Citrus Sinensis ID: 022219

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR
cccccccccEEEHHHHHHccccEEEEEEEEEEccccEEEccccEEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEcEEEEEEEccEEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEccccccccEEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEEccccccccccccccccEEEEEccEEEEEcEEEEEEEEccccEEEccccccHHHHccc
ccccccccEEEEHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEcccHHHcccEcccccEEEEEEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEHHHccccccEEEEEEEEEEEEcccccEEEEEEEccccccccccEcccccccccccccccccccccHHHHcccccccEEEEEEEcccHHHHHHHHcccccEEEEEEEEEEEEccEEEEEEccccEEEEccccccHHHHHcc
mssqrnqggivRIKELAMHVKHKVNLLGVVLefsiprksqgtdYVCVLKIVddsqqspeLLVNIFTSsidqlprvlsprdliLLKNVMIKKHQAELSAVfykdsssfalfdgnsgsnllpyqsspqrfeiTEAEERRINVLRQWCVgfefssgsndyllslkdisehrYFDLVCKVFHVSYDDSKGLWMLFVwdgtdvpplsipgkledeehnplplhiesspldletlrnffpvgtVLRVSTDRSYENFGRYFTATGKWVRIRNMscqvssgmwhgllqssskirlfsdndnvvwdymr
mssqrnqggivrikelamhVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFtssidqlprvLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVlrvstdrsyenfgryftatgkwvrIRNMSCQVSSGMWHGLLqssskirlfsdndnvvwdymr
MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR
********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDG*****************ITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSI*******************PLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDY**
**********VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSG****************EAEERRINVLRQWC***************LKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPG***********LHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN**WDYMR
********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR
*****NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW*YMR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q6NKX5 454 Protection of telomeres p yes no 0.9 0.594 0.363 6e-37
Q56Y52 467 Protection of telomeres p no no 0.953 0.612 0.307 2e-33
P62597 778 Protection of telomeres p yes no 0.553 0.213 0.303 1e-15
Q9NUX5 634 Protection of telomeres p yes no 0.553 0.261 0.320 3e-14
Q95K48 634 Protection of telomeres p N/A no 0.553 0.261 0.320 3e-14
A9JTY4144 Protection of telomeres p no no 0.373 0.777 0.315 4e-14
Q91WC1 640 Protection of telomeres p no no 0.543 0.254 0.302 5e-12
P29550 493 Telomere-binding protein N/A no 0.556 0.338 0.228 0.0003
>sp|Q6NKX5|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1 Back     alignment and function desciption
 Score =  154 bits (390), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 156/286 (54%), Gaps = 16/286 (5%)

Query: 4   QRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVN 63
           +R+    +RI++    +   VNL+GV++E      S G+D  C LKIVD       L V 
Sbjct: 5   RRDDYKFLRIQDAFKALHLHVNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLPVK 61

Query: 64  IFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD-SSSFALFDGNSGSNLLPYQ 122
               +I  LPRV S  D+ILL  V I     +++A+  +  SSSFALF+G    + +PYQ
Sbjct: 62  FVARTIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIPYQ 121

Query: 123 SSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVS-- 180
           SSP +F + E ++  ++ LR+W + ++F  GS  +  SLKDI E    +L C++ H+S  
Sbjct: 122 SSP-KFLMREQDKNFLSNLREWMITYKFEDGSCCFT-SLKDIKEGECSNLSCQIVHISKV 179

Query: 181 YDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLR 240
           Y D    W LFVWDGT++PP +I  K E      LPL +E   L    LR F   G+VLR
Sbjct: 180 YKDR---WYLFVWDGTEMPPCNILVKSER-----LPLCVEPEMLPTYMLRKFPTFGSVLR 231

Query: 241 VSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286
           +  DR  E    +    G+ V++ N+  QV+ G+W+     S+K++
Sbjct: 232 IIVDRVSEKQAIHCLQPGQHVKLLNLFFQVNMGLWNATFTPSTKMQ 277
Negatively regulates telomerase activity and participate in telomere end-protection. Does not bind single-stranded telomeric DNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q56Y52|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1 Back     alignment and function description
>sp|P62597|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NUX5|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|Q95K48|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1 Back     alignment and function description
>sp|A9JTY4|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C PE=2 SV=2 Back     alignment and function description
>sp|Q91WC1|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1 Back     alignment and function description
>sp|P29550|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis GN=STY56V PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
255556592 460 conserved hypothetical protein [Ricinus 0.963 0.628 0.527 7e-78
255579267 449 conserved hypothetical protein [Ricinus 0.923 0.616 0.417 2e-59
213495898 466 protection of telomeres 1 protein [Solan 0.986 0.635 0.397 3e-58
297734334 491 unnamed protein product [Vitis vinifera] 0.933 0.570 0.406 9e-57
225456171 487 PREDICTED: uncharacterized protein LOC10 0.933 0.574 0.406 1e-56
213495876 466 protection of telomeres 1 protein [Lactu 0.956 0.615 0.403 3e-56
213495900 466 protection of telomeres 1 protein [Nicot 0.956 0.615 0.396 3e-56
213495880 467 protection of telomeres 1 protein [Helia 0.933 0.599 0.416 1e-55
197282461 463 putative single-strand telomere binding 0.96 0.622 0.390 1e-52
213495878 462 protection of telomeres 1 protein [Popul 0.963 0.625 0.384 1e-52
>gi|255556592|ref|XP_002519330.1| conserved hypothetical protein [Ricinus communis] gi|223541645|gb|EEF43194.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 154/292 (52%), Positives = 201/292 (68%), Gaps = 3/292 (1%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID 70
           + I E+A +V  KVNL+G+V+EFS PRKS GTD+V +LKIVD S QSPEL  NIFT  ++
Sbjct: 8   IPIGEVANYVDKKVNLIGIVVEFSFPRKSNGTDFVSILKIVDQSPQSPELSANIFTEKVE 67

Query: 71  QLPRVLSPRDLILLKNVMIKKHQ--AELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRF 128
            LP V S  DLI L+NV I+K+     ++AVF K  SSF LF G+   ++  YQ+  + F
Sbjct: 68  HLPVVKSHGDLIFLQNVTIEKYDDGGVVNAVFDKRFSSFGLFWGSYADDIFCYQTF-RSF 126

Query: 129 EITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLW 188
            ++ +E   +  LR W       SG+N+YL+S+KDI++  YFDLVC+V HVSYD S+G+W
Sbjct: 127 SLSWSERNDLINLRNWWPNAHLDSGTNEYLVSVKDINKGTYFDLVCQVLHVSYDVSRGVW 186

Query: 189 MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYE 248
           +LFVWDGTD P LS+  KL+DEE +PLPL +ES PL  + L NF  +GTVLRV  D  +E
Sbjct: 187 ILFVWDGTDAPLLSLDQKLKDEEKDPLPLQVESVPLGRDILCNFHHIGTVLRVMADECHE 246

Query: 249 NFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR 300
           N    F   GKWVRIRNMS +V +GMW+G L  SSK+RL +DND +V DY R
Sbjct: 247 NLCPQFQGIGKWVRIRNMSGKVWAGMWYGALNPSSKVRLLADNDGIVVDYKR 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579267|ref|XP_002530479.1| conserved hypothetical protein [Ricinus communis] gi|223529976|gb|EEF31902.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|213495898|gb|ACJ49169.1| protection of telomeres 1 protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297734334|emb|CBI15581.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456171|ref|XP_002278684.1| PREDICTED: uncharacterized protein LOC100262869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|213495876|gb|ACJ49158.1| protection of telomeres 1 protein [Lactuca sativa] Back     alignment and taxonomy information
>gi|213495900|gb|ACJ49170.1| protection of telomeres 1 protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|213495880|gb|ACJ49160.1| protection of telomeres 1 protein [Helianthus argophyllus] Back     alignment and taxonomy information
>gi|197282461|gb|ACH57392.1| putative single-strand telomere binding protein [Carica papaya] Back     alignment and taxonomy information
>gi|213495878|gb|ACJ49159.1| protection of telomeres 1 protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2164295 454 AtPOT1b "protection of telomer 0.9 0.594 0.370 2.4e-37
TAIR|locus:2051214 467 AtPOT1a "Protection of Telomer 0.953 0.612 0.311 4.1e-33
UNIPROTKB|F1NSB0 778 POT1 "Protection of telomeres 0.7 0.269 0.275 2.5e-17
UNIPROTKB|P62597 778 POT1 "Protection of telomeres 0.7 0.269 0.275 2.5e-17
UNIPROTKB|F1P716 785 POT1 "Uncharacterized protein" 0.7 0.267 0.293 1.8e-14
UNIPROTKB|Q9NUX5 634 POT1 "Protection of telomeres 0.7 0.331 0.293 2.3e-14
UNIPROTKB|Q95K48 634 POT1 "Protection of telomeres 0.7 0.331 0.293 2.3e-14
UNIPROTKB|E1BGK3 782 POT1 "Uncharacterized protein" 0.553 0.212 0.314 8.3e-14
ZFIN|ZDB-GENE-110324-1 773 pot1 "protection of telomeres 0.606 0.235 0.312 2e-13
RGD|1582873 636 Pot1b "protection of telomeres 0.55 0.259 0.294 5.9e-12
TAIR|locus:2164295 AtPOT1b "protection of telomeres 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 106/286 (37%), Positives = 159/286 (55%)

Query:     4 QRNQGGIVRIKEL--AMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELL 61
             +R+    +RI++   A+H+ H VNL+GV++E      S G+D  C LKIVD       L 
Sbjct:     5 RRDDYKFLRIQDAFKALHL-H-VNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLP 59

Query:    62 VNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD-SSSFALFDGNSGSNLLP 120
             V     +I  LPRV S  D+ILL  V I     +++A+  +  SSSFALF+G    + +P
Sbjct:    60 VKFVARTIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIP 119

Query:   121 YQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVS 180
             YQSSP +F + E ++  ++ LR+W + ++F  GS  +  SLKDI E    +L C++ H+S
Sbjct:   120 YQSSP-KFLMREQDKNFLSNLREWMITYKFEDGSCCFT-SLKDIKEGECSNLSCQIVHIS 177

Query:   181 YDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLR 240
                 K  W LFVWDGT++PP +I  K E      LPL +E   L    LR F   G+VLR
Sbjct:   178 -KVYKDRWYLFVWDGTEMPPCNILVKSER-----LPLCVEPEMLPTYMLRKFPTFGSVLR 231

Query:   241 VSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286
             +  DR  E    +    G+ V++ N+  QV+ G+W+     S+K++
Sbjct:   232 IIVDRVSEKQAIHCLQPGQHVKLLNLFFQVNMGLWNATFTPSTKMQ 277
GO:0000723 "telomere maintenance" evidence=IEA;IMP
GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0016233 "telomere capping" evidence=IMP
GO:0043047 "single-stranded telomeric DNA binding" evidence=TAS
TAIR|locus:2051214 AtPOT1a "Protection of Telomeres 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSB0 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P62597 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P716 POT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NUX5 POT1 "Protection of telomeres protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K48 POT1 "Protection of telomeres protein 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGK3 POT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110324-1 pot1 "protection of telomeres 1 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1582873 Pot1b "protection of telomeres 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
cd04497138 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfami 5e-27
pfam02765141 pfam02765, Telo_bind, Telomeric single stranded DN 3e-26
smart00976137 smart00976, Telo_bind, Telomeric single stranded D 3e-22
>gnl|CDD|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information 
 Score =  102 bits (256), Expect = 5e-27
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS-QQSPELLVNIFTSSI 69
             +          VN++GVV++   P +S+GTDY C L I D S   S  L V +F  + 
Sbjct: 4   TPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE 63

Query: 70  DQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFE 129
           + LP V    D+ILL+ V I+ +  +   +     SS+A+F G+ G   +P QSS    E
Sbjct: 64  ESLPIV-KVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKP-VE 121

Query: 130 ITEAEERRINVLRQW 144
               EE  +  LR+W
Sbjct: 122 FGPEEEPSVEELRKW 136

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA. Length = 138
>gnl|CDD|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information
>gnl|CDD|214949 smart00976, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 100.0
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 100.0
KOG4757 522 consensus Predicted telomere binding protein [Gene 100.0
cd04498123 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds simil 99.89
PRK07211 485 replication factor A; Reviewed 99.01
PRK12366 637 replication factor A; Reviewed 98.9
PRK15491374 replication factor A; Provisional 98.88
PRK07218 423 replication factor A; Provisional 98.86
PRK12366 637 replication factor A; Reviewed 98.67
PRK14699484 replication factor A; Provisional 98.65
PRK06386 358 replication factor A; Reviewed 98.65
PRK15491374 replication factor A; Provisional 98.51
PRK14699484 replication factor A; Provisional 98.31
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 98.28
PRK07211 485 replication factor A; Reviewed 98.22
PRK06461129 single-stranded DNA-binding protein; Reviewed 98.16
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 98.08
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 97.85
TIGR00617 608 rpa1 replication factor-a protein 1 (rpa1). This f 97.79
PRK06461129 single-stranded DNA-binding protein; Reviewed 97.39
PRK08402355 replication factor A; Reviewed 97.38
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 97.22
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 97.07
KOG3416134 consensus Predicted nucleic acid binding protein [ 96.84
PRK07217 311 replication factor A; Reviewed 96.75
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 96.47
PRK07217311 replication factor A; Reviewed 96.42
cd04481106 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc 96.37
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 96.23
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 96.19
PRK06386358 replication factor A; Reviewed 96.06
PRK07218423 replication factor A; Provisional 95.93
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 95.9
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 95.42
PRK08402 355 replication factor A; Reviewed 95.39
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 95.28
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 95.08
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 95.02
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 94.51
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 94.06
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 91.58
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 90.67
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 88.13
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 86.54
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 85.77
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 85.68
PRK07373449 DNA polymerase III subunit alpha; Reviewed 85.34
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 84.34
PF09104143 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide 81.07
KOG3056 578 consensus Protein required for S-phase initiation 80.88
PRK056731135 dnaE DNA polymerase III subunit alpha; Validated 80.82
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 80.05
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information 
Probab=100.00  E-value=3.7e-36  Score=248.78  Aligned_cols=137  Identities=33%  Similarity=0.507  Sum_probs=129.8

Q ss_pred             cceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCC-CCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 022219            8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ-SPELLVNIFTSSIDQLPRVLSPRDLILLKN   86 (300)
Q Consensus         8 y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~-~~gl~v~iF~~~~~~LP~v~~~GDII~l~r   86 (300)
                      |.|++|++|....++.|||||||+|+++|++++|+||+|+|+|+|+|.. +.||+|+||++++++||.+ ++||||+|||
T Consensus         1 ~~f~~i~~~~~~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v-~~GDVIll~~   79 (138)
T cd04497           1 YKYTPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIV-KVGDIILLRR   79 (138)
T ss_pred             CceEeHHHHHhccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCC-CCCCEEEEEE
Confidence            7899999998888999999999999999999999999999999999997 7899999999999999999 8999999999


Q ss_pred             EEEEEEcCeEEEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhh
Q 022219           87 VMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCV  146 (300)
Q Consensus        87 ~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~  146 (300)
                      ++|+.|+|+.+++++.+.|+||||++..+....|++.+. +++++++|+++++.||+|+.
T Consensus        80 ~kv~~~~g~~~~~~~~~~ss~avf~~~~~~~~~p~~~~~-~~~~~~~e~~~~~~Lr~w~~  138 (138)
T cd04497          80 VKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSK-PVEFGPEEEPSVEELRKWAS  138 (138)
T ss_pred             EEEEEECCceEEEECCCceeEEEEcCCCCCCcCccccCC-CcccCcchHHHHHHHHHhhC
Confidence            999999999999999766999999999999988998877 59999999999999999973

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>KOG4757 consensus Predicted telomere binding protein [General function prediction only] Back     alignment and domain information
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1) Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel Back     alignment and domain information
>KOG3056 consensus Protein required for S-phase initiation or completion [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
3kjo_A299 Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length 9e-16
1xjv_A294 Crystal Structure Of Human Pot1 Bound To Telomeric 1e-15
1k8g_A320 Crystal Structure Of The N-Terminal Domain Of Oxytr 9e-04
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length = 299 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD  Q + +L   +F+ + + LP +    D++ 
Sbjct: 23  VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 80
Query: 84  LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
              + I+ ++ E   +    SS FA   F+G  G+ ++P ++S + F  T  + + +  L
Sbjct: 81  FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVEAL 136
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199
           R W       S +   LL L D+   +YFDL C++   +  D    ++L VWDGT  P
Sbjct: 137 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 190
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single- Stranded Dna (Ttagggttag) Length = 294 Back     alignment and structure
>pdb|1K8G|A Chain A, Crystal Structure Of The N-Terminal Domain Of Oxytricha Nova Telomere End Binding Protein Alpha Subunit Both Uncomplexed And Complexed With Telomeric Ssdna Length = 320 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 8e-53
1jb7_A 495 Telomere-binding protein alpha subunit; DNA-protei 2e-43
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 1e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Length = 294 Back     alignment and structure
 Score =  173 bits (440), Expect = 8e-53
 Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 39/288 (13%)

Query: 23  KVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI 82
            VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++
Sbjct: 17  IVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIV 74

Query: 83  LLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLR 142
               + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR
Sbjct: 75  RFHRLKIQVYKKETQGITSSGFASL-TFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALR 132

Query: 143 QWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLS 202
            W          +  LL L D+   +YFDL C++   +  D    ++L VWDGT  P  S
Sbjct: 133 VW---ASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVD-GASFLLKVWDGTRTPFPS 188

Query: 203 IPGKLED---EEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGK 259
               ++D   E        +++  +D+    N   V   L+V                G 
Sbjct: 189 WRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV----------------GS 232

Query: 260 WVRIRNMSCQVSS------------GMWHGLLQSSSKIRLFSDNDNVV 295
           ++RI ++  ++ S               HG       IR+  ++++ V
Sbjct: 233 FLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDV 280
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Length = 495 Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Length = 187 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 100.0
1jb7_A 495 Telomere-binding protein alpha subunit; DNA-protei 100.0
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 100.0
4hik_A143 Protection of telomeres protein 1; specificity, pl 99.98
2k50_A115 Replication factor A related protein; uncharacteri 98.66
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 98.53
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.4
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 98.38
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.37
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 98.37
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 98.04
2kbn_A109 Conserved protein; nucleic acid binding protein, b 98.0
2kbn_A109 Conserved protein; nucleic acid binding protein, b 97.91
3dm3_A105 Replication factor A; probably plays AN essential 97.9
4gop_C 444 Putative uncharacterized protein; OB fold, ssDNA b 97.84
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 97.84
3e0e_A97 Replication protein A; structural genomics, PSI-2, 97.76
2k50_A115 Replication factor A related protein; uncharacteri 97.73
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 97.56
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 97.53
3dm3_A105 Replication factor A; probably plays AN essential 96.93
3e0e_A97 Replication protein A; structural genomics, PSI-2, 96.58
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 96.34
1xjv_A 294 Protection of telomeres 1; protein-DNA complex, si 95.38
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 95.03
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.87
1miu_A738 BRCA2, breast cancer type 2 susceptibility protein 94.76
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 94.11
3ebe_A200 Protein MCM10 homolog; OB-fold, zinc finger, CCCH, 93.85
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 93.8
3u4z_A109 Telomerase-associated protein 82; TEB1, processivi 93.51
1jb7_A 495 Telomere-binding protein alpha subunit; DNA-protei 92.97
4hik_A143 Protection of telomeres protein 1; specificity, pl 92.13
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 91.75
3u58_A213 Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1 89.9
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 84.5
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 81.14
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
Probab=100.00  E-value=1.7e-63  Score=459.41  Aligned_cols=270  Identities=23%  Similarity=0.346  Sum_probs=232.6

Q ss_pred             CCcceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 022219            6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK   85 (300)
Q Consensus         6 ~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~   85 (300)
                      ++|+|++|+++.  .++.|||||||+|+++|++|+|+||+|||+|+|+|..  ||+|+||++++++||.+.++||||+||
T Consensus         2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l~   77 (294)
T 1xjv_A            2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRFH   77 (294)
T ss_dssp             CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred             CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC--CEEEEEECCChHHCCCCCCCCCEEEEE
Confidence            689999999885  5889999999999999999999999999999999984  699999999999999998899999999


Q ss_pred             eEEEEEEcCeEEEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCccccCCccccccccccc
Q 022219           86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS  165 (300)
Q Consensus        86 r~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~~~~~L~di~  165 (300)
                      |++|+.|+|+++++++.++ +|++|+|..+.++.|++.+. +|+++++|++++..||+|+.++....  .+| ++|+||+
T Consensus        78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~-~~~~~~~e~~~~~~Lr~w~~~~~~~~--~~~-~~L~di~  152 (294)
T 1xjv_A           78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRVWASTHMSPS--WTL-LKLCDVQ  152 (294)
T ss_dssp             EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCS-SCCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred             EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCC-CcCCCHHHHHHHHHHHHHHHhccCCC--Cce-eEHHHcc
Confidence            9999999999999998774 45589999888889988776 59999999999999999998876543  358 8999999


Q ss_pred             CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCC-CChhhhhcCCCcc-cEEEEEe
Q 022219          166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSP-LDLETLRNFFPVG-TVLRVST  243 (300)
Q Consensus       166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~G-~~l~V~~  243 (300)
                      +++||||+||||+++ ..++++++|||||||+||+++++...++++.       +++. .++.       .| .+++|++
T Consensus       153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~-------~gd~~~~~~-------~~~lt~~V~~  217 (294)
T 1xjv_A          153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVL-------EGDLSHIHR-------LQNLTIDILV  217 (294)
T ss_dssp             SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCC-------EECHHHHHH-------HGGGSEEEEE
T ss_pred             cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccc-------cCccccccc-------ccCeeEEEEE
Confidence            999999999999999 4478999999999999999988886654321       2211 1111       23 3789998


Q ss_pred             cCchhhhhhcCCCCCcEEEEeccEEEee--------CcEEEEEEeeCC----ceEEcCCCCcccccccC
Q 022219          244 DRSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSSS----KIRLFSDNDNVVWDYMR  300 (300)
Q Consensus       244 ~~~~~~~~~~~lk~G~wv~l~Nv~~k~~--------~g~leg~l~~~s----k~~~l~~~d~~v~~~~~  300 (300)
                      |+.|+.+++ .+|+||||+|+|||+|++        +|.|||.||+++    ||++|+++|+.|.+++|
T Consensus       218 ~d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~  285 (294)
T 1xjv_A          218 YDNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKK  285 (294)
T ss_dssp             ETTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHH
T ss_pred             EcchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHH
Confidence            888887654 799999999999999997        789999999995    59999999999987653
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila} Back     alignment and structure
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila} Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d1xjva1140 b.40.4.3 (A:6-145) Protection of telomeres protein 7e-34
d1jb7a1169 b.40.4.3 (A:36-204) Telomere end binding protein a 1e-31
d1qzga_170 b.40.4.3 (A:) Protection of telomeres protein 1, P 3e-29
d1xjva2151 b.40.4.3 (A:149-299) Protection of telomeres prote 3e-15
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 7e-34
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++ 
Sbjct: 18  VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIVR 75

Query: 84  LKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQ 143
              + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR 
Sbjct: 76  FHRLKIQVYKKETQGITSSGFASLT-FEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRV 133

Query: 144 W 144
           W
Sbjct: 134 W 134
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Length = 169 Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 170 Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 100.0
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 100.0
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 100.0
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 99.94
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 98.9
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 98.02
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 97.97
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 97.91
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 97.47
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 96.72
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 96.32
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 95.98
d1jb7a2124 Telomere end binding protein alpha subunit {Oxytri 95.51
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 94.31
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 94.28
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 92.95
d1jb7a2124 Telomere end binding protein alpha subunit {Oxytri 90.28
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 88.88
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 84.17
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-41  Score=275.45  Aligned_cols=139  Identities=25%  Similarity=0.407  Sum_probs=129.3

Q ss_pred             CCCcceeehhhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 022219            5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL   84 (300)
Q Consensus         5 ~~~y~y~~l~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l   84 (300)
                      .++|.|++|+++.  .|+.||+||||+|+++|++|||+||+|+|+|+|+|+.  ||+|+||++++++||.+.++||||||
T Consensus         1 ~~~Y~Y~~la~l~--~~~~vnv~gVV~~~~~p~~s~g~D~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l   76 (140)
T d1xjva1           1 ATNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRF   76 (140)
T ss_dssp             CCCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEE
T ss_pred             CCcceEeEHHHcc--CCCEEEEEEEEeecCCCEEcCCCeEEEEEEEEeCCCC--CeEEEEECCChHHCCCCCCCCCEEEE
Confidence            3689999999997  5789999999999999999999999999999999974  69999999999999999889999999


Q ss_pred             eeEEEEEEcCeEEEEeecCceEEEEEeCCCCCCccccccCCCCcCCCHHHHHHHHHHHHhhhcCc
Q 022219           85 KNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFE  149 (300)
Q Consensus        85 ~r~kv~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~  149 (300)
                      ||++++.|+|+++++++.+ ++|++|+|..+.++.||+++. +|+++++|+++++.||+|+++|.
T Consensus        77 ~r~~v~~~~~~~~~~~~~~-~ss~~F~g~~g~~~~p~~ss~-~~~~~~~d~~~~~~LR~Wa~~~~  139 (140)
T d1xjva1          77 HRLKIQVYKKETQGITSSG-FASLTFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRVWASTHM  139 (140)
T ss_dssp             EEEEEEEETTEEEEEEEEE-EEEEEECCSTTCCCCCBCSCS-SCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEECCeEEEEecCC-EEEEEEeCCCCCcccceEcCC-cccCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999876 667889999999999998777 59999999999999999998763
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure