Citrus Sinensis ID: 022033

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
ccccccccccccHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHc
ccEEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccHHHHHHHHHHHHHccEEEEEcccccEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccc
MQVGFMYHSLVEDYFTGFkqlhckgwrsvylnperpqflgtsttnlndslvqgtrwsSGLVQVAISKycpliygpprmslLESMAyadlgmfpllnclplwcfatvpqlcllhgiplypevlsssspIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAeasfsatnkvaddeqvklygmgkfdfrtskmflAPLVTIILLNIAAFVCGAIrstiitgdwdKMFVQISLSFYILVMNYAIIEGMIvrkdngrippsvTLSSALLSGIFLPLVSIILRH
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTggsikiwrnEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLssallsgiflPLVSIILRH
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
**VGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIIL**
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIITGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q651X6728 Cellulose synthase-like p yes no 0.963 0.401 0.365 7e-49
Q8VYR4722 Cellulose synthase-like p yes no 0.933 0.391 0.360 5e-48
Q651X7737 Cellulose synthase-like p yes no 0.933 0.383 0.348 9e-47
Q0WVN5751 Cellulose synthase-like p no no 0.940 0.379 0.346 1e-44
Q570S7760 Cellulose synthase-like p no no 0.897 0.357 0.348 6e-44
Q0DXZ1745 Cellulose synthase-like p no no 0.937 0.381 0.354 9e-44
Q8VZK9729 Cellulose synthase-like p no no 0.943 0.392 0.371 4e-41
Q84JA61049 Cellulose synthase A cata no no 0.930 0.268 0.343 5e-40
Q9AV711063 Cellulose synthase A cata no no 0.940 0.268 0.329 6e-40
Q69P511055 Cellulose synthase A cata no no 0.940 0.270 0.323 4e-39
>sp|Q651X6|CSLE6_ORYSJ Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1 Back     alignment and function desciption
 Score =  194 bits (493), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 165/298 (55%), Gaps = 6/298 (2%)

Query: 2   QVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLV 61
           ++G  Y   VED  TG   +HC+GW SVY+ P+R  F+G +   L  +++Q  RWS G  
Sbjct: 435 EIGVKYGCPVEDVITGL-AIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNF 493

Query: 62  QVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEV 121
            + +SK+   ++G  ++SL   M Y   G++   N LP   +  +P L L+ G PL+PE+
Sbjct: 494 TIFLSKHNTFLFGHGKISLQLQMGYCIYGLWAA-NSLPTIYYVMIPALGLVKGTPLFPEI 552

Query: 122 LSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKL 181
           +S  +  F++VF       LYE L +G ++K W N QR+WM++ +T  LYG ++ I   L
Sbjct: 553 MSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLL 612

Query: 182 GLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTII 241
           GL++ SF  T KV+D ++ K Y     +F +S      + T+ LLN    V G   S I+
Sbjct: 613 GLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGL--SKIM 670

Query: 242 TGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSA--LLSGIFLPLV 297
            G W+    Q+ L   I++ N  I E M VRKD GRIP  VTL+S   ++    LP+V
Sbjct: 671 AGVWNVFLPQVILCGLIVITNIPIYEAMFVRKDKGRIPLPVTLASIGFVMLAFLLPIV 728
Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8VYR4|CSLG2_ARATH Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1 Back     alignment and function description
>sp|Q651X7|CSLE1_ORYSJ Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2 Back     alignment and function description
>sp|Q0WVN5|CSLG3_ARATH Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2 Back     alignment and function description
>sp|Q570S7|CSLG1_ARATH Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DXZ1|CSLE2_ORYSJ Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZK9|CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1 Back     alignment and function description
>sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9AV71|CESA7_ORYSJ Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1 Back     alignment and function description
>sp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
297737188 822 unnamed protein product [Vitis vinifera] 0.980 0.361 0.623 1e-105
359477392 678 PREDICTED: cellulose synthase-like prote 0.980 0.438 0.623 1e-105
147785659 643 hypothetical protein VITISV_002996 [Viti 0.976 0.460 0.622 1e-104
224111028 857 predicted protein [Populus trichocarpa] 0.983 0.347 0.64 1e-103
359477703 733 PREDICTED: cellulose synthase-like prote 0.980 0.405 0.593 1e-100
255576870 762 cellulose synthase, putative [Ricinus co 0.914 0.363 0.630 7e-99
356535446 740 PREDICTED: cellulose synthase-like prote 0.983 0.402 0.567 3e-90
255576868 711 cellulose synthase, putative [Ricinus co 0.980 0.417 0.53 3e-86
356548660 736 PREDICTED: cellulose synthase-like prote 0.986 0.406 0.536 5e-86
359477705 720 PREDICTED: cellulose synthase-like prote 0.917 0.386 0.569 6e-86
>gi|297737188|emb|CBI26389.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/300 (62%), Positives = 232/300 (77%), Gaps = 3/300 (1%)

Query: 2   QVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLV 61
           +VGF+Y S++EDY T F  +HC+GW SVY NP +PQFLG+  TN+ND LVQGTRWSSGL 
Sbjct: 502 EVGFLYQSVLEDYLTAFT-MHCRGWTSVYCNPSKPQFLGSGVTNMNDLLVQGTRWSSGLF 560

Query: 62  QVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEV 121
            VAISK+ PLIYGP RMS+LES  YA L  FPL   + +WCF  +PQLCLL+GIPLYP+V
Sbjct: 561 DVAISKFSPLIYGPLRMSILESFCYAYLAYFPLY-FISVWCFGIIPQLCLLNGIPLYPKV 619

Query: 122 LSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKL 181
             S   IF F+F+S+LSKHLYEVL TGGS + W NEQR WMI+++TC LYGS++AIM K+
Sbjct: 620 SDSFFMIFAFIFVSSLSKHLYEVLFTGGSFQTWMNEQRNWMIKSLTCHLYGSMDAIMKKI 679

Query: 182 GLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTII 241
           G+ EASF  TNKV D+EQ KLY MGKFDFRTS   LAP+V +++ N+AAF+ G  R  I 
Sbjct: 680 GMREASFLTTNKVVDNEQEKLYQMGKFDFRTSTAILAPVVILVISNMAAFMVGLAR-VIA 738

Query: 242 TGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIIL 301
            G+WDKMFVQ+ LSFYIL+M+Y I+EGMI+RKD GR+PPS+TL S +L+ + L L S  L
Sbjct: 739 AGNWDKMFVQVVLSFYILIMSYPIVEGMILRKDKGRVPPSITLLSTVLAMVLLTLGSTAL 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477392|ref|XP_002280640.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785659|emb|CAN70913.1| hypothetical protein VITISV_002996 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111028|ref|XP_002315722.1| predicted protein [Populus trichocarpa] gi|222864762|gb|EEF01893.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477703|ref|XP_002280696.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576870|ref|XP_002529321.1| cellulose synthase, putative [Ricinus communis] gi|223531245|gb|EEF33090.1| cellulose synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356535446|ref|XP_003536256.1| PREDICTED: cellulose synthase-like protein G2-like [Glycine max] Back     alignment and taxonomy information
>gi|255576868|ref|XP_002529320.1| cellulose synthase, putative [Ricinus communis] gi|223531244|gb|EEF33089.1| cellulose synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548660|ref|XP_003542718.1| PREDICTED: cellulose synthase-like protein G2-like [Glycine max] Back     alignment and taxonomy information
>gi|359477705|ref|XP_002280742.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2138116722 CSLG2 "AT4G24000" [Arabidopsis 0.930 0.390 0.366 1.4e-48
TAIR|locus:2012050729 CSLE1 "AT1G55850" [Arabidopsis 0.943 0.392 0.371 2.4e-45
TAIR|locus:2138106751 CSLG3 "AT4G23990" [Arabidopsis 0.943 0.380 0.360 1.1e-44
TAIR|locus:2138126760 CSLG1 "AT4G24010" [Arabidopsis 0.897 0.357 0.348 7.1e-44
TAIR|locus:21724571049 CESA4 "cellulose synthase A4" 0.933 0.269 0.341 9.5e-42
TAIR|locus:2124167985 IRX1 "IRREGULAR XYLEM 1" [Arab 0.924 0.284 0.338 1.6e-40
TAIR|locus:21789351026 IRX3 "IRREGULAR XYLEM 3" [Arab 0.924 0.272 0.335 2.2e-40
TAIR|locus:21567891065 CEV1 "CONSTITUTIVE EXPRESSION 0.927 0.263 0.324 6.1e-39
TAIR|locus:21277761081 CESA1 "cellulose synthase 1" [ 0.924 0.259 0.305 3.2e-37
TAIR|locus:20525761088 CESA9 "cellulose synthase A9" 0.914 0.254 0.318 4.2e-37
TAIR|locus:2138116 CSLG2 "AT4G24000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 107/292 (36%), Positives = 172/292 (58%)

Query:     2 QVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLV 61
             ++GF Y SLVEDYFTGF  LHC+GWRS++ +P +  F G S   L D + Q  RWS GL+
Sbjct:   426 KIGFRYGSLVEDYFTGF-MLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLL 484

Query:    62 QVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEV 121
             +VA S+Y PL YG   +SLL S+ Y     +P   C+PL  +  +PQ+ L+HG+ ++P+ 
Sbjct:   485 EVAFSRYNPLTYGIKPLSLLMSLGYCHYAFWPFW-CIPLVVYGILPQVALIHGVSVFPKA 543

Query:   122 LSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKL 181
                   +++ +FL   ++ L + L  GG+ + W N+QR+WM+R ++   +G     +  L
Sbjct:   544 SDPWFWLYIILFLGGYAQDLSDFLLEGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTL 603

Query:   182 GLAEASFSATNKVADD-EQVKLYGMGKFDFR-TSKMFLAPLVTIILLNIAAFVCGAIRST 239
              L+   ++ T+K  DD EQ+K Y    FDF  +S MFL P+ T+ ++N+ AF+ G     
Sbjct:   604 NLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPSSSMFL-PITTVAIMNLLAFMRGLYG-- 660

Query:   240 IITGDWDK-MFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLS 290
             I T  W +   +++ L+ + +V    I E M++R D+G++P  +   + LLS
Sbjct:   661 IFT--WGEGPVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRICFLAGLLS 710
GO:0000271 "polysaccharide biosynthetic process" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016759 "cellulose synthase activity" evidence=ISS
GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA
GO:0030244 "cellulose biosynthetic process" evidence=IEA
TAIR|locus:2012050 CSLE1 "AT1G55850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138106 CSLG3 "AT4G23990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138126 CSLG1 "AT4G24010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
PLN02893734 PLN02893, PLN02893, Cellulose synthase-like protei 7e-79
PLN029151044 PLN02915, PLN02915, cellulose synthase A [UDP-form 2e-53
pfam03552716 pfam03552, Cellulose_synt, Cellulose synthase 2e-50
PLN021891040 PLN02189, PLN02189, cellulose synthase 6e-50
PLN026381079 PLN02638, PLN02638, cellulose synthase A (UDP-form 1e-47
PLN02195977 PLN02195, PLN02195, cellulose synthase A 2e-46
PLN024361094 PLN02436, PLN02436, cellulose synthase A 4e-45
PLN024001085 PLN02400, PLN02400, cellulose synthase 8e-45
PLN022481135 PLN02248, PLN02248, cellulose synthase-like protei 2e-28
PLN02190756 PLN02190, PLN02190, cellulose synthase-like protei 1e-23
cd06421234 cd06421, CESA_CelA_like, CESA_CelA_like are involv 8e-10
TIGR03030713 TIGR03030, CelA, cellulose synthase catalytic subu 2e-05
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information 
 Score =  253 bits (648), Expect = 7e-79
 Identities = 118/306 (38%), Positives = 190/306 (62%), Gaps = 13/306 (4%)

Query: 2   QVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLV 61
           ++GF Y SLVEDY+TG+ +L C+GW+S++ NP+RP FLG S  NL+D L Q  RWS GL+
Sbjct: 437 KMGFRYGSLVEDYYTGY-RLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLL 495

Query: 62  QVAISKYCPLIYGPPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEV 121
           +VA SKY P+ +G   + LL  + YA    +P+   +P+  +A +PQL LL+G+ ++P+ 
Sbjct: 496 EVAFSKYSPITFGVKSIGLLMGLGYAHYAFWPIW-SIPITIYAFLPQLALLNGVSIFPKA 554

Query: 122 LSSSSPIF---VFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSLNAIM 178
              S P F   +F+FL A  + L + L +GG+I+ W N+QR+WMIR ++  L+G +  ++
Sbjct: 555 ---SDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLL 611

Query: 179 HKLGLAEASFSATNKVADDEQVKLYGMGKFDFRT-SKMFLAPLVTIILLNIAAFVCGAIR 237
             LG++   F+ T+KV D+EQ K Y  G F+F   S MFL PL T  ++N+ +F+ G  +
Sbjct: 612 KTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFL-PLTTAAIINLVSFLWGIAQ 670

Query: 238 STIITGDW-DKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPL 296
             I      + +F+Q+ L+ + +V  + I E M++R D+G++P  +TL S +L+      
Sbjct: 671 --IFRQRNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728

Query: 297 VSIILR 302
            S   +
Sbjct: 729 SSFAFK 734

Length = 734
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
PLN02893734 Cellulose synthase-like protein 100.0
PF03552720 Cellulose_synt: Cellulose synthase; InterPro: IPR0 100.0
PLN02190756 cellulose synthase-like protein 100.0
PLN026381079 cellulose synthase A (UDP-forming), catalytic subu 100.0
PLN02195977 cellulose synthase A 100.0
PLN024001085 cellulose synthase 100.0
PLN021891040 cellulose synthase 100.0
PLN024361094 cellulose synthase A 100.0
PLN029151044 cellulose synthase A [UDP-forming], catalytic subu 100.0
PLN022481135 cellulose synthase-like protein 100.0
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 100.0
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 100.0
PRK05454691 glucosyltransferase MdoH; Provisional 99.59
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 99.42
PRK14583444 hmsR N-glycosyltransferase; Provisional 99.41
COG1215439 Glycosyltransferases, probably involved in cell wa 99.4
PRK11204420 N-glycosyltransferase; Provisional 99.36
PRK14716504 bacteriophage N4 adsorption protein B; Provisional 99.26
cd04191254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 99.23
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 99.11
PF13632193 Glyco_trans_2_3: Glycosyl transferase family group 99.01
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 98.78
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 98.69
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 98.66
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 98.58
COG2943 736 MdoH Membrane glycosyltransferase [Cell envelope b 98.34
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 98.32
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 98.08
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 97.89
TIGR03472373 HpnI hopanoid biosynthesis associated glycosyl tra 97.84
PF03142527 Chitin_synth_2: Chitin synthase; InterPro: IPR0048 97.65
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 97.5
KOG2571862 consensus Chitin synthase/hyaluronan synthase (gly 96.71
TIGR03469384 HonB hopene-associated glycosyltransferase HpnB. T 93.24
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 93.04
PF13506175 Glyco_transf_21: Glycosyl transferase family 21 88.43
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information 
Probab=100.00  E-value=8.6e-74  Score=575.80  Aligned_cols=298  Identities=37%  Similarity=0.765  Sum_probs=284.9

Q ss_pred             ccccccCCchhhHHHhHHHHHHCCCeEEecCCCCCccccccCCChHHHhhHhhhhhhhhHHHHHhhcCccccCCCCCCHh
Q 022033            2 QVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLL   81 (303)
Q Consensus         2 evG~~~~siTED~~Tg~~~Lh~~Gwrs~Y~~~~~~af~GlaP~~l~~~~~Qr~RWa~G~~qi~~~~~~Pl~~~~~~L~~~   81 (303)
                      |+||.|||+|||++||++ ||++||||+|++|++++|.|+||+|++++++||+|||+|++||+++|+||++.+.++|++.
T Consensus       437 ~~G~~ygsvtED~~Tg~~-lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~  515 (734)
T PLN02893        437 KMGFRYGSLVEDYYTGYR-LQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLL  515 (734)
T ss_pred             ccceEeccccccHHHHHH-HHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHH
Confidence            799999999999999999 9999999999999988999999999999999999999999999999999999776899999


Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHHHHHHcCCcccccccchhhH
Q 022033           82 ESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIW  161 (303)
Q Consensus        82 Qrl~Y~~~~~y~~~~~~~~l~~~l~P~l~ll~g~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~g~~~~~ww~~~~~~  161 (303)
                      ||++|++.++|| +.++|+++|+++|++||++|++++|+.+++++..++.++++.+.++++|++++|.++++|||+||+|
T Consensus       516 Qrl~Y~~~~~~~-~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w  594 (734)
T PLN02893        516 MGLGYAHYAFWP-IWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMW  594 (734)
T ss_pred             HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheee
Confidence            999999999999 9999999999999999999999999988888888888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcceeeCcCCCchhhhhhhcCcceecccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022033          162 MIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTII  241 (303)
Q Consensus       162 ~i~~~~~~~~~~~~~l~~~l~~~~~~F~VT~K~~~~~~~~~y~~g~~~f~~~~~l~~P~~~l~~l~l~alv~g~~~~~~~  241 (303)
                      +|.++++++++++++++|.+|+++.+|+||+|+.++++.++|++|.|+|+.++++++|.++++++|++|+++|+.|. +.
T Consensus       595 ~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~-~~  673 (734)
T PLN02893        595 MIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQI-FR  673 (734)
T ss_pred             ehHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            99999999999999999999999999999999988777789999999999669999999999999999999999998 76


Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHhhhhhc
Q 022033          242 TGDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGRIPPSVTLSSALLSGIFLPLVSIILR  302 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~w~~~~~~p~~~~l~~r~~k~~~P~~~~~~~~~~~~~~~~~~~~~~~  302 (303)
                      ++.++.+++++++++|++++++|+++|++.||||+++|+||+++|++|+.++|.+.+++.|
T Consensus       674 ~~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~~~~~~~  734 (734)
T PLN02893        674 QRNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLASSFAFK  734 (734)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHHHhhhcC
Confidence            6678888999999999999999999999999999999999999999999999999988764

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals Back     alignment and domain information
>PLN02190 cellulose synthase-like protein Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>PLN02195 cellulose synthase A Back     alignment and domain information
>PLN02400 cellulose synthase Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>PLN02248 cellulose synthase-like protein Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>PF13506 Glyco_transf_21: Glycosyl transferase family 21 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
4hg6_A 802 Structure Of A Cellulose Synthase - Cellulose Trans 6e-04
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802 Back     alignment and structure 
Iteration: 1

 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 4   GFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQV 63
           GF   ++ ED  T   ++H +GW+S+Y++  R    G         + Q  RW++G++Q+
Sbjct: 334 GFAGETITEDAETAL-EIHSRGWKSLYID--RAMIAGLQPETFASFIQQRGRWATGMMQM 390
Query: 64  AISKYCPLIYG---PPRMSLLESMAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLY 118
            + K      G     R+  L SM++     FPL+  +    F   P + L  GI ++
Sbjct: 391 LLLKNPLFRRGLGIAQRLCYLNSMSF---WFFPLVRMM----FLVAPLIYLFFGIEIF 441

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 99.94
2fy7_A287 Beta-1,4-galactosyltransferase 1; M339H mutant, AP 95.38
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
Probab=99.94  E-value=2.4e-25  Score=231.39  Aligned_cols=244  Identities=16%  Similarity=0.234  Sum_probs=178.3

Q ss_pred             ccccCCchhhHHHhHHHHHHCCCeEEecCCCCCccccccCCChHHHhhHhhhhhhhhHHHHHhhcCccccCCCCCCHhHH
Q 022033            4 GFMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYGPPRMSLLES   83 (303)
Q Consensus         4 G~~~~siTED~~Tg~~~Lh~~Gwrs~Y~~~~~~af~GlaP~~l~~~~~Qr~RWa~G~~qi~~~~~~Pl~~~~~~L~~~Qr   83 (303)
                      ||++++++||.+++.+ ++++|||+.|+++....  +.+|+|++++++||.||++|.+|+++. ++|+..  +++++.||
T Consensus       334 gf~~~~~~ED~~l~~r-l~~~G~ri~~~~~~~~~--~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~~--~~l~~~~r  407 (802)
T 4hg6_A          334 GFAGETITEDAETALE-IHSRGWKSLYIDRAMIA--GLQPETFASFIQQRGRWATGMMQMLLL-KNPLFR--RGLGIAQR  407 (802)
T ss_dssp             TCCCSSSSHHHHHHHH-HHTTTCCEEECCCCCEE--ECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTSC--SSCCHHHH
T ss_pred             CcCCCCcchHHHHHHH-HHHcCCeEEEecCCEEE--ecCCCCHHHHHHHHHHHHccHHHHHHH-hCcccc--CCCCHHHH
Confidence            6888999999999999 99999999999876554  999999999999999999999999984 589887  89999999


Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHH-HHHHHcCCcccccccchhhHH
Q 022033           84 MAYADLGMFPLLNCLPLWCFATVPQLCLLHGIPLYPEVLSSSSPIFVFVFLSALSKHL-YEVLSTGGSIKIWRNEQRIWM  162 (303)
Q Consensus        84 l~Y~~~~~y~~~~~~~~l~~~l~P~l~ll~g~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~g~~~~~ww~~~~~~~  162 (303)
                      ++|+++..++ +.+++.++++++|++++++|+.++......++.    +++++.+... +.....|.....||.     .
T Consensus       408 l~~l~~~~~~-~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~----~~lp~~l~~~~~~~~~~~~~r~~~~~-----~  477 (802)
T 4hg6_A          408 LCYLNSMSFW-FFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLA----YMPGYLAVSFLVQNALFARQRWPLVS-----E  477 (802)
T ss_dssp             HHHHHHHHHT-THHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH----HHHHHHHHHHHHHHHHHTTTSCTTHH-----H
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHH----HHHHHHHHHHHHHHHHhcCcHHHHHH-----H
Confidence            9999999999 889999999999999999999887643222222    2223222221 111111211112221     2


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcceeeCcCCCchhhhhhhcCcceecccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022033          163 IRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGKFDFRTSKMFLAPLVTIILLNIAAFVCGAIRSTIIT  242 (303)
Q Consensus       163 i~~~~~~~~~~~~~l~~~l~~~~~~F~VT~K~~~~~~~~~y~~g~~~f~~~~~l~~P~~~l~~l~l~alv~g~~~~~~~~  242 (303)
                      +..+...++.+...+..++++++.+|+||+|+++.++.        .+   +.+..|++++++++++++++|+++. ...
T Consensus       478 l~~~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~--------~~---~~~~~p~~~~~~l~~~~~~~~~~~~-~~~  545 (802)
T 4hg6_A          478 VYEVAQAPYLARAIVTTLLRPRSARFAVTAKDETLSEN--------YI---SPIYRPLLFTFLLCLSGVLATLVRW-VAF  545 (802)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSSC--------CB---CTTCHHHHHHHHHHHHHHHHHHHHH-HHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcceECCCCcccccc--------ch---hhHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            22233333444455556678899999999999865531        11   2577899999999999999999987 533


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 022033          243 GDWDKMFVQISLSFYILVMNYAIIEGMIVRKDNGR  277 (303)
Q Consensus       243 ~~~~~~~~~~~~~~w~~~~~~p~~~~l~~r~~k~~  277 (303)
                      .  ......++.++|.++|++.+..++..+.+|.+
T Consensus       546 ~--~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~  578 (802)
T 4hg6_A          546 P--GDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQ  578 (802)
T ss_dssp             G--GGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCC
T ss_pred             C--CccchhhhhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            2  22334567788888888888888866655443
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00