Citrus Sinensis ID: 022068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Secondary Structure (PSIPRED)
ccccccHHHHHcHHHHHHHHHcccccccccHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEcccEEEcccccccHHHHHHHHHcccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEcccccccccEEEEEccccccHHHHHHHHHHccEEcccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcHHHHHHHHHHccHccccHHHHHHHccccccccEEEEEEEccccccccccccccHHccccccccccccccccccccccEEEEEEcccccccHHHcccccccHHHHHHHHHHHccccccccEEEEcccccccccccEEEEcccEEEccccHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHHccccEHHHHHHEEEEEEcccccEEccc
Coil and Loop (DISEMBL)
mrigdpfrILITPAAAAAAaryhplhqakpllilshalhptrtrTRILItrtdtnnmstisaeddakygftrEEMYKEKLagtvnpygrhVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVcgggegtdgdvlifpemikyeglkesdvdsfvddvlvngkpwasgvqeglTGSYVFVCshgsrdkrcgvcgpaLIEKFNAEidsrglkdqifvkpcshigghkyagnlivyspdsegkimghwygyvtpddvpaiLDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Flexible Loop (DISEMBL)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLilshalhptrtrtrilitrtdtnnmstisaeddakygFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVeasdtdtlPKLLASalktrkddmtvKSLMTvcgggegtdgdvlIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Low Complexity Region (SEG)
MRIGDPFRILITPaaaaaaaRYHPLHQAKPLLILSHALHPtrtrtrilitrtdtNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEsdvdsfvddvlvNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Disordered region (IsUnstruct)
*****PFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNM**I****DAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGC*
Disordered Region (DISOPRED)
*****PFRILITPAA***********QAKPL********************************DDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLP*****************************DGDVLIFPEMIKYEGLKESDVDSFVDDVLVN**********GLTGSYVFVCSHGSRDK***VCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Disordered Region (DISEMBL)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Disordered Region (DISPRO)
*RIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGIFLGCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q6BPT6	273	Altered inheritance of mi	yes	no	0.333	0.369	0.390	4e-15
A5DK49	282	Altered inheritance of mi	N/A	no	0.333	0.358	0.371	4e-15
P38281	316	Actin patches distal prot	yes	no	0.438	0.420	0.306	2e-14
Q6FLQ5	313	Altered inheritance of mi	no	no	0.452	0.437	0.301	1e-13
C5DDQ4	332	Altered inheritance of mi	no	no	0.339	0.310	0.355	1e-13
C4Y1G7	273	Altered inheritance of mi	N/A	no	0.561	0.622	0.299	3e-13
C5DZI5	326	Altered inheritance of mi	no	no	0.306	0.285	0.346	4e-11
Q6CXH7	322	Altered inheritance of mi	no	no	0.660	0.621	0.259	2e-09
D3XDD3	311	Altered inheritance of mi	N/A	no	0.320	0.311	0.330	2e-08
Q5XQP3	311	Altered inheritance of mi	N/A	no	0.306	0.299	0.333	3e-08

>sp|Q6BPT6|AIM32_DEBHA Altered inheritance of mitochondria protein 32 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM32 PE=3 SV=2

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 183 QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAG 242
           ++ +    + VC H  RD RCG   P L+++F   +  RGL   + V   SHIGGH YAG
Sbjct: 170 EQDIGKDLILVCGHTQRDVRCGKIAPILVDQFKKSLKDRGLDVDVGV--VSHIGGHAYAG 227

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           N+I +  D   K +  WYG V P+ V  I+D+ +  G II+ L+R
Sbjct: 228 NVIYFPSDKTKKSI--WYGRVFPEKVAGIVDETVIGGNIIKELYR 270

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A5DK49|AIM32_PICGU Altered inheritance of mitochondria protein 32 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=AIM32 PE=3 SV=2

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 183 QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAG 242
           ++ +T   V +C HGSRD RCGV GP L  +F+  +    +   +     +H+GGH YAG
Sbjct: 176 EQDITDELVLICGHGSRDVRCGVMGPLLQREFDQVLTQENMSSHVKTGQITHVGGHAYAG 235

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           N++ +    E      WYG V P+DV  I+D  I +G II   +R
Sbjct: 236 NVVYFPRKGESV----WYGRVFPEDVQGIVDTTIKQGVIIRDKYR 276

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|P38281|APD1_YEAST Actin patches distal protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APD1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 27/160 (16%)

Query: 142 GTDGDVLIFPEMIKYEGLKESDVDSFVD-------------DVLVNGKPWASGVQEGLTG 188
           GT  +VLI P  I    L+  DV++ +D             + L+  +P  +  +E    
Sbjct: 145 GTKNNVLILPYFIWLNDLRSDDVEATLDGLVPDLLDENISREKLLETRPNVAVARER--- 201

Query: 189 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL--------KDQIFVKPCSHIGGHKY 240
           ++VF+CSH +RDKRCG+  P L + F++++   GL         + + +   +H+GGHK+
Sbjct: 202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKF 261

Query: 241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 280
           A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct: 262 AANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298

Required for normal localization of actin patches. Involved in tolerance to sodium ions and hydrogen peroxide.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FLQ5|AIM32_CANGA Altered inheritance of mitochondria protein 32 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=AIM32 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 39/176 (22%)

Query: 146 DVLIFPEMIKYEGLKESDVDSFVDDV--------------LVNGKPWASGV--------- 182
           D L+ P+M +Y  +K+ D++ F   +               ++GK  A+ V         
Sbjct: 138 DFLVMPDM-RYYRVKKPDIEKFSQYINSGHAVAPKLSFSDYLSGKAAATTVSNNNQITLS 196

Query: 183 -------QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
                  +E    +++FVC H  RD RCG+ GP ++   N   +S+ L +   +   SHI
Sbjct: 197 LDDSIYYRELKNDAWLFVCGHEKRDMRCGIMGPEILHSVNTA-NSKPLVNNTGI--ISHI 253

Query: 236 GGHKYAGNLIVYSP----DSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           GGHK+AGN+++Y P    +   K+   W+G VTP +V  I+ Q + +G IIE  +R
Sbjct: 254 GGHKFAGNILIYKPIENQNGRKKVDSLWFGKVTPFNVSEIV-QSVNEGVIIENNFR 308

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|C5DDQ4|AIM32_LACTC Altered inheritance of mitochondria protein 32 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=AIM32 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 15/118 (12%)

Query: 179 ASGVQEGLTGSY----VFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSH 234
           A+G+++    SY    V VC H  RD+RCG   P LI++F A+++     + + +   SH
Sbjct: 214 AAGMKQFAAQSYQNNLVLVCGHHQRDERCGQIAPRLIKEFEAKVE-----EDLDLAIVSH 268

Query: 235 IGGHKYAGNLIVY-----SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           IGGHK+AGN+I Y       D +  +   W+G + P  VP +L+ H+ + EII   +R
Sbjct: 269 IGGHKFAGNVIFYKFLGFEADGKATVDSLWFGKILPSAVPTLLE-HLGRNEIITPWFR 325

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

>sp|C4Y1G7|AIM32_CLAL4 Altered inheritance of mitochondria protein 32 OS=Clavispora lusitaniae (strain ATCC 42720) GN=AIM32 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 34/204 (16%)

Query: 111 DTLPKLLASALKTRKDDM------TVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV 164
           + +P  LAS  +  +  M         S   V G   GT   V I+P+ I+ E  K +++
Sbjct: 73  NLVPGSLASEFEVLRRKMLSPQHPVTLSNAIVSGIDGGTHQKVFIYPDCIQVE-FKLANL 131

Query: 165 DSFVDDVLVNGK-------PWASG-------------VQEG-LTGSYVFVCSHGSRDKRC 203
             F+   L+  +       P+AS               QE  +    V +C H  RD RC
Sbjct: 132 PEFIQHYLLPVQETESVFNPFASANATPHTKVERPHLFQETPIHKDLVLICGHTQRDIRC 191

Query: 204 GVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYV 263
           G   P L+++F   +    L   + V   SHIGGH YAGN+I +S          WYG V
Sbjct: 192 GRIAPLLLQEFERVLAHEKL--DVDVGLVSHIGGHAYAGNVIYFSKHQPPV----WYGRV 245

Query: 264 TPDDVPAILDQHIAKGEIIERLWR 287
            P+ V  I+ + I +G II+ L+R
Sbjct: 246 FPEQVQGIVRETIVEGRIIKELYR 269

Clavispora lusitaniae (strain ATCC 42720) (taxid: 306902)

>sp|C5DZI5|AIM32_ZYGRC Altered inheritance of mitochondria protein 32 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=AIM32 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 11/104 (10%)

Query: 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS- 248
           ++ VC H  RD+RCG+ G  LI     EI ++GL     V   SH+GGHK+AGNLI+Y+ 
Sbjct: 222 WILVCGHNQRDRRCGILGKELIN----EISAKGLDKDKNVALISHVGGHKFAGNLILYNY 277

Query: 249 -----PDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
                   E ++   W+  V P ++  +L +H+   +I +  +R
Sbjct: 278 VGTNEKTGENQLDSLWFSRVLPPNLGTLL-EHVDAKKIPQEYYR 320

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

>sp|Q6CXH7|AIM32_KLULA Altered inheritance of mitochondria protein 32 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=AIM32 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 54/254 (21%)

Query: 80  LAGTVNPYGRHVFLCFKGPE---MWVARVEASDT--DTLPKLLASALKTRKDD--MTVKS 132
           L   V  Y +HV +  K P+    W +++E +     ++   L S+LK  +D   + V  
Sbjct: 68  LPNKVPEYHKHVLMLSKDPKGWKNWPSKLEMAHEYPHSMVGTLKSSLKDTRDGSGVLVNE 127

Query: 133 LMTVCGGGEGTDGDVLIFPEMIKYEGLKE--SDVDSFVDDVLVNGKPWASGVQEGLTGS- 189
           L         T    L+ P+M  YE  ++  SD   F+ D   + +   S   + L GS 
Sbjct: 128 LALDGYTSSETHLKFLVIPDMKVYEVHRDRVSDFALFLGDGKQDSRKKLS-FNDFLKGSD 186

Query: 190 ----------------------------YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSR 221
                                          VC H  RD RCG   P LI K N+     
Sbjct: 187 AVGQTAIHSSGSVANSIPNFQSEPFHSDIAMVCGHYLRDARCGELAPLLIAKLNS----- 241

Query: 222 GLKDQIFVKPCSHIGGHKYAGNLIVY--------SPDSEGKIMGHWYGYVTPDDVPAILD 273
            +K  +     SH GGHK+AGNLI Y        + +  GKI G W   + P ++  +  
Sbjct: 242 -IKPNLKTGIVSHFGGHKFAGNLIYYQFNGLKIHNDNETGKIDGLWLSKLLPQNLEFVF- 299

Query: 274 QHIAKGEIIERLWR 287
           +H+ K  I++  +R
Sbjct: 300 RHLDKDIILQDFYR 313

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|D3XDD3|AIM32_SACKU Altered inheritance of mitochondria protein 32 OS=Saccharomyces kudriavzevii GN=AIM32 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 186 LTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLI 245
           L   +  VC H  RD +CG  GP +I  F    D + L D   +   SH+GGH +AGN+I
Sbjct: 205 LLRDWSLVCGHYKRDAKCGEMGPDIIAAFQ---DEKLLTDNN-LGLISHVGGHVFAGNVI 260

Query: 246 VY----SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
            Y    + ++  K+   W+G V P ++  +L +++  G+II+ ++R
Sbjct: 261 FYKLFKAENALNKLDSLWFGKVYPHNL-KLLCENLENGKIIDEMYR 305

Saccharomyces kudriavzevii (taxid: 114524)

>sp|Q5XQP3|AIM32_SACK1 Altered inheritance of mitochondria protein 32 OS=Saccharomyces kudriavzevii (strain ATCC MYA-4449 / AS 2.2408 / CBS 8840 / NBRC 1802 / NCYC 2889) GN=AIM32 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVY-- 247
           +  VC H  RD +CG  GP +I  F    D + L D   +   SH+GGH +AGN+I Y  
Sbjct: 209 WSLVCGHYKRDAKCGEMGPDIIAAFQ---DEKLLTDNN-LGLISHVGGHVFAGNVIFYKL 264

Query: 248 --SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             + ++  K+   W+G V P ++  +L +++  G+II+ ++R
Sbjct: 265 FKAENALNKLDSLWFGKVYPHNL-KLLCENLENGKIIDEMYR 305

Saccharomyces kudriavzevii (taxid: 114524)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
255560918	361	conserved hypothetical protein [Ricinus	0.755	0.634	0.737	8e-99
224055571	356	predicted protein [Populus trichocarpa]	0.808	0.688	0.685	1e-97
449446704	353	PREDICTED: altered inheritance of mitoch	0.920	0.790	0.589	4e-95
225452328	399	PREDICTED: altered inheritance of mitoch	0.930	0.706	0.624	2e-92
30688845	379	Sucrase/ferredoxin-like protein [Arabido	0.798	0.638	0.628	3e-89
222423923	371	AT3G27570 [Arabidopsis thaliana]	0.798	0.652	0.628	4e-89
110736944	376	sucrose cleavage like protein [Arabidops	0.798	0.643	0.628	4e-89
16604338	340	AT3g27570/MMJ24_12 [Arabidopsis thaliana	0.762	0.679	0.653	1e-88
297818354	339	AT3g27570/MMJ24_12 [Arabidopsis lyrata s	0.759	0.678	0.653	3e-88
449522640	363	PREDICTED: altered inheritance of mitoch	0.772	0.644	0.638	5e-88

>gi|255560918|ref|XP_002521472.1| conserved hypothetical protein [Ricinus communis] gi|223539371|gb|EEF40962.1| conserved hypothetical protein [Ricinus communis]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 171/232 (73%), Positives = 196/232 (84%), Gaps = 3/232 (1%)

Query: 59  TISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLA 118
           + +AE+DAK+GFTR EMYK  LAGTV+ Y RHVFLCFK P+ W+ RVE S TD LPKL +
Sbjct: 11  SAAAEEDAKFGFTRPEMYKSNLAGTVDQYDRHVFLCFKNPDAWLPRVEESQTDPLPKLFS 70

Query: 119 SALKTRKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKESDVDSFVDDVLVNG 175
           SA+K RK+D+T+K+ +T+  GGEGTD   GDVLIFP+MIKY+ LKE+DVD FV+DVLVNG
Sbjct: 71  SAVKARKNDITIKTKVTISEGGEGTDFENGDVLIFPDMIKYKCLKETDVDGFVEDVLVNG 130

Query: 176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
           KPWASGVQE LTGS+VFVC+HGSRDKRCGVCGP LIEK    I SRGL DQIFV  CSH+
Sbjct: 131 KPWASGVQEVLTGSHVFVCAHGSRDKRCGVCGPILIEKLKEGIQSRGLSDQIFVSACSHV 190

Query: 236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           GGHKYAGNLI+YSPDSEGK MGHWYGYVTPDDVP ILDQHI KG +IER+WR
Sbjct: 191 GGHKYAGNLIIYSPDSEGKTMGHWYGYVTPDDVPEILDQHIGKGVVIERIWR 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055571|ref|XP_002298545.1| predicted protein [Populus trichocarpa] gi|222845803|gb|EEE83350.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/251 (68%), Positives = 203/251 (80%), Gaps = 6/251 (2%)

Query: 54  TNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTL 113
           T N+ST + ED A YGFTR EMYK  LAGTV PY RHVFLCFK P+ W+  VE  D   L
Sbjct: 4   TENVSTTATEDAANYGFTRSEMYKSNLAGTVGPYDRHVFLCFKNPDAWLPHVEEDD---L 60

Query: 114 PKLLASALKTRKDDMTVKSLMTVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDD 170
           PKL+A+ALKTRK+D+TVK+ +T+C GGEG+   +GDVLIFP+MIKY+ LK+SDVD FVDD
Sbjct: 61  PKLVATALKTRKNDITVKTKVTICEGGEGSEFENGDVLIFPDMIKYKDLKDSDVDGFVDD 120

Query: 171 VLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVK 230
           VLV+GKPWASGVQE LTGS+VFVC+HGSRDKRCGVCGP LIEK    I+SRGL D++FV 
Sbjct: 121 VLVSGKPWASGVQEVLTGSHVFVCAHGSRDKRCGVCGPVLIEKLKEGIESRGLNDKVFVS 180

Query: 231 PCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVL 290
            CSH+GGHKYAGNLI+YSP+SEGK MGHWYGYVTP+DVP ILDQHI KG +IER+WR  +
Sbjct: 181 ACSHVGGHKYAGNLIIYSPNSEGKTMGHWYGYVTPEDVPEILDQHIEKGIVIERIWRGQM 240

Query: 291 YIFCLHGIFLG 301
            +    G  +G
Sbjct: 241 GLSTEEGEKVG 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446704|ref|XP_004141111.1| PREDICTED: altered inheritance of mitochondria protein 32-like [Cucumis sativus] gi|449489582|ref|XP_004158355.1| PREDICTED: altered inheritance of mitochondria protein 32-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 213/290 (73%), Gaps = 11/290 (3%)

Query: 1   MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTI 60
           MR+  P R L   + A    R   L      L  SH     R ++ IL+  +++   ST 
Sbjct: 40  MRLWRPHRSL---SFAGKTPRESLLFFRSTNLSSSH-----RIQSPILLHFSESRRFSTF 91

Query: 61  SAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASA 120
           S  DD K+GF+R EMY+  LAGTV+ Y RHVFLC++ PE+W  RVE SD D LPKLL+SA
Sbjct: 92  SIADDEKHGFSRPEMYRSNLAGTVSAYERHVFLCYRSPEVWPTRVEDSDADLLPKLLSSA 151

Query: 121 LKTRKDDMTVKSLMTVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
           +K  K++++ ++ +T+C  GEGT   DGDVLIFPEM+KY GLK+ DV+ FV+DVL+NGK 
Sbjct: 152 IKAHKNEISFRTKLTICEAGEGTECSDGDVLIFPEMVKYRGLKDKDVEMFVEDVLLNGKL 211

Query: 178 WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGG 237
           W SGV + L GSY+FVC+HGSRDKRCGVCGP L+ K   EI+ RGLKDQ +V PCSHIGG
Sbjct: 212 WDSGVYDVLAGSYIFVCAHGSRDKRCGVCGPVLVSKLKEEIELRGLKDQTYVYPCSHIGG 271

Query: 238 HKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           HKYAGNLI+YSPDS+G+IMGHWYGYVTPDDVP +LD+HI KGEI+ERLWR
Sbjct: 272 HKYAGNLIIYSPDSDGRIMGHWYGYVTPDDVPELLDKHIGKGEIVERLWR 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452328|ref|XP_002273410.1| PREDICTED: altered inheritance of mitochondria protein 32 [Vitis vinifera]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/290 (62%), Positives = 216/290 (74%), Gaps = 8/290 (2%)

Query: 1   MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTI 60
           MRIG     LI       A  Y      +P L    +  P +T    +    D  +  + 
Sbjct: 1   MRIGHRRGTLI-----FVAQHYFSFTSLQPRLHRFGSHFPLKTLVFSMAEAVDNPSSFSG 55

Query: 61  SAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASA 120
            +++D KYGF REEMYK  +AGTV+ Y RHVFLCFK PE W+ RVE SD+D LPKL +SA
Sbjct: 56  ESDEDFKYGFQREEMYKASIAGTVDAYDRHVFLCFKSPEDWLPRVEGSDSDLLPKLFSSA 115

Query: 121 LKTRKDDMTVKSLMTVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
           LK+RK+D+ VK+  T+C G +GT   DGDVLIFPEMIKY+ LK+SDVDSFVDDV+VNGKP
Sbjct: 116 LKSRKNDIAVKTKFTICEGRDGTEFSDGDVLIFPEMIKYKSLKDSDVDSFVDDVIVNGKP 175

Query: 178 WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGG 237
           WASG+QE LTGS++FVC+HGSRDKRCGVCGP LI+K   EID RGL DQ+FV PCSH+GG
Sbjct: 176 WASGMQEVLTGSHIFVCAHGSRDKRCGVCGPVLIQKLKEEIDLRGLGDQVFVTPCSHVGG 235

Query: 238 HKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           HKYAGNLI+YSP+ EGKIMGHWYGYVTP+DVP +LDQHI KGEIIER+WR
Sbjct: 236 HKYAGNLIIYSPNPEGKIMGHWYGYVTPNDVPELLDQHIGKGEIIERIWR 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688845|ref|NP_566821.2| Sucrase/ferredoxin-like protein [Arabidopsis thaliana] gi|332643817|gb|AEE77338.1| Sucrase/ferredoxin-like protein [Arabidopsis thaliana]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 187/245 (76%), Gaps = 3/245 (1%)

Query: 43  TRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWV 102
            R +  +      N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+
Sbjct: 34  VRKKTSMAEEVAENVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWL 93

Query: 103 ARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162
            RVE   T+ LP+  A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ ++++
Sbjct: 94  PRVE---TEGLPQRFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDT 150

Query: 163 DVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRG 222
           DVD+FV+DVLV GK W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRG
Sbjct: 151 DVDAFVEDVLVKGKTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRG 210

Query: 223 LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEII 282
           L D+IFV PCSHIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII
Sbjct: 211 LSDKIFVLPCSHIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEII 270

Query: 283 ERLWR 287
           + L R
Sbjct: 271 QNLSR 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423923|dbj|BAH19925.1| AT3G27570 [Arabidopsis thaliana]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 187/245 (76%), Gaps = 3/245 (1%)

Query: 43  TRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWV 102
            R +  +      N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+
Sbjct: 26  VRKKTSMAEEVAENVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWL 85

Query: 103 ARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162
            RVE   T+ LP+  A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ ++++
Sbjct: 86  PRVE---TEGLPQRFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDT 142

Query: 163 DVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRG 222
           DVD+FV+DVLV GK W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRG
Sbjct: 143 DVDAFVEDVLVKGKTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRG 202

Query: 223 LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEII 282
           L D+IFV PCSHIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII
Sbjct: 203 LSDKIFVLPCSHIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEII 262

Query: 283 ERLWR 287
           + L R
Sbjct: 263 QNLSR 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110736944|dbj|BAF00429.1| sucrose cleavage like protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 187/245 (76%), Gaps = 3/245 (1%)

Query: 43  TRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWV 102
            R +  +      N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+
Sbjct: 31  VRKKTSMAEEVAENVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWL 90

Query: 103 ARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162
            RVE   T+ LP+  A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ ++++
Sbjct: 91  PRVE---TEGLPQRFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDT 147

Query: 163 DVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRG 222
           DVD+FV+DVLV GK W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRG
Sbjct: 148 DVDAFVEDVLVKGKTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRG 207

Query: 223 LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEII 282
           L D+IFV PCSHIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII
Sbjct: 208 LSDKIFVLPCSHIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEII 267

Query: 283 ERLWR 287
           + L R
Sbjct: 268 QNLSR 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16604338|gb|AAL24175.1| AT3g27570/MMJ24_12 [Arabidopsis thaliana] gi|19699188|gb|AAL90960.1| AT3g27570/MMJ24_12 [Arabidopsis thaliana]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 184/234 (78%), Gaps = 3/234 (1%)

Query: 54  TNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTL 113
             N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+ RVE   T+ L
Sbjct: 6   AENVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWLPRVE---TEGL 62

Query: 114 PKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLV 173
           P+  A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ ++++DVD+FV+DVLV
Sbjct: 63  PQRFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDTDVDAFVEDVLV 122

Query: 174 NGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCS 233
            GK W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRGL D+IFV PCS
Sbjct: 123 KGKTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRGLSDKIFVLPCS 182

Query: 234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           HIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII+ L R
Sbjct: 183 HIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEIIQNLSR 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818354|ref|XP_002877060.1| AT3g27570/MMJ24_12 [Arabidopsis lyrata subsp. lyrata] gi|297322898|gb|EFH53319.1| AT3g27570/MMJ24_12 [Arabidopsis lyrata subsp. lyrata]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 186/234 (79%), Gaps = 4/234 (1%)

Query: 54  TNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTL 113
             N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+ RVE   T+ L
Sbjct: 6   AENVNAVPVSEDELYGFKRPEMYSGTLAGSVGPYGRHVFLCYKSHETWLPRVE---TEGL 62

Query: 114 PKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLV 173
           P+  A + K RK D  V++ +TVCGGGE +DGDVLIFPEM++Y+ ++++DVD+FV+DVLV
Sbjct: 63  PQRFAKSFKDRKADFGVETKLTVCGGGE-SDGDVLIFPEMVRYKAIQDTDVDAFVEDVLV 121

Query: 174 NGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCS 233
            GKPW SGVQE L+GS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRGL ++I V PCS
Sbjct: 122 KGKPWTSGVQEELSGSFVFVCAHGSRDKRCGVCGPVLMEKFQQEIGSRGLSEKIVVLPCS 181

Query: 234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           HIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII+ L R
Sbjct: 182 HIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEIIQNLSR 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522640|ref|XP_004168334.1| PREDICTED: altered inheritance of mitochondria protein 32-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 152/238 (63%), Positives = 191/238 (80%), Gaps = 4/238 (1%)

Query: 54  TNNMSTISAE-DDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDT 112
           ++N+ST+S   DD  YGF REEMY+  LAGTV  Y RHVFLC+K PE W + +E+SD+D 
Sbjct: 3   SDNLSTLSGTADDDTYGFHREEMYQSNLAGTVTAYDRHVFLCYKTPESWPSHLESSDSDL 62

Query: 113 LPKLLASALKTRKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKESDVDSFVD 169
           LPKLL++A+K RKDD+++K+ +T+  G + T    GDVLIFP+MIKY GLK+SDVD FVD
Sbjct: 63  LPKLLSAAIKARKDDISLKTKLTMFSGRDETGFSYGDVLIFPDMIKYSGLKDSDVDGFVD 122

Query: 170 DVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFV 229
           DVLVN KPWASGV E  T S+VFVC H SRD+RCGVCGP L++K + EI+ RGLKDQ++V
Sbjct: 123 DVLVNNKPWASGVPEVFTSSHVFVCVHASRDRRCGVCGPILVQKLDEEIELRGLKDQVYV 182

Query: 230 KPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
            PCSHIGGHKYAGNLI+Y P ++GK  GHWYGYVTP+D+P + +QHIAKGE++ERL R
Sbjct: 183 SPCSHIGGHKYAGNLIIYQPGADGKTTGHWYGYVTPEDLPELFEQHIAKGEVVERLLR 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2091433	379	AT3G27570 "AT3G27570" [Arabido	0.755	0.604	0.620	4.2e-79
TAIR|locus:2168733	333	AT5G40510 "AT5G40510" [Arabido	0.752	0.684	0.564	1.2e-74
TAIR|locus:2133842	443	AT4G26620 "AT4G26620" [Arabido	0.739	0.505	0.519	1.2e-65
TAIR|locus:2178383	413	AT5G55900 "AT5G55900" [Arabido	0.719	0.527	0.515	6.2e-62
DICTYBASE|DDB_G0270420	321	DDB_G0270420 "sucraseferredoxi	0.699	0.660	0.360	1.3e-31
CGD|CAL0000907	330	orf19.612 [Candida albicans (t	0.349	0.321	0.377	9.7e-17
UNIPROTKB|Q59X65	330	CaO19.612 "Putative uncharacte	0.349	0.321	0.377	9.7e-17
CGD|CAL0003160	308	orf19.158 [Candida albicans (t	0.303	0.298	0.388	1.7e-11
UNIPROTKB|Q59JR9	308	APD1 "Potential actin patch lo	0.303	0.298	0.388	1.7e-11
SGD|S000000355	316	APD1 "Protein of unknown funct	0.293	0.281	0.36	3.1e-10

TAIR|locus:2091433 AT3G27570 "AT3G27570" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 144/232 (62%), Positives = 172/232 (74%)

Query:    56 NMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPK 115
             N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+ RVE   T+ LP+
Sbjct:    47 NVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWLPRVE---TEGLPQ 103

Query:   116 LLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEXXXXXXXXXXXXNG 175
               A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ +++             G
Sbjct:   104 RFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDTDVDAFVEDVLVKG 163

Query:   176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
             K W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRGL D+IFV PCSHI
Sbjct:   164 KTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRGLSDKIFVLPCSHI 223

Query:   236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             GGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII+ L R
Sbjct:   224 GGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEIIQNLSR 275

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2168733 AT5G40510 "AT5G40510" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 131/232 (56%), Positives = 175/232 (75%)

Query:    56 NMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPK 115
             N++++ A +D +YGF R EMY   +A ++  Y RHVF+ +K PE W++ VE    + LP+
Sbjct:     6 NLNSVPASEDTEYGFKRPEMYSTNIANSITSYARHVFVLYKTPEAWLSHVEE---EGLPQ 62

Query:   116 LLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEXXXXXXXXXXXXNG 175
               A+ LK RK D+ V++ + VC GG G+DGDVLIFP+MI+Y+G+K+            NG
Sbjct:    63 RFATLLKDRKSDLLVQTKLNVCEGG-GSDGDVLIFPDMIRYKGVKDTDVEGFFEDVLVNG 121

Query:   176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
             KPW+SG+QE ++G++VFVC+H SRDKRCGVCGP ++E+F  EI SRGL DQI +K CSH+
Sbjct:   122 KPWSSGIQEEISGTFVFVCTHASRDKRCGVCGPVILERFKQEIGSRGLSDQITLKRCSHV 181

Query:   236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             G HKYAGNLI++ PDS GKI G+WYGYVTPDDVP +LDQHIAKGEII+R+WR
Sbjct:   182 GQHKYAGNLIIFCPDSAGKITGNWYGYVTPDDVPELLDQHIAKGEIIQRIWR 233

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2133842 AT4G26620 "AT4G26620" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 118/227 (51%), Positives = 159/227 (70%)

Query:    64 DDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT 123
             +DA +GF R +   E+LAGTV  Y RHVFLC+K P +W AR+EA++ D LP+LL++A+  
Sbjct:    59 NDADFGFARPDFRSEQLAGTVQFYERHVFLCYKKPSVWPARIEAAEFDRLPRLLSAAVSA 118

Query:   124 RKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKEXXXXXXXXXXXXNGKPWAS 180
             RK  M  ++ +T+C G +GT+   GDVLIFP+MI+Y  L                  W  
Sbjct:   119 RKGSMKKETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVETFVEEVLVKDGEWLP 178

Query:   181 GVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKY 240
             G  E L GSYVFVCSHGSRD+RCGVCGP+L+ +F  E++  GL+ ++ + PCSHIGGHKY
Sbjct:   179 GNPELLKGSYVFVCSHGSRDRRCGVCGPSLVSRFREELEFHGLQGKVSISPCSHIGGHKY 238

Query:   241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             AGN+I+Y  +   ++ GHWYGYVTP+DVP +L+QHI KGEI++RLWR
Sbjct:   239 AGNVIIYRSNINREVTGHWYGYVTPEDVPILLEQHINKGEIVDRLWR 285

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

TAIR|locus:2178383 AT5G55900 "AT5G55900" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 114/221 (51%), Positives = 152/221 (68%)

Query:    70 FTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMT 129
             F+  +   +KLAGTV  Y RHVFLC+K P +W AR+EAS+ D LP+LL+S +  RK  M 
Sbjct:    53 FSDVDFALDKLAGTVQFYERHVFLCYKKPSVWPARIEASEFDRLPRLLSSVISARKSSMK 112

Query:   130 VKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKEXXXXXXXXXXXXNGKPWASGVQEGL 186
              ++L+T+C G +G++   GDVLIFP+MI+Y  L               G  W  G  E L
Sbjct:   113 KETLLTICEGHDGSETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKGVEWLPGNPESL 172

Query:   187 TGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIV 246
             + SYVFVC HGSRD+RCGVCGP+L+ +F  EIDS GL+ ++ V PCSHIGGHKY G++I+
Sbjct:   173 SSSYVFVCCHGSRDRRCGVCGPSLVSRFREEIDSCGLRGEVSVSPCSHIGGHKYTGDVII 232

Query:   247 YSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             Y  +   ++ GHWYG VT +DVP +L+QHI KGEI++RLWR
Sbjct:   233 YGLNINQRVTGHWYGCVTLEDVPLLLEQHINKGEIVDRLWR 273

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0270420 DDB_G0270420 "sucraseferredoxin-like family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 84/233 (36%), Positives = 126/233 (54%)

Query:    66 AKYGFTREEMY---KEKLAGTVNPYGRHVFLCFKGP-EMWVARVEASDTDTLPKLLASAL 121
             AK GF R EM    +E    +++ Y RH F+C   P E W A++ ++ T  L       +
Sbjct:    85 AKCGFCRPEMVDSNRETPNNSISTYHRHYFICTGIPSEEWPAKLYSA-TPLLESF-QQVM 142

Query:   122 KTRKDDMTVKSLMTVCGGGE-GTDG-DVLIFPEMIKYEGLKEXXXXXXXXXXXXNG---- 175
             K  +++     ++          D  DV+IFPEM+K  GL              N     
Sbjct:   143 KKYENNPRKNQIINATDIQPLNKDSLDVIIFPEMVKLVGLTPNTMEKVLTYFQDNDTIDL 202

Query:   176 KPWASGVQ-EGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSH 234
               +   +Q E L+G Y+F+C+H  +D+RCG CGP L+++   +I  R L+ +I V   SH
Sbjct:   203 STFPMEIQVEQLSGKYIFICTHKQKDQRCGYCGPILVDQLRDQIKERSLEKEIQVFGTSH 262

Query:   235 IGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             +GGHKYAGN++V+ P       G+WYGYVTPDDV +I+D  I+ GE+I++L R
Sbjct:   263 VGGHKYAGNVLVFPP-------GNWYGYVTPDDVSSIIDSTIS-GEVIQKLHR 307

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0000907 orf19.612 [Candida albicans (taxid:5476)]

 Score = 208 (78.3 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 40/106 (37%), Positives = 58/106 (54%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA 241
             +++ L    + +C H  RD RCG+  P L  +FN  +    L+D I+    SH+GGH YA
Sbjct:   219 IEDELDKDLLVICGHAKRDLRCGIIAPQLESEFNQVLVRHNLQDTIYTGQVSHVGGHAYA 278

Query:   242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             GN++ Y  D +      WYG V P DV  I++  I   EII+ L+R
Sbjct:   279 GNVLYYPKDCQTSKDFIWYGRVFPKDVQGIVESTIINKEIIKDLFR 324

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59X65 CaO19.612 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 208 (78.3 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 40/106 (37%), Positives = 58/106 (54%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA 241
             +++ L    + +C H  RD RCG+  P L  +FN  +    L+D I+    SH+GGH YA
Sbjct:   219 IEDELDKDLLVICGHAKRDLRCGIIAPQLESEFNQVLVRHNLQDTIYTGQVSHVGGHAYA 278

Query:   242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
             GN++ Y  D +      WYG V P DV  I++  I   EII+ L+R
Sbjct:   279 GNVLYYPKDCQTSKDFIWYGRVFPKDVQGIVESTIINKEIIKDLFR 324

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003160 orf19.158 [Candida albicans (taxid:5476)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPAL---IEKFNAEIDS-RGLKDQ----IFVKPCS 233
             +   L  S+VF CSH +RDKRCG+  P +   I+ +  E+D  R   D     I  +  +
Sbjct:   187 ISPNLNQSFVFFCSHTTRDKRCGITAPIMKREIDNYLQELDLIRNFGDYRPNGIQTEFIN 246

Query:   234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHI 276
             HIGGHKYA N+I+Y   S GK +  W G   P+++  I+D+ I
Sbjct:   247 HIGGHKYAANVIIYLKKS-GKNI--WLGLCKPNNIKPIVDECI 286

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59JR9 APD1 "Potential actin patch localization protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPAL---IEKFNAEIDS-RGLKDQ----IFVKPCS 233
             +   L  S+VF CSH +RDKRCG+  P +   I+ +  E+D  R   D     I  +  +
Sbjct:   187 ISPNLNQSFVFFCSHTTRDKRCGITAPIMKREIDNYLQELDLIRNFGDYRPNGIQTEFIN 246

Query:   234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHI 276
             HIGGHKYA N+I+Y   S GK +  W G   P+++  I+D+ I
Sbjct:   247 HIGGHKYAANVIIYLKKS-GKNI--WLGLCKPNNIKPIVDECI 286

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000000355 APD1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 165 (63.1 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:   189 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL-KDQ-------IFVKPCSHIGGHKY 240
             ++VF+CSH +RDKRCG+  P L + F++++   GL +D        + +   +H+GGHK+
Sbjct:   202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKF 261

Query:   241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 280
             A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct:   262 AANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I2158 hypothetical protein (356 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam06999	218	pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like	1e-69
cd03062	97	cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredo	2e-39
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	3e-18
COG3411	64	COG3411, COG3411, Ferredoxin [Energy production an	2e-07
COG4759	316	COG4759, COG4759, Uncharacterized protein conserve	1e-06

>gnl|CDD|219260 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like

 Score =  215 bits (549), Expect = 1e-69
 Identities = 79/224 (35%), Positives = 112/224 (50%), Gaps = 24/224 (10%)

Query: 79  KLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCG 138
            L GT   Y RH+ +    P  W           + + L++ L  RK  + V++ +T+  
Sbjct: 1   PLIGTAKTYDRHLLVET-SPGPWPHEACDEKD--VLQGLSALLAARKKALGVRTPLTIAP 57

Query: 139 GGE----GTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP-----------WASGVQ 183
           G E    G+ GDVLI P+ I  +   E     FV+D+L    P              G  
Sbjct: 58  GREAVSYGSKGDVLILPDFIPIKLFAEFLKQEFVEDLLDLDLPALGPGKLLAFDDLEGGA 117

Query: 184 EGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGN 243
           E +    + VC+HG RDKRCG+ GP L ++F AE+   GL     V  CSHIGGHK+A N
Sbjct: 118 EDIHDRIILVCTHGKRDKRCGITGPPLYKEFRAELADLGLYRDR-VWECSHIGGHKFAPN 176

Query: 244 LIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
           +I++         G WYG VTP+ VPAI+D  I  G+I++ L+R
Sbjct: 177 VIIFK----KTPTGIWYGRVTPEHVPAIVD-EIGDGKILKELYR 215

This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity. Length = 218

>gnl|CDD|239360 cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

 Score =  133 bits (336), Expect = 2e-39
 Identities = 47/100 (47%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 188 GSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVY 247
              V VC+HG RDKRCG+CGP L  +  AE+   G    + V   SH+GGHK+AGN+I+Y
Sbjct: 1   DPLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIY 59

Query: 248 SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWR 287
                    G WYG VTP+ VP I+D+ I  G+II  L R
Sbjct: 60  PKGD-----GIWYGRVTPEHVPPIVDRLILGGKIIPELRR 94

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd. Length = 97

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 190 YVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS 248
           ++ VC+       CG+ G   L+E    E+  RG   ++ V+    +G    A  ++VY 
Sbjct: 2   HILVCTGT----ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYP 57

Query: 249 PDSEGKIMGHWYGYVTPDDVPAILDQH 275
                   G WYG VTP+DV  I+++ 
Sbjct: 58  D-------GVWYGRVTPEDVEEIVEEL 77

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

>gnl|CDD|225945 COG3411, COG3411, Ferredoxin [Energy production and conversion]

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           G ++V  P+      G WY  V P+D   I+  H+  G  +E L
Sbjct: 17  GPVLVVYPE------GVWYTRVDPEDARRIVQSHLLGGRPVEEL 54

Length = 64

>gnl|CDD|227101 COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 148 LIFPEMIKYEGL-KESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVC 206
            +F    K E L  ++++   +  +L+ GK  A           + VC+HG+ D  C   
Sbjct: 90  KLFAGYSKQEFLVPDAELGVLILALLLQGKELAQFDIYPQHTRDILVCTHGNVDVCCARF 149

Query: 207 GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLI 245
           G    ++  A+     L + + V   SH GGH++A  LI
Sbjct: 150 GYPFYQQLRAQYADLNL-ENLRVWQSSHFGGHRFAPTLI 187

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	100.0
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.91
COG4759	316	Uncharacterized protein conserved in bacteria cont	99.87
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	99.68
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.68
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	99.58
COG3411	64	Ferredoxin [Energy production and conversion]	99.55
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.46
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.46
PRK07539	154	NADH dehydrogenase subunit E; Validated	99.43
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	99.42
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.39
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	99.38
COG3411	64	Ferredoxin [Energy production and conversion]	99.21
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	99.17
PRK05988	156	formate dehydrogenase subunit gamma; Validated	99.15
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	99.14
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	99.06
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.02
PRK12373	400	NADH dehydrogenase subunit E; Provisional	98.91
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	98.81
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	98.77
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	98.64
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	98.39
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	98.33
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	98.22
PRK07539	154	NADH dehydrogenase subunit E; Validated	98.21
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	98.12
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	98.0
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	97.63
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	97.43
COG5469	143	Predicted metal-binding protein [Function unknown]	97.38
PRK05988	156	formate dehydrogenase subunit gamma; Validated	97.33
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	97.26
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	96.6
PRK12373	400	NADH dehydrogenase subunit E; Provisional	96.33
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	94.97
PF07293	78	DUF1450: Protein of unknown function (DUF1450); In	93.37
PRK13669	78	hypothetical protein; Provisional	91.31
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	83.11
COG5469	143	Predicted metal-binding protein [Function unknown]	80.52

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=100.00  E-value=7.5e-41  Score=302.92  Aligned_cols=206  Identities=42%  Similarity=0.720  Sum_probs=165.2

Q ss_pred             CCCCCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCC----------CCCCCeEE
Q 022068           79 KLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGG----------EGTDGDVL  148 (303)
Q Consensus        79 pL~GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~----------c~~gp~vl  148 (303)
                      ||+||++.|.+||+|++ ++++|+++.+++. ..+++.|.++++........+..+++..+.          ......++
T Consensus         1 pL~Gta~~~~~hvli~~-~~~~W~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   78 (230)
T PF06999_consen    1 PLIGTAPPYDRHVLIET-GPGDWPSDALDSK-SSLPQALSAALKARKKKLGVRFLLIRRPGRISNSSLPEPSRPKPGDVL   78 (230)
T ss_pred             CcCcccCcCcEEEEEEc-CCCCCCcchhcCC-cchHHHHHHHHHHhhcccCccccceecCCcccccccccccCCCCceEE
Confidence            79999999999999988 6899999776632 467888888887765554455544444433          23356899


Q ss_pred             EecCcEEeccCCCCchhHHHHHHhhCCCC--------------CCCCCCCCCCCcEEEEcCCCCCCCccccccHHHHHHH
Q 022068          149 IFPEMIKYEGLKESDVDSFVDDVLVNGKP--------------WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKF  214 (303)
Q Consensus       149 V~Pd~i~Y~~v~~~dvd~~v~~~L~~g~p--------------~~~~~~e~~~~~~IlVC~~~~rD~rC~~~G~~l~~~l  214 (303)
                      |||++++|..+.....+++++.++.....              ......+...+++||||+|++||+|||+.|+.|+++|
T Consensus        79 v~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVCtHg~RD~rCg~~Gp~l~~~l  158 (230)
T PF06999_consen   79 VFPDFKIYRFVTRSNVQEFVEDLLDLDLPAVTALPRQSSAAPDKLPFPREPPDKPLILVCTHGKRDKRCGILGPPLAREL  158 (230)
T ss_pred             EEcccEEeccccchhhHHHHHHhccccccccccccCccccccccCCCCcccCCCCEEEEcCCCCcCCchhcccHHHHHHH
Confidence            99999999988888888888765543322              0111223457899999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCCCCHHHHHHHHHHCCccccceeeecc
Q 022068          215 NAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVL  290 (303)
Q Consensus       215 ~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp~dv~~Iv~~~l~~g~~v~~l~rG~~  290 (303)
                      ++++.+.++...+ ||++||+|||+||||||+|..   ++.+|+|||+|+|++|+.||++++.+|++++++|||+|
T Consensus       159 ~~~~~~~~l~~~~-V~~iSHiGGHkfAgNvIiy~~---~~p~g~wyGrv~p~~v~~iv~~t~~~g~vi~~~~RG~~  230 (230)
T PF06999_consen  159 EKELRERGLSRDR-VWEISHIGGHKFAGNVIIYSK---PKPDGIWYGRVTPEDVEGIVDATILDGKVIPELYRGRM  230 (230)
T ss_pred             HHHhhhcCCccce-EEEecccccceecCeEEEEec---CCCcEEEEEeeCHHHHHHHHHHHHhCCcCcCccCcCCC
Confidence            9999999987644 999999999999999999920   01159999999999999999998999999999999997

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.91  E-value=2.5e-24  Score=170.58  Aligned_cols=95  Identities=47%  Similarity=0.913  Sum_probs=83.6

Q ss_pred             CcEEEEcCCCCCCCccccccHHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCC--CCCCCcccEEEeecCC
Q 022068          188 GSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSP--DSEGKIMGHWYGYVTP  265 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p--~~~~~~~g~wYg~Vtp  265 (303)
                      .++||||+|.+||.||+..|++|+++|++++.++|. ++|.|+.+||+|||.++ |+|+++|  +      ++||++|+|
T Consensus         1 ~~~ilVCth~rrd~~C~~~g~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~g-p~vvvyP~~~------g~wy~~v~p   72 (97)
T cd03062           1 DPLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFA-GNVIIYPKGD------GIWYGRVTP   72 (97)
T ss_pred             CCEEEEeCCCCCCcChhhcCHHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcC-CEEEEEeCCC------eeEEeecCH
Confidence            368999999999999999999999999999999984 56999999999655555 5555566  5      899999999


Q ss_pred             CCHHHHHHHHHHCCccccceeeecc
Q 022068          266 DDVPAILDQHIAKGEIIERLWRFVL  290 (303)
Q Consensus       266 ~dv~~Iv~~~l~~g~~v~~l~rG~~  290 (303)
                      +|+++||++|+.+|++++++.|+.+
T Consensus        73 ~~v~~Iv~~hl~~g~~v~~~~~~~~   97 (97)
T cd03062          73 EHVPPIVDRLILGGKIIPELRRGGI   97 (97)
T ss_pred             HHHHHHHHHHhcCCcCCcccccCCC
Confidence            9999999999999999999998763

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.6e-22  Score=182.67  Aligned_cols=209  Identities=23%  Similarity=0.378  Sum_probs=146.5

Q ss_pred             cCCCCCCCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCC--C-CeEEEe--
Q 022068           76 YKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGT--D-GDVLIF--  150 (303)
Q Consensus        76 ~~epL~GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~--g-p~vlV~--  150 (303)
                      ..|+++||+..++.  ||+.|.|.+|+++..++  ..+++.|.+.++..-....+ ..+.+-..+...  + ..+++|  
T Consensus        13 ~~EDpIGTa~~~~~--ylliE~pqPW~~~~~~s--~~ip~~l~dl~~~~~~~~~~-~~l~i~~d~ey~~~g~tr~~~y~~   87 (316)
T COG4759          13 NGEDPIGTANTRDG--YLLIEAPQPWTENVLDS--KPIPQNLQDLLEELYKAGGV-IPLAIAPDREYSQPGYTRVLIYRR   87 (316)
T ss_pred             cCCCCCCcccccce--EEEEeCCCCcccccccC--CCCChhHHHHHHHHHhcCCc-eeEEEeeccccCCCCceEEEEEec
Confidence            48999999999888  88889999999987764  45555555554432211112 222222222211  2 245555  


Q ss_pred             cCcEE--ec----cCCCCchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEcCCCCCCCccccccHHHHHHHHHHHHhcCCC
Q 022068          151 PEMIK--YE----GLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLK  224 (303)
Q Consensus       151 Pd~i~--Y~----~v~~~dvd~~v~~~L~~g~p~~~~~~e~~~~~~IlVC~~~~rD~rC~~~G~~l~~~l~~~l~~~gl~  224 (303)
                      |..+.  |.    -|+......++...+.+|+....-...+...+.|+||||+++|+||+..|.++++.+++..+...+.
T Consensus        88 ~~~~fa~y~K~E~lv~d~~~~~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn~D~cCarfG~P~Y~~~r~~~a~l~~~  167 (316)
T COG4759          88 PAKLFAGYSKQEFLVPDAELGVLILALLLQGKELAQFDIYPQHTRDILVCTHGNVDVCCARFGYPFYQQLRAQYADLNLE  167 (316)
T ss_pred             HHHhhhhheeeEEecccchhhhhHHHHhcCCccchhhccchhhhceEEEecCCChhhhhhhcCcHHHHHHHHhhhhcccc
Confidence            32211  11    1333444455555566665443223333466789999999999999999999999999999988776


Q ss_pred             CcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCCCCHHHHHHHHHHCCccccceeeeccCcccccce
Q 022068          225 DQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVLYIFCLHGI  298 (303)
Q Consensus       225 ~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp~dv~~Iv~~~l~~g~~v~~l~rG~~~~~~~~~~  298 (303)
                       +++||++||+|||.||..+|.++       +|.+||.++++....||... ..-+-++..+||+.+|+.+-||
T Consensus       168 -~lRvWq~SHfgGHrFAPTlidlP-------~GqyyG~Ld~~~~~~l~~r~-gdvk~L~~~YRGWg~L~~~~QI  232 (316)
T COG4759         168 -NLRVWQSSHFGGHRFAPTLIDLP-------QGQYYGHLDPESLDSLLTRT-GDVKQLKPFYRGWGGLPKFEQI  232 (316)
T ss_pred             -ceEEEEecccCccccCchhhcCC-------CCceeeecCHHHHHHHHhcc-CchhhhhhhccCCcCCCHHHHH
Confidence             49999999999999999988886       48999999999999999754 2223488899999999998876

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=99.68  E-value=9.1e-17  Score=125.83  Aligned_cols=77  Identities=29%  Similarity=0.421  Sum_probs=71.4

Q ss_pred             EEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeC-CCCCCCccc-EEEeecCCC
Q 022068          190 YVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS-PDSEGKIMG-HWYGYVTPD  266 (303)
Q Consensus       190 ~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~-p~~~~~~~g-~wYg~Vtp~  266 (303)
                      +|+||+++.    |..+| .+++++|+++++++|+  +++|.+|||+ |+|+.||+|.+. |+      + +.|++|+|+
T Consensus         2 ~I~Vc~gT~----ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~-G~C~~ePlV~V~~p~------g~v~Y~~V~~e   68 (92)
T cd03063           2 RIYVPRDAA----ALALGADEVAEAIEAEAAARGL--AATIVRNGSR-GMYWLEPLVEVETPG------GRVAYGPVTPA   68 (92)
T ss_pred             EEEEeCChh----hhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCc-eecCCCCEEEEEeCC------CcEEEEeCCHH
Confidence            699999998    88888 9999999999999999  5999999999 899999999986 76      5 999999999


Q ss_pred             CHHHHHHHHHHCC
Q 022068          267 DVPAILDQHIAKG  279 (303)
Q Consensus       267 dv~~Iv~~~l~~g  279 (303)
                      ||++||++|+.+.
T Consensus        69 dv~~Iv~~~~~~~   81 (92)
T cd03063          69 DVASLLDAGALEG   81 (92)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999998854

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.68  E-value=9.7e-17  Score=120.85  Aligned_cols=76  Identities=33%  Similarity=0.670  Sum_probs=71.2

Q ss_pred             cEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCCCC
Q 022068          189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD  267 (303)
Q Consensus       189 ~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp~d  267 (303)
                      .+|+||++++    |..+| ++|+++|+++++..++++.|+|..++|+ |.|..||+|.++|+      +.||++|++++
T Consensus         1 ~~I~VC~~~~----C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Cl-g~C~~~P~v~i~~~------~~~y~~v~~~~   69 (77)
T cd02980           1 HHILVCTGTA----CGLRGAEELLEALEKELGIRGGDGRVTVERVGCL-GACGLAPVVVVYPD------GVWYGRVTPED   69 (77)
T ss_pred             CEEEEccCCC----cccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCc-CcccCCCEEEEeCC------CeEEccCCHHH
Confidence            4799999998    99997 9999999999999999888999999999 89999999999986      79999999999


Q ss_pred             HHHHHHHH
Q 022068          268 VPAILDQH  275 (303)
Q Consensus       268 v~~Iv~~~  275 (303)
                      +++||++|
T Consensus        70 ~~~il~~~   77 (77)
T cd02980          70 VEEIVEEL   77 (77)
T ss_pred             HHHHHHhC
Confidence            99999864

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=99.58  E-value=4.3e-15  Score=113.29  Aligned_cols=74  Identities=22%  Similarity=0.421  Sum_probs=67.0

Q ss_pred             CcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCC----CCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEee
Q 022068          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl----~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~  262 (303)
                      +++|+||+++.    |..+| .+++++|++++..+++    ++.|.|..++|+ |.|..||+|.++        +.||++
T Consensus         1 ~~~v~vC~~~~----C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~Cl-G~C~~gP~v~v~--------g~~y~~   67 (80)
T cd03064           1 KHVIRVCTGTA----CHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECL-GACDLAPVMMIN--------DDVYGR   67 (80)
T ss_pred             CEEEEECCCcH----HHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCc-CcCCCCCEEEEC--------CEEECC
Confidence            46899999998    99999 9999999999986633    667999999999 899999999996        799999


Q ss_pred             cCCCCHHHHHHH
Q 022068          263 VTPDDVPAILDQ  274 (303)
Q Consensus       263 Vtp~dv~~Iv~~  274 (303)
                      |||+++++|+++
T Consensus        68 vt~~~i~~i~~~   79 (80)
T cd03064          68 LTPEKVDAILEA   79 (80)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999975

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.55  E-value=3.4e-15  Score=107.62  Aligned_cols=58  Identities=29%  Similarity=0.503  Sum_probs=54.2

Q ss_pred             cEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCCCCHHHHHHHHHHCCccccceeeecc
Q 022068          226 QIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRFVL  290 (303)
Q Consensus       226 ~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp~dv~~Iv~~~l~~g~~v~~l~rG~~  290 (303)
                      .+.+..+||+ |.|..||+++++|+      |+||++|+|+|+++||++|+.+|++++++..++.
T Consensus         2 ~i~~t~tgCl-~~C~~gPvl~vYpe------gvWY~~V~p~~a~rIv~~hl~~Gr~Ve~~~~~~~   59 (64)
T COG3411           2 SIRVTRTGCL-GVCQDGPVLVVYPE------GVWYTRVDPEDARRIVQSHLLGGRPVEELIYHTG   59 (64)
T ss_pred             ceEEeecchh-hhhccCCEEEEecC------CeeEeccCHHHHHHHHHHHHhCCCcchhhcccCC
Confidence            4889999999 89999999999998      8999999999999999999999999999877653

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.46  E-value=1.2e-13  Score=105.60  Aligned_cols=74  Identities=19%  Similarity=0.345  Sum_probs=66.9

Q ss_pred             CcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHh----cCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEee
Q 022068          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDS----RGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~----~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~  262 (303)
                      +++|.||.+..    |..+| .+|+++|+++|..    ...++.+.|..++|+ |.|..||+|++.        +.||++
T Consensus         1 ~~~i~vC~~~~----C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~Cl-G~C~~gP~~~v~--------~~~~~~   67 (80)
T cd03081           1 RHVLKLCRAEA----CQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCL-GLCACSPAAMID--------GEVHGR   67 (80)
T ss_pred             CeEEEEcCChH----HHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeec-CccCCCCEEEEC--------CEEECC
Confidence            46899999999    99999 9999999999973    355678999999999 899999999995        799999


Q ss_pred             cCCCCHHHHHHH
Q 022068          263 VTPDDVPAILDQ  274 (303)
Q Consensus       263 Vtp~dv~~Iv~~  274 (303)
                      |+|++|++|+++
T Consensus        68 ~~~e~i~~il~~   79 (80)
T cd03081          68 VDPEKFDALLAE   79 (80)
T ss_pred             CCHHHHHHHHHc
Confidence            999999999974

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.46  E-value=1.1e-13  Score=105.73  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             CcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcC--C--CCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEee
Q 022068          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRG--L--KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~g--l--~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~  262 (303)
                      +++|.||.+..    |..+| .+++++|+++|+.++  +  ++.+.+..++|+ |.|+.||+|.++        +.||++
T Consensus         1 ~~~i~vC~~~~----C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gCl-G~C~~~P~v~V~--------~~~y~~   67 (80)
T cd03083           1 KYRIYLSDSIT----DRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCT-GLCDQGPALLIN--------NRVFTR   67 (80)
T ss_pred             CEEEEEcCChH----HHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEecee-cCcCCCCeEEEC--------CEEECC
Confidence            46899999999    99999 999999999997654  4  567999999999 899999999995        799999


Q ss_pred             cCCCCHHHHHHH
Q 022068          263 VTPDDVPAILDQ  274 (303)
Q Consensus       263 Vtp~dv~~Iv~~  274 (303)
                      |+|+++++||+.
T Consensus        68 v~~~~v~~iv~~   79 (80)
T cd03083          68 LTPGRIDQIAEL   79 (80)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999974

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=99.43  E-value=2.6e-13  Score=116.17  Aligned_cols=78  Identities=15%  Similarity=0.370  Sum_probs=70.1

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHH-hcC---CCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID-SRG---LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~-~~g---l~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+.+|+||.++.    |..+| .+|+++|+++|. +.|   .++.+.+..++|+ |.|..||+|.++        +.
T Consensus        70 ~p~gk~~I~VC~g~~----C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~Cl-G~C~~gPvv~V~--------~~  136 (154)
T PRK07539         70 QPVGRHVIQVCTSTP----CWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECL-GACDNAPVVMIN--------DD  136 (154)
T ss_pred             CCCCCEEEEEcCCch----HHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEcccc-CccCCCCEEEEC--------CE
Confidence            356688999999998    99999 999999999998 555   3677999999999 899999999998        68


Q ss_pred             EEeecCCCCHHHHHHH
Q 022068          259 WYGYVTPDDVPAILDQ  274 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~  274 (303)
                      ||++||++++++||++
T Consensus       137 ~y~~vt~e~v~~il~~  152 (154)
T PRK07539        137 TYEDLTPEKIDELLDE  152 (154)
T ss_pred             EeCCCCHHHHHHHHHh
Confidence            9999999999999976

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.42  E-value=3.1e-13  Score=114.59  Aligned_cols=80  Identities=25%  Similarity=0.482  Sum_probs=69.2

Q ss_pred             CCCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHH----hcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCccc
Q 022068          183 QEGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMG  257 (303)
Q Consensus       183 ~e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~----~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g  257 (303)
                      .++..+.+|+||++..    |..+| .+|+++|+++|.    +...++.+.|..++|+ |+|..||+|.|.        +
T Consensus        60 ~~p~gk~~I~VC~g~~----C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~  126 (145)
T PF01257_consen   60 LEPKGKHHIRVCTGTS----CHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCL-GACDQAPVVMVD--------G  126 (145)
T ss_dssp             SSS--SEEEEEE-SHH----HHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSS-SSGGGSSEEEEC--------C
T ss_pred             cCCCCCcEEEeCCCch----HHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCc-cccCCCCEEEEC--------C
Confidence            3456788999999998    99999 999999999995    3456788999999999 899999999996        7


Q ss_pred             EEEeecCCCCHHHHHHHH
Q 022068          258 HWYGYVTPDDVPAILDQH  275 (303)
Q Consensus       258 ~wYg~Vtp~dv~~Iv~~~  275 (303)
                      .||++|||+++.+||++.
T Consensus       127 ~~y~~vt~e~v~~il~~l  144 (145)
T PF01257_consen  127 EWYGNVTPEKVDEILEEL  144 (145)
T ss_dssp             CEEESSSCCHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHhc
Confidence            899999999999999863

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.39  E-value=9.6e-13  Score=104.27  Aligned_cols=87  Identities=24%  Similarity=0.360  Sum_probs=73.4

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEec--CcEEeccCCCCchhH
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFP--EMIKYEGLKESDVDS  166 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~P--d~i~Y~~v~~~dvd~  166 (303)
                      .|||||+....+  .+|...+ ..+.++|++++.+++. ..+++..+.|+|.|..+|+++|||  |++||..++++|+++
T Consensus         2 ~~ilVCth~rrd--~~C~~~g-~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~   77 (97)
T cd03062           2 PLVLVCTHGKRD--KRCGICG-PPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRVTPEHVPP   77 (97)
T ss_pred             CEEEEeCCCCCC--cChhhcC-HHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcCCEEEEEeCCCeeEEeecCHHHHHH
Confidence            599999865433  4666554 5788999999988763 357888899999999999999999  999999999999999


Q ss_pred             HHHHHhhCCCCCC
Q 022068          167 FVDDVLVNGKPWA  179 (303)
Q Consensus       167 ~v~~~L~~g~p~~  179 (303)
                      ||++|+.++.++.
T Consensus        78 Iv~~hl~~g~~v~   90 (97)
T cd03062          78 IVDRLILGGKIIP   90 (97)
T ss_pred             HHHHHhcCCcCCc
Confidence            9999999887763

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=99.38  E-value=1e-12  Score=111.83  Aligned_cols=78  Identities=15%  Similarity=0.395  Sum_probs=69.5

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc----CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~----gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+.+|+||+++.    |..+| .+|+++|+++|...    ..|+.+.+..++|+ |.|..||+|.++        +.
T Consensus        64 ~p~gk~~I~VC~g~~----C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~~  130 (148)
T TIGR01958        64 EPVGRYHLQVCTNVP----CALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECL-GACGNAPVMMIN--------DD  130 (148)
T ss_pred             CCCCCEEEEEcCCch----hhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcc-CccCCCCEEEEC--------CE
Confidence            356678999999998    99999 99999999999854    23667999999999 899999999998        57


Q ss_pred             EEeecCCCCHHHHHHH
Q 022068          259 WYGYVTPDDVPAILDQ  274 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~  274 (303)
                      ||++|||+++++||++
T Consensus       131 ~y~~vt~e~v~~il~~  146 (148)
T TIGR01958       131 YYEFLTPEKLDELLER  146 (148)
T ss_pred             EeCCCCHHHHHHHHHh
Confidence            9999999999999975

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.21  E-value=1.1e-11  Score=89.46  Aligned_cols=51  Identities=22%  Similarity=0.391  Sum_probs=47.6

Q ss_pred             ceeeeeccCCCCCCCCeEEEecCcEEeccCCCCchhHHHHHHhhCCCCCCC
Q 022068          130 VKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWAS  180 (303)
Q Consensus       130 v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dvd~~v~~~L~~g~p~~~  180 (303)
                      ++++.++|++.|..||+++||||++||.+++++|+++||++||++|.+++.
T Consensus         3 i~~t~tgCl~~C~~gPvl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr~Ve~   53 (64)
T COG3411           3 IRVTRTGCLGVCQDGPVLVVYPEGVWYTRVDPEDARRIVQSHLLGGRPVEE   53 (64)
T ss_pred             eEEeecchhhhhccCCEEEEecCCeeEeccCHHHHHHHHHHHHhCCCcchh
Confidence            567889999999999999999999999999999999999999999988743

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=99.17  E-value=3.7e-11  Score=90.13  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=62.1

Q ss_pred             cEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCCCC
Q 022068          189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD  267 (303)
Q Consensus       189 ~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp~d  267 (303)
                      .+|.||.+..    |..+| .+|+++|+++|...    .+.+..++|+ |.|..||+|+++        +..|+++|+++
T Consensus         2 ~~I~vC~~~~----C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~Cl-G~C~~gP~v~V~--------~~~~~~~t~~~   64 (72)
T cd03082           2 LTVRVCDSLS----CAMAGAEELLAALEAGLGPE----GVRVVRAPCV-GRCERAPAALVG--------QRPVDGATPAA   64 (72)
T ss_pred             eEEEEcCChH----HHHCCHHHHHHHHHHHhCCC----eEEEEecCcC-CccCCCCeEEEC--------CEEeCCcCHHH
Confidence            5799999999    99999 99999999998542    5999999999 899999999998        67999999999


Q ss_pred             HHHHHH
Q 022068          268 VPAILD  273 (303)
Q Consensus       268 v~~Iv~  273 (303)
                      ++++++
T Consensus        65 i~~~~~   70 (72)
T cd03082          65 VAAAVE   70 (72)
T ss_pred             HHHHHh
Confidence            999886

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=99.15  E-value=1.2e-10  Score=99.90  Aligned_cols=79  Identities=16%  Similarity=0.285  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHH----hcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~----~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+++|.||++..    |..+| .+|+++|+++|.    +...|+.+.+..+.|+ |.|..||+|.++        +.
T Consensus        71 ~p~Gk~~I~VC~~~~----C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~Cl-G~C~~aP~~~in--------~~  137 (156)
T PRK05988         71 HPPGRHVLKLCRAEA----CQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCL-GLCACSPAAMLD--------GE  137 (156)
T ss_pred             CCCCCEEEEEeCCch----hhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------CE
Confidence            456788999999999    99999 999999999987    3345778999999999 899999999997        78


Q ss_pred             EEeecCCCCHHHHHHHH
Q 022068          259 WYGYVTPDDVPAILDQH  275 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~~  275 (303)
                      .|++||++++++|+++.
T Consensus       138 ~~~~lt~~~~~~il~~~  154 (156)
T PRK05988        138 VHGRLDPQRLDALLAEA  154 (156)
T ss_pred             EeCCCCHHHHHHHHHHh
Confidence            99999999999999864

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=99.14  E-value=1.3e-10  Score=100.86  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHH----hcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~----~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+++|.||.+..    |..+| ..|+++|+++|.    +...|+.+.+..+.|+ |.|..||+|.++        +.
T Consensus        84 ~P~Gk~~I~VC~g~a----C~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~Cl-G~C~~AP~~~Vn--------~~  150 (169)
T PRK07571         84 KPSGEHTCVVCTGTA----CYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCL-GACGIAPAVVFD--------GK  150 (169)
T ss_pred             CCCCCEEEEEcCChH----HHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEeccc-CccCCCCeEEEC--------CE
Confidence            356788999999999    99999 999999999997    3345778999999999 899999999998        78


Q ss_pred             EEeecCCCCHHHHHHHH
Q 022068          259 WYGYVTPDDVPAILDQH  275 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~~  275 (303)
                      .|++||++++++||+++
T Consensus       151 ~~~~lt~e~v~~il~~~  167 (169)
T PRK07571        151 VAGKQTPESVLEKVQGW  167 (169)
T ss_pred             EeCCCCHHHHHHHHHHH
Confidence            99999999999999875

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=99.06  E-value=2.8e-10  Score=97.41  Aligned_cols=79  Identities=18%  Similarity=0.410  Sum_probs=71.6

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHH----hcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~----~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      .+..+++|-||++..    |..+| .+|++.|++.|.    +-.-|+.+.+.++.|+ |.|..+|+|+|+        +.
T Consensus        73 ~P~Gr~~i~VC~~t~----C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~Cl-GaC~~AP~vmin--------d~  139 (160)
T COG1905          73 KPVGRHHIRVCTGTA----CHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECL-GACGQAPVVMIN--------DD  139 (160)
T ss_pred             CcCCCeEEEEeCCcH----HhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeee-cccccCCEEEEC--------Cc
Confidence            466789999999999    99999 999999999998    4445788999999999 899999999998        67


Q ss_pred             EEeecCCCCHHHHHHHH
Q 022068          259 WYGYVTPDDVPAILDQH  275 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~~  275 (303)
                      .|+++|||.+.+||++.
T Consensus       140 ~~~~lt~e~l~eil~~~  156 (160)
T COG1905         140 VYGRLTPEKLEEILEKL  156 (160)
T ss_pred             hhccCCHHHHHHHHHHH
Confidence            89999999999999875

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.02  E-value=6.3e-10  Score=83.54  Aligned_cols=77  Identities=22%  Similarity=0.392  Sum_probs=66.6

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCchhHHH
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV  168 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dvd~~v  168 (303)
                      .||+||+..      .|...++..+.++|+++++..+.+..+++..+.|.|.|..+|.|+|+|++.||.+++++++++|+
T Consensus         1 ~~I~VC~~~------~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v~~~~~~~il   74 (77)
T cd02980           1 HHILVCTGT------ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRVTPEDVEEIV   74 (77)
T ss_pred             CEEEEccCC------CcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccCCHHHHHHHH
Confidence            379999842      45566678899999999988877667888999999999999999999999999999999999999


Q ss_pred             HHH
Q 022068          169 DDV  171 (303)
Q Consensus       169 ~~~  171 (303)
                      ++|
T Consensus        75 ~~~   77 (77)
T cd02980          75 EEL   77 (77)
T ss_pred             HhC
Confidence            864

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=98.91  E-value=2.6e-09  Score=103.37  Aligned_cols=86  Identities=17%  Similarity=0.327  Sum_probs=74.6

Q ss_pred             CCCCC-cEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc----CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCccc
Q 022068          184 EGLTG-SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMG  257 (303)
Q Consensus       184 e~~~~-~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~----gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g  257 (303)
                      ++..+ .+|.||++..    |..+| ..|++.|+++|.-.    .-|+.+.+..+.|| |.|..+|+|.|+        +
T Consensus        85 ~P~Gk~~~I~VC~~t~----C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCL-GaC~~APv~~In--------d  151 (400)
T PRK12373         85 QPVGTRAHIQVCGTTP----CMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECL-GACVNAPMVQIG--------K  151 (400)
T ss_pred             cCCCCceEEEEcCChH----HHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------C
Confidence            35665 7999999999    99999 99999999998743    24677999999999 899999999998        6


Q ss_pred             EEEeecCCCCHHHHHHHHHHCCcccc
Q 022068          258 HWYGYVTPDDVPAILDQHIAKGEIIE  283 (303)
Q Consensus       258 ~wYg~Vtp~dv~~Iv~~~l~~g~~v~  283 (303)
                      .+|++||++++.+||++ +..|+++.
T Consensus       152 ~~y~~LTpe~v~~IL~~-l~ag~~~~  176 (400)
T PRK12373        152 DYYEDLTPERLEEIIDA-FAAGKGPV  176 (400)
T ss_pred             EEeCCCCHHHHHHHHHH-HhCCCCCC
Confidence            89999999999999987 57777653

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=98.81  E-value=8.8e-09  Score=80.79  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             EEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe-cCc-EEeccCCCCchhHH
Q 022068           90 HVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF-PEM-IKYEGLKESDVDSF  167 (303)
Q Consensus        90 HVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~-Pd~-i~Y~~v~~~dvd~~  167 (303)
                      +|+||..  +    .|.+.++..+.++|.+++++++.  .+.+..++|.|.|..+|.|.|+ |++ +.|.+++++|+++|
T Consensus         2 ~I~Vc~g--T----~ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~I   73 (92)
T cd03063           2 RIYVPRD--A----AALALGADEVAEAIEAEAAARGL--AATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASL   73 (92)
T ss_pred             EEEEeCC--h----hhhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHH
Confidence            5788863  2    34567788899999999999886  4778889999999999999997 999 99999999999999


Q ss_pred             HHHHhhCC
Q 022068          168 VDDVLVNG  175 (303)
Q Consensus       168 v~~~L~~g  175 (303)
                      +++|+.+.
T Consensus        74 v~~~~~~~   81 (92)
T cd03063          74 LDAGALEG   81 (92)
T ss_pred             HHHHhhcC
Confidence            99998754

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=98.77  E-value=1e-08  Score=77.97  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             CeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCc
Q 022068           88 GRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESD  163 (303)
Q Consensus        88 ~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~d  163 (303)
                      ++||+||...      .|...++..+.++|.++++.+..    +..+.+..++|+|.|..+|.|+|+  ++||.++++++
T Consensus         1 ~~~v~vC~~~------~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~--g~~y~~vt~~~   72 (80)
T cd03064           1 KHVIRVCTGT------ACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN--DDVYGRLTPEK   72 (80)
T ss_pred             CEEEEECCCc------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEEC--CEEECCCCHHH
Confidence            4689999842      56677788899999988865432    334677889999999999999994  89999999999


Q ss_pred             hhHHHHH
Q 022068          164 VDSFVDD  170 (303)
Q Consensus       164 vd~~v~~  170 (303)
                      +++|+++
T Consensus        73 i~~i~~~   79 (80)
T cd03064          73 VDAILEA   79 (80)
T ss_pred             HHHHHHh
Confidence            9999875

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=98.64  E-value=3.2e-08  Score=86.39  Aligned_cols=86  Identities=17%  Similarity=0.347  Sum_probs=73.0

Q ss_pred             CCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc-C---CCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEE
Q 022068          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR-G---LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (303)
Q Consensus       185 ~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~-g---l~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~w  259 (303)
                      +..++||.||+.+-    |-.+| +.+.++.++.+.-. |   -+....|.++.|+ |.|..||+|.++        +.+
T Consensus       110 p~gKy~v~VC~ttp----C~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eCl-GaCvnaPmi~IN--------D~y  176 (233)
T KOG3196|consen  110 PVGKYHVQVCTTTP----CMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECL-GACVNAPMIAIN--------DDY  176 (233)
T ss_pred             CCCCceEEEecCcH----HhhhccHHHHHHHHHHhCccccccccccceeeecchhh-hhhccCceeeec--------chh
Confidence            46789999999999    99999 89999999887642 2   2456889999999 899999999998        579


Q ss_pred             EeecCCCCHHHHHHHHHHCCccccc
Q 022068          260 YGYVTPDDVPAILDQHIAKGEIIER  284 (303)
Q Consensus       260 Yg~Vtp~dv~~Iv~~~l~~g~~v~~  284 (303)
                      |+.+|++++.+|+++ |.+|+....
T Consensus       177 yedlt~k~l~eIle~-L~~~k~pp~  200 (233)
T KOG3196|consen  177 YEDLTPKKLVEILED-LKAGKKPPA  200 (233)
T ss_pred             hccCCHHHHHHHHHH-HhcCCCCCC
Confidence            999999999999987 677775443

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=98.39  E-value=5.5e-07  Score=68.72  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCch
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r----~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dv  164 (303)
                      ++|.||.+.      .|...++..+.++|.+++...    ..+..+.+..+.|+|.|+.+|.++|  ++.||.+++++++
T Consensus         2 ~~i~vC~~~------~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v--~~~~~~~~~~e~i   73 (80)
T cd03081           2 HVLKLCRAE------ACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMI--DGEVHGRVDPEKF   73 (80)
T ss_pred             eEEEEcCCh------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEE--CCEEECCCCHHHH
Confidence            578899742      455667788889998888633    2334467788999999999999987  9999999999999


Q ss_pred             hHHHHH
Q 022068          165 DSFVDD  170 (303)
Q Consensus       165 d~~v~~  170 (303)
                      ++|+++
T Consensus        74 ~~il~~   79 (80)
T cd03081          74 DALLAE   79 (80)
T ss_pred             HHHHHc
Confidence            999874

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=98.33  E-value=9.1e-07  Score=75.02  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             CCCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHh----ccCCCCceeeeeccCCCCCCCCeEEEecCcEEe
Q 022068           81 AGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT----RKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKY  156 (303)
Q Consensus        81 ~GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~----r~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y  156 (303)
                      .-+.|..++||+||.+.      .|...|+..+.+.|++++.-    ...+..+.+..+.|+|.|+.+|.|+|  ++.||
T Consensus        58 f~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V--~~~~y  129 (145)
T PF01257_consen   58 FRLEPKGKHHIRVCTGT------SCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMV--DGEWY  129 (145)
T ss_dssp             S-SSS--SEEEEEE-SH------HHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEE--CCCEE
T ss_pred             cccCCCCCcEEEeCCCc------hHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEE--CCEEE
Confidence            33556667899999842      55667778888999888842    22344567788999999999999999  88899


Q ss_pred             ccCCCCchhHHHHHH
Q 022068          157 EGLKESDVDSFVDDV  171 (303)
Q Consensus       157 ~~v~~~dvd~~v~~~  171 (303)
                      .+++++++++|++++
T Consensus       130 ~~vt~e~v~~il~~l  144 (145)
T PF01257_consen  130 GNVTPEKVDEILEEL  144 (145)
T ss_dssp             ESSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhc
Confidence            999999999999863

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=98.22  E-value=2.1e-06  Score=65.53  Aligned_cols=74  Identities=18%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCch
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dv  164 (303)
                      ++|.||...      .|...++..+.++|++++..+..    +..+++..++|.|.|..+|.+.|  ++.+|.+++++++
T Consensus         2 ~~i~vC~~~------~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V--~~~~y~~v~~~~v   73 (80)
T cd03083           2 YRIYLSDSI------TDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLI--NNRVFTRLTPGRI   73 (80)
T ss_pred             EEEEEcCCh------HHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEE--CCEEECCCCHHHH
Confidence            578899742      33456778899999999865542    22356677899999999999999  6789999999999


Q ss_pred             hHHHHH
Q 022068          165 DSFVDD  170 (303)
Q Consensus       165 d~~v~~  170 (303)
                      ++|++.
T Consensus        74 ~~iv~~   79 (80)
T cd03083          74 DQIAEL   79 (80)
T ss_pred             HHHHhc
Confidence            999874

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=98.21  E-value=2.2e-06  Score=73.43  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             CCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHH-hccC---CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 022068           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALK-TRKD---DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (303)
Q Consensus        82 GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik-~r~~---~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~  157 (303)
                      .+.|..++||+||.+.      .|...|+..+.++|.+++. +.+.   +..+.+..+.|+|.|+.+|.++|.  +.||.
T Consensus        68 ~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~--~~~y~  139 (154)
T PRK07539         68 FRQPVGRHVIQVCTST------PCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMIN--DDTYE  139 (154)
T ss_pred             CcCCCCCEEEEEcCCc------hHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEEC--CEEeC
Confidence            3456667889999742      4566677889999998886 3332   333566778999999999999997  46999


Q ss_pred             cCCCCchhHHHHH
Q 022068          158 GLKESDVDSFVDD  170 (303)
Q Consensus       158 ~v~~~dvd~~v~~  170 (303)
                      +++++++++|+++
T Consensus       140 ~vt~e~v~~il~~  152 (154)
T PRK07539        140 DLTPEKIDELLDE  152 (154)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999876

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=98.12  E-value=4.3e-06  Score=71.14  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             CCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 022068           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (303)
Q Consensus        82 GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~  157 (303)
                      .+.|..++||+||.+.      .|...|+..+.++|++++.....    +..+.+..+.|.|.|+.+|.++|.+  .||.
T Consensus        62 ~~~p~gk~~I~VC~g~------~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~--~~y~  133 (148)
T TIGR01958        62 DTEPVGRYHLQVCTNV------PCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMIND--DYYE  133 (148)
T ss_pred             CcCCCCCEEEEEcCCc------hhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECC--EEeC
Confidence            3455557889999742      35566778889999988864422    3345677789999999999999984  6999


Q ss_pred             cCCCCchhHHHHH
Q 022068          158 GLKESDVDSFVDD  170 (303)
Q Consensus       158 ~v~~~dvd~~v~~  170 (303)
                      +++++++++++++
T Consensus       134 ~vt~e~v~~il~~  146 (148)
T TIGR01958       134 FLTPEKLDELLER  146 (148)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999875

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=98.00  E-value=3e-05  Score=63.37  Aligned_cols=79  Identities=23%  Similarity=0.395  Sum_probs=63.3

Q ss_pred             EEEcCCCCCCC----ccccc-cHHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEeecCC
Q 022068          191 VFVCSHGSRDK----RCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTP  265 (303)
Q Consensus       191 IlVC~~~~rD~----rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~Vtp  265 (303)
                      |+||+. +|..    .-+.. |..|+++|++.++..++...|+|..+.|| .-|..+-.|.+.-.++   ..+.||.++|
T Consensus         1 l~VC~t-Cr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL-~~C~r~CtVA~~~~gK---~tYlfGdl~p   75 (116)
T PF07845_consen    1 LFVCTT-CRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECL-SACDRPCTVALQAPGK---WTYLFGDLDP   75 (116)
T ss_pred             CEEeCC-CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHH-hcCCCceEEEEEcCCC---cEEEEecCCc
Confidence            588884 3332    33334 48999999999998888888999999999 8999999998874432   4689999999


Q ss_pred             -CCHHHHHHH
Q 022068          266 -DDVPAILDQ  274 (303)
Q Consensus       266 -~dv~~Iv~~  274 (303)
                       ++++.|++.
T Consensus        76 ~~~a~~il~~   85 (116)
T PF07845_consen   76 DEDAEDILAF   85 (116)
T ss_pred             ccCHHHHHHH
Confidence             999999974

The region in question is approximately 130 amino acids long.

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=97.63  E-value=5.3e-05  Score=56.72  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCchhHHH
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV  168 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dvd~~v  168 (303)
                      ++|.||.+.      .|...++..+.++|++++...    .+.+..+.|+|.|+.+|.++|+.+  .|.+++++++++++
T Consensus         2 ~~I~vC~~~------~C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~ClG~C~~gP~v~V~~~--~~~~~t~~~i~~~~   69 (72)
T cd03082           2 LTVRVCDSL------SCAMAGAEELLAALEAGLGPE----GVRVVRAPCVGRCERAPAALVGQR--PVDGATPAAVAAAV   69 (72)
T ss_pred             eEEEEcCCh------HHHHCCHHHHHHHHHHHhCCC----eEEEEecCcCCccCCCCeEEECCE--EeCCcCHHHHHHHH
Confidence            578899743      445567777888888777432    467788999999999999999754  68899999999887


Q ss_pred             H
Q 022068          169 D  169 (303)
Q Consensus       169 ~  169 (303)
                      +
T Consensus        70 ~   70 (72)
T cd03082          70 E   70 (72)
T ss_pred             h
Confidence            6

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=97.43  E-value=0.00065  Score=61.43  Aligned_cols=90  Identities=24%  Similarity=0.370  Sum_probs=64.5

Q ss_pred             CCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe----cCcEEeccCCC
Q 022068           86 PYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF----PEMIKYEGLKE  161 (303)
Q Consensus        86 ~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~----Pd~i~Y~~v~~  161 (303)
                      ..+.+||||+-+.-|-  +|... +..|.++|.+.+..++..... +-.+.-.|.+.=.++|++|    |+++||.+|++
T Consensus       130 ~~~~~iLVCtHg~RD~--rCg~~-Gp~l~~~l~~~~~~~~l~~~~-V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv~p  205 (230)
T PF06999_consen  130 PDKPLILVCTHGKRDK--RCGIL-GPPLARELEKELRERGLSRDR-VWEISHIGGHKFAGNVIIYSKPKPDGIWYGRVTP  205 (230)
T ss_pred             CCCCEEEEcCCCCcCC--chhcc-cHHHHHHHHHHhhhcCCccce-EEEecccccceecCeEEEEecCCCcEEEEEeeCH
Confidence            3577899998543332  55543 356778888888777654322 4334444555557899999    99999999999


Q ss_pred             CchhHHHHHHhhCCCCCC
Q 022068          162 SDVDSFVDDVLVNGKPWA  179 (303)
Q Consensus       162 ~dvd~~v~~~L~~g~p~~  179 (303)
                      ++++.||+..+.+|+.+.
T Consensus       206 ~~v~~iv~~t~~~g~vi~  223 (230)
T PF06999_consen  206 EDVEGIVDATILDGKVIP  223 (230)
T ss_pred             HHHHHHHHHHHhCCcCcC
Confidence            999999999777877653

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=97.38  E-value=0.00088  Score=55.67  Aligned_cols=85  Identities=21%  Similarity=0.431  Sum_probs=65.3

Q ss_pred             CCCCcEEEEcCCCCCCC-----ccccc-cHHHHHHHHHHHHhcCCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          185 GLTGSYVFVCSHGSRDK-----RCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       185 ~~~~~~IlVC~~~~rD~-----rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ...++.+|||.. +||.     +=+-. |..|++.|.+...+..+...+.|..++|+ ..|..|-+|.+.-+++   ..+
T Consensus        14 ~~~~htlfVCks-C~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl-~~C~r~c~vA~~~~~k---~sY   88 (143)
T COG5469          14 GMPKHTLFVCKS-CRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECL-AACNRGCVVAFSGPGK---PSY   88 (143)
T ss_pred             ccCceEEEEecc-ccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhh-hhcCCCeEEEEecCCC---ceE
Confidence            456789999994 4442     22233 37889999877777777777899999999 8999999998864422   268


Q ss_pred             EEeecCCCC-HHHHHHH
Q 022068          259 WYGYVTPDD-VPAILDQ  274 (303)
Q Consensus       259 wYg~Vtp~d-v~~Iv~~  274 (303)
                      .||.++|+| +..||+-
T Consensus        89 LFgdL~p~d~a~dLl~~  105 (143)
T COG5469          89 LFGDLTPDDSASDLLEF  105 (143)
T ss_pred             EEccCCccccHHHHHHH
Confidence            999999999 8888874

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=97.33  E-value=0.00061  Score=58.56  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             CCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhcc----CCCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 022068           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRK----DDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (303)
Q Consensus        82 GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~----~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~  157 (303)
                      .+-|..+++|.||.+.      .|...|+..+.+.|.+++.-..    .+....+..+.|.|.|+.+|.++|  ++..|.
T Consensus        69 ~~~p~Gk~~I~VC~~~------~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~i--n~~~~~  140 (156)
T PRK05988         69 RTHPPGRHVLKLCRAE------ACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAML--DGEVHG  140 (156)
T ss_pred             CCCCCCCEEEEEeCCc------hhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEE--CCEEeC
Confidence            3445667789999742      4455677888888888875322    223345667899999999999988  778899


Q ss_pred             cCCCCchhHHHHHH
Q 022068          158 GLKESDVDSFVDDV  171 (303)
Q Consensus       158 ~v~~~dvd~~v~~~  171 (303)
                      ++++++++++++.+
T Consensus       141 ~lt~~~~~~il~~~  154 (156)
T PRK05988        141 RLDPQRLDALLAEA  154 (156)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999998864

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=97.26  E-value=0.00074  Score=58.79  Aligned_cols=82  Identities=13%  Similarity=0.084  Sum_probs=62.0

Q ss_pred             CCccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 022068           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (303)
Q Consensus        82 GTa~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r----~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~  157 (303)
                      -+.|..+++|.||.+.      .|...|+..+.+.|.+++.-.    ..+....+....|.|.|+.+|.++|  ++..|.
T Consensus        82 ~~~P~Gk~~I~VC~g~------aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~V--n~~~~~  153 (169)
T PRK07571         82 SLKPSGEHTCVVCTGT------ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVF--DGKVAG  153 (169)
T ss_pred             CcCCCCCEEEEEcCCh------HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEE--CCEEeC
Confidence            3445567788899742      445567788888888887522    2233355677899999999999998  677899


Q ss_pred             cCCCCchhHHHHHH
Q 022068          158 GLKESDVDSFVDDV  171 (303)
Q Consensus       158 ~v~~~dvd~~v~~~  171 (303)
                      +++++++++|++++
T Consensus       154 ~lt~e~v~~il~~~  167 (169)
T PRK07571        154 KQTPESVLEKVQGW  167 (169)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999876

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=96.60  E-value=0.0039  Score=53.69  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=58.5

Q ss_pred             cCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCC
Q 022068           85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLK  160 (303)
Q Consensus        85 ~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r----~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~  160 (303)
                      |.-++||-||++.      .|...|++.+.+.|.+.+.-.    ..+....+.-+.|+|.|+.+|.|.|.  +-.|.+++
T Consensus        74 P~Gr~~i~VC~~t------~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmin--d~~~~~lt  145 (160)
T COG1905          74 PVGRHHIRVCTGT------ACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMIN--DDVYGRLT  145 (160)
T ss_pred             cCCCeEEEEeCCc------HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEEC--CchhccCC
Confidence            3346889999742      345567778888888877522    22334455668999999999999884  55678899


Q ss_pred             CCchhHHHHHHh
Q 022068          161 ESDVDSFVDDVL  172 (303)
Q Consensus       161 ~~dvd~~v~~~L  172 (303)
                      ++.+++|++.+.
T Consensus       146 ~e~l~eil~~~~  157 (160)
T COG1905         146 PEKLEEILEKLK  157 (160)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999764

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=96.33  E-value=0.011  Score=57.82  Aligned_cols=81  Identities=20%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCch
Q 022068           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dv  164 (303)
                      .||.||.+.      .|...|+..+.+.|.+.|.-...    +....+....|+|.|..+|.++|  +...|.+++++++
T Consensus        91 ~~I~VC~~t------~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~I--nd~~y~~LTpe~v  162 (400)
T PRK12373         91 AHIQVCGTT------PCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQI--GKDYYEDLTPERL  162 (400)
T ss_pred             eEEEEcCCh------HHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEE--CCEEeCCCCHHHH
Confidence            589999743      34556777888888888754322    22345566889999999999999  5668999999999


Q ss_pred             hHHHHHHhhCCCCC
Q 022068          165 DSFVDDVLVNGKPW  178 (303)
Q Consensus       165 d~~v~~~L~~g~p~  178 (303)
                      ++|++.+ ..|.+.
T Consensus       163 ~~IL~~l-~ag~~~  175 (400)
T PRK12373        163 EEIIDAF-AAGKGP  175 (400)
T ss_pred             HHHHHHH-hCCCCC
Confidence            9999985 455543

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=94.97  E-value=0.069  Score=43.70  Aligned_cols=84  Identities=13%  Similarity=0.052  Sum_probs=54.6

Q ss_pred             EEEEeeCCCCc-ccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEE---eccCCC-Cchh
Q 022068           91 VFLCFKGPEMW-VARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIK---YEGLKE-SDVD  165 (303)
Q Consensus        91 VfLc~~~p~~W-p~~~e~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~---Y~~v~~-~dvd  165 (303)
                      ||||++....| ...-....+..|.+.|.++++.......+++.-..|+..|..+.+|-+-=.++|   |..+++ ++++
T Consensus         1 l~VC~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK~tYlfGdl~p~~~a~   80 (116)
T PF07845_consen    1 LFVCTTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGKWTYLFGDLDPDEDAE   80 (116)
T ss_pred             CEEeCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCCcEEEEecCCcccCHH
Confidence            58998765543 221122233456777777776666555688888999999998877776644444   557777 7777


Q ss_pred             HHHH---HHhhC
Q 022068          166 SFVD---DVLVN  174 (303)
Q Consensus       166 ~~v~---~~L~~  174 (303)
                      +|++   .|...
T Consensus        81 ~il~~a~~Y~~s   92 (116)
T PF07845_consen   81 DILAFAALYAAS   92 (116)
T ss_pred             HHHHHHHHHHhC
Confidence            7765   45544

The region in question is approximately 130 amino acids long.

>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families

Probab=93.37  E-value=0.35  Score=36.83  Aligned_cols=71  Identities=15%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             CcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCCCCcEEEEEeccCC--CCCCCCceeEeCCCCCCCcccEEEeecC
Q 022068          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIG--GHKYAGNLIVYSPDSEGKIMGHWYGYVT  264 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl~~~v~v~~~sclG--G~c~agpvv~v~p~~~~~~~g~wYg~Vt  264 (303)
                      ++.|-+|.+.-      ..| ..+++.|++       +.++.|.+.||+|  |.|...|-.+|+        |.+-.--|
T Consensus         2 ~piVefC~~Nl------~~g~~~~~~~Le~-------~p~~~Vie~gCl~~Cg~C~~~pFAlVn--------G~~V~A~t   60 (78)
T PF07293_consen    2 NPIVEFCVSNL------ASGTDQVYEKLEK-------DPDIDVIEYGCLSYCGPCAKKPFALVN--------GEIVAAET   60 (78)
T ss_pred             CceEEEcccCc------hhhhHHHHHHHhc-------CCCccEEEcChhhhCcCCCCCccEEEC--------CEEEecCC
Confidence            35688899764      567 777877764       1347899999993  445678888887        66666666


Q ss_pred             CCCHHHHHHHHHHCC
Q 022068          265 PDDVPAILDQHIAKG  279 (303)
Q Consensus       265 p~dv~~Iv~~~l~~g  279 (303)
                      ++++-+-|.++|.+.
T Consensus        61 ~eeL~~kI~~~i~e~   75 (78)
T PF07293_consen   61 AEELLEKIKEKIEEN   75 (78)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            666655555665443

Members contain four highly conserved cysteine residues and their function is unknown.

>PRK13669 hypothetical protein; Provisional

Probab=91.31  E-value=0.68  Score=35.21  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=45.5

Q ss_pred             CcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCCCCcEEEEEeccCC--CCCCCCceeEeCCCCCCCcccEEEeecC
Q 022068          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIG--GHKYAGNLIVYSPDSEGKIMGHWYGYVT  264 (303)
Q Consensus       188 ~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl~~~v~v~~~sclG--G~c~agpvv~v~p~~~~~~~g~wYg~Vt  264 (303)
                      ++.|=+|.+..      ..| +.+++.|++       ++++.|.+.||++  |.|..+|-.+|.        |.+-..-|
T Consensus         2 ~piVEfC~sNl------~~G~~~~~~~Le~-------dP~~dVie~gCls~CG~C~~~~FAlVn--------g~~V~a~t   60 (78)
T PRK13669          2 NPIVEFCVSNL------ASGSQAAFEKLEK-------DPNLDVLEYGCLGYCGICSEGLFALVN--------GEVVEGET   60 (78)
T ss_pred             Cceeeehhcch------hhhHHHHHHHHHh-------CCCceEEEcchhhhCcCcccCceEEEC--------CeEeecCC
Confidence            35678899874      667 666665632       3457899999983  456788989997        55555555


Q ss_pred             CCCHHHHHHHHHHC
Q 022068          265 PDDVPAILDQHIAK  278 (303)
Q Consensus       265 p~dv~~Iv~~~l~~  278 (303)
                      +|+.-+-|.++|..
T Consensus        61 ~eeL~~kI~~~i~e   74 (78)
T PRK13669         61 PEELVENIYAHLEE   74 (78)
T ss_pred             HHHHHHHHHHHHhh
Confidence            55554444455544

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=83.11  E-value=2.4  Score=37.78  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             ccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCC----CceeeeeccCCCCCCCCeEEEecCcEEeccC
Q 022068           84 VNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDM----TVKSLMTVCGGGEGTDGDVLIFPEMIKYEGL  159 (303)
Q Consensus        84 a~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~~~----~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v  159 (303)
                      .+.-+-||-||++    ||  |...+++...+...+.+.....+.    .-.+.-..|+|.|-.+|.+-|- | -.|..+
T Consensus       109 ~p~gKy~v~VC~t----tp--C~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~IN-D-~yyedl  180 (233)
T KOG3196|consen  109 KPVGKYHVQVCTT----TP--CMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAIN-D-DYYEDL  180 (233)
T ss_pred             cCCCCceEEEecC----cH--HhhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeeec-c-hhhccC
Confidence            3444678999974    32  222334444444444442211111    1234557899999999988774 3 368889


Q ss_pred             CCCchhHHHHHHhhCCC
Q 022068          160 KESDVDSFVDDVLVNGK  176 (303)
Q Consensus       160 ~~~dvd~~v~~~L~~g~  176 (303)
                      ++.++.+|+++ |.+++
T Consensus       181 t~k~l~eIle~-L~~~k  196 (233)
T KOG3196|consen  181 TPKKLVEILED-LKAGK  196 (233)
T ss_pred             CHHHHHHHHHH-HhcCC
Confidence            99999999987 55443

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=80.52  E-value=6.5  Score=33.01  Aligned_cols=86  Identities=14%  Similarity=0.120  Sum_probs=48.3

Q ss_pred             eEEEEEeeCCCCcccccc--cccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe-cCcEE--eccCCCCc
Q 022068           89 RHVFLCFKGPEMWVARVE--ASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF-PEMIK--YEGLKESD  163 (303)
Q Consensus        89 rHVfLc~~~p~~Wp~~~e--~~~s~~L~~~L~~~Ik~r~~~~~v~~~~t~c~g~c~~gp~vlV~-Pd~i~--Y~~v~~~d  163 (303)
                      +-+|||......|...-+  ..+...|.+.|.++-..........++-..|+..|..+.+|.+- |+..-  |..++++|
T Consensus        18 htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~p~d   97 (143)
T COG5469          18 HTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLTPDD   97 (143)
T ss_pred             eEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCCccc
Confidence            448999876777754222  22233455555544444443344567778899999976544333 55432  44666665


Q ss_pred             -hhHHH---HHHhhC
Q 022068          164 -VDSFV---DDVLVN  174 (303)
Q Consensus       164 -vd~~v---~~~L~~  174 (303)
                       ..+++   +.|..+
T Consensus        98 ~a~dLl~~a~ly~~~  112 (143)
T COG5469          98 SASDLLEFAQLYANS  112 (143)
T ss_pred             cHHHHHHHHHHhhhc
Confidence             44544   445543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
1m2b_A	110	Crystal Structure At 1.25 Angstroms Resolution Of T		8e-04

>pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The Cys55ser Variant Of The Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 190 YVFVCSH----GSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA---G 242
           +VFVC      G     C   G    E F A ++      Q+F+       G   A   G
Sbjct: 5   HVFVCVQDRPPGHPQGSCAQRGSR--EVFQAFMEKIQTDPQLFMTTVITPTGSMNACMMG 62
Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
            ++V  PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  PVVVVYPD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	3e-21
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 85.6 bits (212), Expect = 3e-21
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 191 VFVCSH----GSRDKRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNL 244
           VFVC      G     C   G   + + F  +I +   L     + P   +        +
Sbjct: 6   VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVV 65

Query: 245 IVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           +VY PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 66  VVY-PD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 89  RHVFLC--FKGPEMWVARVEASDTDTLPKLLASALKTRKD-DMTVKSLMTVCGGGEGTDG 145
           +HVF+C   + P           +  + +     ++T     MT     T C        
Sbjct: 4   KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGP 63

Query: 146 DVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
            V+++P+ + Y  +K  DVD  V+  L  G+P
Sbjct: 64  VVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEP 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 45/331 (13%), Positives = 91/331 (27%), Gaps = 95/331 (28%)

Query: 31  LLILSHALHPTRTRT-----RILITRTDTNNMSTISAE-------DDAKYGFTREE---- 74
           LL+L +  +           +IL+T         +SA        D      T +E    
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 75  ------MYKEKL---AGTVNPYGRHVF--LCFKGPEMWVARVEASDTDTLPKLLASALKT 123
                    + L     T NP    +       G   W    +  + D L  ++ S+L  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNV 365

Query: 124 RKDDMTVKSLMTVCGGGEGTDGDVLIFPE---------MIKYEGLKESDVDSFVDDV--- 171
            +     + +               +FP           + +  + +SDV   V+ +   
Sbjct: 366 LEPA-EYRKMFDRLS----------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 172 -LVNGKPWASGVQEGLTGSYVFVCSHGSRD----KRCGVCGPALIEKFNAEIDSRGLKDQ 226
            LV            +   Y+ +      +    +        +++ +N     +     
Sbjct: 415 SLVEK--QPKESTISIPSIYLELKVKLENEYALHRS-------IVDHYNIP---KTFDSD 462

Query: 227 IFVKP------CSHIGGH--------KYAGNLIVYSPDS--EGKIMGHWYGYVTPDDVPA 270
             + P       SHIG H        +     +V+      E KI      +     +  
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 271 ILDQ------HIAKGE-----IIERLWRFVL 290
            L Q      +I   +     ++  +  F+ 
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.79
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.6
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	99.52
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.38
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	98.81
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	98.38

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.79  E-value=1.3e-19  Score=145.43  Aligned_cols=95  Identities=31%  Similarity=0.559  Sum_probs=87.1

Q ss_pred             CcEEEEcCCCCCC----Ccccccc-HHHHHHHHHHHHhc-CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEe
Q 022068          188 GSYVFVCSHGSRD----KRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYG  261 (303)
Q Consensus       188 ~~~IlVC~~~~rD----~rC~~~G-~~l~~~l~~~l~~~-gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg  261 (303)
                      +++|+||++.++|    .+|..+| .+|+++|++++..+ |+.+.+.|..++|+ |.|..||+|+|+|+      ++||+
T Consensus         3 ~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P~------~~~y~   75 (110)
T 1m2d_A            3 FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWYG   75 (110)
T ss_dssp             CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEEC
T ss_pred             ceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEeC------CEEEe
Confidence            5799999997776    3799998 99999999999998 87777999999999 89999999999876      79999


Q ss_pred             ecCCCCHHHHHHHHHHCCccccceeeec
Q 022068          262 YVTPDDVPAILDQHIAKGEIIERLWRFV  289 (303)
Q Consensus       262 ~Vtp~dv~~Iv~~~l~~g~~v~~l~rG~  289 (303)
                      +|||++|++||++|+.+|+++++|+...
T Consensus        76 ~vt~e~v~~il~~~l~~g~~v~~l~~~~  103 (110)
T 1m2d_A           76 QVKPEDVDEIVEKHLKGGEPVERLVISK  103 (110)
T ss_dssp             SCCGGGHHHHHHHTTTTSCCCGGGEEEC
T ss_pred             cCCHHHHHHHHHHHHHCCcChHHhcccC
Confidence            9999999999999999999999988765

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.60  E-value=1.1e-16  Score=122.39  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=71.1

Q ss_pred             CCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCC----CCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEE
Q 022068          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (303)
Q Consensus       185 ~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl----~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~w  259 (303)
                      +..+.+|+||+++.    |..+| .+|+++|+++|..+++    ++.+.|..++|+ |.|..||+|.++        +.|
T Consensus         3 p~g~~~I~VC~g~~----C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~Cl-G~C~~~P~v~V~--------~~~   69 (85)
T 2auv_A            3 PKGKYPISVCMGTA----CFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCV-GGCALAPIVMVG--------EKV   69 (85)
T ss_dssp             SCCSBCEECCCCHH----HHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSS-SSCTTSCCCEEG--------GGC
T ss_pred             CCCCEEEEECCCch----HHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCcc-CcCCCCCEEEEC--------CEE
Confidence            45678999999998    99999 9999999999998877    667999999999 899999999997        799


Q ss_pred             EeecCCCCHHHHHHHH
Q 022068          260 YGYVTPDDVPAILDQH  275 (303)
Q Consensus       260 Yg~Vtp~dv~~Iv~~~  275 (303)
                      |++|||+++++||++|
T Consensus        70 y~~vt~e~v~~il~~~   85 (85)
T 2auv_A           70 YGNVTPGQVKKILAEY   85 (85)
T ss_dssp             CCCSSSSHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHhC
Confidence            9999999999999864

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=99.52  E-value=5.5e-15  Score=128.41  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc----CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~----gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+.+|+||+++.    |..+| .+|+++|+++|...    ..++.+++..++|+ |.|..||+|.+.        +.
T Consensus        73 ~P~gk~~I~VC~gt~----C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~Cl-G~C~~gPvv~V~--------~~  139 (181)
T 3i9v_2           73 VPTGKYHLQVCATLS----CKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN--------DE  139 (181)
T ss_dssp             SCCCSEEEEEECSHH----HHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCC-SCGGGCSCEECS--------SS
T ss_pred             CCCCCEEEEECCCch----hhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCC-CccCCCCEEEEC--------CE
Confidence            456789999999998    99999 99999999999753    25678999999999 899999999996        56


Q ss_pred             -EEeecCCCCHHHHHHHHHHCCccccceee
Q 022068          259 -WYGYVTPDDVPAILDQHIAKGEIIERLWR  287 (303)
Q Consensus       259 -wYg~Vtp~dv~~Iv~~~l~~g~~v~~l~r  287 (303)
                       ||++|||++|++||++ +.+|++++++..
T Consensus       140 ~~y~~vt~e~v~~Il~~-l~~g~~ve~l~~  168 (181)
T 3i9v_2          140 PYVECVTRARLEALLAG-LRAGKRLEEIEL  168 (181)
T ss_dssp             CCBCCCCHHHHHHHHHH-HHTTCCGGGCCC
T ss_pred             EEEcCCCHHHHHHHHHH-HHcCCChhheec
Confidence             9999999999999998 799999998753

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.38  E-value=5.1e-13  Score=106.78  Aligned_cols=93  Identities=22%  Similarity=0.300  Sum_probs=77.3

Q ss_pred             CCCeEEEEEeeCCCC-ccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCC
Q 022068           86 PYGRHVFLCFKGPEM-WVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES  162 (303)
Q Consensus        86 ~y~rHVfLc~~~p~~-Wp~-~~e~~~s~~L~~~L~~~Ik~r-~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~  162 (303)
                      +|++||+||++...+ +|+ .|...++..+.++|+++++.+ +....+++..+.|+|.|..+|.|+|||+++||.+++++
T Consensus         1 ~~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e   80 (110)
T 1m2d_A            1 AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPE   80 (110)
T ss_dssp             --CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGG
T ss_pred             CCceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHH
Confidence            368899999865333 443 677777888999999999877 54445778889999999999999999999999999999


Q ss_pred             chhHHHHHHhhCCCCC
Q 022068          163 DVDSFVDDVLVNGKPW  178 (303)
Q Consensus       163 dvd~~v~~~L~~g~p~  178 (303)
                      ++++|+++|+.+|.++
T Consensus        81 ~v~~il~~~l~~g~~v   96 (110)
T 1m2d_A           81 DVDEIVEKHLKGGEPV   96 (110)
T ss_dssp             GHHHHHHHTTTTSCCC
T ss_pred             HHHHHHHHHHHCCcCh
Confidence            9999999999988775

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=98.81  E-value=1e-09  Score=83.35  Aligned_cols=80  Identities=15%  Similarity=0.141  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccC
Q 022068           84 VNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGL  159 (303)
Q Consensus        84 a~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v  159 (303)
                      .|.+++||+||...      .|...++..+.++|+++++.++.    +..+.+..+.|+|.|..+|.|+|+  ++||.++
T Consensus         2 ~p~g~~~I~VC~g~------~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~--~~~y~~v   73 (85)
T 2auv_A            2 VPKGKYPISVCMGT------ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG--EKVYGNV   73 (85)
T ss_dssp             CSCCSBCEECCCCH------HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEG--GGCCCCS
T ss_pred             CCCCCEEEEECCCc------hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEEC--CEEECCC
Confidence            35668899999842      45566777889999998877655    335677889999999999999997  7899999


Q ss_pred             CCCchhHHHHHH
Q 022068          160 KESDVDSFVDDV  171 (303)
Q Consensus       160 ~~~dvd~~v~~~  171 (303)
                      +++++++|+++|
T Consensus        74 t~e~v~~il~~~   85 (85)
T 2auv_A           74 TPGQVKKILAEY   85 (85)
T ss_dssp             SSSHHHHHHHHC
T ss_pred             CHHHHHHHHHhC
Confidence            999999999864

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=98.38  E-value=2e-07  Score=80.73  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             CccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhcc----CCCCceeeeeccCCCCCCCCeEEEecCcE-Eec
Q 022068           83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRK----DDMTVKSLMTVCGGGEGTDGDVLIFPEMI-KYE  157 (303)
Q Consensus        83 Ta~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~----~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i-~Y~  157 (303)
                      +.|..++||+||.+.      .|...|+..+.++|++++....    .+..+++..+.|+|.|+.+|.|.|  ++. ||.
T Consensus        72 ~~P~gk~~I~VC~gt------~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V--~~~~~y~  143 (181)
T 3i9v_2           72 FVPTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVE  143 (181)
T ss_dssp             SSCCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEEC--SSSCCBC
T ss_pred             CCCCCCEEEEECCCc------hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEE--CCEEEEc
Confidence            344556899999742      4566778889999999886542    233466778999999999999999  667 999


Q ss_pred             cCCCCchhHHHHHHhhCCCCC
Q 022068          158 GLKESDVDSFVDDVLVNGKPW  178 (303)
Q Consensus       158 ~v~~~dvd~~v~~~L~~g~p~  178 (303)
                      +++++++++|+++ +.+|.++
T Consensus       144 ~vt~e~v~~Il~~-l~~g~~v  163 (181)
T 3i9v_2          144 CVTRARLEALLAG-LRAGKRL  163 (181)
T ss_dssp             CCCHHHHHHHHHH-HHTTCCG
T ss_pred             CCCHHHHHHHHHH-HHcCCCh
Confidence            9999999999998 7788775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	1e-16
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	4e-05

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 71.6 bits (175), Expect = 1e-16
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 190 YVFVCSH----GSRDKRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGN 243
           +VFVC      G     C   G   + + F  +I +   L     + P   +        
Sbjct: 3   HVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPV 62

Query: 244 LIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           ++VY PD        WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  VVVY-PDG------VWYGQVKPEDVDEIVEKHLKGGEPVERL 97

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 89  RHVFLC----FKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTD 144
           +HVF+C      G          S  +     +       +  MT     T C       
Sbjct: 2   KHVFVCVQDRPPGHPQGSCAQRGSR-EVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMG 60

Query: 145 GDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
             V+++P+ + Y  +K  DVD  V+  L  G+P
Sbjct: 61  PVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEP 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.87
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.57
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	98.91
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	95.42

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.87  E-value=7.5e-23  Score=160.20  Aligned_cols=93  Identities=31%  Similarity=0.601  Sum_probs=84.5

Q ss_pred             cEEEEcCCCC----CCCcccccc-HHHHHHHHHHHHhc-CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEee
Q 022068          189 SYVFVCSHGS----RDKRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (303)
Q Consensus       189 ~~IlVC~~~~----rD~rC~~~G-~~l~~~l~~~l~~~-gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg~  262 (303)
                      +|||||++.+    ++.+|+.+| .+++++|+++++.. ++++.+.|..+||+ |.|..||+|+++|+      ++||++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgCl-G~C~~gP~v~i~P~------~~~Y~~   74 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWYGQ   74 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEECS
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCC-cccCCCceEEEcCC------ccEEec
Confidence            5899999965    456899998 99999999999854 67778999999999 89999999999997      899999


Q ss_pred             cCCCCHHHHHHHHHHCCccccceeee
Q 022068          263 VTPDDVPAILDQHIAKGEIIERLWRF  288 (303)
Q Consensus       263 Vtp~dv~~Iv~~~l~~g~~v~~l~rG  288 (303)
                      ||++++++||++||.+|+++++|+..
T Consensus        75 v~~e~v~~Iv~~hl~~g~~ve~ll~~  100 (101)
T d1m2da_          75 VKPEDVDEIVEKHLKGGEPVERLVIS  100 (101)
T ss_dssp             CCGGGHHHHHHHTTTTSCCCGGGEEE
T ss_pred             CCHHHHHHHHHHHHHCCcCchHhccc
Confidence            99999999999999999999999864

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.57  E-value=1e-15  Score=118.99  Aligned_cols=91  Identities=22%  Similarity=0.331  Sum_probs=75.9

Q ss_pred             eEEEEEeeCCC-Cccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCCchh
Q 022068           89 RHVFLCFKGPE-MWVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVD  165 (303)
Q Consensus        89 rHVfLc~~~p~-~Wp~-~~e~~~s~~L~~~L~~~Ik~r-~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~dvd  165 (303)
                      ||||||++.+. +-++ +|...++..+.++|+++++.. +.+..+++..++|+|.|..+|.++|||+++||..+++++++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~P~~~~Y~~v~~e~v~   81 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPEDVD   81 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGGHH
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEcCCccEEecCCHHHHH
Confidence            79999986532 2232 667777788899999888754 34456888999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCC
Q 022068          166 SFVDDVLVNGKPWA  179 (303)
Q Consensus       166 ~~v~~~L~~g~p~~  179 (303)
                      +|+++||.+|.++.
T Consensus        82 ~Iv~~hl~~g~~ve   95 (101)
T d1m2da_          82 EIVEKHLKGGEPVE   95 (101)
T ss_dssp             HHHHHTTTTSCCCG
T ss_pred             HHHHHHHHCCcCch
Confidence            99999999998763

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=5.9e-10  Score=94.30  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc-C---CCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR-G---LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (303)
Q Consensus       184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~-g---l~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~  258 (303)
                      ++..+.+|.||++..    |..+| ..|+++++++|.-. |   .|+.+.|..+.|+ |+|..+|+|.|.       +..
T Consensus        71 ~p~gk~~i~VC~~~~----C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~Cl-G~C~~APa~~In-------~~~  138 (178)
T d2fug21          71 VPTGKYHLQVCATLS----CKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN-------DEP  138 (178)
T ss_dssp             SCCCSEEEEEECSHH----HHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCC-SCTTSSSCEECS-------SSS
T ss_pred             cccccceeEecCchh----hhhccchhhHHHHHhhcccccccccCCCCEEEEEeecc-CccCCCCeEEEc-------CEE
Confidence            456688999999998    99999 99999999999744 2   3667999999999 899999999997       234


Q ss_pred             EEeecCCCCHHHHHHHHHHCCccccce-eeeccC
Q 022068          259 WYGYVTPDDVPAILDQHIAKGEIIERL-WRFVLY  291 (303)
Q Consensus       259 wYg~Vtp~dv~~Iv~~~l~~g~~v~~l-~rG~~~  291 (303)
                      ++++||++++++||++ +..|+.+++. ..|+.|
T Consensus       139 y~~~lt~e~~~~il~~-lr~~~~~~~~~~~~~~~  171 (178)
T d2fug21         139 YVECVTRARLEALLAG-LRAGKRLEEIELPGKCG  171 (178)
T ss_dssp             BCCSCCHHHHHHHHHH-HHTTCCGGGCCCSSCCC
T ss_pred             ecCCCCHHHHHHHHHH-HHcCCCCCCCCCCCCCC
Confidence            5689999999999987 6777765552 444443

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0066  Score=49.98  Aligned_cols=85  Identities=18%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             CccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEe-c
Q 022068           83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKY-E  157 (303)
Q Consensus        83 Ta~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y-~  157 (303)
                      +.|.-+.+|.||...      .|...++..+.+.+++++.-...    +....+....|+|.|..+|.+.|  ++..| .
T Consensus        70 ~~p~gk~~i~VC~~~------~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~I--n~~~y~~  141 (178)
T d2fug21          70 FVPTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVE  141 (178)
T ss_dssp             SSCCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEEC--SSSSBCC
T ss_pred             ccccccceeEecCch------hhhhccchhhHHHHHhhcccccccccCCCCEEEEEeeccCccCCCCeEEE--cCEEecC
Confidence            334446778888632      45556677788888887754322    22345666899999999998877  55455 5


Q ss_pred             cCCCCchhHHHHHHhhCCC
Q 022068          158 GLKESDVDSFVDDVLVNGK  176 (303)
Q Consensus       158 ~v~~~dvd~~v~~~L~~g~  176 (303)
                      +++++.+++|++. |..|+
T Consensus       142 ~lt~e~~~~il~~-lr~~~  159 (178)
T d2fug21         142 CVTRARLEALLAG-LRAGK  159 (178)
T ss_dssp             SCCHHHHHHHHHH-HHTTC
T ss_pred             CCCHHHHHHHHHH-HHcCC
Confidence            7999999999997 44443