 106 PPPKP---AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRG 162
           PP +P    KLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDTAEEAA+AYD+ A+KLRG
Sbjct: 176 PPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRG 235

Query: 163 DFARLNFPNLRHN 175
           + ARLNFP L  N
Sbjct: 236 ETARLNFPELFLN 248

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0J3|ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 15/168 (8%)

Query: 10  SRP---VESSCDPFGGELME-ALEPFMKSAS---ASTSPSLQQQQQHYQQGTVGLNNLNL 62
           SRP    +SS  P+  E    +L+P +++      S  P L+Q+Q    QG   + + + 
Sbjct: 40  SRPKPYFQSSSSPYSLEAFPFSLDPTLQNQQQQLGSYVPVLEQRQDPTMQGQKQMISFSP 99

Query: 63  FQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHW 122
            Q QQ Q     +W       +L P+G   +      M      P    KLYRGVRQR W
Sbjct: 100 QQQQQQQQYMAQYW---SDTLNLSPRGRMMMM-----MSQEAVQPYIATKLYRGVRQRQW 151

Query: 123 GKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 170
           GKWVAEIR P++R RLWLGTFDTAEEAA+AYD+ A+KLRG  A LNFP
Sbjct: 152 GKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7W2|ERF61_ARATH Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 109 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 168
           K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DTAE AA AYD+AAYKLRG++ARLN
Sbjct: 131 KKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLN 190

Query: 169 FPNLRHNGSHIG-GEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSA 222
           FPNL+     +G G+  +   L ++VD K+ +IC+ + + +   + K  K S++ 
Sbjct: 191 FPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSAT 245

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
428230424	376	ethylene-responsive element binding-fact	0.792	0.640	0.640	8e-82
225459344	367	PREDICTED: ethylene-responsive transcrip	0.953	0.790	0.513	3e-81
323650795	271	DREB1p [Hevea brasiliensis]	0.802	0.900	0.627	6e-81
356515802	302	PREDICTED: ethylene-responsive transcrip	0.921	0.927	0.570	3e-80
336109262	318	dehydration-responsive element binding p	0.927	0.886	0.541	4e-80
386646590	355	dehydration-responsive element-binding p	0.963	0.825	0.521	2e-78
70905563	256	putative AP2-binding protein [Jatropha c	0.733	0.871	0.663	6e-78
255545670	383	DNA binding protein, putative [Ricinus c	0.773	0.613	0.605	2e-77
224084692	247	AP2/ERF domain-containing transcription	0.75	0.923	0.629	1e-76
297839671	341	hypothetical protein ARALYDRAFT_476975 [	0.960	0.856	0.512	2e-73

>gi|428230424|gb|AFY98895.1| ethylene-responsive element binding-factor [Jatropha curcas]

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 173/270 (64%), Positives = 190/270 (70%), Gaps = 29/270 (10%)

Query: 54  TVGLNNLNLFQIQQIQ----LQNQN---FWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCP 106
           ++GLN+L   QI QIQ     QNQN   F     Q  H    GLNFL PKPVPMK VG P
Sbjct: 116 SIGLNHLTPTQIHQIQTQIHYQNQNGFNFQNFHTQNQH----GLNFLGPKPVPMKQVGSP 171

Query: 107 PPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFAR 166
           P KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFAR
Sbjct: 172 P-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFAR 230

Query: 167 LNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKR 226
           LNFPNLRH GSHI G FGEYKPLHSSVDAKL AIC++LAE+QK G  K EKQSNS+ KK+
Sbjct: 231 LNFPNLRHQGSHIEGSFGEYKPLHSSVDAKLQAICQSLAESQKQG-GKAEKQSNSSAKKK 289

Query: 227 HRSGNK--KVDVVEGAGGAGVGVKNEC----------SLSDGSAGSSPVSDLTCQDLTEP 274
              G      + V+ A      V ++C          + S+ S GSSP+SDLT  DL E 
Sbjct: 290 TSVGTTPATAEKVKEAKAPQQVVPDKCCKVETPSSVLTESEASGGSSPLSDLTFPDLEEA 349

Query: 275 PSELELDAASENFMLQKYPSYEIDWASILS 304
           P    LD  S NF L+KYPSYEIDWAS+LS
Sbjct: 350 P----LDVDSGNFNLEKYPSYEIDWASLLS 375

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459344|ref|XP_002285802.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform 1 [Vitis vinifera]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 194/378 (51%), Positives = 222/378 (58%), Gaps = 88/378 (23%)

Query: 1   MAATMDFYSSRPVES-SCDPFGGELMEALEPFMKSA------------------------ 35
           MA T+DFYSSRP++S SC   GGELMEALEPFMK+A                        
Sbjct: 1   MAPTVDFYSSRPLQSASC---GGELMEALEPFMKNASSTSPSSTLSPSSSPSTSSFYPSS 57

Query: 36  --------------SASTSPSLQQQ------QQHYQQGTVGLNNL--------------- 60
                         S ST+  + Q       Q     G +GLN+L               
Sbjct: 58  DFYSPISTQYPDGCSTSTTHVISQGFSSHDLQGFEHSGPIGLNHLTPSQIHQIQAQIQLQ 117

Query: 61  ----NLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRG 116
               ++  +      N    PQ QQ+     Q  NFLSPKP+PMK VG PP KP KLYRG
Sbjct: 118 QHHNHMPAVAAAASFNTQNLPQWQQRQ----QAPNFLSPKPIPMKQVGVPP-KPTKLYRG 172

Query: 117 VRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNG 176
           VRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH G
Sbjct: 173 VRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQG 232

Query: 177 SHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDV 236
           SHIGGEFG+YKPLHSSVDAKL AIC++LAETQK G   + K+S S  +    S ++ V V
Sbjct: 233 SHIGGEFGDYKPLHSSVDAKLQAICQSLAETQKQGKPTQGKKSRS--RAVAPSASQPVTV 290

Query: 237 VEGAGGAGVGVKNECSL----------SDGSAGSSPVSDLTCQDLTEPPSELELDAASEN 286
            E +  +  G + +C +          SDGS GSSP+SDLT  D  E   E     A EN
Sbjct: 291 SESSTLSEQGSE-DCKVEPTSSSMFTESDGSGGSSPLSDLTFPDDCE---EAPFYGAWEN 346

Query: 287 FMLQKYPSYEIDWASILS 304
           F LQKYPS EIDWA+I S
Sbjct: 347 FNLQKYPSNEIDWAAISS 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323650795|gb|ADX97444.1| DREB1p [Hevea brasiliensis]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 170/271 (62%), Positives = 190/271 (70%), Gaps = 27/271 (9%)

Query: 51  QQGTVGLNNLNLFQIQQIQ----LQNQNFWPQQQ---QKSHLYPQGLNFLSPKPVPMKTV 103
           Q  ++GL++L   QI QIQ    LQNQN +P Q    Q  H     LNFL PKP+PMK V
Sbjct: 11  QPSSIGLSHLTPCQIHQIQTQVHLQNQNGFPFQDYHVQNQHT----LNFLGPKPIPMKQV 66

Query: 104 GCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGD 163
           G PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGD
Sbjct: 67  GSPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGD 125

Query: 164 FARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQ 223
           FARLNFPNLRH GSHI G+FGEYKPLHSSVDAKL AIC++LAE+QK G  K EKQSNS+ 
Sbjct: 126 FARLNFPNLRHQGSHIKGKFGEYKPLHSSVDAKLQAICQSLAESQKQG-GKAEKQSNSSS 184

Query: 224 KKRHRSGNKKVDVVEGAGGAGVGVKNEC----------SLSDGSAGSSPVSDLTCQDLTE 273
            K+       V   + A        ++C          + S+GS GSSP+SDLT  D  E
Sbjct: 185 TKKKAQVGMTVQAAKEAEFQQKSTLDKCCKVETPSPVLTESEGSGGSSPLSDLTFPDFEE 244

Query: 274 PPSELELDAASENFMLQKYPSYEIDWASILS 304
            P    LD  S NF L+KYPSYEIDWAS+LS
Sbjct: 245 AP----LDVDSGNFNLEKYPSYEIDWASLLS 271

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515802|ref|XP_003526587.1| PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Glycine max]

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 185/324 (57%), Positives = 207/324 (63%), Gaps = 44/324 (13%)

Query: 1   MAATMDFYSSRP-VESSCDPFGGELMEALEPFMKSASASTSPSLQQQQQHYQQGT----- 54
           MAA MDFYSS P  +   DPF GELME LEPFMKS S +  PS       Y  G      
Sbjct: 1   MAALMDFYSSSPEFQLHSDPFRGELMEVLEPFMKSPSPNYFPSSPSLPNLYSNGLSSNTQ 60

Query: 55  -------------VGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMK 101
                        VGLN+L   QI QIQ Q Q    Q Q +S+     L+FL PKP+PMK
Sbjct: 61  SLIGFGQAQPTSLVGLNHLTPSQISQIQAQIQIQAQQHQNRSNT----LSFLGPKPIPMK 116

Query: 102 TVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLR 161
             G PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLR
Sbjct: 117 HAGMPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLR 175

Query: 162 GDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNS 221
           GDFARLNFPNLRH GS +GG+FGEYKPLHS+VDAKL AICE LAE QK G ++K      
Sbjct: 176 GDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEK-----P 230

Query: 222 AQKKRHRSGNKKVDVVEGAGGAGVGVKNECSL---SDGSAGSSPVSDLTCQDLTEPPSEL 278
            +K R +   K V   E          N C +   S  S GSSP+SDLT  D+    SE 
Sbjct: 231 PRKSRSKLAEKVVSDKEN--------NNSCKVEAASWSSEGSSPLSDLTFADV----SEA 278

Query: 279 ELDAASENFMLQKYPSYEIDWASI 302
           + +  S+N+ LQKYPSYEIDW S+
Sbjct: 279 QWEGDSDNYNLQKYPSYEIDWDSL 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336109262|gb|AEI16474.1| dehydration-responsive element binding protein [Lespedeza potaninii]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 183/338 (54%), Positives = 209/338 (61%), Gaps = 56/338 (16%)

Query: 1   MAATMDFYSSRPV--ESSCDPFGGELMEALEPFMKSASA--------------------- 37
           MAA MDFY+S     E   DPF GELME LEPFMKS S+                     
Sbjct: 1   MAAMMDFYNSTEFQFEHHTDPFRGELMEVLEPFMKSPSSTPSSSSSSSSSSYSPSPNNYF 60

Query: 38  -STSPSLQQQQQHY--------QQGTVGLNNLNLFQIQQIQ----LQNQNFWPQQQQKSH 84
            S+ P+     Q+             +GLN+L   QI QIQ    +QN N          
Sbjct: 61  PSSLPNFYSNTQNLIGFGQVQPTSSLLGLNHLTPSQISQIQAQIHVQNHNI--------- 111

Query: 85  LYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFD 144
                LN L PKP+PMK VG PP KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFD
Sbjct: 112 ---NSLNLLGPKPIPMKHVGMPP-KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFD 167

Query: 145 TAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENL 204
           TAEEAALAYDKAAYKLRGDFARLNFPNLRH GS +GG+FGEYKPLHSSVDAKL AICE L
Sbjct: 168 TAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGL 227

Query: 205 AETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEGAGGAGVGVKNECSLSDGSAGSSPVS 264
           AE QK G ++K+     ++ K   S  +K+D  E      V      + S+GS GSSP+S
Sbjct: 228 AELQKQGKNEKKPSK-KSRSKLAPSPPEKLDSSENK--VEVSSPPVTTESEGSEGSSPLS 284

Query: 265 DLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 302
           DLT  D++EP    + +  SENF L KYPSYEIDW S+
Sbjct: 285 DLTFADVSEP----QWEGDSENFNLHKYPSYEIDWDSL 318

Source: Lespedeza potaninii

Species: Lespedeza potaninii

Genus: Lespedeza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386646590|gb|AFJ14639.1| dehydration-responsive element-binding protein (DREB6), partial [Malus x domestica]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 191/366 (52%), Positives = 215/366 (58%), Gaps = 73/366 (19%)

Query: 1   MAATMDFYSSR-PVESSCDPFGGELMEALEPFMK---------------SASASTSP--- 41
           MA  MDFYS R  + SS DPF GELMEALEPFMK               S S S++P   
Sbjct: 1   MATAMDFYSGRSALHSSSDPFRGELMEALEPFMKSVSSSPPSSLPTTTASPSFSSAPLLP 60

Query: 42  ----------SLQQQQQHYQQG--------------------TVGLNNLN---------L 62
                     S   Q   Y  G                    ++GLN+L           
Sbjct: 61  SFPFTSYDFLSFPNQPNFYHDGCSTSSMTQVFSDGFFEQQPLSIGLNHLTSSQIHQIQAQ 120

Query: 63  FQIQQIQLQNQNFWPQ-QQQKSHLYPQGLNFLSPKPVPMKTVGCP--PPKPAKLYRGVRQ 119
            Q Q    Q Q  W    QQ S    + L+FLSPKP+PMK VG    PPKP KLYRGVRQ
Sbjct: 121 IQSQSQPQQPQISWDNYHQQVSQTTSRTLSFLSPKPIPMKQVGSAGSPPKPTKLYRGVRQ 180

Query: 120 RHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHI 179
           RHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD+AAYKLRGDFARLNFP+LRHNGS +
Sbjct: 181 RHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDEAAYKLRGDFARLNFPHLRHNGSVV 240

Query: 180 GGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKVDVVEG 239
           GGEFGEYKPLH+SVDAKL AIC  LAETQK G + K  + +SA   R  +       VE 
Sbjct: 241 GGEFGEYKPLHASVDAKLQAICGGLAETQKQGKAAKPAKRSSAAASRQPAPETLAVKVET 300

Query: 240 AGGAGVGVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENF-MLQKYPSYEID 298
           +           + S+GSAGSSP+SDLT  D TEP    E   ASE+  +L+KYPS EID
Sbjct: 301 SSPV-------MTDSEGSAGSSPLSDLTFGDSTEP---WENSGASESTAVLEKYPS-EID 349

Query: 299 WASILS 304
           WASI S
Sbjct: 350 WASIFS 355

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70905563|gb|AAZ14831.1| putative AP2-binding protein [Jatropha curcas]

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/241 (66%), Positives = 175/241 (72%), Gaps = 18/241 (7%)

Query: 76  WPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNR 135
           W Q  +  H  P  LNFL PKPVPMK VG PP KP KLYRGVRQRHWGKWVAEIRLPKNR
Sbjct: 21  WIQFPEFPHPKPTWLNFLGPKPVPMKQVGSPP-KPTKLYRGVRQRHWGKWVAEIRLPKNR 79

Query: 136 TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDA 195
           TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRH GSHI G FGEYKPLHSSVDA
Sbjct: 80  TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSHIEGSFGEYKPLHSSVDA 139

Query: 196 KLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNK--KVDVVEGAGGAGVGVKNEC-- 251
           KL AIC++LAE+QK G  K EKQSNS+ KK+   G      + V+ A      V ++C  
Sbjct: 140 KLQAICQSLAESQKQG-GKAEKQSNSSAKKKTSVGTTPATAEKVKEAKAPQQVVPDKCCK 198

Query: 252 --------SLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASIL 303
                   + S+ S GSSP+SDLT  DL E P    LD  S NF L+KYPSYEIDWAS+L
Sbjct: 199 VETPSSVLTESEASGGSSPLSDLTFPDLEEAP----LDVDSGNFNLEKYPSYEIDWASLL 254

Query: 304 S 304
           S
Sbjct: 255 S 255

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545670|ref|XP_002513895.1| DNA binding protein, putative [Ricinus communis] gi|223546981|gb|EEF48478.1| DNA binding protein, putative [Ricinus communis]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/274 (60%), Positives = 187/274 (68%), Gaps = 39/274 (14%)

Query: 53  GTVGLNNLNLFQIQQIQ----LQNQNFWPQQQQKSHLYPQGLNFLSPKPVPMKTVGCPPP 108
           G++GLN+L   QI QIQ    LQN  +     Q S      LNFLSPKP+PMK VG PP 
Sbjct: 125 GSIGLNHLTPTQIHQIQTQFHLQNHTYPLHHNQNS------LNFLSPKPIPMKQVGSPP- 177

Query: 109 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 168
           KP KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN
Sbjct: 178 KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLN 237

Query: 169 FPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHR 228
           FPNLRH GSHI G+FGEYKPLHS+VDAKL AICE+LA+      S  +KQS   +K   +
Sbjct: 238 FPNLRHQGSHIEGKFGEYKPLHSAVDAKLQAICESLAQ------SSSQKQSGKGEKNSTK 291

Query: 229 SGNKKVDVVEGAGG-------AGVGVKNEC----------SLSDGSAGS-SPVSDLTCQD 270
              K  +VV+             VGV+++C          + S+GS GS SP+SDLT  D
Sbjct: 292 KSKKTPEVVKEEAKPTQEQHEVAVGVEDKCCKVETQSPLLTESEGSGGSCSPLSDLTFPD 351

Query: 271 LTEPPSELELDAASENFMLQKYPSYEIDWASILS 304
             E P    LD  S NFML KYPSYEIDWAS+LS
Sbjct: 352 FEEAP----LDVDSSNFMLLKYPSYEIDWASLLS 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084692|ref|XP_002307390.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222856839|gb|EEE94386.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/262 (62%), Positives = 181/262 (69%), Gaps = 34/262 (12%)

Query: 54  TVGLNNLNLFQIQQIQLQNQNFWPQQQQKSHLY------PQGLNFLSPKPVPMKTVGCPP 107
           ++GLN+L   QI QIQ Q        Q  SH Y      PQ L FLSPKPVPMK +G P 
Sbjct: 9   SIGLNHLTPNQIHQIQTQIH------QNNSHSYLRTCQQPQTLKFLSPKPVPMKQMGTPS 62

Query: 108 PKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 167
            K  KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL
Sbjct: 63  -KSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL 121

Query: 168 NFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRH 227
           NFPNLRH GSHI    GEYKPLHSSVDAKL AICE+L  + +    K EK+SNS +    
Sbjct: 122 NFPNLRHQGSHI----GEYKPLHSSVDAKLQAICESLENSSQQKRGKVEKRSNSTK---- 173

Query: 228 RSGNKKVDVVEGAGGAGVGVKNEC-----SLSDGSAGSSPVSDLTCQDLTEPPSELELDA 282
               K+  +V G       VK+E      + SDGS GSSP+SDLT  D+ E P  LE D+
Sbjct: 174 ----KETSLVVGTQEEEPVVKSETPSPVLTESDGSGGSSPLSDLTFPDIEEAP--LEFDS 227

Query: 283 ASENFMLQKYPSYEIDWASILS 304
              NFMLQKYPSYEIDWASILS
Sbjct: 228 G--NFMLQKYPSYEIDWASILS 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839671|ref|XP_002887717.1| hypothetical protein ARALYDRAFT_476975 [Arabidopsis lyrata subsp. lyrata] gi|297333558|gb|EFH63976.1| hypothetical protein ARALYDRAFT_476975 [Arabidopsis lyrata subsp. lyrata]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 180/351 (51%), Positives = 211/351 (60%), Gaps = 59/351 (16%)

Query: 1   MAATMDFYSSRPVESSCDPFGG---ELMEALEPFMK-----------------SASASTS 40
           MAA M+ YSS     + D FGG   ELM+AL PF+K                 SASA + 
Sbjct: 1   MAAAMNLYSSSRTFQASDSFGGSGGELMDALVPFIKSVSDSPSSASAFLHPAASASAFSL 60

Query: 41  PSLQQQ-------QQHYQQGT--------VGLNNLNLFQIQQIQLQNQNFWPQQQQKSHL 85
           P L           Q +  G+        +GLNNL+  QIQQIQ Q  +  P     +  
Sbjct: 61  PPLPGYYPDSTFLTQPFSYGSDLQQTGSLIGLNNLSSSQIQQIQSQIHHPLPPTHHNNTF 120

Query: 86  YPQGLNFLSPKPVPMKTVGCP----------PPKPAKLYRGVRQRHWGKWVAEIRLPKNR 135
                N LSPKP+ MK  G            PPKP KLYRGVRQRHWGKWVAEIRLP+NR
Sbjct: 121 S----NLLSPKPLLMKQSGVAGSCFAYGSGVPPKPTKLYRGVRQRHWGKWVAEIRLPRNR 176

Query: 136 TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDA 195
           TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGG+FGEYKPLHSSVDA
Sbjct: 177 TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDA 236

Query: 196 KLAAICENLAETQKLG--TSKKEKQSNSAQKKRHRSGN--KKVDVVEGAGGAGVGVKNEC 251
           KL AIC+++AETQK    T   +K+S+S  +K+  S +  +K    E    +  G     
Sbjct: 237 KLEAICKSMAETQKQDKPTKASKKRSSSVTEKKVSSPDLSEKEVKAEEKSVSTAGSPPVT 296

Query: 252 SLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 302
              + +AGSSP+SDLT  D  EPP        +E F L+K+PSYEIDW SI
Sbjct: 297 EFEESTAGSSPLSDLTFADPEEPPQ------WNETFSLEKFPSYEIDWDSI 341

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.677	0.616	0.549	8.8e-63
TAIR|locus:2015061	261	AT1G22190 [Arabidopsis thalian	0.555	0.647	0.529	4.2e-49
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.611	0.683	0.439	4e-39
TAIR|locus:2171840	277	AT5G65130 [Arabidopsis thalian	0.348	0.382	0.508	2.8e-36
TAIR|locus:2034295	314	AT1G36060 [Arabidopsis thalian	0.562	0.544	0.442	3.5e-36
TAIR|locus:2060385	261	AT2G22200 [Arabidopsis thalian	0.644	0.750	0.404	2.3e-30
TAIR|locus:2014185	335	AT1G64380 [Arabidopsis thalian	0.625	0.567	0.343	5.9e-25
TAIR|locus:2119555	388	AT4G13620 [Arabidopsis thalian	0.213	0.167	0.646	2.3e-20
TAIR|locus:2051359	336	ERF53 "ERF domain 53" [Arabido	0.220	0.199	0.628	5.1e-19
TAIR|locus:2123708	292	AT4G28140 [Arabidopsis thalian	0.263	0.273	0.511	2.6e-15

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 123/224 (54%), Positives = 137/224 (61%)

Query:    91 NFLSPKPVPMKTVG----C------PPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWL 140
             N LSPKP+ MK  G    C       P KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWL
Sbjct:   119 NLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 178

Query:   141 GTFDTXXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAI 200
             GTFDT               RGDFARLNFPNLRHNGSHIGG+FGEYKPLHSSVDAKL AI
Sbjct:   179 GTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAI 238

Query:   201 CENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGS 260
             C+++AETQK    K  K S   +KK       +                     + +AGS
Sbjct:   239 CKSMAETQK--QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGS 296

Query:   261 SPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 304
             SP+SDLT  D  EPP        +E F L+KYPSYEIDW SIL+
Sbjct:   297 SPLSDLTFADPEEPPQW------NETFSLEKYPSYEIDWDSILA 334

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2015061 AT1G22190 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 99/187 (52%), Positives = 109/187 (58%)

Query:    93 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 152
             LSPKPV MK  G    KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT       
Sbjct:    62 LSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALA 121

Query:   153 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAET-QKLG 211
                     RGDFARLNFP+LRHN         EY+PL SSVDAKL AIC+NLAET QK  
Sbjct:   122 YDKAAYKLRGDFARLNFPDLRHND--------EYQPLQSSVDAKLEAICQNLAETTQKQV 173

Query:   212 TSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSPVSDLTCQDL 271
              S K+    S+ +KR  +   K                E   S GS  SSP+S+LT  D 
Sbjct:   174 RSTKK----SSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGS--SSPLSELTFGDT 227

Query:   272 TE---PP 275
              E   PP
Sbjct:   228 EEEIQPP 234

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 94/214 (43%), Positives = 117/214 (54%)

Query:    93 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 152
             L+PKPVPMK +        KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT       
Sbjct:    77 LAPKPVPMKNMTAQ-----KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMA 131

Query:   153 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGE-YKPLHSSVDAKLAAICENLAETQKLG 211
                     RG+FARLNFP  RH   + GG  G  + PLHSSVDAKL  IC++L +T+ + 
Sbjct:   132 YDLAAYKLRGEFARLNFPQFRHEDGYYGG--GSCFNPLHSSVDAKLQEICQSLRKTEDID 189

Query:   212 TSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGS--AGSSPVSDLTC- 268
                 E +    + +   S                   +E S SD S    SSP S +T  
Sbjct:   190 LPCSETELFPPKTEYQES------------EYGFLRSDENSFSDESHVESSSPESGITTF 237

Query:   269 QDLTEPPSELELDAASENFMLQKYPSYEIDWASI 302
              D ++   + E+ +    F L+K+PS EIDW +I
Sbjct:   238 LDFSDSGFD-EIGS----FGLEKFPSVEIDWDAI 266

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2171840 AT5G65130 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
 Identities = 59/116 (50%), Positives = 71/116 (61%)

Query:    89 GLNFLSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXX 148
             G + L+ KP  MK +     KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T   
Sbjct:    87 GSHLLTAKPTSMKKIDVAT-KPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQE 145

Query:   149 XXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHS-SVDAKLAAICEN 203
                         RGD ARLNFP++   G H       YK + S S++AK+ +IC +
Sbjct:   146 AALAYDQAAHKIRGDNARLNFPDIVRQG-H-------YKQILSPSINAKIESICNS 193

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2034295 AT1G36060 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 84/190 (44%), Positives = 98/190 (51%)

Query:    90 LNFLSPKPVPMKTVGCPPP----KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT 145
             LNF+ P      T   P      KPAKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT
Sbjct:   115 LNFIEPSQPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDT 174

Query:   146 XXXXXXXXXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLA 205
                            RGD ARLNFP LR+       + GEY P+ ++VDAKL AI   LA
Sbjct:   175 AEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI---LA 231

Query:   206 ETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSPVSD 265
             E  K    K E+ S    +KR      K               +    SDGS   SP SD
Sbjct:   232 EP-KNQPGKTERTS----RKR-----AKAAASSAEQPSAPQQHSGSGESDGSG--SPTSD 279

Query:   266 LTCQDLTEPP 275
             +  Q++ + P
Sbjct:   280 VMVQEMCQEP 289

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2060385 AT2G22200 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 89/220 (40%), Positives = 113/220 (51%)

Query:    93 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXX 152
             LSP  + MK +     K   LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+T       
Sbjct:    50 LSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALA 109

Query:   153 XXXXXXXXRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKL-G 211
                     RGD A+LNFPNL H          +  PL SSVD KL AIC++L +T+++  
Sbjct:   110 YDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICS 160

Query:   212 TSKKEKQ------SNSAQ---KKRHRSGNKKXXXXXXXXXXXXXXKNECSLSDGSAGSSP 262
              S + K+      S+  +    K      K+               +E SL D S     
Sbjct:   161 VSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYS 220

Query:   263 VSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 302
              SD T  D ++  +E E +  S  F L+K+PS EIDW +I
Sbjct:   221 SSDKTFLDFSD--TEFE-EIGS--FGLRKFPSVEIDWDAI 255

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2014185 AT1G64380 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 69/201 (34%), Positives = 105/201 (52%)

Query:   109 KPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLN 168
             K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DT               RG++ARLN
Sbjct:   131 KKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLN 190

Query:   169 FPNLRHNGSHIG-GEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRH 227
             FPNL+     +G G+  +   L ++VD K+ +IC+ + + ++   S K  +++SA     
Sbjct:   191 FPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRVRK-ERAKKSVKVSKNSSATADSS 249

Query:   228 RSGNKKXXXXXXXXXXXXXXKNECS--LSD-GSAGSSPVSDLTCQDLTEPPSELELDAA- 283
                + +               +E S  +S  G   S   S ++    +E P+  E +A  
Sbjct:   250 CLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSPVSVSVPSEVPATAEEEAMM 309

Query:   284 ---SENFMLQKYPSY--EIDW 299
                ++ F+L + PS+  E+ W
Sbjct:   310 GVDTDGFLLARMPSFDPELIW 330

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2119555 AT4G13620 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query:   110 PAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNF 169
             P KLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+T               RG+FA LNF
Sbjct:   228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNF 287

Query:   170 PNLRH 174
             P+L+H
Sbjct:   288 PDLKH 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2051359 ERF53 "ERF domain 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/70 (62%), Positives = 47/70 (67%)

Query:   106 PPPKP---AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXXRG 162
             PP +P    KLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDT               RG
Sbjct:   176 PPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRG 235

Query:   163 DFARLNFPNL 172
             + ARLNFP L
Sbjct:   236 ETARLNFPEL 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:2000070 "regulation of response to water deprivation" evidence=IEP

TAIR|locus:2123708 AT4G28140 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/84 (51%), Positives = 48/84 (57%)

Query:    90 LNFLSPKPVPMKTVGCPPPKP---AKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTX 146
             LN LSP+   M  +     +P    KLYRGVRQR WGKWVAEIR P++R RLWLGTFDT 
Sbjct:   117 LN-LSPRGRMMMMMSQEAVQPYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTA 175

Query:   147 XXXXXXXXXXXXXXRGDFARLNFP 170
                           RG  A LNFP
Sbjct:   176 EEAAMAYDRQAFKLRGHSATLNFP 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1E4	RAP24_ARATH	No assigned EC number	0.5028	0.9407	0.8562	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-33
pfam00847	53	pfam00847, AP2, AP2 domain	1e-16

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  122 bits (308), Expect = 1e-35
 Identities = 45/63 (71%), Positives = 50/63 (79%)

Query: 114 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLR 173
           YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA+K RG  ARLNFPN  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 174 HNG 176
           ++ 
Sbjct: 62  YDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  116 bits (294), Expect = 1e-33
 Identities = 44/61 (72%), Positives = 47/61 (77%)

Query: 112 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 171
             YRGVRQR WGKWVAEIR P    R+WLGTFDTAEEAA AYD+AA KLRG  A LNFP+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 172 L 172
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 29/52 (55%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 114 YRGVRQRH-WGKWVAEIRLPKNR--TRLWLGTFDTAEEAALAYDKAAYKLRG 162
           Y+GVR    WG+WVAEIR P  +   R  LGTF T EEAA A   A  KLRG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PHA00280	121	putative NHN endonuclease	99.57
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.12

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=5e-20  Score=135.96  Aligned_cols=61  Identities=72%  Similarity=1.165  Sum_probs=56.8

Q ss_pred             CceeeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021983          112 KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL  172 (304)
Q Consensus       112 S~YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~lNFP~~  172 (304)
                      |+|+||+++++|||+|+|+++..|+++|||+|+|+||||+|||.++++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998878899999999855599999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=8.2e-20  Score=136.54  Aligned_cols=63  Identities=71%  Similarity=1.170  Sum_probs=59.8

Q ss_pred             ceeeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 021983          113 LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHN  175 (304)
Q Consensus       113 ~YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~lNFP~~~~~  175 (304)
                      +|+||+++++|||+|+|+++.+|+++|||+|+|+||||.|||.++++++|.++++|||...|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599998788999999999988999999999999999999999999999999999999998774

>PHA00280 putative NHN endonuclease

Probab=99.57  E-value=3.7e-15  Score=125.82  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=64.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeee-EECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCC
Q 021983           93 LSPKPVPMKTVGCPPPKPAKLYRGV-RQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARL  167 (304)
Q Consensus        93 l~~~~~~mK~~g~~~~~ntS~YRGV-r~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~l  167 (304)
                      +.+..+++.|.+.. ++|+|||+|| +.+..|||+|+|++  +||+++||.|+++|+|+.||+ ++.+|||+||+.
T Consensus        49 ~~T~~eN~~N~~~~-~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         49 LALPKENSWNMKTP-KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             hcCHHHHhcccCCC-CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            57888999998876 8999999999 68888999999997  999999999999999999997 778999999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.12  E-value=1.3e-10  Score=83.75  Aligned_cols=52  Identities=38%  Similarity=0.597  Sum_probs=45.6

Q ss_pred             Cceeee-EECCCCcEEEEEeecC-C--CeEeecCCCCCHHHHHHHHHHHHHHHcCC
Q 021983          112 KLYRGV-RQRHWGKWVAEIRLPK-N--RTRLWLGTFDTAEEAALAYDKAAYKLRGD  163 (304)
Q Consensus       112 S~YRGV-r~r~~GKW~AeIr~p~-~--gkri~LGtFdTaEEAA~AYD~AA~klrG~  163 (304)
                      |+|+|| +.+..++|+|.|+++. +  +++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 5788899999999842 2  49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-09
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-09

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 112 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFP 170
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 111 AKLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNF 169
            K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
Query: 170 PNLRHN 175
           P LR N
Sbjct: 63  P-LRVN 67
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  126 bits (319), Expect = 2e-37
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 112 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 170
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 171 N 171
            
Sbjct: 61  L 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.72

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=6.8e-24  Score=158.78  Aligned_cols=60  Identities=67%  Similarity=1.127  Sum_probs=56.7

Q ss_pred             ceeeeEECCCCcEEEEEeecC-CCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021983          113 LYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL  172 (304)
Q Consensus       113 ~YRGVr~r~~GKW~AeIr~p~-~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~lNFP~~  172 (304)
                      +||||++++||||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699998888999999999986 489999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.72  E-value=0.2  Score=38.93  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=23.1

Q ss_pred             CCCCceeee-EECCCCcEEEEEeecCCCeEe
Q 021983          109 KPAKLYRGV-RQRHWGKWVAEIRLPKNRTRL  138 (304)
Q Consensus       109 ~ntS~YRGV-r~r~~GKW~AeIr~p~~gkri  138 (304)
                      ..+|+|.|| +.++.+.|+|.-.+  +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            458999999 78899999999987  67664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (287), Expect = 3e-33
 Identities = 42/60 (70%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 112 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 170
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+TAE+AALAYD+AA+++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.88

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=7.7e-24  Score=157.33  Aligned_cols=59  Identities=69%  Similarity=1.179  Sum_probs=55.5

Q ss_pred             ceeeeEECCCCcEEEEEeec-CCCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 021983          113 LYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN  171 (304)
Q Consensus       113 ~YRGVr~r~~GKW~AeIr~p-~~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~lNFP~  171 (304)
                      .||||+++++|||+|+|++| .+++++|||+|+|+||||+|||+|+++++|.++.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            59999888899999999986 567999999999999999999999999999999999996