Citrus Sinensis ID: 022160

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV
cccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccEEEEEccccccHHHEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEcccccccccccEcccccccccccEEEEEcccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccHHHHHHHHHHccccccHHHHHccc
mdkllsdsgdsthSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKywqqpgdvegygqafvmseetkldwsdmflmstlptylrkphlfpklplplrdTLEAHSKEMNNLAQKVLNQMAKTlrmdpndmKELFEGGMqsmrmnycppcpqpelviglnshsdAAGLSILLQINevdglqikkdgmwvpikplpdafiINIGDVLEIITNGIYrsiehrgtvntkkerlsiatfhtpkiegdlgpapslltpetpALFRRIGVAEYLKgyfgrelrgksyvDAIRV
mdkllsdsgdsTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYrsiehrgtvntkkerlSIATFhtpkiegdlgpapSLLTPETPALFRRIGVAEYLkgyfgrelrgksyvdairv
MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYlrkphlfpklplplrDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV
*****************NLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPL*********************************************MNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYV*****
*D*************LENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV
*************SELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV
****LSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVD*IRV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTxxxxxxxxxxxxxxxxxxxxxTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.976 0.821 0.587 1e-108
D4N502360 Codeine O-demethylase OS= N/A no 0.953 0.797 0.583 1e-101
D4N501364 Probable 2-oxoglutarate/F N/A no 1.0 0.826 0.547 1e-100
D4N500364 Thebaine 6-O-demethylase N/A no 0.953 0.788 0.563 1e-100
A2A1A0352 S-norcoclaurine synthase N/A no 0.936 0.801 0.455 1e-67
Q96323356 Leucoanthocyanidin dioxyg no no 0.936 0.792 0.369 4e-48
P51091357 Leucoanthocyanidin dioxyg N/A no 0.900 0.759 0.360 7e-47
Q00985314 1-aminocyclopropane-1-car N/A no 0.926 0.888 0.333 3e-45
Q07512348 Flavonol synthase/flavano N/A no 0.863 0.747 0.364 4e-45
O48882330 1-aminocyclopropane-1-car N/A no 0.926 0.845 0.333 1e-44
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 235/296 (79%), Gaps = 2/296 (0%)

Query: 8   SGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPG 67
           S  +  SE+E L  AC++WGFFQL+NHG+ SS ++K+K EI +FF LPMEEKKK+WQ+P 
Sbjct: 63  SSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPD 122

Query: 68  DVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLA 127
           ++EG+GQAFV+SE+ KLDW+D+F  +  P  LRKPHLFPKLPLP RDTLE +S E+ ++A
Sbjct: 123 EIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVA 182

Query: 128 QKVLNQMAKTLRMDPNDMKELFEG--GMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSIL 185
           + ++ +MA+ L + P ++++LF+    +QSMRMNY PPCPQP+ VIGL  HSD+ GL++L
Sbjct: 183 KILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVL 242

Query: 186 LQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLS 245
           +Q+N+V+GLQIKKDG WVP+KPLP+AFI+NIGDVLEIITNG YRSIEHRG VN++KERLS
Sbjct: 243 MQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLS 302

Query: 246 IATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV 301
           IATFH   +  ++GPA SL+  +  A F+R+ + EY  G F R L GK+Y+DA+R+
Sbjct: 303 IATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q00985|ACCO1_MALDO 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|O48882|ACCO2_MALDO 1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
297734657316 unnamed protein product [Vitis vinifera] 0.976 0.930 0.687 1e-124
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.976 0.807 0.687 1e-124
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 0.976 0.803 0.687 1e-124
297734658367 unnamed protein product [Vitis vinifera] 0.990 0.811 0.658 1e-119
225453295348 PREDICTED: protein SRG1 [Vitis vinifera] 0.990 0.856 0.658 1e-119
255557461360 Flavonol synthase/flavanone 3-hydroxylas 0.993 0.830 0.667 1e-119
255575141364 Leucoanthocyanidin dioxygenase, putative 0.970 0.802 0.658 1e-118
147776748395 hypothetical protein VITISV_032872 [Viti 0.976 0.744 0.612 1e-116
449434270358 PREDICTED: protein SRG1-like [Cucumis sa 0.993 0.835 0.637 1e-116
224061027362 predicted protein [Populus trichocarpa] 0.993 0.825 0.641 1e-116
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 252/294 (85%)

Query: 8   SGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPG 67
           S D THSELE LH AC++WGFFQLINHGVSSSL+EK+K E  EFF LP+EEKKK+WQ+PG
Sbjct: 14  SADFTHSELEKLHRACQEWGFFQLINHGVSSSLVEKVKAETQEFFNLPLEEKKKFWQKPG 73

Query: 68  DVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLA 127
           +VEG+GQAFV+SEE KLDW D+F MSTLPT+ RKPHLFPKLPLP RDTLE +  EM NLA
Sbjct: 74  EVEGFGQAFVVSEEQKLDWGDIFFMSTLPTHFRKPHLFPKLPLPFRDTLEVYVVEMRNLA 133

Query: 128 QKVLNQMAKTLRMDPNDMKELFEGGMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQ 187
             +L+ M K L+++ N+M++LFE G+Q+MRMNY PPCP+PE VIGL  HSD+ GL+ILLQ
Sbjct: 134 LTMLSFMEKALKIEVNEMRKLFEQGLQAMRMNYYPPCPKPEQVIGLTPHSDSVGLTILLQ 193

Query: 188 INEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLSIA 247
           +NEV+GLQI+KDGMW+PI PLP+AFI+NIGD+LEI +NGIY+SIEHR  VN+ KERLSIA
Sbjct: 194 VNEVEGLQIRKDGMWIPITPLPNAFIVNIGDILEIFSNGIYKSIEHRAVVNSVKERLSIA 253

Query: 248 TFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV 301
           TF+ P+++ ++GP PSL+TPE PALFRR+GVA+Y+K  F REL GKSY++A+R+
Sbjct: 254 TFYNPQMDAEIGPVPSLITPEFPALFRRVGVADYVKKLFSRELGGKSYLEALRI 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734658|emb|CBI16709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453295|ref|XP_002269432.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557461|ref|XP_002519761.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541178|gb|EEF42734.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.976 0.821 0.540 3.2e-88
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.993 0.828 0.533 8e-85
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.990 0.844 0.509 5.6e-84
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 1.0 0.845 0.493 5.2e-81
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.993 0.839 0.495 1.8e-80
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 1.0 0.826 0.415 1.7e-66
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.943 0.804 0.390 5.9e-57
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.990 0.803 0.34 4e-51
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.970 0.839 0.334 7.4e-50
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.996 0.826 0.345 2.5e-49
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 160/296 (54%), Positives = 221/296 (74%)

Query:     8 SGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPG 67
             S  +  SE+E L  AC++WGFFQL+NHG+ SS ++K+K EI +FF LPMEEKKK+WQ+P 
Sbjct:    63 SSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPD 122

Query:    68 DVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEMNNLA 127
             ++EG+GQAFV+SE+ KLDW+D+F  +  P                 DTLE +S E+ ++A
Sbjct:   123 EIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVA 182

Query:   128 QKVLNQMAKTLRMDPNDMKELFEG--GMQSMRMNYCPPCPQPELVIGLNSHSDAAGLSIL 185
             + ++ +MA+ L + P ++++LF+    +QSMRMNY PPCPQP+ VIGL  HSD+ GL++L
Sbjct:   183 KILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVL 242

Query:   186 LQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTKKERLS 245
             +Q+N+V+GLQIKKDG WVP+KPLP+AFI+NIGDVLEIITNG YRSIEHRG VN++KERLS
Sbjct:   243 MQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLS 302

Query:   246 IATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV 301
             IATFH   +  ++GPA SL+  +  A F+R+ + EY  G F R L GK+Y+DA+R+
Sbjct:   303 IATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D4N501DIOX2_PAPSO1, ., 1, 4, ., 1, 1, ., -0.54751.00.8269N/Ano
Q39224SRG1_ARATHNo assigned EC number0.58780.97670.8212yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.7LOW CONFIDENCE prediction!
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-152
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-109
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-95
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-76
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-73
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 7e-69
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-62
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-61
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 7e-60
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-59
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-59
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-55
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-55
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-53
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-51
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-50
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-48
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-46
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 6e-40
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-38
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-37
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-32
PLN02485329 PLN02485, PLN02485, oxidoreductase 7e-32
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-31
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-31
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-29
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-18
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-08
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  428 bits (1102), Expect = e-152
 Identities = 177/302 (58%), Positives = 236/302 (78%), Gaps = 3/302 (0%)

Query: 1   MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKK 60
           M +L S +  +  SE+E L  AC++WGFFQL+NHG+ SS ++K+K EI +FF LPMEEKK
Sbjct: 58  MKRLCSST--AMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKK 115

Query: 61  KYWQQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHS 120
           K WQ+PG++EG+GQAFV+SE+ KLDW+DMF ++  P  LRKPHLFPKLPLP RDTLE +S
Sbjct: 116 KLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYS 175

Query: 121 KEMNNLAQKVLNQMAKTLRMDPNDMKELFEGGM-QSMRMNYCPPCPQPELVIGLNSHSDA 179
            E+ ++A+ +  +MA  L + P +M++LF+  + QS+RMNY PPCPQP+ VIGL  HSDA
Sbjct: 176 AEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDA 235

Query: 180 AGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNT 239
            GL+ILLQ+NEV+GLQIKKDG WV +KPLP+A ++N+GD+LEIITNG YRSIEHRG VN+
Sbjct: 236 VGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNS 295

Query: 240 KKERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAI 299
           +KERLS+ATFH   +  ++GPA SL+  +  ALF+ +   EY  G F REL GK+Y+DA+
Sbjct: 296 EKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAM 355

Query: 300 RV 301
           R+
Sbjct: 356 RI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947374 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.84
PLN03176120 flavanone-3-hydroxylase; Provisional 99.65
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.02
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.01
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.98
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.95
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 94.4
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.13
TIGR02466201 conserved hypothetical protein. This family consis 89.12
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=7.6e-81  Score=574.70  Aligned_cols=298  Identities=59%  Similarity=1.094  Sum_probs=272.8

Q ss_pred             CcccCCCCCChHHHHHHHHHHhhhccEEEEeccCCCHHHHHHHHHHHhHhhCCCHHHHhhhccCCCCccccccCcccccc
Q 022160            2 DKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQPGDVEGYGQAFVMSEE   81 (301)
Q Consensus         2 ~~L~~~~~d~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~   81 (301)
                      +.|.++  |.++.++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++...++..+||+........
T Consensus        59 s~~~~~--~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~  136 (357)
T PLN02216         59 KRLCSS--TAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSED  136 (357)
T ss_pred             hhccCC--ccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCcccccccc
Confidence            445555  554568899999999999999999999999999999999999999999999997755667899765444445


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhcc-cccceEEee
Q 022160           82 TKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFEG-GMQSMRMNY  160 (301)
Q Consensus        82 ~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~-~~~~lr~~~  160 (301)
                      ...||+|.+.+...|.....+|.||+.++.||+.+++|+++|.+|+.+||++|+++||+++++|.+.+.+ ..+.||++|
T Consensus       137 ~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~  216 (357)
T PLN02216        137 QKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNY  216 (357)
T ss_pred             ccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEee
Confidence            6679999998776665567789999999999999999999999999999999999999999999998876 457899999


Q ss_pred             cCCCCCCCcccccccccCCCceEEEeecCCcCceeeeeCCeeEeCCCCCCeEEEEcchhHHHHhcCcccccCcccccCCc
Q 022160          161 CPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNTK  240 (301)
Q Consensus       161 Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqv~~~g~W~~V~p~~g~~vVn~Gd~l~~~TnG~~~s~~HRV~~~~~  240 (301)
                      ||||+.++..+|+++|||+|+||||+|+++++||||+++|+|++|+|+||++|||+||+||+||||+|||+.|||+.++.
T Consensus       217 YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~  296 (357)
T PLN02216        217 YPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSE  296 (357)
T ss_pred             cCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCC
Confidence            99999988899999999999999999965799999999999999999999999999999999999999999999998888


Q ss_pred             CceeeeEEeeCCCCCCeEecCCCCCCCCCCCCCcccCHHHHHHHHHcccCCCCcccccccC
Q 022160          241 KERLSIATFHTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSYVDAIRV  301 (301)
Q Consensus       241 ~~R~Si~~F~~P~~d~~i~pl~~~~~~~~~~~y~~~~~~e~~~~~~~~~~~~~~~~~~~~~  301 (301)
                      ++||||+||++|+.|++|+|+++++++++|++|++++|+||++.++.+...++..++.+||
T Consensus       297 ~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        297 KERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            8999999999999999999999999999999999999999999999999999999999987

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-46
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-46
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 7e-45
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-38
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 9e-17
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 6e-05
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 6e-05
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 164/292 (56%), Gaps = 10/292 (3%)
Query: 6   SDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYW-- 63
           SD      + +E L  A  DWG   LINHG+ + L+E++K+   EFF L +EEK+KY   
Sbjct: 57  SDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYAND 116
Query: 64  QQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYXXXXXXXXXXXXXXXDTLEAHSKEM 123
           Q  G ++GYG     +   +L+W D F     P                 +    ++K +
Sbjct: 117 QATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCL 176
Query: 124 NNLAQKVLNQMAKTLRMDPNDMKELFEGGMQ----SMRMNYCPPCPQPELVIGLNSHSDA 179
             LA KV   ++  L ++P+ +++   GG++     M++NY P CPQPEL +G+ +H+D 
Sbjct: 177 RLLATKVFKALSVGLGLEPDRLEKEV-GGLEELLLQMKINYYPKCPQPELALGVEAHTDV 235
Query: 180 AGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRGTVNT 239
           + L+ +L  N V GLQ+  +G WV  K +PD+ +++IGD LEI++NG Y+SI HRG VN 
Sbjct: 236 SALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK 294
Query: 240 KKERLSIATF-HTPKIEGDLGPAPSLLTPETPALFRRIGVAEYLK-GYFGRE 289
           +K R+S A F   PK +  L P P +++ E+PA F     A++++   FG+E
Sbjct: 295 EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-142
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-140
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 6e-86
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-72
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-68
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 9e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  404 bits (1040), Expect = e-142
 Identities = 106/307 (34%), Positives = 171/307 (55%), Gaps = 11/307 (3%)

Query: 1   MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKK 60
           +  + SD      + +E L  A  DWG   LINHG+ + L+E++K+   EFF L +EEK+
Sbjct: 52  LKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKE 111

Query: 61  KYW--QQPGDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEA 118
           KY   Q  G ++GYG     +   +L+W D F     P   R   ++PK P    +    
Sbjct: 112 KYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSE 171

Query: 119 HSKEMNNLAQKVLNQMAKTLRMDPNDMKELF---EGGMQSMRMNYCPPCPQPELVIGLNS 175
           ++K +  LA KV   ++  L ++P+ +++     E  +  M++NY P CPQPEL +G+ +
Sbjct: 172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA 231

Query: 176 HSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRG 235
           H+D + L+ +L  N V GLQ+  +G WV  K +PD+ +++IGD LEI++NG Y+SI HRG
Sbjct: 232 HTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRG 290

Query: 236 TVNTKKERLSIATFHTPKIEGD-LGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKS 294
            VN +K R+S A F  P  +   L P P +++ E+PA F     A++++     +L GK 
Sbjct: 291 LVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKE 346

Query: 295 YVDAIRV 301
             + +  
Sbjct: 347 QEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.15
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.09
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.06
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 87.59
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 87.35
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 87.32
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.03
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 80.51
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5e-78  Score=556.52  Aligned_cols=292  Identities=35%  Similarity=0.645  Sum_probs=265.0

Q ss_pred             CCcccCCCCCC--hHHHHHHHHHHhhhccEEEEeccCCCHHHHHHHHHHHhHhhCCCHHHHhhhccCC--CCccccccCc
Q 022160            1 MDKLLSDSGDS--THSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQP--GDVEGYGQAF   76 (301)
Q Consensus         1 ~~~L~~~~~d~--~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~   76 (301)
                      |++|.++  |+  ++.++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++....  ..++||+...
T Consensus        52 ls~l~~~--~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~  129 (356)
T 1gp6_A           52 LKNIESD--DEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKL  129 (356)
T ss_dssp             CTTTTCS--CHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCC
T ss_pred             chhccCC--ChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCc
Confidence            3455554  54  2347799999999999999999999999999999999999999999999998754  3689998765


Q ss_pred             ccccccccccccccccccCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhc---ccc
Q 022160           77 VMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFE---GGM  153 (301)
Q Consensus        77 ~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~---~~~  153 (301)
                      .....+..||+|.|++...|.....+|.||+.+++||+.+++|+++|.+|+..||++|+++||+++++|.+.+.   .+.
T Consensus       130 ~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~  209 (356)
T 1gp6_A          130 ANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELL  209 (356)
T ss_dssp             CCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCE
T ss_pred             ccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCcc
Confidence            55556678999999988766544678999999999999999999999999999999999999999999999987   477


Q ss_pred             cceEEeecCCCCCCCcccccccccCCCceEEEeecCCcCceeeeeCCeeEeCCCCCCeEEEEcchhHHHHhcCcccccCc
Q 022160          154 QSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH  233 (301)
Q Consensus       154 ~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqv~~~g~W~~V~p~~g~~vVn~Gd~l~~~TnG~~~s~~H  233 (301)
                      +.||++|||||++++..+|+++|||+|+||||+| ++++||||+++|+|++|+|+||++|||+||+||+||||+|||+.|
T Consensus       210 ~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~H  288 (356)
T 1gp6_A          210 LQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILH  288 (356)
T ss_dssp             EEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCE
T ss_pred             ceeeeeecCCCCCcccccCcCCccCCCeEEEEEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCc
Confidence            8999999999998888899999999999999999 579999999999999999999999999999999999999999999


Q ss_pred             ccccCCcCceeeeEEeeCCCCCC-eEecCCCCCCCCCCCCCcccCHHHHHHHHHcccCCCCcc
Q 022160          234 RGTVNTKKERLSIATFHTPKIEG-DLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKSY  295 (301)
Q Consensus       234 RV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~~~~~~~~~y~~~~~~e~~~~~~~~~~~~~~~  295 (301)
                      ||+.+++.+||||+||++|+.|+ +|.|+++++++++|++|+++||+||++.+++.+++++..
T Consensus       289 RVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          289 RGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             EECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             eecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            99998888999999999999999 999999999999999999999999999999888776543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 301
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 8e-63
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-61
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-52
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-40
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  200 bits (508), Expect = 8e-63
 Identities = 103/303 (33%), Positives = 165/303 (54%), Gaps = 11/303 (3%)

Query: 1   MDKLLSDSGDSTHSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKK 60
           +  + SD      + +E L  A  DWG   LINHG+ + L+E++K+   EFF L +EEK+
Sbjct: 51  LKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKE 110

Query: 61  KYWQQP--GDVEGYGQAFVMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEA 118
           KY      G ++GYG     +   +L+W D F     P   R   ++PK P    +    
Sbjct: 111 KYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSE 170

Query: 119 HSKEMNNLAQKVLNQMAKTLRMDPNDMKELF---EGGMQSMRMNYCPPCPQPELVIGLNS 175
           ++K +  LA KV   ++  L ++P+ +++     E  +  M++NY P CPQPEL +G+ +
Sbjct: 171 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA 230

Query: 176 HSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEHRG 235
           H+D       +  N V GLQ+  +G WV  K +PD+ +++IGD LEI++NG Y+SI HRG
Sbjct: 231 HTDV-SALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRG 289

Query: 236 TVNTKKERLSIATFHTPKIEG-DLGPAPSLLTPETPALFRRIGVAEYLKGYFGRELRGKS 294
            VN +K R+S A F  P  +   L P P +++ E+PA F     A++++     +L GK 
Sbjct: 290 LVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKE 345

Query: 295 YVD 297
             +
Sbjct: 346 QEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.51
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.48
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-72  Score=516.37  Aligned_cols=285  Identities=35%  Similarity=0.660  Sum_probs=250.3

Q ss_pred             CCcccCCCCCCh--HHHHHHHHHHhhhccEEEEeccCCCHHHHHHHHHHHhHhhCCCHHHHhhhccCC--CCccccccCc
Q 022160            1 MDKLLSDSGDST--HSELENLHMACRDWGFFQLINHGVSSSLIEKLKQEIPEFFKLPMEEKKKYWQQP--GDVEGYGQAF   76 (301)
Q Consensus         1 ~~~L~~~~~d~~--~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~   76 (301)
                      |+.|.++  |+.  +..+++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....  +.+.||+...
T Consensus        51 ls~l~~~--d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~  128 (349)
T d1gp6a_          51 LKNIESD--DEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKL  128 (349)
T ss_dssp             CTTTTCS--CHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCC
T ss_pred             ChhcCCC--CHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCcccccccc
Confidence            3556666  652  356799999999999999999999999999999999999999999999997643  3455665544


Q ss_pred             ccccccccccccccccccCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhc---ccc
Q 022160           77 VMSEETKLDWSDMFLMSTLPTYLRKPHLFPKLPLPLRDTLEAHSKEMNNLAQKVLNQMAKTLRMDPNDMKELFE---GGM  153 (301)
Q Consensus        77 ~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~---~~~  153 (301)
                      ........+|.+.+.....+.....+|.||+.++.|++.+++|+++|..++..|+++++++||+++++|.+.+.   .+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~  208 (349)
T d1gp6a_         129 ANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELL  208 (349)
T ss_dssp             CCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCE
T ss_pred             ccccccccchhhhhcccccccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccc
Confidence            44445556666654443344455678999999999999999999999999999999999999999999988874   346


Q ss_pred             cceEEeecCCCCCCCcccccccccCCCceEEEeecCCcCceeeeeCCeeEeCCCCCCeEEEEcchhHHHHhcCcccccCc
Q 022160          154 QSMRMNYCPPCPQPELVIGLNSHSDAAGLSILLQINEVDGLQIKKDGMWVPIKPLPDAFIINIGDVLEIITNGIYRSIEH  233 (301)
Q Consensus       154 ~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqv~~~g~W~~V~p~~g~~vVn~Gd~l~~~TnG~~~s~~H  233 (301)
                      +.||++|||+++.+...+|+++|||+|+||||+| +.++||||+.+|+|++|+|.+|++|||+||+||+||||+||||+|
T Consensus       209 ~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~H  287 (349)
T d1gp6a_         209 LQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILH  287 (349)
T ss_dssp             EEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCE
T ss_pred             eeeeecccccccchhhccccccCCCCcceEEEec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCc
Confidence            7999999999998888999999999999999999 689999999999999999999999999999999999999999999


Q ss_pred             ccccCCcCceeeeEEeeCCCCCCeE-ecCCCCCCCCCCCCCcccCHHHHHHHHHcc
Q 022160          234 RGTVNTKKERLSIATFHTPKIEGDL-GPAPSLLTPETPALFRRIGVAEYLKGYFGR  288 (301)
Q Consensus       234 RV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~~~~~~~y~~~~~~e~~~~~~~~  288 (301)
                      ||+.+++++||||+||++|+.|++| +|+|+|+++++|++|+|+|++||++.++..
T Consensus       288 RVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         288 RGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             EECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             cccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHHhc
Confidence            9999988999999999999999865 899999999999999999999999998743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure