Citrus Sinensis ID: 022223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MSRSCSQCGNNGHNSRTCAEAGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASSTDTARHQETITVPLPQPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKLGGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAFQAMSSGDSNSIISVA
cccccccccccccccccccccccccccccccccccEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcc
ccccccccccccccccccccccccccccccccccEEEEEEEEEEcccHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHccccccccccccEEcccHHHHHHHHHHHHHHHcccccHcccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccHccccccccEEEEc
msrscsqcgnnghnsrtcaeaggggssgagseenGIMLFGVRVtegsssfrksismdnlsqfdqpqdsnadagyasddivhasgrsrerkrgvpwtedEHRLFLLGLqkvgkgdwrgisrnfvktrtptqvaSHAQKYFLRRFNQNKrrrrsslfditasstdtarhqetitvplpqpqlnrhpggfpvsaypvkhsavvlpftgeksmgnltigpsnkprtspklirpipihpvppssklgglnlnqkathvdvdtlplslklstpssssdeqsaqtphsSAAFQAmssgdsnsiisva
msrscsqcgnnghnsrtcaEAGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDdivhasgrsrerkrgvpwtedehrLFLLglqkvgkgdwRGISRnfvktrtptqvashaqkyflrrfnqnkrrrrsslfditasstdtarhqetitvplpqpqlnRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKLGGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAfqamssgdsnsiisva
MSRSCSQCGNNGHNSRTCaeaggggssgagseeNGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLrrfnqnkrrrrSSLFDITASSTDTARHQETITVPLPQPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKLGGLNLNQKATHVDVDtlplslklstpssssDEQSAQTPHSSAAFQAMSSGDSNSIISVA
************************************MLFGV****************************************************PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF*******************************************FPVSAYPVKHSAVVLPFT************************************************************************************************
*SRSCSQCGNNGHNSR*********************LFG******************************************************WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY******************************************************************************************************************************************************************
*************NSRTC***********GSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIVHAS**********PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASSTDTARHQETITVPLPQPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKLGGLNLNQKATHVDVDTLPLSLK*************************************
********************************ENGIMLFGVRVTEGSSSFR****************************************GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN*************************************************************************NKPRTSPKLIRPIPIHPVPPSSKLGGLNL**************************************F**MSSGDSNSIISVA
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MSRSCSQCGNNGHNSRTCAEAGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASSTDTARHQETITVPLPQPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKLGGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAFQAMSSGDSNSIISVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q2V9B0297 Transcription factor MYB1 N/A no 0.863 0.872 0.45 2e-39
Q8S9H7307 Transcription factor DIVA N/A no 0.256 0.250 0.696 9e-27
Q869R9 734 Myb-like protein J OS=Dic yes no 0.216 0.088 0.5 2e-12
Q54HX6 977 Myb-like protein I OS=Dic no no 0.186 0.057 0.491 4e-08
Q54Z40 1217 Myb-like protein H OS=Dic no no 0.18 0.044 0.4 6e-07
Q6R0H0287 Transcription factor ASG4 no no 0.15 0.156 0.489 7e-05
Q54IF9 423 Myb-like protein G OS=Dic no no 0.15 0.106 0.446 0.0001
P92973 608 Protein CCA1 OS=Arabidops no no 0.163 0.080 0.407 0.0004
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 166/300 (55%), Gaps = 41/300 (13%)

Query: 23  GGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNA------------ 70
           GGG  G       IMLFGVRV       RKS+S+++LSQ++ P  +N             
Sbjct: 17  GGGFGGE------IMLFGVRVK--VDPMRKSVSLNDLSQYEHPNANNNNNGGDNNESSKV 68

Query: 71  --DAGYASDD--IVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTR 126
             D GYAS D  + H S   RERKRGVPWTE+EH+LFLLGLQKVGKGDWRGISRNFVKTR
Sbjct: 69  AQDEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTR 128

Query: 127 TPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASST-----DTARHQETITVPLPQPQLN 181
           TPTQVASHAQKYFLRR N N+RRRRSSLFDIT  S      +   +++ I V  P     
Sbjct: 129 TPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSVMPIEEVENKQEIPVVAPATLPT 188

Query: 182 RHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVPPSSKL 241
                FPV+        ++ P   +KS    T+   +   +S  L+ P+P+  +P  S  
Sbjct: 189 TKTNAFPVAP---TVGPIIFPVQIDKSREYPTLLRHDHGNSS-MLVGPVPMFSMPNPSTA 244

Query: 242 GGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAFQAMSS-GDSNSIISVA 300
             LN N  +T       P SL L    S    Q++ T HS  A+  MSS  +  SII VA
Sbjct: 245 IDLNANHNST-----IEPSSLSLRLSLSLDQGQASSTRHS--AYNVMSSFSNGESIIRVA 297
Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.
Solanum tuberosum (taxid: 4113)
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1 Back     alignment and function description
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1 Back     alignment and function description
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1 Back     alignment and function description
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1 Back     alignment and function description
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1 Back     alignment and function description
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1 Back     alignment and function description
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
147793149300 hypothetical protein VITISV_028723 [Viti 0.963 0.963 0.659 2e-95
225424819288 PREDICTED: transcription factor MYB1R1 i 0.923 0.961 0.639 1e-90
255558326331 transcription factor, putative [Ricinus 0.88 0.797 0.643 1e-87
327412633334 putative MYB transcription factor [Rosa 0.99 0.889 0.605 7e-85
302398975323 MYBR domain class transcription factor [ 0.966 0.897 0.582 1e-82
118487153312 unknown [Populus trichocarpa] 0.936 0.900 0.633 3e-81
224110974307 predicted protein [Populus trichocarpa] 0.933 0.912 0.629 7e-81
351722587296 MYB transcription factor MYB138 [Glycine 0.823 0.834 0.593 3e-78
356498079300 PREDICTED: transcription factor MYB1R1 [ 0.84 0.84 0.623 2e-76
357486371314 DIV1B protein [Medicago truncatula] gi|3 0.896 0.856 0.513 1e-68
>gi|147793149|emb|CAN73090.1| hypothetical protein VITISV_028723 [Vitis vinifera] gi|296086475|emb|CBI32064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 231/311 (74%), Gaps = 22/311 (7%)

Query: 1   MSRSCSQCGNNGHNSRTCAEAGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLS 60
           MSRSCSQCGNNGHNSRTC E+GG     AG+  N IMLFGVR+TEG+  FRKS SM NLS
Sbjct: 1   MSRSCSQCGNNGHNSRTCTESGG-----AGAAANDIMLFGVRITEGA--FRKSASMTNLS 53

Query: 61  QFDQPQDSNADAGYASDDIVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISR 120
           Q++QPQDSNADAGYASDD+VHAS RSRERKRGVPWTE+EHRLFLLGLQKVGKGDWRGISR
Sbjct: 54  QYEQPQDSNADAGYASDDVVHASARSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISR 113

Query: 121 NFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASS-------TDTARHQETITV 173
           NFVKTRTPTQVASHAQKYFLRR N N+RRRRSSLFDITA +        +   HQET++ 
Sbjct: 114 NFVKTRTPTQVASHAQKYFLRRNNHNRRRRRSSLFDITADTFMGSTILEEDQVHQETVSP 173

Query: 174 PLPQPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIH 233
           P     LN   GGFPV  +PV  + VVLP     SM  LT+G SN+ +   KLIRPIPI 
Sbjct: 174 PQLHSHLNGSAGGFPVPTFPVTMAPVVLPVASNGSMEILTLGQSNQAKGPTKLIRPIPIL 233

Query: 234 PVPPSSKLGGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAFQAMS---- 289
           PVPPSSK+  LNLN  +T    D LPLSLK S+ +S+S +    T HSS AFQAMS    
Sbjct: 234 PVPPSSKMADLNLNIPST---ADPLPLSLKPSSSTSTSPQSPTATRHSS-AFQAMSESFN 289

Query: 290 SGDSNSIISVA 300
           S   ++IISVA
Sbjct: 290 SSTGDNIISVA 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424819|ref|XP_002271980.1| PREDICTED: transcription factor MYB1R1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558326|ref|XP_002520190.1| transcription factor, putative [Ricinus communis] gi|223540682|gb|EEF42245.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|327412633|emb|CCA29105.1| putative MYB transcription factor [Rosa rugosa] Back     alignment and taxonomy information
>gi|302398975|gb|ADL36782.1| MYBR domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|118487153|gb|ABK95405.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110974|ref|XP_002315700.1| predicted protein [Populus trichocarpa] gi|222864740|gb|EEF01871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351722587|ref|NP_001237761.1| MYB transcription factor MYB138 [Glycine max] gi|110931720|gb|ABH02859.1| MYB transcription factor MYB138 [Glycine max] Back     alignment and taxonomy information
>gi|356498079|ref|XP_003517881.1| PREDICTED: transcription factor MYB1R1 [Glycine max] Back     alignment and taxonomy information
>gi|357486371|ref|XP_003613473.1| DIV1B protein [Medicago truncatula] gi|355514808|gb|AES96431.1| DIV1B protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2020653261 AT1G70000 [Arabidopsis thalian 0.646 0.743 0.612 1.2e-67
TAIR|locus:2171519365 AT5G47390 [Arabidopsis thalian 0.476 0.391 0.517 5.2e-41
TAIR|locus:2094942387 AT3G16350 [Arabidopsis thalian 0.613 0.475 0.410 5.2e-41
TAIR|locus:2011216285 AT1G19000 [Arabidopsis thalian 0.383 0.403 0.593 7.8e-38
TAIR|locus:2027181265 AT1G74840 [Arabidopsis thalian 0.69 0.781 0.429 2e-31
TAIR|locus:2151621317 AT5G61620 [Arabidopsis thalian 0.586 0.555 0.403 2.6e-31
TAIR|locus:2165106233 AT5G56840 [Arabidopsis thalian 0.483 0.622 0.459 1.1e-30
TAIR|locus:2028461314 AT1G49010 [Arabidopsis thalian 0.65 0.621 0.372 5.9e-25
TAIR|locus:2159607298 AT5G08520 [Arabidopsis thalian 0.59 0.593 0.398 5.9e-25
TAIR|locus:2154508288 AT5G58900 [Arabidopsis thalian 0.293 0.305 0.588 3.8e-23
TAIR|locus:2020653 AT1G70000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 581 (209.6 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
 Identities = 125/204 (61%), Positives = 138/204 (67%)

Query:     1 MSRSCSQCGNNGHNSRTCXXXXXXXXXXXXXXXN--GIMLFGVRVTEGSSS-FRKSISMD 57
             MSRSCSQCGNNGHNSRTC                   IMLFGVRVTE SSS FRKS+SM+
Sbjct:     1 MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMN 60

Query:    58 NLSQFDQPQDSNA--DAGYASDDIVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDW 115
             NLSQFDQ  D N   D GYASDD+VHASGR+RERKRG PWTE+EHRLFL GL KVGKGDW
Sbjct:    61 NLSQFDQTPDPNPTDDGGYASDDVVHASGRNRERKRGTPWTEEEHRLFLTGLHKVGKGDW 120

Query:   116 RGISRNFVKTRTPTQVASHAQKYFLXXXXXXXXXXXSSLFDITASS-TDTARHQETITVP 174
             RGISRNFVKTRTPTQVASHAQKYFL           SSLFDIT  S   +++ +  +  P
Sbjct:   121 RGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSSKEENQLQTP 180

Query:   175 LPQPQLNRHPGGFPVSAYPVKHSA 198
             L   +L R P   P+   P +  A
Sbjct:   181 L---ELIR-PVPIPIPIPPSRKMA 200
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009651 "response to salt stress" evidence=IEP
GO:0009723 "response to ethylene stimulus" evidence=IEP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2171519 AT5G47390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094942 AT3G16350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011216 AT1G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027181 AT1G74840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151621 AT5G61620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165106 AT5G56840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
TIGR0155757 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai 6e-17
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-09
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-09
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-09
cd1166146 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma 9e-05
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 5e-04
COG5114 432 COG5114, COG5114, Histone acetyltransferase comple 8e-04
>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information 
 Score = 73.2 bits (180), Expect = 6e-17
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 90  KRGVPWTEDEHRLFLLGLQKVGKGDW---RGISRNFVKTR-TPTQVASHAQKYFLRR 142
           K  V WTED H  FL  +QK+G  DW   + I    V    T  QVASH QKY L++
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 99.74
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.51
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.21
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.2
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.93
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 98.92
PLN03212249 Transcription repressor MYB5; Provisional 98.7
PLN03091 459 hypothetical protein; Provisional 98.64
KOG0048238 consensus Transcription factor, Myb superfamily [T 98.35
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 98.31
KOG0724335 consensus Zuotin and related molecular chaperones 98.29
KOG4329445 consensus DNA-binding protein [General function pr 98.27
PLN03212249 Transcription repressor MYB5; Provisional 98.23
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 98.15
PLN03091 459 hypothetical protein; Provisional 98.07
KOG1279506 consensus Chromatin remodeling factor subunit and 97.96
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.56
KOG0049 939 consensus Transcription factor, Myb superfamily [T 97.54
PLN03162526 golden-2 like transcription factor; Provisional 97.12
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.8
KOG3554 693 consensus Histone deacetylase complex, MTA1 compon 96.68
KOG4167907 consensus Predicted DNA-binding protein, contains 96.22
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 95.87
KOG4468 782 consensus Polycomb-group transcriptional regulator 95.65
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 95.38
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.36
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 94.58
PLN031421033 Probable chromatin-remodeling complex ATPase chain 94.47
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 94.45
KOG0724335 consensus Zuotin and related molecular chaperones 94.44
smart0042668 TEA TEA domain. 94.36
PF1439249 zf-CCHC_4: Zinc knuckle 93.59
KOG0051607 consensus RNA polymerase I termination factor, Myb 93.51
KOG0051607 consensus RNA polymerase I termination factor, Myb 93.22
PF1528840 zf-CCHC_6: Zinc knuckle 93.02
COG5147 512 REB1 Myb superfamily proteins, including transcrip 92.64
KOG1194 534 consensus Predicted DNA-binding protein, contains 92.13
KOG3841 455 consensus TEF-1 and related transcription factor, 90.82
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 90.76
PF01285 431 TEA: TEA/ATTS domain family; InterPro: IPR000818 T 90.09
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 89.16
PLN031421033 Probable chromatin-remodeling complex ATPase chain 87.0
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 86.5
COG5147 512 REB1 Myb superfamily proteins, including transcrip 86.2
KOG4282345 consensus Transcription factor GT-2 and related pr 84.98
smart0034326 ZnF_C2HC zinc finger. 84.79
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 84.03
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 82.8
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information 
Probab=99.74  E-value=2.9e-18  Score=127.14  Aligned_cols=53  Identities=49%  Similarity=0.691  Sum_probs=47.6

Q ss_pred             cCCCccCHHHHHHHHHHHHHcCCCCH---HhHhhhhcCCC-CHHHHHHHHHHHHHHh
Q 022223           90 KRGVPWTEDEHRLFLLGLQKVGKGDW---RGISRNFVKTR-TPTQVASHAQKYFLRR  142 (300)
Q Consensus        90 Kkg~~WTeEEh~lFLegLekyGkGdW---k~IAr~~V~TR-T~~QVrSHAQKYF~r~  142 (300)
                      |++..||+|||++||+||+.||.|+|   +.|++.++.++ |+.||+||+||||+++
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            45678999999999999999999999   99995556688 9999999999999863

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03162 golden-2 like transcription factor; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00426 TEA TEA domain Back     alignment and domain information
>PF14392 zf-CCHC_4: Zinc knuckle Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF15288 zf-CCHC_6: Zinc knuckle Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>smart00343 ZnF_C2HC zinc finger Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 1e-25
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 3e-20
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-16
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 1e-15
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-13
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 8e-10
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 1e-09
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 3e-08
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 1e-07
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 2e-07
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 4e-07
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 7e-07
2crg_A70 Metastasis associated protein MTA3; transcription 2e-06
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 4e-06
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-05
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 2e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 4e-05
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 4e-04
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 7e-04
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
 Score = 96.0 bits (239), Expect = 1e-25
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 84  GRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143
           G S      V WT +E  LF  GL K G+  W  IS+  + +RT  QV S+A++YF  + 
Sbjct: 1   GSSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKV 58

Query: 144 NQNKRRRRSS 153
                +   +
Sbjct: 59  KCGLDKETPN 68
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.67
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.57
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.55
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.55
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.51
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.5
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.44
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.41
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 99.38
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.37
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.34
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.32
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.32
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.29
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 99.28
2crg_A70 Metastasis associated protein MTA3; transcription 99.24
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 99.22
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.2
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 99.19
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.18
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.79
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.13
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.09
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.08
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.08
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.03
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 99.03
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.03
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.02
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.02
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.01
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 99.0
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.98
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.94
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.94
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.94
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.89
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.87
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.84
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.82
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.81
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.76
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.63
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.52
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.25
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.75
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.62
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.49
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.43
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.89
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.86
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.79
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.58
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.23
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 95.7
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 95.7
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 94.14
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.66
1dsq_A26 Nucleic acid binding protein P14; CCHC type zinc f 94.16
2hzd_A82 Transcriptional enhancer factor TEF-1; DNA-binding 93.92
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 93.02
1nc8_A29 Nucleocapsid protein; HIV-2, RNA recognition, zinc 89.36
1a6b_B40 Momulv, zinc finger protein NCP10; nucleocapsid pr 87.77
2ihx_A61 Nucleocapsid (NC) protein; protein-RNA complex, vi 83.72
1u6p_A56 GAG polyprotein; MLV, A-minor K-turn, stem loop, b 82.64
2a51_A39 Nucleocapsid protein; sivlhoest, structure, NCP8, 81.07
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 80.62
2bl6_A37 Nucleocapsid protein P11; lentivirus, polyprotein, 80.15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
Probab=99.67  E-value=1.6e-16  Score=119.11  Aligned_cols=65  Identities=32%  Similarity=0.529  Sum_probs=59.8

Q ss_pred             cCCCccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHHHHhhhcccccCCCcccc
Q 022223           90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFD  156 (300)
Q Consensus        90 Kkg~~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF~r~~~~~k~krr~Sl~d  156 (300)
                      .+..+||+|||++|++++++||. +|..|| .+|++||..||+.||++||.+..+.+..+++.|||+
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            34567999999999999999999 999999 699999999999999999999988888888898885
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1 Back     alignment and structure
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A Back     alignment and structure
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Back     alignment and structure
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Back     alignment and structure
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A Back     alignment and structure
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d1irza_64 a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th 7e-18
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 3e-17
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-11
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-11
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-09
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 5e-09
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 3e-07
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 9e-07
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 8e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-04
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 0.001
d1ofcx152 a.4.1.3 (X:799-850) SANT domain of the nucleosome 0.002
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 0.004
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 73.8 bits (181), Expect = 7e-18
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 86  SRERKRGVPWTEDEHRLFLLGLQKVGKGDWR--GISRN-FVKTRTPTQVASHAQKYFLR 141
           + ++K  V WT + H  FL  +  +G        I     V   T   VASH QK+ + 
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.64
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 99.59
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.55
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.41
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.4
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 99.39
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.37
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.34
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.33
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.29
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.25
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.23
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.18
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.98
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.87
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.46
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.37
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 97.99
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.9
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 93.59
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 93.47
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 89.92
d1nc8a_29 HIV nucleocapsid {Human immunodeficiency virus typ 89.68
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 83.18
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 80.14
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.6e-17  Score=111.62  Aligned_cols=45  Identities=31%  Similarity=0.636  Sum_probs=43.7

Q ss_pred             ccCHHHHHHHHHHHHHcCCCCHHhHhhhhcCCCCHHHHHHHHHHHH
Q 022223           94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF  139 (300)
Q Consensus        94 ~WTeEEh~lFLegLekyGkGdWk~IAr~~V~TRT~~QVrSHAQKYF  139 (300)
                      .||+||+++|++++++||.++|..|| ++|++||+.||+.|+++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia-~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHH-HHcCCCCHHHHHHHHHHhC
Confidence            49999999999999999999999999 7999999999999999998
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure